AlfalfaGEDB | MS.gene002333

M. sativa cultivar XinJiangDaYe / MS.gene002333

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20 PF08276.14 PF11883.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002333.t1	RHN71807.1	91.6	822	69	0	1	822	22	843	0.00E+00	1525

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002333.t1	Q9LPZ9	48.5	824	393	16	12	822	25	830	1.6e-213	744.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene002333.t1	A0A396J9G3	91.6	822	69	0	1	822	22	843	0.0e+00	1525.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene002333	MS.gene40080	PPI
MS.gene002333	MS.gene028590	PPI
MS.gene002333	MS.gene28694	PPI
MS.gene009019	MS.gene002333	PPI
MS.gene028585	MS.gene002333	PPI
MS.gene028586	MS.gene002333	PPI
MS.gene028589	MS.gene002333	PPI
MS.gene028591	MS.gene002333	PPI
MS.gene028592	MS.gene002333	PPI
MS.gene028593	MS.gene002333	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene002333.t1	MTR_2g011280	94.282	822	45	1	1	822	22	841	1570
MS.gene002333.t1	MTR_2g011340	89.429	823	76	6	1	821	23	836	1508
MS.gene002333.t1	MTR_2g011270	85.176	823	119	3	1	822	1	821	1445
MS.gene002333.t1	MTR_2g011230	77.223	821	176	4	6	822	19	832	1264
MS.gene002333.t1	MTR_2g011240	75.210	835	173	9	1	822	1	814	1236
MS.gene002333.t1	MTR_7g056430	56.153	837	308	15	6	822	362	1159	935
MS.gene002333.t1	MTR_7g056663	54.881	840	346	12	1	822	20	844	912
MS.gene002333.t1	MTR_7g056667	56.053	826	329	13	11	822	27	832	908
MS.gene002333.t1	MTR_7g056510	55.516	834	335	12	3	822	11	822	908
MS.gene002333.t1	MTR_7g056680	55.461	824	332	12	6	822	24	819	899

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene002333.t1	AT1G11330	49.337	829	381	17	12	822	33	840	792
MS.gene002333.t1	AT1G11330	49.157	830	383	17	12	822	33	842	790
MS.gene002333.t1	AT1G11300	50.980	816	358	17	18	822	36	820	786
MS.gene002333.t1	AT1G11300	50.368	816	348	17	18	822	36	805	773
MS.gene002333.t1	AT1G11350	49.758	828	377	17	12	822	25	830	757
MS.gene002333.t1	AT1G11303	49.020	816	374	18	18	822	36	820	754
MS.gene002333.t1	AT1G11330	50.206	729	326	16	12	723	33	741	701
MS.gene002333.t1	AT4G21390	45.465	849	409	21	6	822	23	849	700
MS.gene002333.t1	AT1G61610	44.272	838	429	15	4	822	24	842	689
MS.gene002333.t1	AT4G21380	43.341	856	413	20	6	822	28	850	660

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Find 148 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGGGAAATACAAGA+AGG	0.624651	2.3:+72440093	MS.gene002333:CDS
AAAACGCATATACATAATTG+AGG	0.517669	2.3:+72439923	MS.gene002333:CDS
AAAAGACTATCAAAGGCTTC+AGG	0.406381	2.3:+72439608	MS.gene002333:CDS
AAAATCTGATCCACATAATC+AGG	0.362096	2.3:-72440572	None:intergenic
AAACCAATACAAGATTCGTC+TGG	0.511116	2.3:+72437133	MS.gene002333:CDS
AAACGCATATACATAATTGA+GGG	0.547526	2.3:+72439924	MS.gene002333:CDS
AAAGAGAAGTTTCCAATAGC+TGG	0.392800	2.3:-72437771	None:intergenic
AAATCAGATGTATTTAGTTT+TGG	0.252441	2.3:+72440266	MS.gene002333:CDS
AACACAACAAATCGCTACAT+AGG	0.589676	2.3:+72437061	MS.gene002333:CDS
AACCCTTCCATTGCATATTC+TGG	0.204068	2.3:-72440233	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATCTGACTTTGGCA+TGG	+	chr2.3:72440049-72440068	MS.gene002333:CDS	30.0%
AAAATCTGATCCACATAATC+AGG	-	chr2.3:72440575-72440594	None:intergenic	30.0%
AACCCAAAAATATCTGACTT+TGG	+	chr2.3:72440044-72440063	MS.gene002333:CDS	30.0%
AATAACAGGCAAGGTAATAT+GGG	+	chr2.3:72437641-72437660	MS.gene002333:intron	30.0%
AATTGTTAGAATCGCATCAA+CGG	-	chr2.3:72438919-72438938	None:intergenic	30.0%
ACTGCTTATGCATTTGATAA+TGG	+	chr2.3:72438398-72438417	MS.gene002333:CDS	30.0%
AGAATCTTTGATGAATTGAG+AGG	-	chr2.3:72436987-72437006	None:intergenic	30.0%
ATTATCTCATGGTTAGTGTT+AGG	-	chr2.3:72439127-72439146	None:intergenic	30.0%
CAAGCAACAAATGCAATAAA+CGG	-	chr2.3:72437477-72437496	None:intergenic	30.0%
CAATCAATCCAACATCATAT+GGG	+	chr2.3:72437096-72437115	MS.gene002333:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	72436944	72440814	72436944	ID=MS.gene002333
chr2.3	mRNA	72436944	72440814	72436944	ID=MS.gene002333.t1;Parent=MS.gene002333
chr2.3	exon	72436944	72437319	72436944	ID=MS.gene002333.t1.exon1;Parent=MS.gene002333.t1
chr2.3	CDS	72436944	72437319	72436944	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72437649	72438518	72437649	ID=MS.gene002333.t1.exon2;Parent=MS.gene002333.t1
chr2.3	CDS	72437649	72438518	72437649	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72438631	72438750	72438631	ID=MS.gene002333.t1.exon3;Parent=MS.gene002333.t1
chr2.3	CDS	72438631	72438750	72438631	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72439291	72439493	72439291	ID=MS.gene002333.t1.exon4;Parent=MS.gene002333.t1
chr2.3	CDS	72439291	72439493	72439291	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72439575	72439785	72439575	ID=MS.gene002333.t1.exon5;Parent=MS.gene002333.t1
chr2.3	CDS	72439575	72439785	72439575	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72439892	72440129	72439892	ID=MS.gene002333.t1.exon6;Parent=MS.gene002333.t1
chr2.3	CDS	72439892	72440129	72439892	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72440220	72440367	72440220	ID=MS.gene002333.t1.exon7;Parent=MS.gene002333.t1
chr2.3	CDS	72440220	72440367	72440220	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1
chr2.3	exon	72440512	72440814	72440512	ID=MS.gene002333.t1.exon8;Parent=MS.gene002333.t1
chr2.3	CDS	72440512	72440814	72440512	ID=cds.MS.gene002333.t1;Parent=MS.gene002333.t1

Gene Sequence

>MS.gene002333

ATGATCAAAATTGGTAGTGCTTCTATGTACACAATTACATCCTCTCAATTCATCAAAGATTCTGAAACTATAAGCTCAAATGACGATGCATTCAAGCTTGGATTCTTCAGCCCCGTGAACACAACAAATCGCTACATAGGAATCTGGTATCTCAATCAATCCAACATCATATGGGTAGCCAACAGAGAAAAACCAATACAAGATTCGTCTGGAGTTATCACCATATCTGATGACAACACAAACCTTGTAGTACTGAATGGACAAAAACATGTTATATGGTCATCAAATGTCTCAAGTAATTTGGCATCCTCAAATTCTAATGTCACTGCTCAGCTTCAAAATACTGGAAACCTCGTCTTGCAGGAAGACACTACAGGTATTAGAAATATGATTAGTTAGTAGTTAATTTATAGTTATAGTTTCTTATTATTAGTTAACTTACAAGTATTATAATTTTTGTTTGTGCTGTTTTGCCTTAGTGGCTGGATTTGATGTAATAACTTTGTTGGCTGGGTGCAGGCCCTTTCCTGCCGTTTATTGCATTTGTTGCTTGATCAAAAAAAAAAAAAAGAGATACGTGTAGAAAGTAAAATAGAAATCACATAGTTTAATGAAAATGCATGTTTATATAGAGAATTCGTTGTTAAATTTAATAATCGGTTAAACAATTAATTAACTATTAACTGATTATATCTCTAATAACAGGCAAGGTAATATGGGAGAGTTTCAAACATCCATCTGATGCATTCCTCCCAAATATGATAATTAGCACAAACCAAAGAACAGGGGAAAAAGTAAAATACACTTCTTGGAAAACTCCTTCGGATCCAGCTATTGGAAACTTCTCTTTAAGCCTTGAGCGTCTCAACGCTCCTGAAGTGTTTGTATGGAACCAAACAAAGCCTTACTGGCGCTCAGGTCCATGGAATGGTCAAGTGCTTCTTGGTTTACCAAGTCGTTTGTTGTACGCTTCTGAATATCTAACACTTTCCATTGGAAGGAAAGATAATGGAAGTATTGTTGAGACTACCTATACACTGCTGAACAGTTCTTTCTTTGCAATTGCTACAGTGAATTTTGAAGGCAAGCTGGTTTACACTTCATGGATGAATGGGCATCAAGTTGGGACGACCGTTGTTCAAGAAAATGAATGTGATATTTATGGTTTTTGTGGTCCTAATGGAAGCTGTGATCTGACAAACTCACCAATATGCACATGTTTGAAAGGTTTTGAGCCGCGAAATGTGGATGAATGGAATAGACAAAATTGGATAAGTGGGTGTGTGAGAAAGGCCTCACTGCAATGTGAGAGGGTGAAGTACAATGAAAGTGAATTAGGCGGCAAAGGAGATGGTTTTGTGAAGCTAGAGATGACAAAAATACCAGATTTTGTACAACAATCATATCTTTTTGCTGATGCATGTAGAACTGAGTGCTTGAATAATTGTAATTGCACTGCTTATGCATTTGATAATGGAATTCGTTGCTTAACTTGGAGTGGTAAATTAATTGACATAGTCAGGTTTTCAAATGGAGGCATTGATCTTTACATACGCCAAGCGTATTCAGAACTTCGTGAGTATTCATAGTTCATAGCTATTTTCTTTTTCTGTGGTGAATTTATTAATTATTATAGAAGTTAAGTTCTAGTCAAATTACAATATTGTGATCTAAATTATGTTAACAGCTACAGATAGAGATGGGAAGAGAAATGTTACAAAAATCATCATATCAATGGGGTTAGTGGGAGCAATTATTTTTGCTACCGCATCCTATTTCTTATGGTCATGGGCTTCAAAATATTCAGGTATCTCTATAATTTTCACGTTTTCTTAATTATTTGCTTACTTATAATCATTAATTAAACTAATAGGTAACATGTGTAAAGCTATTTTTAATTGAAGAAATAAAGAAACATCCTTCAAAATGATCTTACTTAATTAGAAGTGTGTCCAATTTGGATTTGTATTATCCGTTGATGCGATTCTAACAATTGCAAATCTCAACTTTTATATCAAGATTAAACATTTCATTTTGAAATCAAAGAAGTGAAGTGCTATAAACACTATATTTTTAAAATTAACTTTTTATTGGGTGAAATCACTATTTTATATGGAGTCCGTTTCCAAAGTGTGAGACCAACATTGATATCACTCAATAAGTATTAGAAAAAGAGTGTTCCTAACACTAACCATGAGATAATTAGTTTTGCAAATATGGCAGTCATTATAAGACAAAGCAAGTATATGTTAACCTATGCCTGCAATTTTTATAATAATAATAAAATGTTTGTGTTTCTATTTATTTATTCTTTTGATTATGAATTTGGTATTATAATTGAAATCAGCAAGAAGGAAAATAGAAAAGATGTTGGTGTTGAGCACAAGGCAAATCCATCCAGAAAACCGAAATGCAAGTCTTATTGGAAATGTGAAACAAGTCAAAATAGAGGACCTACCTTTATTTGAGTTTCAGAAAATTTCAACCGCAACAAATAATTTCGGTTCAGCTAATAAGATTGGCCAAGGTGGTTTTGGTTTAGTGTACAAGGTAAACTAAGTCATGTGAAGTTTTTATCTTTGATTAATATTTTGTATTATACATTCTCATATTTCCTGAAAAATATATCAGGGAGAATTACAAGATGGACTGGAAATAGCAGTGAAAAGACTATCAAAGGCTTCAGGACAGGGACTAGAAGAATTTATGAATGAAGTAATTGTGATTTCCAAGCTTCAACATCGCAATCTTGTTAGACTTTTGGGCTGTTGCATCGAAGGGGAAGAAAAGATGTTGATCTATGAGTACATGCCTAATAACAGTTTAGATTTCTATCTATTTGGTTAGCACATCTTAACTTGTTCTTTCTTGAAGTGATTTTAATACCGAAGAAAAGAAGTTGCATTTTACTAGTTATGATTAGTTAGTTACTTACCGATGCTCTACAGATCCAATAAAAAAGAAGATTTTAGATTGGCAAAAACGCATATACATAATTGAGGGAGTCTCTCGCGGACTGCTTTATCTTCATAGAGATTCGAGATTAAGAATAATACACAGAGACCTAAAGTCGAGTAATATTTTGTTGGATGGAGAACTAAACCCAAAAATATCTGACTTTGGCATGGCTCGAATCTTCGGAGGTAGTGAAAACGAGGGAAATACAAGAAGGATTGTGGGAACATAGTAAGCATGTTTTATCTTTATATATGTTCTTATAATATTGCAATTAAAGAGACAATATATATTTAATTTGATAATGAAATTTAAATGCAGTGGATACATGTCTCCAGAATATGCAATGGAAGGGTTATTTTCAGAGAAATCAGATGTATTTAGTTTTGGGGTTTTGCTCTTGGAGATAATAAGTGGTAGGAAAAACACAAGTTTCTATAATCATCAAGCACTCACTCTCTTAGGATATGTAAGTCTTTTTAATTTTTCGCTCATAGATTCATAGTACAACTTAATATTCTGTTTTTATAATAATGATAATAATTTATTTTCTCTAATTTATATAAATCTATATTAGTCTTTATTCTTCTTTCTTTCTTCGGTTTTTTTCAAGACATGGAAACTATGGAATGAAGGTGACGCTGTAGCTTTGATAGATCAAGAAATATGTAATCCTGATTATGTGGATCAGATTTTGAGATGCATACATATTGGACTTCTATGTGTGCAAGAAATTGCAAAGGAGAGACCTACTATGGCCACAGTTGTTTCAATGCTTAATAGTGAGATTGTTAAACTTCCTCCCCCATCTCAACCTGCATTCCTTCTAAGTCAGACTGAGCATAGAGCAGACTCAGCTCAACAAAATCACGACTCGAATAACAGTGTCACTGTCACAAGCTTGCAAGGCAGATAG

Protein sequence

>MS.gene002333.t1

MIKIGSASMYTITSSQFIKDSETISSNDDAFKLGFFSPVNTTNRYIGIWYLNQSNIIWVANREKPIQDSSGVITISDDNTNLVVLNGQKHVIWSSNVSSNLASSNSNVTAQLQNTGNLVLQEDTTGKVIWESFKHPSDAFLPNMIISTNQRTGEKVKYTSWKTPSDPAIGNFSLSLERLNAPEVFVWNQTKPYWRSGPWNGQVLLGLPSRLLYASEYLTLSIGRKDNGSIVETTYTLLNSSFFAIATVNFEGKLVYTSWMNGHQVGTTVVQENECDIYGFCGPNGSCDLTNSPICTCLKGFEPRNVDEWNRQNWISGCVRKASLQCERVKYNESELGGKGDGFVKLEMTKIPDFVQQSYLFADACRTECLNNCNCTAYAFDNGIRCLTWSGKLIDIVRFSNGGIDLYIRQAYSELPTDRDGKRNVTKIIISMGLVGAIIFATASYFLWSWASKYSARRKIEKMLVLSTRQIHPENRNASLIGNVKQVKIEDLPLFEFQKISTATNNFGSANKIGQGGFGLVYKGELQDGLEIAVKRLSKASGQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNNSLDFYLFDPIKKKILDWQKRIYIIEGVSRGLLYLHRDSRLRIIHRDLKSSNILLDGELNPKISDFGMARIFGGSENEGNTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYNHQALTLLGYTWKLWNEGDAVALIDQEICNPDYVDQILRCIHIGLLCVQEIAKERPTMATVVSMLNSEIVKLPPPSQPAFLLSQTEHRADSAQQNHDSNNSVTVTSLQGR