Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001813.t1 | O22585.1 | 99 | 496 | 5 | 0 | 1 | 496 | 1 | 496 | 4.70E-297 | 1029.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001813.t1 | O22585 | 99.0 | 496 | 5 | 0 | 1 | 496 | 1 | 496 | 1.1e-299 | 1029.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001813.t1 | A0A072UUL3 | 97.6 | 496 | 12 | 0 | 1 | 496 | 1 | 496 | 1.1e-292 | 1014.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001813 | MS.gene49858 | PPI |
| MS.gene35779 | MS.gene001813 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001813.t1 | MTR_4g045667 | 97.581 | 496 | 12 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1008 |
| MS.gene001813.t1 | MTR_2g089030 | 73.306 | 487 | 130 | 0 | 8 | 494 | 81 | 567 | 0.0 | 780 |
| MS.gene001813.t1 | MTR_5g013620 | 50.575 | 435 | 198 | 4 | 11 | 442 | 87 | 507 | 7.95e-158 | 459 |
| MS.gene001813.t1 | MTR_5g013640 | 50.577 | 433 | 197 | 4 | 13 | 442 | 87 | 505 | 4.63e-157 | 457 |
| MS.gene001813.t1 | MTR_4g099110 | 51.501 | 433 | 199 | 5 | 13 | 442 | 78 | 502 | 5.45e-155 | 452 |
| MS.gene001813.t1 | MTR_7g077410 | 49.543 | 438 | 211 | 4 | 12 | 445 | 264 | 695 | 9.19e-150 | 444 |
| MS.gene001813.t1 | MTR_5g026210 | 45.547 | 393 | 210 | 3 | 12 | 402 | 217 | 607 | 5.07e-130 | 392 |
| MS.gene001813.t1 | MTR_6g477780 | 52.326 | 344 | 155 | 6 | 104 | 442 | 9 | 348 | 5.55e-120 | 357 |
| MS.gene001813.t1 | MTR_8g099775 | 37.671 | 438 | 260 | 8 | 14 | 444 | 80 | 511 | 3.96e-102 | 317 |
| MS.gene001813.t1 | MTR_5g026210 | 46.599 | 294 | 151 | 2 | 12 | 304 | 217 | 505 | 7.13e-98 | 305 |
| MS.gene001813.t1 | MTR_2g020240 | 38.196 | 377 | 219 | 6 | 13 | 383 | 83 | 451 | 8.40e-90 | 285 |
| MS.gene001813.t1 | MTR_5g026210 | 47.951 | 244 | 126 | 1 | 12 | 254 | 217 | 460 | 7.39e-85 | 270 |
| MS.gene001813.t1 | MTR_2g020240 | 39.441 | 322 | 182 | 5 | 67 | 383 | 3 | 316 | 6.10e-80 | 254 |
| MS.gene001813.t1 | MTR_6g477770 | 50.538 | 93 | 46 | 0 | 13 | 105 | 106 | 198 | 2.66e-29 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001813.t1 | AT4G15210 | 69.076 | 498 | 152 | 2 | 1 | 496 | 1 | 498 | 0.0 | 741 |
| MS.gene001813.t1 | AT2G32290 | 67.004 | 494 | 160 | 2 | 2 | 494 | 67 | 558 | 0.0 | 699 |
| MS.gene001813.t1 | AT4G15210 | 69.213 | 445 | 137 | 0 | 52 | 496 | 1 | 445 | 0.0 | 676 |
| MS.gene001813.t1 | AT4G15210 | 69.213 | 445 | 137 | 0 | 52 | 496 | 1 | 445 | 0.0 | 676 |
| MS.gene001813.t1 | AT4G15210 | 71.220 | 410 | 116 | 2 | 1 | 408 | 1 | 410 | 0.0 | 631 |
| MS.gene001813.t1 | AT4G00490 | 52.174 | 437 | 199 | 4 | 13 | 445 | 95 | 525 | 2.02e-164 | 476 |
| MS.gene001813.t1 | AT4G17090 | 50.808 | 433 | 202 | 4 | 13 | 442 | 86 | 510 | 8.84e-162 | 470 |
| MS.gene001813.t1 | AT3G23920 | 50.909 | 440 | 209 | 6 | 13 | 447 | 106 | 543 | 1.64e-158 | 462 |
| MS.gene001813.t1 | AT2G45880 | 47.153 | 439 | 220 | 5 | 12 | 445 | 247 | 678 | 1.06e-140 | 421 |
| MS.gene001813.t1 | AT5G45300 | 41.284 | 436 | 248 | 4 | 12 | 445 | 252 | 681 | 2.12e-120 | 368 |
| MS.gene001813.t1 | AT5G45300 | 41.284 | 436 | 248 | 4 | 12 | 445 | 254 | 683 | 2.21e-120 | 368 |
| MS.gene001813.t1 | AT5G45300 | 41.284 | 436 | 248 | 4 | 12 | 445 | 268 | 697 | 3.98e-120 | 368 |
| MS.gene001813.t1 | AT5G55700 | 40.268 | 447 | 245 | 9 | 13 | 445 | 92 | 530 | 4.55e-112 | 342 |
| MS.gene001813.t1 | AT5G55700 | 41.691 | 343 | 182 | 8 | 113 | 445 | 33 | 367 | 4.95e-85 | 267 |
| MS.gene001813.t1 | AT5G18670 | 33.257 | 436 | 272 | 6 | 6 | 439 | 80 | 498 | 3.96e-74 | 244 |
Find 113 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGGAATTGGAGAGTTTC+AGG | 0.170209 | 4.3:-52312466 | MS.gene001813:intron |
| ACACCAATCGCTCCGGTATT+AGG | 0.274428 | 4.3:-52313036 | MS.gene001813:CDS |
| ACTCCATACATTCGAAGTTT+TGG | 0.293619 | 4.3:+52311585 | None:intergenic |
| GGATGGCAATTTCCTGGAAT+TGG | 0.314241 | 4.3:-52312477 | MS.gene001813:CDS |
| AGAACATCATCAGGAATCTT+TGG | 0.317642 | 4.3:+52311334 | None:intergenic |
| CTACATTTCCTCCACATTGA+TGG | 0.320030 | 4.3:+52313128 | None:intergenic |
| TGAAGCTAATAAAGCTTTCC+TGG | 0.337953 | 4.3:-52312134 | MS.gene001813:CDS |
| TAGGAAGAATTTCCCTTTCT+CGG | 0.339908 | 4.3:+52312204 | None:intergenic |
| TTGAAGAATTCGGTAGATTC+TGG | 0.345794 | 4.3:+52312247 | None:intergenic |
| AGTTGTTCTTTAAGTCCATC+TGG | 0.346354 | 4.3:+52313310 | None:intergenic |
| GATAACAAACCCATCTTTCA+TGG | 0.347915 | 4.3:-52312986 | MS.gene001813:CDS |
| ATTGGTTAGAATACCAAGTT+AGG | 0.349643 | 4.3:+52312185 | None:intergenic |
| AGAGAAAACATTGAAGTTGC+TGG | 0.361074 | 4.3:-52311696 | MS.gene001813:CDS |
| GATCACCATGATTCAGCAAT+TGG | 0.366811 | 4.3:+52312167 | None:intergenic |
| GAAACAGACATGAAAGTTGA+TGG | 0.371042 | 4.3:-52311268 | MS.gene001813:CDS |
| ACTGGGAGCATGACATAAAC+TGG | 0.372512 | 4.3:+52313463 | None:intergenic |
| AGCCAATACCGCCGTTCCCC+TGG | 0.375627 | 4.3:-52311297 | MS.gene001813:CDS |
| CGATTGGTGTAGAAGATATC+AGG | 0.378414 | 4.3:+52313049 | None:intergenic |
| ACCTGAAACTCTCCAATTCC+AGG | 0.378431 | 4.3:+52312465 | None:intergenic |
| AATCAAGGATGGCAATTTCC+TGG | 0.389845 | 4.3:-52312483 | MS.gene001813:CDS |
| CATGTCTGTTTCTGAATCCC+AGG | 0.393293 | 4.3:+52311279 | None:intergenic |
| TCCCAGGGGAACGGCGGTAT+TGG | 0.394469 | 4.3:+52311295 | None:intergenic |
| TTTGGTCCTGATGGCTTTAA+CGG | 0.401034 | 4.3:+52311352 | None:intergenic |
| AAGCTTTATTAGCTTCATCT+AGG | 0.401337 | 4.3:+52312140 | None:intergenic |
| TTGTACGTGCCAGCGTCATC+TGG | 0.406376 | 4.3:+52312277 | None:intergenic |
| GTCTTGCATTCAGTATGATT+TGG | 0.408923 | 4.3:+52311634 | None:intergenic |
| AAAGCAGCTGCAGCGAGTGC+TGG | 0.411824 | 4.3:-52312319 | MS.gene001813:CDS |
| CTGGAGAAAATGCACTTTCA+AGG | 0.424053 | 4.3:-52311677 | MS.gene001813:CDS |
| AAGGGAAATTCTTCCTAACT+TGG | 0.434705 | 4.3:-52312198 | MS.gene001813:CDS |
| GTGAGTTCTGCAGCGTGATT+CGG | 0.440264 | 4.3:+52311973 | None:intergenic |
| GGCCGTTCTTCCATGAAAGA+TGG | 0.440893 | 4.3:+52312976 | None:intergenic |
| GGCACATACCTTACCGAGAA+AGG | 0.443243 | 4.3:-52312217 | MS.gene001813:CDS |
| CTATGTATAATAAAGGTCTC+TGG | 0.447912 | 4.3:-52312018 | MS.gene001813:intron |
| CACCAATGCTCAGATATTCC+TGG | 0.447983 | 4.3:+52313011 | None:intergenic |
| CCTCCAAAACTTCGAATGTA+TGG | 0.451158 | 4.3:-52311588 | MS.gene001813:CDS |
| AGGGACCTAAGGAGTATGAT+TGG | 0.463127 | 4.3:-52313219 | MS.gene001813:CDS |
| CGAGTGCTGGCCATTCTGAA+TGG | 0.465242 | 4.3:-52312306 | MS.gene001813:CDS |
| CATCAATGTGGAGGAAATGT+AGG | 0.469434 | 4.3:-52313127 | MS.gene001813:CDS |
| GGTCCTGATGGCTTTAACGG+TGG | 0.475010 | 4.3:+52311355 | None:intergenic |
| AGAATTTCCCTTTCTCGGTA+AGG | 0.475535 | 4.3:+52312209 | None:intergenic |
| GCACTCCAATCATACTCCTT+AGG | 0.478043 | 4.3:+52313214 | None:intergenic |
| GGTAAAGATGCATGCAGATC+AGG | 0.484424 | 4.3:-52311496 | MS.gene001813:intron |
| GCTTCATTAAGAACATCATC+AGG | 0.484558 | 4.3:+52311325 | None:intergenic |
| CTAATTTGACTTTACATCCC+AGG | 0.486962 | 4.3:+52312116 | None:intergenic |
| GTGTTATGACAAATATTTGA+AGG | 0.488663 | 4.3:-52312350 | MS.gene001813:CDS |
| ATAGACATTGAAGTCGGTCT+TGG | 0.489311 | 4.3:-52312543 | MS.gene001813:CDS |
| ACCGAATTCTTCAAAACAAA+CGG | 0.489789 | 4.3:-52312238 | MS.gene001813:CDS |
| CAAAGTTTAACTCACCTCAA+TGG | 0.489937 | 4.3:+52312955 | None:intergenic |
| TCAAGCACCCACTTTGGTAA+TGG | 0.492462 | 4.3:+52313088 | None:intergenic |
| CCGTCTTATCCGCAGAATCA+AGG | 0.494530 | 4.3:-52312498 | MS.gene001813:CDS |
| CCGTCTTTGTTGACACCTTG+TGG | 0.501716 | 4.3:+52311612 | None:intergenic |
| TCAGGAATCTTTGGTCCTGA+TGG | 0.501721 | 4.3:+52311343 | None:intergenic |
| ACCACAGAAACTTGTTCAGC+AGG | 0.503110 | 4.3:-52311815 | MS.gene001813:intron |
| GCCGTTCTTCCATGAAAGAT+GGG | 0.505531 | 4.3:+52312977 | None:intergenic |
| CCTTGATTCTGCGGATAAGA+CGG | 0.507484 | 4.3:+52312498 | None:intergenic |
| TCTAACCAATTGCTGAATCA+TGG | 0.509733 | 4.3:-52312172 | MS.gene001813:CDS |
| CACGCTGCAGAACTCACTGC+TGG | 0.509974 | 4.3:-52311967 | MS.gene001813:CDS |
| CAAATTGCAGGATTACTGTT+CGG | 0.510588 | 4.3:-52311404 | MS.gene001813:intron |
| GAGTGCTGGCCATTCTGAAT+GGG | 0.513626 | 4.3:-52312305 | MS.gene001813:CDS |
| CTCGTGCAACTACGAGCAGC+AGG | 0.514137 | 4.3:-52313289 | MS.gene001813:CDS |
| TTCAATGTCTATTATAACCT+CGG | 0.515003 | 4.3:+52312554 | None:intergenic |
| ATATTCCTGGTTCCTAATAC+CGG | 0.516943 | 4.3:+52313024 | None:intergenic |
| TGTTATGATCGATGTCTGGT+GGG | 0.519735 | 4.3:-52313257 | MS.gene001813:CDS |
| CCGATGTCAAGCACCCACTT+TGG | 0.522352 | 4.3:+52313082 | None:intergenic |
| ATCAATGTGGAGGAAATGTA+GGG | 0.527842 | 4.3:-52313126 | MS.gene001813:CDS |
| ATCTTCTACACCAATCGCTC+CGG | 0.528546 | 4.3:-52313043 | MS.gene001813:CDS |
| GGTATCCATCTCTATTATCA+AGG | 0.529551 | 4.3:+52311935 | None:intergenic |
| CATTGAACAAAAGGGACCTA+AGG | 0.530418 | 4.3:-52313230 | MS.gene001813:CDS |
| CTTGATTCTGCGGATAAGAC+GGG | 0.531810 | 4.3:+52312499 | None:intergenic |
| GACCCTGAAAAGTACAATCA+TGG | 0.532554 | 4.3:-52311382 | MS.gene001813:CDS |
| GTTCCTAATACCGGAGCGAT+TGG | 0.532915 | 4.3:+52313033 | None:intergenic |
| GTTGTTCTTTAAGTCCATCT+GGG | 0.534198 | 4.3:+52313311 | None:intergenic |
| GCACATACCTTACCGAGAAA+GGG | 0.535064 | 4.3:-52312216 | MS.gene001813:CDS |
| GCCAATACCGCCGTTCCCCT+GGG | 0.540968 | 4.3:-52311296 | MS.gene001813:CDS |
| ATGTCTGTTTCTGAATCCCA+GGG | 0.546684 | 4.3:+52311280 | None:intergenic |
| TAAAGGTCTCTGGAATTCAC+TGG | 0.547752 | 4.3:-52312008 | MS.gene001813:intron |
| TACAACCTTGATAATAGAGA+TGG | 0.550533 | 4.3:-52311940 | MS.gene001813:CDS |
| AACCAGGAATATCTGAGCAT+TGG | 0.551269 | 4.3:-52313013 | MS.gene001813:CDS |
| CTACGAGCAGCAGGCGTCGA+CGG | 0.551976 | 4.3:-52313280 | MS.gene001813:CDS |
| ATACCACCGTTAAAGCCATC+AGG | 0.554109 | 4.3:-52311358 | MS.gene001813:CDS |
| GTGTTATGATCGATGTCTGG+TGG | 0.555121 | 4.3:-52313258 | MS.gene001813:CDS |
| GTTTCTGAATCCCAGGGGAA+CGG | 0.561610 | 4.3:+52311286 | None:intergenic |
| ACGGTGTTATGATCGATGTC+TGG | 0.564978 | 4.3:-52313261 | MS.gene001813:CDS |
| GTTATGATCGATGTCTGGTG+GGG | 0.566303 | 4.3:-52313256 | MS.gene001813:CDS |
| AACAGGTACTGAGTGGAGGT+TGG | 0.567639 | 4.3:-52311719 | MS.gene001813:intron |
| GAAGTCGGTCTTGGTCCAGC+AGG | 0.569062 | 4.3:-52312534 | MS.gene001813:CDS |
| TCGCTCCGGTATTAGGAACC+AGG | 0.580310 | 4.3:-52313029 | MS.gene001813:CDS |
| AATTGCCATCCTTGATTCTG+CGG | 0.582906 | 4.3:+52312489 | None:intergenic |
| CTGGTAGTTCCCATTCAGAA+TGG | 0.585248 | 4.3:+52312296 | None:intergenic |
| GGGTATCTGAGTTCTCCTGC+TGG | 0.587322 | 4.3:+52312519 | None:intergenic |
| GAAGCTAATAAAGCTTTCCT+GGG | 0.588794 | 4.3:-52312133 | MS.gene001813:CDS |
| TCATGGAAGAACGGCCATTG+AGG | 0.592941 | 4.3:-52312969 | MS.gene001813:intron |
| GTTATAATAGACATTGAAGT+CGG | 0.595729 | 4.3:-52312549 | MS.gene001813:CDS |
| TAACATACCATTACCAAAGT+GGG | 0.596649 | 4.3:-52313095 | MS.gene001813:CDS |
| ACCCATCTTTCATGGAAGAA+CGG | 0.599054 | 4.3:-52312978 | MS.gene001813:CDS |
| ACCTGCTGAACAAGTTTCTG+TGG | 0.599130 | 4.3:+52311814 | None:intergenic |
| TTATGATCGATGTCTGGTGG+GGG | 0.599720 | 4.3:-52313255 | MS.gene001813:CDS |
| CCAAAGTGGGTGCTTGACAT+CGG | 0.611618 | 4.3:-52313082 | MS.gene001813:CDS |
| ATGTCATTCCATCAATGTGG+AGG | 0.631344 | 4.3:-52313136 | MS.gene001813:CDS |
| AATGTCTTCGAAGACCCAGA+TGG | 0.637363 | 4.3:-52313325 | MS.gene001813:CDS |
| TTAACATACCATTACCAAAG+TGG | 0.641878 | 4.3:-52313096 | MS.gene001813:CDS |
| CTTATCCGCAGAATCAAGGA+TGG | 0.644913 | 4.3:-52312494 | MS.gene001813:CDS |
| CCACAAGGTGTCAACAAAGA+CGG | 0.645003 | 4.3:-52311612 | MS.gene001813:CDS |
| TCTGAATCCCAGGGGAACGG+CGG | 0.648038 | 4.3:+52311289 | None:intergenic |
| ATACTGAATGCAAGACCACA+AGG | 0.668768 | 4.3:-52311627 | MS.gene001813:CDS |
| AGGTCTCTGGAATTCACTGG+TGG | 0.672373 | 4.3:-52312005 | MS.gene001813:CDS |
| ATCATGTCATTCCATCAATG+TGG | 0.675140 | 4.3:-52313139 | MS.gene001813:CDS |
| TTAGATCATCTGATAGACGA+AGG | 0.691757 | 4.3:+52311556 | None:intergenic |
| TGGGAACTACCAGATGACGC+TGG | 0.712299 | 4.3:-52312286 | MS.gene001813:CDS |
| TCAATGTGGAGGAAATGTAG+GGG | 0.715859 | 4.3:-52313125 | MS.gene001813:CDS |
| TATGAACAGGTACTGAGTGG+AGG | 0.727187 | 4.3:-52311723 | MS.gene001813:intron |
| TGTCTGTTTCTGAATCCCAG+GGG | 0.737797 | 4.3:+52311281 | None:intergenic |
| ATGTATGAACAGGTACTGAG+TGG | 0.748627 | 4.3:-52311726 | MS.gene001813:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTTAGAGGTTAATTATT+TGG | + | chr4.3:52312732-52312751 | None:intergenic | 20.0% |
| !! | ATTATTTGGAAGAAAAATGA+AGG | + | chr4.3:52312718-52312737 | None:intergenic | 20.0% |
| !! | TGATATATTCAAAAAGTTTG+TGG | - | chr4.3:52313249-52313268 | MS.gene001813:CDS | 20.0% |
| !!! | AAGTTTATTTAGAAGTACTA+TGG | + | chr4.3:52312123-52312142 | None:intergenic | 20.0% |
| ! | AACTAATATCCATACTGATA+TGG | - | chr4.3:52311856-52311875 | MS.gene001813:CDS | 25.0% |
| ! | CCTCTAACTATGTATAATAA+AGG | - | chr4.3:52312741-52312760 | MS.gene001813:intron | 25.0% |
| ! | CCTTTATTATACATAGTTAG+AGG | + | chr4.3:52312744-52312763 | None:intergenic | 25.0% |
| ! | GTGTTATGACAAATATTTGA+AGG | - | chr4.3:52312416-52312435 | MS.gene001813:intron | 25.0% |
| ! | GTTATAATAGACATTGAAGT+CGG | - | chr4.3:52312217-52312236 | MS.gene001813:CDS | 25.0% |
| ! | TAAATTGTGTGAAACTATCT+GGG | - | chr4.3:52312063-52312082 | MS.gene001813:intron | 25.0% |
| ! | TTAAATTGTGTGAAACTATC+TGG | - | chr4.3:52312062-52312081 | MS.gene001813:intron | 25.0% |
| ! | TTCAATGTCTATTATAACCT+CGG | + | chr4.3:52312215-52312234 | None:intergenic | 25.0% |
| !! | TTTCAACTTGTTCAAAAATG+TGG | - | chr4.3:52311588-52311607 | MS.gene001813:CDS | 25.0% |
| AAAATGTGAAGTGCATTACA+TGG | + | chr4.3:52313306-52313325 | None:intergenic | 30.0% | |
| AAGGTGATATTCGTTAATTG+CGG | + | chr4.3:52312699-52312718 | None:intergenic | 30.0% | |
| ACCGAATTCTTCAAAACAAA+CGG | - | chr4.3:52312528-52312547 | MS.gene001813:CDS | 30.0% | |
| ATTGGTTAGAATACCAAGTT+AGG | + | chr4.3:52312584-52312603 | None:intergenic | 30.0% | |
| CAAAACATGAATGTATGAAC+AGG | - | chr4.3:52313030-52313049 | MS.gene001813:CDS | 30.0% | |
| CCATGTAAGAGAATTAACTA+GGG | - | chr4.3:52311887-52311906 | MS.gene001813:CDS | 30.0% | |
| CTATGTATAATAAAGGTCTC+TGG | - | chr4.3:52312748-52312767 | MS.gene001813:intron | 30.0% | |
| TAACATACCATTACCAAAGT+GGG | - | chr4.3:52311671-52311690 | MS.gene001813:CDS | 30.0% | |
| TCTCAACCAATGATATAGAT+CGG | + | chr4.3:52311976-52311995 | None:intergenic | 30.0% | |
| TTAACATACCATTACCAAAG+TGG | - | chr4.3:52311670-52311689 | MS.gene001813:CDS | 30.0% | |
| TTTGGTTACTGGAATAAGAT+AGG | - | chr4.3:52311911-52311930 | MS.gene001813:CDS | 30.0% | |
| ! | AAGAGAATTAACTAGGGTTT+TGG | - | chr4.3:52311893-52311912 | MS.gene001813:CDS | 30.0% |
| ! | ATTTTACATGTCTTGAGATG+AGG | - | chr4.3:52312896-52312915 | MS.gene001813:intron | 30.0% |
| ! | TACAACCTTGATAATAGAGA+TGG | - | chr4.3:52312826-52312845 | MS.gene001813:intron | 30.0% |
| ! | TTTTACATGTCTTGAGATGA+GGG | - | chr4.3:52312897-52312916 | MS.gene001813:intron | 30.0% |
| !! | AAGCTTTATTAGCTTCATCT+AGG | + | chr4.3:52312629-52312648 | None:intergenic | 30.0% |
| !! | AGAAGTACTATGGTAACTAA+TGG | + | chr4.3:52312113-52312132 | None:intergenic | 30.0% |
| !! | CTTAGTCATTGATTTGAGAT+CGG | + | chr4.3:52312039-52312058 | None:intergenic | 30.0% |
| AAAATTAATGCATCCGATCC+GGG | - | chr4.3:52312086-52312105 | MS.gene001813:intron | 35.0% | |
| AACAGTAATCCTGCAATTTG+AGG | + | chr4.3:52313362-52313381 | None:intergenic | 35.0% | |
| AACCAATGATATAGATCGGA+AGG | + | chr4.3:52311972-52311991 | None:intergenic | 35.0% | |
| AAGGGAAATTCTTCCTAACT+TGG | - | chr4.3:52312568-52312587 | MS.gene001813:CDS | 35.0% | |
| ACAGTAATCCTGCAATTTGA+GGG | + | chr4.3:52313361-52313380 | None:intergenic | 35.0% | |
| ACTGTATATCTGTGCAAAGT+AGG | + | chr4.3:52312146-52312165 | None:intergenic | 35.0% | |
| AGAACATCATCAGGAATCTT+TGG | + | chr4.3:52313435-52313454 | None:intergenic | 35.0% | |
| AGAGAAAACATTGAAGTTGC+TGG | - | chr4.3:52313070-52313089 | MS.gene001813:CDS | 35.0% | |
| AGTTGTTCTTTAAGTCCATC+TGG | + | chr4.3:52311459-52311478 | None:intergenic | 35.0% | |
| ATATTCCTGGTTCCTAATAC+CGG | + | chr4.3:52311745-52311764 | None:intergenic | 35.0% | |
| ATCAATGTGGAGGAAATGTA+GGG | - | chr4.3:52311640-52311659 | MS.gene001813:CDS | 35.0% | |
| ATCATGTCATTCCATCAATG+TGG | - | chr4.3:52311627-52311646 | MS.gene001813:CDS | 35.0% | |
| ATCCTTCCGATCTATATCAT+TGG | - | chr4.3:52311967-52311986 | MS.gene001813:CDS | 35.0% | |
| CAAAGTTTAACTCACCTCAA+TGG | + | chr4.3:52311814-52311833 | None:intergenic | 35.0% | |
| CAAATTGCAGGATTACTGTT+CGG | - | chr4.3:52313362-52313381 | MS.gene001813:intron | 35.0% | |
| CACAGTAGTTTATGTGTATG+AGG | + | chr4.3:52311333-52311352 | None:intergenic | 35.0% | |
| CCCTAGTTAATTCTCTTACA+TGG | + | chr4.3:52311890-52311909 | None:intergenic | 35.0% | |
| GAAAATTAATGCATCCGATC+CGG | - | chr4.3:52312085-52312104 | MS.gene001813:intron | 35.0% | |
| GAAACAGACATGAAAGTTGA+TGG | - | chr4.3:52313498-52313517 | MS.gene001813:CDS | 35.0% | |
| GAAGCTAATAAAGCTTTCCT+GGG | - | chr4.3:52312633-52312652 | MS.gene001813:intron | 35.0% | |
| GATAACAAACCCATCTTTCA+TGG | - | chr4.3:52311780-52311799 | MS.gene001813:intron | 35.0% | |
| GCCATGTAAGAGAATTAACT+AGG | - | chr4.3:52311886-52311905 | MS.gene001813:CDS | 35.0% | |
| GCTTCATTAAGAACATCATC+AGG | + | chr4.3:52313444-52313463 | None:intergenic | 35.0% | |
| GCTTCATTTCCATATCAGTA+TGG | + | chr4.3:52311868-52311887 | None:intergenic | 35.0% | |
| GGTATCCATCTCTATTATCA+AGG | + | chr4.3:52312834-52312853 | None:intergenic | 35.0% | |
| GTCTTGCATTCAGTATGATT+TGG | + | chr4.3:52313135-52313154 | None:intergenic | 35.0% | |
| GTTGTTCTTTAAGTCCATCT+GGG | + | chr4.3:52311458-52311477 | None:intergenic | 35.0% | |
| TAGGAAGAATTTCCCTTTCT+CGG | + | chr4.3:52312565-52312584 | None:intergenic | 35.0% | |
| TATGTGTATGAGGACTTACT+GGG | + | chr4.3:52311323-52311342 | None:intergenic | 35.0% | |
| TCTAACCAATTGCTGAATCA+TGG | - | chr4.3:52312594-52312613 | MS.gene001813:CDS | 35.0% | |
| TGAAGCTAATAAAGCTTTCC+TGG | - | chr4.3:52312632-52312651 | MS.gene001813:intron | 35.0% | |
| TTAGATCATCTGATAGACGA+AGG | + | chr4.3:52313213-52313232 | None:intergenic | 35.0% | |
| TTATGTGTATGAGGACTTAC+TGG | + | chr4.3:52311324-52311343 | None:intergenic | 35.0% | |
| TTGAAGAATTCGGTAGATTC+TGG | + | chr4.3:52312522-52312541 | None:intergenic | 35.0% | |
| ! | ACTCCATACATTCGAAGTTT+TGG | + | chr4.3:52313184-52313203 | None:intergenic | 35.0% |
| ! | ATGCCATGATTGTACTTTTC+AGG | + | chr4.3:52313390-52313409 | None:intergenic | 35.0% |
| ! | CTAATTTGACTTTACATCCC+AGG | + | chr4.3:52312653-52312672 | None:intergenic | 35.0% |
| ! | TGCCATGATTGTACTTTTCA+GGG | + | chr4.3:52313389-52313408 | None:intergenic | 35.0% |
| !! | CATTGTTTTTCTTCGTAGCT+CGG | - | chr4.3:52311402-52311421 | MS.gene001813:intron | 35.0% |
| !!! | ACAGTTTTGATTGAAAGCTG+AGG | + | chr4.3:52312335-52312354 | None:intergenic | 35.0% |
| !!! | ACGAGAGACTATTTTTGCAA+TGG | + | chr4.3:52312860-52312879 | None:intergenic | 35.0% |
| !!! | AGACTATTTTTGCAATGGGA+CGG | + | chr4.3:52312855-52312874 | None:intergenic | 35.0% |
| !!! | CATACATTCGAAGTTTTGGA+GGG | + | chr4.3:52313180-52313199 | None:intergenic | 35.0% |
| !!! | CGAGAGACTATTTTTGCAAT+GGG | + | chr4.3:52312859-52312878 | None:intergenic | 35.0% |
| !!! | GCCGTTTGTTTTGAAGAATT+CGG | + | chr4.3:52312532-52312551 | None:intergenic | 35.0% |
| !!! | GTCAGATCTTTTAAAATCCG+AGG | - | chr4.3:52312195-52312214 | MS.gene001813:CDS | 35.0% |
| !!! | TTAACTAGGGTTTTGGTTAC+TGG | - | chr4.3:52311900-52311919 | MS.gene001813:CDS | 35.0% |
| AACCAGGAATATCTGAGCAT+TGG | - | chr4.3:52311753-52311772 | MS.gene001813:intron | 40.0% | |
| AATCAAGGATGGCAATTTCC+TGG | - | chr4.3:52312283-52312302 | MS.gene001813:CDS | 40.0% | |
| AATTGCCATCCTTGATTCTG+CGG | + | chr4.3:52312280-52312299 | None:intergenic | 40.0% | |
| AATTTGAGGGAAGAGGGTTA+AGG | + | chr4.3:52313348-52313367 | None:intergenic | 40.0% | |
| ACCCATCTTTCATGGAAGAA+CGG | - | chr4.3:52311788-52311807 | MS.gene001813:intron | 40.0% | |
| AGAATTTCCCTTTCTCGGTA+AGG | + | chr4.3:52312560-52312579 | None:intergenic | 40.0% | |
| ATACTGAATGCAAGACCACA+AGG | - | chr4.3:52313139-52313158 | MS.gene001813:CDS | 40.0% | |
| ATAGACATTGAAGTCGGTCT+TGG | - | chr4.3:52312223-52312242 | MS.gene001813:CDS | 40.0% | |
| ATGTCATTCCATCAATGTGG+AGG | - | chr4.3:52311630-52311649 | MS.gene001813:CDS | 40.0% | |
| ATTTGAGGGAAGAGGGTTAA+GGG | + | chr4.3:52313347-52313366 | None:intergenic | 40.0% | |
| CATCAATGTGGAGGAAATGT+AGG | - | chr4.3:52311639-52311658 | MS.gene001813:CDS | 40.0% | |
| CATTGAACAAAAGGGACCTA+AGG | - | chr4.3:52311536-52311555 | MS.gene001813:CDS | 40.0% | |
| CCTCCAAAACTTCGAATGTA+TGG | - | chr4.3:52313178-52313197 | MS.gene001813:CDS | 40.0% | |
| CGATTGGTGTAGAAGATATC+AGG | + | chr4.3:52311720-52311739 | None:intergenic | 40.0% | |
| CTACATTTCCTCCACATTGA+TGG | + | chr4.3:52311641-52311660 | None:intergenic | 40.0% | |
| CTGGAGAAAATGCACTTTCA+AGG | - | chr4.3:52313089-52313108 | MS.gene001813:CDS | 40.0% | |
| GATCACCATGATTCAGCAAT+TGG | + | chr4.3:52312602-52312621 | None:intergenic | 40.0% | |
| TCAATGTGGAGGAAATGTAG+GGG | - | chr4.3:52311641-52311660 | MS.gene001813:CDS | 40.0% | |
| TGGGGGATCATTGAACAAAA+GGG | - | chr4.3:52311528-52311547 | MS.gene001813:CDS | 40.0% | |
| TGTTATGATCGATGTCTGGT+GGG | - | chr4.3:52311509-52311528 | MS.gene001813:CDS | 40.0% | |
| ! | ACTATGGTAACTAATGGACC+CGG | + | chr4.3:52312107-52312126 | None:intergenic | 40.0% |
| ! | GACCCTGAAAAGTACAATCA+TGG | - | chr4.3:52313384-52313403 | MS.gene001813:intron | 40.0% |
| !! | ATGTATGAACAGGTACTGAG+TGG | - | chr4.3:52313040-52313059 | MS.gene001813:CDS | 40.0% |
| !! | ATGTCTGTTTCTGAATCCCA+GGG | + | chr4.3:52313489-52313508 | None:intergenic | 40.0% |
| !! | CCATACATTCGAAGTTTTGG+AGG | + | chr4.3:52313181-52313200 | None:intergenic | 40.0% |
| !! | TAAAGGTCTCTGGAATTCAC+TGG | - | chr4.3:52312758-52312777 | MS.gene001813:intron | 40.0% |
| !! | TTTGGTCCTGATGGCTTTAA+CGG | + | chr4.3:52313417-52313436 | None:intergenic | 40.0% |
| AATGTCTTCGAAGACCCAGA+TGG | - | chr4.3:52311441-52311460 | MS.gene001813:intron | 45.0% | |
| ACCTGAAACTCTCCAATTCC+AGG | + | chr4.3:52312304-52312323 | None:intergenic | 45.0% | |
| ACCTGCTGAACAAGTTTCTG+TGG | + | chr4.3:52312955-52312974 | None:intergenic | 45.0% | |
| ATACCACCGTTAAAGCCATC+AGG | - | chr4.3:52313408-52313427 | MS.gene001813:intron | 45.0% | |
| ATCCTGCAATTTGAGGGAAG+AGG | + | chr4.3:52313355-52313374 | None:intergenic | 45.0% | |
| ATCTTCTACACCAATCGCTC+CGG | - | chr4.3:52311723-52311742 | MS.gene001813:intron | 45.0% | |
| CACCAATGCTCAGATATTCC+TGG | + | chr4.3:52311758-52311777 | None:intergenic | 45.0% | |
| CCTTGATTCTGCGGATAAGA+CGG | + | chr4.3:52312271-52312290 | None:intergenic | 45.0% | |
| CTGGTAGTTCCCATTCAGAA+TGG | + | chr4.3:52312473-52312492 | None:intergenic | 45.0% | |
| CTTATCCGCAGAATCAAGGA+TGG | - | chr4.3:52312272-52312291 | MS.gene001813:CDS | 45.0% | |
| CTTGATTCTGCGGATAAGAC+GGG | + | chr4.3:52312270-52312289 | None:intergenic | 45.0% | |
| GCACATACCTTACCGAGAAA+GGG | - | chr4.3:52312550-52312569 | MS.gene001813:CDS | 45.0% | |
| GCACTCCAATCATACTCCTT+AGG | + | chr4.3:52311555-52311574 | None:intergenic | 45.0% | |
| GCCGTTCTTCCATGAAAGAT+GGG | + | chr4.3:52311792-52311811 | None:intergenic | 45.0% | |
| GGATGGCAATTTCCTGGAAT+TGG | - | chr4.3:52312289-52312308 | MS.gene001813:CDS | 45.0% | |
| GGTAAAGATGCATGCAGATC+AGG | - | chr4.3:52313270-52313289 | MS.gene001813:CDS | 45.0% | |
| GTGGGGGATCATTGAACAAA+AGG | - | chr4.3:52311527-52311546 | MS.gene001813:CDS | 45.0% | |
| GTGTTATGATCGATGTCTGG+TGG | - | chr4.3:52311508-52311527 | MS.gene001813:CDS | 45.0% | |
| GTTATGATCGATGTCTGGTG+GGG | - | chr4.3:52311510-52311529 | MS.gene001813:CDS | 45.0% | |
| TCAAGCACCCACTTTGGTAA+TGG | + | chr4.3:52311681-52311700 | None:intergenic | 45.0% | |
| TCAGGAATCTTTGGTCCTGA+TGG | + | chr4.3:52313426-52313445 | None:intergenic | 45.0% | |
| TCCTGCAATTTGAGGGAAGA+GGG | + | chr4.3:52313354-52313373 | None:intergenic | 45.0% | |
| TCCTGGAATTGGAGAGTTTC+AGG | - | chr4.3:52312300-52312319 | MS.gene001813:CDS | 45.0% | |
| TTATGATCGATGTCTGGTGG+GGG | - | chr4.3:52311511-52311530 | MS.gene001813:CDS | 45.0% | |
| TTTGAGGGAAGAGGGTTAAG+GGG | + | chr4.3:52313346-52313365 | None:intergenic | 45.0% | |
| ! | ACCACAGAAACTTGTTCAGC+AGG | - | chr4.3:52312951-52312970 | MS.gene001813:intron | 45.0% |
| ! | ACTGGGAGCATGACATAAAC+TGG | + | chr4.3:52311306-52311325 | None:intergenic | 45.0% |
| ! | AGGGACCTAAGGAGTATGAT+TGG | - | chr4.3:52311547-52311566 | MS.gene001813:CDS | 45.0% |
| ! | CCACAAGGTGTCAACAAAGA+CGG | - | chr4.3:52313154-52313173 | MS.gene001813:CDS | 45.0% |
| !! | ACGGTGTTATGATCGATGTC+TGG | - | chr4.3:52311505-52311524 | MS.gene001813:CDS | 45.0% |
| !! | CATGTCTGTTTCTGAATCCC+AGG | + | chr4.3:52313490-52313509 | None:intergenic | 45.0% |
| !! | TATGAACAGGTACTGAGTGG+AGG | - | chr4.3:52313043-52313062 | MS.gene001813:CDS | 45.0% |
| !! | TGTCTGTTTCTGAATCCCAG+GGG | + | chr4.3:52313488-52313507 | None:intergenic | 45.0% |
| ACACCAATCGCTCCGGTATT+AGG | - | chr4.3:52311730-52311749 | MS.gene001813:intron | 50.0% | |
| ACCCTCTTCCCTCAAATTGC+AGG | - | chr4.3:52313350-52313369 | MS.gene001813:intron | 50.0% | |
| CCAAAGTGGGTGCTTGACAT+CGG | - | chr4.3:52311684-52311703 | MS.gene001813:CDS | 50.0% | |
| CCGTCTTATCCGCAGAATCA+AGG | - | chr4.3:52312268-52312287 | MS.gene001813:CDS | 50.0% | |
| CCGTCTTTGTTGACACCTTG+TGG | + | chr4.3:52313157-52313176 | None:intergenic | 50.0% | |
| GGCACATACCTTACCGAGAA+AGG | - | chr4.3:52312549-52312568 | MS.gene001813:CDS | 50.0% | |
| GGCCGTTCTTCCATGAAAGA+TGG | + | chr4.3:52311793-52311812 | None:intergenic | 50.0% | |
| GTGAGTTCTGCAGCGTGATT+CGG | + | chr4.3:52312796-52312815 | None:intergenic | 50.0% | |
| GTTCCTAATACCGGAGCGAT+TGG | + | chr4.3:52311736-52311755 | None:intergenic | 50.0% | |
| GTTTCTGAATCCCAGGGGAA+CGG | + | chr4.3:52313483-52313502 | None:intergenic | 50.0% | |
| TCATGGAAGAACGGCCATTG+AGG | - | chr4.3:52311797-52311816 | MS.gene001813:intron | 50.0% | |
| ! | GGTAACTAATGGACCCGGAT+CGG | + | chr4.3:52312102-52312121 | None:intergenic | 50.0% |
| !! | AACAGGTACTGAGTGGAGGT+TGG | - | chr4.3:52313047-52313066 | MS.gene001813:CDS | 50.0% |
| !! | AGGTCTCTGGAATTCACTGG+TGG | - | chr4.3:52312761-52312780 | MS.gene001813:intron | 50.0% |
| !! | GAGTGCTGGCCATTCTGAAT+GGG | - | chr4.3:52312461-52312480 | MS.gene001813:intron | 50.0% |
| CCGATGTCAAGCACCCACTT+TGG | + | chr4.3:52311687-52311706 | None:intergenic | 55.0% | |
| GGGTATCTGAGTTCTCCTGC+TGG | + | chr4.3:52312250-52312269 | None:intergenic | 55.0% | |
| TCGCTCCGGTATTAGGAACC+AGG | - | chr4.3:52311737-52311756 | MS.gene001813:intron | 55.0% | |
| TGGGAACTACCAGATGACGC+TGG | - | chr4.3:52312480-52312499 | MS.gene001813:CDS | 55.0% | |
| TTGTACGTGCCAGCGTCATC+TGG | + | chr4.3:52312492-52312511 | None:intergenic | 55.0% | |
| !! | CGAGTGCTGGCCATTCTGAA+TGG | - | chr4.3:52312460-52312479 | MS.gene001813:intron | 55.0% |
| !! | GGTCCTGATGGCTTTAACGG+TGG | + | chr4.3:52313414-52313433 | None:intergenic | 55.0% |
| AAAGCAGCTGCAGCGAGTGC+TGG | - | chr4.3:52312447-52312466 | MS.gene001813:intron | 60.0% | |
| CACGCTGCAGAACTCACTGC+TGG | - | chr4.3:52312799-52312818 | MS.gene001813:intron | 60.0% | |
| CTCGTGCAACTACGAGCAGC+AGG | - | chr4.3:52311477-52311496 | MS.gene001813:intron | 60.0% | |
| GAAGTCGGTCTTGGTCCAGC+AGG | - | chr4.3:52312232-52312251 | MS.gene001813:CDS | 60.0% | |
| TCTGAATCCCAGGGGAACGG+CGG | + | chr4.3:52313480-52313499 | None:intergenic | 60.0% | |
| AGCCAATACCGCCGTTCCCC+TGG | - | chr4.3:52313469-52313488 | MS.gene001813:CDS | 65.0% | |
| GCCAATACCGCCGTTCCCCT+GGG | - | chr4.3:52313470-52313489 | MS.gene001813:CDS | 65.0% | |
| TCCCAGGGGAACGGCGGTAT+TGG | + | chr4.3:52313474-52313493 | None:intergenic | 65.0% | |
| !! | CTACGAGCAGCAGGCGTCGA+CGG | - | chr4.3:52311486-52311505 | MS.gene001813:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 52311264 | 52313524 | 52311264 | ID=MS.gene001813 |
| chr4.3 | mRNA | 52311264 | 52313524 | 52311264 | ID=MS.gene001813.t1;Parent=MS.gene001813 |
| chr4.3 | exon | 52313465 | 52313524 | 52313465 | ID=MS.gene001813.t1.exon1;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52313465 | 52313524 | 52313465 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| chr4.3 | exon | 52312970 | 52313368 | 52312970 | ID=MS.gene001813.t1.exon2;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52312970 | 52313368 | 52312970 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| chr4.3 | exon | 52312467 | 52312631 | 52312467 | ID=MS.gene001813.t1.exon3;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52312467 | 52312631 | 52312467 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| chr4.3 | exon | 52312108 | 52312371 | 52312108 | ID=MS.gene001813.t1.exon4;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52312108 | 52312371 | 52312108 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| chr4.3 | exon | 52311816 | 52312025 | 52311816 | ID=MS.gene001813.t1.exon5;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52311816 | 52312025 | 52311816 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| chr4.3 | exon | 52311497 | 52311736 | 52311497 | ID=MS.gene001813.t1.exon6;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52311497 | 52311736 | 52311497 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| chr4.3 | exon | 52311264 | 52311416 | 52311264 | ID=MS.gene001813.t1.exon7;Parent=MS.gene001813.t1 |
| chr4.3 | CDS | 52311264 | 52311416 | 52311264 | ID=cds.MS.gene001813.t1;Parent=MS.gene001813.t1 |
| Gene Sequence |
| Protein sequence |
