AlfalfaGEDB | MS.gene068604

M. sativa cultivar XinJiangDaYe / MS.gene068604

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF13041.9 PF14432.9 PF20430.1 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068604.t1	XP_024640387.1	94.1	677	39	1	1	677	1	676	0.00E+00	1291.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068604.t1	Q9LSL8	58.1	675	278	4	4	677	68	738	5.2e-231	802.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068604.t1	G7KGK2	94.4	677	37	1	1	677	1	676	0.0e+00	1290.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene013980	MS.gene068604	PPI
MS.gene016050	MS.gene068604	PPI
MS.gene035615	MS.gene068604	PPI
MS.gene044915	MS.gene068604	PPI
MS.gene062402	MS.gene068604	PPI
MS.gene067614	MS.gene068604	PPI
MS.gene068604	MS.gene053206	PPI
MS.gene068604	MS.gene97518	PPI
MS.gene068604	MS.gene043044	PPI
MS.gene068604	MS.gene001666	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068604.t1	MTR_5g031490	94.387	677	37	1	1	677	1	676	0.0	1320
MS.gene068604.t1	MTR_5g049780	92.171	677	38	2	1	677	1	662	0.0	1282
MS.gene068604.t1	MTR_5g031630	84.458	489	21	4	115	551	2	487	0.0	815
MS.gene068604.t1	MTR_5g031630	25.121	414	244	6	41	397	30	434	5.63e-27	115
MS.gene068604.t1	MTR_1g103840	38.156	705	364	8	41	677	82	782	4.77e-164	490
MS.gene068604.t1	MTR_1g103840	25.140	358	202	5	202	494	8	364	1.04e-26	116
MS.gene068604.t1	MTR_5g095690	38.754	658	398	5	22	677	157	811	2.28e-157	474
MS.gene068604.t1	MTR_5g095690	28.298	470	329	6	21	487	55	519	1.00e-64	229
MS.gene068604.t1	MTR_5g095690	30.605	281	190	5	4	281	341	619	1.02e-38	154
MS.gene068604.t1	MTR_5g095690	25.926	270	189	2	216	480	47	310	8.34e-23	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene068604.t1	AT5G65570	58.074	675	278	4	4	677	68	738	0.0	820
MS.gene068604.t1	AT1G11290	39.053	676	406	6	4	677	138	809	2.48e-167	500
MS.gene068604.t1	AT1G11290	28.963	511	348	7	7	512	43	543	2.20e-66	234
MS.gene068604.t1	AT1G11290	27.213	305	216	3	204	506	37	337	8.84e-28	120
MS.gene068604.t1	AT2G22070	34.923	776	404	9	1	677	13	786	1.91e-153	463
MS.gene068604.t1	AT3G49170	37.464	686	413	9	4	677	169	850	1.05e-152	463
MS.gene068604.t1	AT3G49170	27.729	458	304	13	61	502	22	468	2.97e-42	164
MS.gene068604.t1	AT3G57430	35.756	688	425	4	6	677	204	890	6.56e-151	460
MS.gene068604.t1	AT3G57430	26.782	519	356	10	4	503	100	613	5.66e-51	191
MS.gene068604.t1	AT3G57430	29.574	470	287	15	5	447	306	758	1.01e-48	184

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Find 133 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCGGATGTGATACAA+TGG	0.647133	5.1:-21661777	MS.gene068604:CDS
AAAATGTGGAAATGTAGAAA+AGG	0.504062	5.1:-21662130	MS.gene068604:CDS
AAACACGGTCAAACACAAAT+TGG	0.250718	5.1:+21662715	None:intergenic
AAAGCGCAGGAAGAGATTTG+AGG	0.555365	5.1:-21661594	MS.gene068604:CDS
AAATAATGAGAACAAGGAAC+CGG	0.499751	5.1:+21663094	None:intergenic
AAATGCTTGATCAAGCTCCT+AGG	0.455144	5.1:-21661690	MS.gene068604:CDS
AAATTCCTCCTTTAAAATGA+TGG	0.393277	5.1:+21661194	None:intergenic
AAATTTGTTACTCTACTTAC+TGG	0.274896	5.1:-21661250	MS.gene068604:CDS
AACACGGTCAAACACAAATT+GGG	0.469279	5.1:+21662716	None:intergenic
AACTCCTAGTTTCACGGTTA+CGG	0.395120	5.1:+21662197	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAATGAGAACAAGGAAC+CGG	+	chr5.1:21661262-21661281	None:intergenic	30.0%
ACAAATATTTATGCTTCAGC+TGG	-	chr5.1:21662710-21662729	MS.gene068604:CDS	30.0%
ACTTGTATGATTGATCTGTT+AGG	-	chr5.1:21662506-21662525	MS.gene068604:CDS	30.0%
AGCATAGATCATTGTGTTTA+TGG	+	chr5.1:21662291-21662310	None:intergenic	30.0%
ATTGATGCATACATCAAATG+CGG	-	chr5.1:21661294-21661313	MS.gene068604:CDS	30.0%
CAACATCTTTATCCAAAACA+CGG	+	chr5.1:21661656-21661675	None:intergenic	30.0%
CTAAAATTTCATGAGCTCTT+GGG	+	chr5.1:21662862-21662881	None:intergenic	30.0%
CTCTTGTTAATTCAATACTG+TGG	+	chr5.1:21662478-21662497	None:intergenic	30.0%
GTTGATATGTATGCGAAATT+TGG	-	chr5.1:21661600-21661619	MS.gene068604:CDS	30.0%
TATGGATACTACATCTAACT+CGG	+	chr5.1:21662273-21662292	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	21661171	21663204	21661171	ID=MS.gene068604
chr5.1	mRNA	21661171	21663204	21661171	ID=MS.gene068604.t1;Parent=MS.gene068604
chr5.1	exon	21661171	21663204	21661171	ID=MS.gene068604.t1.exon1;Parent=MS.gene068604.t1
chr5.1	CDS	21661171	21663204	21661171	ID=cds.MS.gene068604.t1;Parent=MS.gene068604.t1

Gene Sequence

>MS.gene068604

ATGAATTTATACACTTCCCTCATTGCACAATGCACACACAAAAAATCATTAACTACCCTCAAATCACTTCACACCCACATCCTCAAATCCGGTTCCTTGTTCTCATTATTTGGACACAAGCTCATTGATGCATACATCAAATGCGGTGTCATAGCTGAAGCACGAAAGCTGTTCGATGAAATTCCCAACAGACACATAGTTACTTGGAATTCAATGATCTCTTCTCATGTTAGCCGCGGGAAGATTGAAGAAGCTATTGGGCTTTACAACAACATGCTCTTTGATGGTGTTTTACCTGATGCTTACACGTTCTCCGCGATCTTTAAGGCTTTTTCGGAGACGGGTGTTTTACGTGAGGGGCAGAAGGCACATGGGTTGGCTGTGGTTTTGGGTTTTGAGGTGTCGGATGGGTTTGTTGCAACCGGCATTGTTGATATGTATGCGAAATTTGGTAAAATGAAGGATGCCCAATTTGTGTTTGACCGTGTTTTGGATAAAGATGTTGTCTTGTTCACTGCATTGATTGTTGGGTATAATCAGCATGGTCTTGATGGTGAAGCTTTAGAGGTTTTTGAGGAAATGGTTGGTGGTAGGAGAGTTAAGCCTAATGAATATACTTTAGCAAGTGTTTTGGTTAGTTGTGGTAATCTAGGAGATTTAGTTAATGGTAAATTGATTCATGGTCTTGTTGTTAAGTCTGGTTTGGAATCTGTTGTTGCTTCACAGACTTCACTTCTTACTATGTATTCAAAATGCAACATGGTTGAGGATTCCATAAAGGTGTTCAATCAACTTGCTTATGCAAGCCATGTGACTTGGACATCTTTTATAGTTGGTCTTGTGCATAATGGTAGAGAGGAGGTTGCTTTGTCGATGTTTAGGGAAATGATTCGGTGTTTGATAAGTCCAAATCATTTTACATTGTCTAGTATTCTTCATGCTTGTTCAAGCCTTGCAATGCTTGAAGCAGGGGAACAAATCCATGCCGTAACCGTGAAACTAGGAGTTGATGGAAACAAGTATGTTGATGCTGCACTGATTCATTTGTATGGAAAATGTGGAAATGTAGAAAAGGCAAGATCTGTTTTTGAGTCGTTGACCGAGTTAGATGTAGTATCCATAAACACAATGATCTATGCTTATGCGCAAAACGGTTTTGGGCATGAAGCACTTGAGCTTTTTGAAAGAATGAAAAAATTGGGACTTGAACCAAATGTTGTGACATTTATTAGTATTCTCTTGGCATGTAACAATGCAGGGTTAGTTGAAGAAGGGTGTCAAATATTTTCTCTCATCAGAAACAACCACAGTATTGAATTAACAAGAGATCATTATACTTGTATGATTGATCTGTTAGGAAGAGCTAAGAGATTTGAAGAGGCTGCGATGTTGATAGAGGAGGGGAAAAATCCGGATGTGATACAATGGAGGACGCTGCTGAATGCATGTAAGATTCATGGAGAGGTAGAGATGGCAGAGAAATTTATGAGAAAAATGCTTGATCAAGCTCCTAGGGATGGAGGAACTCATATTCTCTTGACAAATATTTATGCTTCAGCTGGAAAATGGGACAATGTGATCCAGATGAAAAGCGCAGGAAGAGATTTGAGGTTGAAGAAAAGTCCTGCCATGAGTTGGGTTGATATCGATCGCGAGGTTCATACTTTTATGGCAGGAGATTTATCTCACCCAAGAGCTCATGAAATTTTAGAAATGTTGTATGAATTAATAGAGAAGGTTAAAACTTTGGGTTATAATCCTGATACCAAATTTGTGTTGCAGGATTTGGAGGAAGAGAAAAAGATTAGTGCTTTATATTATCACAGTGAAAAATTAGCTATAGCTTTTGCTTTATGGAAGACTTGTGGTAGGAAAACTACTATCAGGATTTTCAAGAATCTTAGAGTTTGTGGGGACTGTCACAGTTGGATAAAATTTGTTACTCTACTTACTGGGAGAGATATAATTGCTAGAGATGCAAAGAGATTCCATCATTTTAAAGGAGGAATTTGTTCTTGTAAAGATTATTGGTGA

Protein sequence

>MS.gene068604.t1

MNLYTSLIAQCTHKKSLTTLKSLHTHILKSGSLFSLFGHKLIDAYIKCGVIAEARKLFDEIPNRHIVTWNSMISSHVSRGKIEEAIGLYNNMLFDGVLPDAYTFSAIFKAFSETGVLREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDAQFVFDRVLDKDVVLFTALIVGYNQHGLDGEALEVFEEMVGGRRVKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNMVEDSIKVFNQLAYASHVTWTSFIVGLVHNGREEVALSMFREMIRCLISPNHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLNACKIHGEVEMAEKFMRKMLDQAPRDGGTHILLTNIYASAGKWDNVIQMKSAGRDLRLKKSPAMSWVDIDREVHTFMAGDLSHPRAHEILEMLYELIEKVKTLGYNPDTKFVLQDLEEEKKISALYYHSEKLAIAFALWKTCGRKTTIRIFKNLRVCGDCHSWIKFVTLLTGRDIIARDAKRFHHFKGGICSCKDYW