AlfalfaGEDB | MS.gene002077

M. sativa cultivar XinJiangDaYe / MS.gene002077

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF19160.3

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002077.t1	AES63273.2	97	639	13	1	1	639	12	644	0.00E+00	1224.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002077.t1	O04086	63.0	638	214	9	4	639	8	625	3.1e-225	782.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002077.t1	A0A072VE54	97.0	639	13	1	1	639	12	644	0.0e+00	1224.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002077	MS.gene036544	PPI
MS.gene002077	MS.gene041504	PPI
MS.gene002077	MS.gene060354	PPI
MS.gene002077	MS.gene035276	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002077.t1	MTR_2g006910	97.027	639	13	1	1	639	12	644	0.0	1286
MS.gene002077.t1	MTR_2g006910	97.027	639	13	1	1	639	12	644	0.0	1285
MS.gene002077.t1	MTR_8g088780	63.107	618	217	7	3	615	10	621	0.0	781
MS.gene002077.t1	MTR_1g029610	54.943	617	245	12	3	618	6	590	0.0	645
MS.gene002077.t1	MTR_8g088760	54.010	611	226	10	18	615	20	588	0.0	625
MS.gene002077.t1	MTR_7g094100	37.774	593	326	17	20	606	21	576	2.13e-113	354
MS.gene002077.t1	MTR_7g094100	37.774	593	326	17	20	606	21	576	2.32e-113	354
MS.gene002077.t1	MTR_1g089600	51.703	323	138	6	285	606	282	587	2.67e-103	328
MS.gene002077.t1	MTR_4g076660	90.977	133	11	1	88	220	1	132	1.37e-77	244
MS.gene002077.t1	MTR_2g073540	40.710	366	175	9	238	599	379	706	2.68e-75	256

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002077.t1	AT1G11050	63.391	631	195	9	18	639	22	625	0.0	783
MS.gene002077.t1	AT2G48010	38.552	594	315	16	21	606	23	574	1.32e-118	367
MS.gene002077.t1	AT1G29720	42.154	325	166	4	284	608	658	960	3.24e-76	263
MS.gene002077.t1	AT1G60800	41.311	351	175	9	245	593	189	510	1.55e-75	252
MS.gene002077.t1	AT1G60800	41.026	351	176	8	245	593	256	577	9.88e-75	252
MS.gene002077.t1	AT1G70530	38.228	395	206	10	217	610	252	609	4.50e-74	250
MS.gene002077.t1	AT1G56145	37.647	425	213	12	196	613	496	875	1.43e-73	254
MS.gene002077.t1	AT1G29730	43.789	322	159	5	282	603	625	924	2.06e-73	254
MS.gene002077.t1	AT5G45780	38.579	394	206	9	206	595	173	534	2.25e-73	246
MS.gene002077.t1	AT1G56145	37.647	425	213	12	196	613	599	978	3.66e-73	254

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Find 138 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTTCCATTATGCTCTT+AGG	0.269768	2.3:+75479706	None:intergenic
AACTCACGGATACCTAGCGC+CGG	0.639614	2.3:-75479953	MS.gene002077:CDS
AAGAATTTCATAGGGAGAGG+TGG	0.545332	2.3:-75480474	MS.gene002077:CDS
AAGAGTGATGTATACAGCTT+TGG	0.525424	2.3:-75479901	MS.gene002077:CDS
AAGAGTTCCAATGAATTCTT+AGG	0.278309	2.3:+75481288	None:intergenic
AAGCAAACAAATCATTGTCT+TGG	0.480711	2.3:-75480176	MS.gene002077:CDS
AAGGTTCTAGGCGTAGGTTG+AGG	0.630785	2.3:-75480563	MS.gene002077:CDS
AAGTTCCTCAAATTCCAGAT+AGG	0.461563	2.3:-75479594	MS.gene002077:CDS
AATGAGAATTATGGTGATAA+AGG	0.351808	2.3:-75480279	MS.gene002077:CDS
AATTCTATGTTCTCATGTAA+TGG	0.453868	2.3:-75479671	MS.gene002077:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTTCCAATGAATTCTT+AGG	+	chr2.3:75479572-75479591	None:intergenic	30.0%
AAGCAAACAAATCATTGTCT+TGG	-	chr2.3:75480681-75480700	MS.gene002077:CDS	30.0%
ACTACTTGATGAAGATATGA+GGG	-	chr2.3:75480808-75480827	MS.gene002077:CDS	30.0%
ACTATGTCCTAAGAATTCAT+TGG	-	chr2.3:75479562-75479581	MS.gene002077:CDS	30.0%
ATATCCCTATGATAAATTGC+AGG	+	chr2.3:75480773-75480792	None:intergenic	30.0%
CCATCGTTATTATAAAATGC+AGG	+	chr2.3:75481307-75481326	None:intergenic	30.0%
CGTTATTATAAAATGCAGGA+TGG	+	chr2.3:75481303-75481322	None:intergenic	30.0%
CTTTGTTGGGTTTATATGTT+TGG	-	chr2.3:75480204-75480223	MS.gene002077:CDS	30.0%
GAGAGATAACAAATTGAAGA+GGG	+	chr2.3:75479812-75479831	None:intergenic	30.0%
GTATTGAAACTGTTCATGAT+TGG	-	chr2.3:75479847-75479866	MS.gene002077:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	75479480	75481399	75479480	ID=MS.gene002077
chr2.3	mRNA	75479480	75481399	75479480	ID=MS.gene002077.t1;Parent=MS.gene002077
chr2.3	exon	75479480	75481399	75479480	ID=MS.gene002077.t1.exon1;Parent=MS.gene002077.t1
chr2.3	CDS	75479480	75481399	75479480	ID=cds.MS.gene002077.t1;Parent=MS.gene002077.t1

Gene Sequence

>MS.gene002077

ATGGACATGTTGATGATGAGTTTAAGGACTATTTCAGCAGCTCCTACTCCTTCTCCTTCATCTACATGTCCTATGGACCTCAACTATGTCCTAAGAATTCATTGGAACTCTTCAGCTTGTCAAAATTTCAAGTCTTTATCATCCAAAGAAACTAGCACATGTTGTGCATCAGTTTTGTCTCTTTTTGGAATAGGATTTGCACAACATCTAAAAGAAACTTCACAGTTCAATCTTCAAGACCTTCAAACTTCAAAGTCATGCATGCAAGATTTTCAATCAAAGCTTAACTCTTTATCACTTTACAACAACTTGGTCAACTCTTGTTTTGACCCTCTTCAATTTGTTATCTCTCGTAACATATGTGCAGGTATTGAAACTGTTCATGATTGGAATGAGAAAGTGGGTCAGAATTCATCTTTGAATACTGCTTGCAAACCAGATCTCACTGAACTTTCTCAGTGTGATGTCTGTGTTTCTGCTGGATTACAGGTTAAGCAGAAGCTTGTTTCAATTAGTGGTAATTCTTCTCAGTCATTGAGTTGTTTTTACTTTGCAATTCTTTATGCTGCTGGAATTGTGAATGAGTTTGGACCTGAAAGTAATGGTGCTGTTACTTGTGCTTTTAGTTTACCTGTTTATTCACAAGTTGGTTCTGGTTCAAAGGGTCATCAGGGTCTTGTGTTTGGGTTAACAGGAGCTGGTGTTGCTTTGTTTGTTATGTGTTCTTTGTTGGGTTTATATGTTTGGTGTGATAGGAAACGTATGAGGAAGAGAAAGCTTGAAACTTTTCAATTTGATTTTGATCCTGAGGAACAAGGTTCTAGGCGTAGGTTGAGGCCTAATACAGGGTCAATTTGGTACAAAATTCAGGAACTTGAGAAAGCTACTGATAATTTTTCATCCAAGAATTTCATAGGGAGAGGTGGGTTTGGTTTGGTTTTCAAAGGAACTTTGGCTGATGGATCTGTTGTTGCTGTTAAGAGGGTTTTAGAATCTGATTTTCAAGGGGATGTTGAGTTTTGTAATGAGGTTGAGATAATTAGTAATTTGAAGCACAGGAATCTGTTACCTCTTAGAGGTTGTTGTGTGGTTGATGAAAATGAGAATTATGGTGATAAAGGAAGTCAAAGATACCTTGTTTATGATTACATGCCAAATGGAAACTTGGAAGATCATCTTTTTGTATCAAAGGATCCTAAAAAAGCAAACAAATCATTGTCTTGGCCTCTTCGAAAAAACATAATCTTGGATGTCGGAAAAGGGTTGGCTTATTTACACTATGGAGTTAAGCCTGCAATTTATCATAGGGATATCAAAGCTACCAATATACTACTTGATGAAGATATGAGGGCAAGAGTTGCTGATTTTGGTCTTGCTAAACAAAGTAGGGAGGGTCAGTCTCATCTCACTACTAGAGTGGCCGGAACTCACGGATACCTAGCGCCGGAATATGCGCTCTATGGTCAGCTGACTGAGAAGAGTGATGTATACAGCTTTGGTGTGGTTGTTTTGGAGATAATGTGTGGTAGGAAGGCTCTTGATTTGTCCTCATCGGGCTCTCCGCGAGCGTTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAATCGGGGAAAATAAACGAGGCTTTGGATGCTTCTCTTCTGAAAGATGATAACACTGCTAGTGCAAATCCTAAGAGCATAATGGAAAGGTTTTTGCTTGTTGGAATTCTATGTTCTCATGTAATGGTTGCTTTGAGGCCAACAATTTCTGATGCTTTGAAGATGTTGGAAGGGGATATTGAAGTTCCTCAAATTCCAGATAGGCCTATGCCTCTTGGCCATCCTGCATTTTATAATAACGATGGCAACGGCAACACTTTTAGCATATCTCCGGCATTAAGCGGCCTCAAATTACCCGCTGGCGACATGCTCAGGTAA

Protein sequence

>MS.gene002077.t1

MDMLMMSLRTISAAPTPSPSSTCPMDLNYVLRIHWNSSACQNFKSLSSKETSTCCASVLSLFGIGFAQHLKETSQFNLQDLQTSKSCMQDFQSKLNSLSLYNNLVNSCFDPLQFVISRNICAGIETVHDWNEKVGQNSSLNTACKPDLTELSQCDVCVSAGLQVKQKLVSISGNSSQSLSCFYFAILYAAGIVNEFGPESNGAVTCAFSLPVYSQVGSGSKGHQGLVFGLTGAGVALFVMCSLLGLYVWCDRKRMRKRKLETFQFDFDPEEQGSRRRLRPNTGSIWYKIQELEKATDNFSSKNFIGRGGFGLVFKGTLADGSVVAVKRVLESDFQGDVEFCNEVEIISNLKHRNLLPLRGCCVVDENENYGDKGSQRYLVYDYMPNGNLEDHLFVSKDPKKANKSLSWPLRKNIILDVGKGLAYLHYGVKPAIYHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDLSSSGSPRAFLITDWAWSLVKSGKINEALDASLLKDDNTASANPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPAFYNNDGNGNTFSISPALSGLKLPAGDMLR