AlfalfaGEDB | MS.gene052588

M. sativa cultivar XinJiangDaYe / MS.gene052588

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00954.23 PF01453.27 PF07714.20 PF08276.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052588.t1	XP_003608283.2	95.2	858	40	1	1	858	1	857	0.00E+00	1682.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052588.t1	Q9ZT07	48.8	838	408	14	32	858	6	833	8.4e-218	758.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene052588.t1	G7JSW6	95.2	858	40	1	1	858	1	857	0.0e+00	1682.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052588	MS.gene28686	0.855897	4.63E-62	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000571	MS.gene052588	PPI
MS.gene000581	MS.gene052588	PPI
MS.gene002332	MS.gene052588	PPI
MS.gene002334	MS.gene052588	PPI
MS.gene01313	MS.gene052588	PPI
MS.gene02281	MS.gene052588	PPI
MS.gene02283	MS.gene052588	PPI
MS.gene02284	MS.gene052588	PPI
MS.gene022902	MS.gene052588	PPI
MS.gene022918	MS.gene052588	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene052588.t1	MTR_4g091690	95.221	858	40	1	1	858	1	857	1661
MS.gene052588.t1	MTR_4g091840	82.517	858	143	3	1	858	1	851	1462
MS.gene052588.t1	MTR_4g091780	84.060	803	122	5	27	827	11	809	1393
MS.gene052588.t1	MTR_4g091760	81.655	834	137	4	38	858	16	846	1388
MS.gene052588.t1	MTR_4g091820	80.265	831	155	4	1	831	1	822	1378
MS.gene052588.t1	MTR_4g091850	78.347	859	173	6	1	858	1	847	1334
MS.gene052588.t1	MTR_4g091680	75.930	860	149	8	1	858	1	804	1281
MS.gene052588.t1	MTR_4g091730	74.132	835	137	9	38	858	16	785	1219
MS.gene052588.t1	MTR_4g091860	51.923	832	376	16	41	858	15	836	826
MS.gene052588.t1	MTR_4g091800	76.271	472	104	3	1	472	1	464	749

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene052588.t1	AT1G11340	49.819	829	388	14	45	858	18	833	793
MS.gene052588.t1	AT1G11410	48.333	840	398	15	43	858	18	845	767
MS.gene052588.t1	AT1G11410	48.333	840	398	15	43	858	25	852	767
MS.gene052588.t1	AT1G11410	48.372	829	393	14	53	858	5	821	765
MS.gene052588.t1	AT1G11340	50.962	728	333	11	45	761	86	800	726
MS.gene052588.t1	AT1G11410	48.431	733	347	11	148	858	7	730	683
MS.gene052588.t1	AT4G21380	43.890	802	395	15	55	827	40	815	672
MS.gene052588.t1	AT4G27290	44.334	803	435	9	28	828	6	798	667
MS.gene052588.t1	AT1G65800	44.933	819	384	19	41	827	30	813	667
MS.gene052588.t1	AT1G65790	44.068	826	408	18	61	858	44	843	667

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Find 166 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACTTCTAACATCGA+TGG	0.598258	4.3:+22406288	None:intergenic
AAAACACATAGGAGAAGAGG+AGG	0.677637	4.3:+22408943	None:intergenic
AAAAGAAGCGTAGGAGTCCT+AGG	0.471236	4.3:-22409014	MS.gene052588:CDS
AAAGCTGGTTCCTTCAATCC+TGG	0.471636	4.3:-22409907	MS.gene052588:CDS
AAATCCAAAACTTTCGCTCT+TGG	0.306971	4.3:-22410298	MS.gene052588:CDS
AAATCCACATCTCGCTATGT+TGG	0.549089	4.3:-22410259	MS.gene052588:CDS
AAATCTGATGTCTTCAGTTA+TGG	0.430585	4.3:-22406614	MS.gene052588:CDS
AACCAAAATTTCCACGTGAT+TGG	0.360045	4.3:-22409457	MS.gene052588:CDS
AAGCTTGGACAAGGTGGATT+TGG	0.300109	4.3:-22408005	MS.gene052588:CDS
AATAACCACAAAAGAAGCGT+AGG	0.625150	4.3:-22409023	MS.gene052588:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAACTTCTAACATCGA+TGG	+	chr4.3:22410345-22410364	None:intergenic	30.0%
AAATCTGATGTCTTCAGTTA+TGG	-	chr4.3:22410016-22410035	MS.gene052588:CDS	30.0%
AAGTATCATGCATAAATAGG+AGG	+	chr4.3:22408257-22408276	None:intergenic	30.0%
AATCTTTAGATATGGAAGCA+AGG	+	chr4.3:22406681-22406700	None:intergenic	30.0%
ACAAACCAATGTGATAACTA+TGG	-	chr4.3:22407076-22407095	MS.gene052588:intron	30.0%
ACAACACCAAAACTGTATTA+TGG	-	chr4.3:22406630-22406649	MS.gene052588:CDS	30.0%
ACCTAATATGAAACGAGATA+TGG	-	chr4.3:22406883-22406902	MS.gene052588:CDS	30.0%
AGAGAATCCCCAAATTTAAT+TGG	-	chr4.3:22410094-22410113	MS.gene052588:CDS	30.0%
ATCGAACATGTTATATGAGA+TGG	+	chr4.3:22406954-22406973	None:intergenic	30.0%
ATCTCCTTATCAAAACTCTT+TGG	-	chr4.3:22409105-22409124	MS.gene052588:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	22406143	22410509	22406143	ID=MS.gene052588
chr4.3	mRNA	22406143	22410509	22406143	ID=MS.gene052588.t1;Parent=MS.gene052588
chr4.3	exon	22409144	22410509	22409144	ID=MS.gene052588.t1.exon1;Parent=MS.gene052588.t1
chr4.3	CDS	22409144	22410509	22409144	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1
chr4.3	exon	22408916	22409053	22408916	ID=MS.gene052588.t1.exon2;Parent=MS.gene052588.t1
chr4.3	CDS	22408916	22409053	22408916	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1
chr4.3	exon	22407992	22408161	22407992	ID=MS.gene052588.t1.exon3;Parent=MS.gene052588.t1
chr4.3	CDS	22407992	22408161	22407992	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1
chr4.3	exon	22407676	22407886	22407676	ID=MS.gene052588.t1.exon4;Parent=MS.gene052588.t1
chr4.3	CDS	22407676	22407886	22407676	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1
chr4.3	exon	22406771	22407008	22406771	ID=MS.gene052588.t1.exon5;Parent=MS.gene052588.t1
chr4.3	CDS	22406771	22407008	22406771	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1
chr4.3	exon	22406532	22406682	22406532	ID=MS.gene052588.t1.exon6;Parent=MS.gene052588.t1
chr4.3	CDS	22406532	22406682	22406532	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1
chr4.3	exon	22406143	22406445	22406143	ID=MS.gene052588.t1.exon7;Parent=MS.gene052588.t1
chr4.3	CDS	22406143	22406445	22406143	ID=cds.MS.gene052588.t1;Parent=MS.gene052588.t1

Gene Sequence

>MS.gene052588

ATGGACTCTGCTAAAAATCATCTCTACTTTGTCACAGCCAAAAATCATAAACACAACTTAATATTACATAATAGTTGGTTCCTTATAAACTCTTTGATTCTACTCCTTCTCACCTTCTCCTTTTGCTCTTGTTCTTCTGATGTCATATCTATTGACAAACCAATAAGAGATGGTGATCTTCTTGTTTCCAAATCCAAAACTTTCGCTCTTGGATTCTTCACTCCAGCAAAATCCACATCTCGCTATGTTGGTATTTGGTACAACAATTTGCCAATCCAAACTGTTGTTTGGGTTGCAAATAGAAATAGTCCAATCAACGATACTTCTGGAATTCTATCAATCAATCCAAATGGAAATCTAGTACTCAACCACAACCGTAGCACCATTCCCATTTGGTCTACCGATGTTTCATTACCACAATCACAAAGAAATAGCACCAGGGTTATAGCTCAACTATCGGATGTAGCAAACCTTGTTCTGATGATAAACAACACCAAAACTGTATTATGGGAAAGCTTTGATCATCCAACAGACACCTTGCTTCCATATCTAAAGATTGGGTTTAATAGAAAAACTAATCAAAGCTGGTTCCTTCAATCCTGGAAGACAGATGATGACCCTGGAAATGGTGCATTCACAGTGAAATTCAACAGCATTGTCAAACCTCAGTTGTTTATGTACAACCATGATTTTCCATGGTGGCGTGGTGGACATTGGAACGGAGCAATATTAGTAGGTGCACCTAATATGAAACGAGATATGGCAATTTTGAATGTTTCTTTTGTGGAAGATGATGATAACTATGTAGCCATCTCATATAACATGTTCGATAAGTCTGTCATAGCAAGGATAGTTGTTCAGCAATCTGGTTTCTTTCAAATATTCACTTGGAACAATCAAAAGAGTCAATGGAACAGGTTCTGGTCTGAACCAACAAACCAATGTGATAACTATGGAACCTGTGGATCAAACAGTAATTGTGACCCTTTGAACTTTGAGGACTTTAAGTGTACTTGTTTACCAGGTTTTGAACCAAAATTTCCACGTGATTGGTATGAGAGAAGAGATGGGTCAGGAGGGTGTGTAAGGAAGAAAGGCACATCTATTTGTCGGAATGGAGAAGGGTTTGTCAAAGTTGCAAGCTTGAAAGTTCCTGATATATCTGTGGCAGTTGCTAAAGGTGGTTTGAGTTTGGAAGAATGTGAGAAAGAATGCTTGAGAAACTGCTCTTGTGCTTCCTATGCGGTTGCTGATGTGAGTAATGGTGGAAGTGGCTGTTTAGAATGGTATGGGGATTTAATGGACATTCAAAAACTTAATGATCAAGGCCAAGATTTATTTGTACGTGTCGATGCAGTTGAACTAGGTAAGGTATTTCCCCACTTTTTTTTTTCTTTCTAAATTTGACATCACTTTGGTGCAATTGAAATTCCTTGGACTTTTTTCTTCTTATCAGCCAAAGCCAATAACCACAAAAGAAGCGTAGGAGTCCTAGGTGAAAAGAGGTTTTCTGCAATTCTGGTTGCTTCTACAGTTGCAATTGTCCTCCTCTTCTCCTATGTGTTTTGCAGGTGGAAGAAAAAAACAAGAAAGGGTATGTGATTTAATTTTAAGGATAATATCCTCTGTTCTTTATATTTCATTATTATTTGCAACGTCTCTTACAAAAGGTGTCCTATTAGTTTTTCGTTTTCAGCTGTTACAGTAAGCCGATTCTGTCAGTATTAGTTGGTCACTTGGGAGTTATTTACTCAATTAGTTTCTGCTATTGAACACAATTCACTATCATTTTCAATCAAATTCAGTATGTTATCACATGACTATTCTTATGCTTCTACTCTGATGTGTATGATCTCTGGTGCTCTTCATCCCTTGATTCTTAATTTAAGACCTTCTTTTTGTGTGCTATATGGTTTACCAAAGTTATGAAAGCAGTCTAAGTTTCCTTAGAAGTTCCAAATAATGTTTTAGGAACCCATAATATGTATTGAAAACGATGAACGTTTTATTAAGATAGAAAGAATAGGAAAGAAAAATTCTTCTCCAAGAGTATTCCATTTAAAACAAAGCCACTGCTTTATTCACCAAAAATTACAATAATCAATAATAATCCTCCTATTTATGCATGATACTTTCTAACCAATCAACTAACTTTTCTAACTAAATCCCCTTTACTCTATATCCTAACATAACGTCTAAGTTTTGATTGAATATTATTAATATTGATATCATTACACTAGTAACACTAGCTAAATGGATAATCAATTTTTTCTAGAGCTGGAAAGAAATATACCTATCAAAATTTGCAAGTTGATTGAAATCTTAAATCATGCCATTTGTAACTTCAGATAAAATGATGCGGCAATTTAACCAAGATTCCTCTGGCGAAGAGAATGGTGAGCAAAGCAACACACATCCAAATCTGCCCTTTTTCAGCTTTAAAACGATTATAACAGCTACAAGTGATTTTAGTCATCAGAATAAGCTTGGACAAGGTGGATTTGGCTCTGTCTATAAGGTAAGTTAGACTCTACATTGAACTACTGATGCAAGAAGTGAAAACATCATTATCTAAAAAAGATGCAAAAATTGTGAAATTGGATTTAAGAGATAAAAATTGCAGGGTTGCTTGGTTAATGGACAAGAAATAGCAGTGAAAAGATTGTCCAGATTTTCAGGTCAAGGAAAAGAAGAGTTTAAAAATGAAGTTAAACTTTTAGTCAAACTTCAACACAGAAATCTAGTGAGGTTGCTAGGTTGTTGCTTTGAAAAGGAAGAAAGGATGCTAGTTTATGAATACTTACCAAACAAAAGCCTAGATTTCTTTATATTTGGTATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACTATTTCTCTATCCTGAGTAAACATGGAACAAAGAAGCTTTTCTCATCATTCAGTTACAAATTTTGAATAATCCATTTTCATAGATCTCCTTATCAAAACTCTTTGGAGTCAGCTTCTACCTTTCATCATCACAAATGCCTTTAACTAAAGAACATACGCAAAATCTAGCCTATTGAGATACATCAGTTCAATTTTTTAAAGAATGTAATTTGTGGCACATTTCCAGGTTAAACCTATTTCTATCCTCTTCAAAATATCTATTAGGAATTTAGGCCTTCAACAATTAGCATCATCAAATTGAAAGCTTTTCACTAAGTTGACCATTGGCCTATTTATATCTTTCTATACATCTTTTAAAATAAAGACCAGAAATTTACAGATGTTTATATACCTTTTGTCAGGCACAAAATGATTGATCCAACAGATTATCCAATTTCCTGTATTCCTTGTCAGTTTCCTAAATTCTATATTTTGATAGTTTCATGGTTAAGTGGAAATAATGGCTTCCTGATATATACAAAATGCAAATAAAATAAAATTTTATTTTTATTTTCAATTGCACAATAGAAAATAATGTTTCCTAATATGTTCAATTTCGGGAAACTTCAACTGTTACCCTCAGATCAAAACCAAAGGTCATCATTGGATTGGGGCAAGCGTTTTGAAATTATTTGTGGGATTGCTCGAGGTGTTTTATATCTTCATCAAGATTCAAGGCCGAAAATAATTCATAGAGATCTAAAACCCAGCAATGTTCTCCTTGACGCTGCAATGAATCCCAAAATCTCAGATTTTGGTATGGCTAGAATATTTGGAGAAGATGAAATCCAAGCAAGAACAAAAAGAGTGGTTGGAACATAGTAGGTGTCATACCCTCATTGTATTCACCAAAATTATAAAGAAGGATCGGTAGTTTTAAAAATTCTCTAACATTTTTTATAATTGCAGTGGATACATGTCACCAGAATATGCAATGGAAGGACGATATTCAACAAAATCTGATGTCTTCAGTTATGGTGTCATACTACTGGAGATTATTGCTGGCCAAAGAAACACACATTGTGTAACAGGAAGAGAATCCCCAAATTTAATTGGACATGTAAGTTATATAGAAAGAGGTAGCCTTAAAATTGGCCAACGATTTAACAGTGCATGATTGACTTATAAGGATTTTGAGTTTTGTAGGTGTGGACACTATGGACAGAAGGAAGAGCCTTGGATATAGTTGATCCAGAACTAAACCAGTTTTATCCTCCGACTACAGTTATGAGATGCATTCAAATTGGACTTCTATGTGTGCAAGAGAATGCCACAAATAGACCATCGATGTTAGAAGTTGTTTTCATGCTAGCTAATGAAACACCTCTTTGCCCACCTCAAAAACCAGCATTTTTATTCAATGGCAACCAAGATTTGCAAGAATCATCAACATCAGGAGGAGGATCTTCAATAAATGAATTAACAGAAACTACCATCAGTGCTCGCTAA

Protein sequence

>MS.gene052588.t1

MDSAKNHLYFVTAKNHKHNLILHNSWFLINSLILLLLTFSFCSCSSDVISIDKPIRDGDLLVSKSKTFALGFFTPAKSTSRYVGIWYNNLPIQTVVWVANRNSPINDTSGILSINPNGNLVLNHNRSTIPIWSTDVSLPQSQRNSTRVIAQLSDVANLVLMINNTKTVLWESFDHPTDTLLPYLKIGFNRKTNQSWFLQSWKTDDDPGNGAFTVKFNSIVKPQLFMYNHDFPWWRGGHWNGAILVGAPNMKRDMAILNVSFVEDDDNYVAISYNMFDKSVIARIVVQQSGFFQIFTWNNQKSQWNRFWSEPTNQCDNYGTCGSNSNCDPLNFEDFKCTCLPGFEPKFPRDWYERRDGSGGCVRKKGTSICRNGEGFVKVASLKVPDISVAVAKGGLSLEECEKECLRNCSCASYAVADVSNGGSGCLEWYGDLMDIQKLNDQGQDLFVRVDAVELAKANNHKRSVGVLGEKRFSAILVASTVAIVLLFSYVFCRWKKKTRKDKMMRQFNQDSSGEENGEQSNTHPNLPFFSFKTIITATSDFSHQNKLGQGGFGSVYKGCLVNGQEIAVKRLSRFSGQGKEEFKNEVKLLVKLQHRNLVRLLGCCFEKEERMLVYEYLPNKSLDFFIFDQNQRSSLDWGKRFEIICGIARGVLYLHQDSRPKIIHRDLKPSNVLLDAAMNPKISDFGMARIFGEDEIQARTKRVVGTYGYMSPEYAMEGRYSTKSDVFSYGVILLEIIAGQRNTHCVTGRESPNLIGHVWTLWTEGRALDIVDPELNQFYPPTTVMRCIQIGLLCVQENATNRPSMLEVVFMLANETPLCPPQKPAFLFNGNQDLQESSTSGGGSSINELTETTISAR