AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene002905

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002905.t1 MTR_2g022700 94.192 396 11 1 1 384 1 396 0.0 750
MS.gene002905.t1 MTR_4g131800 75.598 418 64 3 1 383 1 415 0.0 578
MS.gene002905.t1 MTR_3g049400 75.733 375 75 6 19 382 31 400 0.0 552
MS.gene002905.t1 MTR_2g029180 49.555 337 157 7 47 380 66 392 3.38e-96 293
MS.gene002905.t1 MTR_4g088350 38.817 389 212 8 6 379 8 385 4.86e-79 249
MS.gene002905.t1 MTR_5g044220 40.351 342 179 7 57 384 65 395 4.35e-76 242
MS.gene002905.t1 MTR_6g005480 44.012 334 166 6 60 387 92 410 1.25e-75 241
MS.gene002905.t1 MTR_4g105630 41.391 302 172 3 88 387 81 379 7.88e-71 227
MS.gene002905.t1 MTR_4g105630 40.893 291 169 2 88 376 81 370 9.14e-67 216
MS.gene002905.t1 MTR_3g077640 39.429 350 193 5 40 387 72 404 3.65e-66 216
MS.gene002905.t1 MTR_4g088350 41.509 265 146 4 119 379 15 274 4.77e-63 204
MS.gene002905.t1 MTR_4g105630 37.759 241 147 2 88 326 81 320 4.53e-45 159
MS.gene002905.t1 MTR_4g105630 39.535 215 128 1 88 300 81 295 7.96e-43 153
MS.gene002905.t1 MTR_1g030320 27.303 304 182 7 99 382 21 305 2.34e-24 103
MS.gene002905.t1 MTR_3g072380 26.645 304 184 7 99 382 22 306 1.99e-23 100
MS.gene002905.t1 MTR_3g072380 30.357 168 107 3 99 259 22 186 9.36e-17 79.3
MS.gene002905.t1 MTR_3g070000 23.226 310 219 11 84 382 17 318 4.68e-16 79.0
MS.gene002905.t1 MTR_4g018760 22.945 292 214 6 98 382 19 306 1.33e-14 74.3
MS.gene002905.t1 MTR_5g081710 23.129 294 213 8 97 382 14 302 1.86e-14 73.9
MS.gene002905.t1 MTR_3g462070 21.306 291 218 6 99 382 17 303 2.59e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene002905.t1 AT1G61800 77.749 382 75 3 3 382 14 387 0.0 591
MS.gene002905.t1 AT1G61800 78.158 380 73 3 3 380 14 385 0.0 589
MS.gene002905.t1 AT5G54800 75.526 380 75 5 10 383 21 388 0.0 549
MS.gene002905.t1 AT5G17630 46.154 364 190 5 30 390 51 411 2.13e-110 330
MS.gene002905.t1 AT4G03950 57.525 299 65 7 92 387 18 257 6.18e-95 286
MS.gene002905.t1 AT5G46110 43.197 294 158 4 90 379 106 394 1.13e-77 246
MS.gene002905.t1 AT5G46110 43.197 294 158 4 90 379 106 394 1.53e-77 246
MS.gene002905.t1 AT5G46110 43.509 285 152 4 99 379 2 281 6.60e-77 240
MS.gene002905.t1 AT5G46110 41.837 294 151 5 90 379 106 383 3.16e-72 231
MS.gene002905.t1 AT3G01550 39.871 311 184 2 80 387 67 377 9.44e-68 219
MS.gene002905.t1 AT3G01550 38.907 311 182 3 80 387 67 372 1.14e-63 209
MS.gene002905.t1 AT5G33320 40.678 295 172 2 90 382 106 399 6.47e-62 205
MS.gene002905.t1 AT1G77610 26.263 297 194 6 99 382 16 300 8.31e-24 101
MS.gene002905.t1 AT1G21870 25.926 297 195 6 99 382 22 306 6.84e-23 99.0
MS.gene002905.t1 AT5G05820 23.746 299 214 9 92 382 12 304 5.42e-17 81.6
MS.gene002905.t1 AT3G11320 23.077 299 216 9 92 382 12 304 4.44e-15 75.9
MS.gene002905.t1 AT1G12500 24.150 294 210 8 97 382 64 352 4.18e-13 70.5

Find 73 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTCACATTCTTTCTTT+TGG 0.109741 2.1:+65614088 None:intergenic
CTAAAGTTAACTTGGATTTC+TGG 0.136067 2.1:-65613815 MS.gene002905:CDS
AATTCTTGTTTCAGGATTTA+TGG 0.170342 2.1:-65613099 MS.gene002905:intron
CTCTCATTGTTGCCAATAAT+TGG 0.171795 2.1:-65613237 MS.gene002905:CDS
CAAATTTGGCATTTGTATTC+AGG 0.181063 2.1:-65613064 MS.gene002905:CDS
CAGAAATCCAAGTTAACTTT+AGG 0.181603 2.1:+65613816 None:intergenic
GGGAGCTATGATATCAAATT+TGG 0.191205 2.1:-65613078 MS.gene002905:CDS
GGAGCAGCTATTGCAATTCT+TGG 0.270973 2.1:-65612553 MS.gene002905:CDS
CTGTGGAGGGTCCTAAAGTT+TGG 0.288667 2.1:-65612935 MS.gene002905:CDS
ATGACACTTGATTATATAAA+TGG 0.296751 2.1:+65612698 None:intergenic
TGAAAGATAGAGAGGTTTCT+TGG 0.315407 2.1:+65614142 None:intergenic
CAACCAGCAGCCCAAACTTT+AGG 0.316051 2.1:+65612924 None:intergenic
GGTCCTAAAGTTTGGGCTGC+TGG 0.319733 2.1:-65612927 MS.gene002905:CDS
AGTGCGCAACCACCAATTAT+TGG 0.320937 2.1:+65613225 None:intergenic
TGTTAATCTCATGGGCTACT+AGG 0.323213 2.1:-65613851 MS.gene002905:CDS
TGTGCTTACCAAACAAAATT+CGG 0.340997 2.1:+65612876 None:intergenic
GAGCAGGCTAAACAGAATTA+AGG 0.359432 2.1:-65612098 MS.gene002905:CDS
ATTCTTGTTTCAGGATTTAT+GGG 0.368019 2.1:-65613098 MS.gene002905:intron
CTCTCATTATGTTAATCTCA+TGG 0.373482 2.1:-65613860 MS.gene002905:CDS
AGAAATCCAAGTTAACTTTA+GGG 0.384705 2.1:+65613817 None:intergenic
GAACTCAATTTCAATATGAT+TGG 0.386036 2.1:-65613189 MS.gene002905:intron
CAAACAGCTGTGTCTCAAAT+TGG 0.392629 2.1:-65612900 MS.gene002905:CDS
AGCTGCTCCAAGAGCATTGA+TGG 0.393145 2.1:+65612567 None:intergenic
GGCAACAATGAGAGGTAAAC+TGG 0.394912 2.1:+65613246 None:intergenic
TGTGGAGGGTCCTAAAGTTT+GGG 0.400218 2.1:-65612934 MS.gene002905:CDS
AGTGAATGAAACTGCTACTT+TGG 0.405993 2.1:+65613344 None:intergenic
GCAGCTCAAAAGCTCAAGAT+TGG 0.427817 2.1:-65613999 MS.gene002905:CDS
TCCACTTTATCCTTAGCTGC+TGG 0.430126 2.1:-65613885 MS.gene002905:CDS
TTCTCAAAGAAAGGAATGAA+TGG 0.434361 2.1:-65613035 MS.gene002905:CDS
AGAATTGAAAATTGAGACCT+TGG 0.444612 2.1:+65614215 None:intergenic
CTTCAACCCATCAATGCTCT+TGG 0.453683 2.1:-65612574 MS.gene002905:CDS
GTAGCTGTGGCACACACAAT+TGG 0.470268 2.1:-65613393 MS.gene002905:CDS
ACCAGCAGCTAAGGATAAAG+TGG 0.472955 2.1:+65613884 None:intergenic
GTTAATCTCATGGGCTACTA+GGG 0.473011 2.1:-65613850 MS.gene002905:CDS
TGAGGCCCCTAAAGTTAACT+TGG 0.473088 2.1:-65613823 MS.gene002905:CDS
CATCATCAAGAGTGGAGAAC+CGG 0.480485 2.1:-65613319 MS.gene002905:CDS
TAGCTGTGGCACACACAATT+GGG 0.496344 2.1:-65613392 MS.gene002905:CDS
AGGAATATATTCTCAAAGAA+AGG 0.498153 2.1:-65613044 MS.gene002905:CDS
ATGAATGGGATGAGTGTTAG+TGG 0.502849 2.1:-65613020 MS.gene002905:CDS
TGGCACCTTCATATATTCAC+AGG 0.507307 2.1:-65612533 MS.gene002905:intron
CTAAAGTTTGGGCTGCTGGT+TGG 0.511387 2.1:-65612923 MS.gene002905:CDS
TCTCAAAGAAAGGAATGAAT+GGG 0.514111 2.1:-65613034 MS.gene002905:CDS
TGAGTGGATGAAAGATAGAG+AGG 0.518129 2.1:+65614134 None:intergenic
CCCTCCACAGCAATAGCAAA+AGG 0.519923 2.1:+65612948 None:intergenic
CAGCTCAAAAGCTCAAGATT+GGG 0.521252 2.1:-65613998 MS.gene002905:CDS
TCTCATTATGTTAATCTCAT+GGG 0.522285 2.1:-65613859 MS.gene002905:CDS
ATTTCCTATGCTAAATGTCA+AGG 0.536101 2.1:+65612651 None:intergenic
AATGAGAGAACCAGCAGCTA+AGG 0.537711 2.1:+65613875 None:intergenic
TCAAAATGTTGAACAAAACA+TGG 0.542137 2.1:-65614183 MS.gene002905:CDS
TCATTGTTGCCAATAATTGG+TGG 0.544739 2.1:-65613234 MS.gene002905:CDS
AACATTGAACTTCCTAGTGA+AGG 0.545080 2.1:-65614023 MS.gene002905:CDS
CTAGTATCAAGATTCATGCT+TGG 0.552737 2.1:-65613285 MS.gene002905:CDS
GACAGAATGTCAAGCTTATG+AGG 0.561271 2.1:-65614072 MS.gene002905:CDS
GAAATCCAAGTTAACTTTAG+GGG 0.565634 2.1:+65613818 None:intergenic
CTTATGAGGCTGATAGATCA+AGG 0.566563 2.1:-65614058 MS.gene002905:CDS
ATTCACCTGTGAATATATGA+AGG 0.568475 2.1:+65612528 None:intergenic
GCTAAACAGAATTAAGGTTG+CGG 0.569787 2.1:-65612092 MS.gene002905:CDS
GTGGAAGTGAGCCAAGGGTA+AGG 0.571201 2.1:+65613903 None:intergenic
ATGGGCTACTAGGGTTGCTG+AGG 0.583408 2.1:-65613841 MS.gene002905:CDS
ATTGGGTATGCAGGTAGCTG+TGG 0.585242 2.1:-65613406 MS.gene002905:intron
TCTCCCTTGACATTTAGCAT+AGG 0.585989 2.1:-65612655 MS.gene002905:CDS
GATACTAGCACACTGAAAGC+CGG 0.587523 2.1:+65613300 None:intergenic
TTCACTCACATCATCAAGAG+TGG 0.593759 2.1:-65613327 MS.gene002905:CDS
CAAGTACATCATCACTTCCA+AGG 0.595632 2.1:-65614232 MS.gene002905:CDS
TGGTGTGTGAAAGATAATGA+TGG 0.599746 2.1:+65612597 None:intergenic
AGTTCAATGTTAATCTCTAG+TGG 0.602873 2.1:+65614035 None:intergenic
CAATTATTGGCAACAATGAG+AGG 0.616851 2.1:+65613238 None:intergenic
TTTCCTATGCTAAATGTCAA+GGG 0.621205 2.1:+65612652 None:intergenic
GATAAAGTGGAAGTGAGCCA+AGG 0.631302 2.1:+65613897 None:intergenic
CAAAATGTTGAACAAAACAT+GGG 0.645558 2.1:-65614182 MS.gene002905:CDS
GCTGCTCCAAGAGCATTGAT+GGG 0.645674 2.1:+65612568 None:intergenic
ATAAAGTGGAAGTGAGCCAA+GGG 0.650767 2.1:+65613898 None:intergenic
AGAGCATTGATGGGTTGAAG+TGG 0.671770 2.1:+65612577 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCTTTAATTAATAATAATTT+GGG - chr2.1:65613541-65613560 MS.gene002905:intron 10.0%
!! TTTATTACTTAAATTATTAC+AGG - chr2.1:65612776-65612795 MS.gene002905:intron 10.0%
!!! ATTTTTTTTTTTATGTTAAC+AGG - chr2.1:65613564-65613583 MS.gene002905:intron 10.0%
!! AATTAGAATGAAAAGAAAAT+GGG + chr2.1:65612551-65612570 None:intergenic 15.0%
!! CGCTTTAATTAATAATAATT+TGG - chr2.1:65613540-65613559 MS.gene002905:intron 15.0%
!! ACCTAAGAAATTTCAAAATT+GGG - chr2.1:65612888-65612907 MS.gene002905:CDS 20.0%
!! ACTTGATCTTTATAGTTTAT+AGG - chr2.1:65613829-65613848 MS.gene002905:CDS 20.0%
!! ATGACACTTGATTATATAAA+TGG + chr2.1:65613616-65613635 None:intergenic 20.0%
!! ATTAGAATGAAAAGAAAATG+GGG + chr2.1:65612550-65612569 None:intergenic 20.0%
!! CAATTAGAATGAAAAGAAAA+TGG + chr2.1:65612552-65612571 None:intergenic 20.0%
!! TATACTAGTTCAAATTTCTT+CGG - chr2.1:65613514-65613533 MS.gene002905:intron 20.0%
!!! TTTTTTTTATGTTAACAGGT+GGG - chr2.1:65613568-65613587 MS.gene002905:intron 20.0%
!!! TTTTTTTTTATGTTAACAGG+TGG - chr2.1:65613567-65613586 MS.gene002905:intron 20.0%
! AAGTTTCAAAGGTTACAAAT+AGG + chr2.1:65614017-65614036 None:intergenic 25.0%
! AGAAATCCAAGTTAACTTTA+GGG + chr2.1:65612497-65612516 None:intergenic 25.0%
! AGGAATATATTCTCAAAGAA+AGG - chr2.1:65613267-65613286 MS.gene002905:CDS 25.0%
! CAAAATGTTGAACAAAACAT+GGG - chr2.1:65612129-65612148 MS.gene002905:intron 25.0%
! CACCTAAGAAATTTCAAAAT+TGG - chr2.1:65612887-65612906 MS.gene002905:CDS 25.0%
! GAACTCAATTTCAATATGAT+TGG - chr2.1:65613122-65613141 MS.gene002905:intron 25.0%
! GTTACAAATGTGAAACTTAA+AGG + chr2.1:65613873-65613892 None:intergenic 25.0%
! TCAAAATGTTGAACAAAACA+TGG - chr2.1:65612128-65612147 MS.gene002905:intron 25.0%
! TCTCATTATGTTAATCTCAT+GGG - chr2.1:65612452-65612471 MS.gene002905:intron 25.0%
!! AATTCTTGTTTCAGGATTTA+TGG - chr2.1:65613212-65613231 MS.gene002905:CDS 25.0%
!! ATTCTTGTTTCAGGATTTAT+GGG - chr2.1:65613213-65613232 MS.gene002905:CDS 25.0%
!! GATTTTTCTTACAGGAAAAA+GGG + chr2.1:65612526-65612545 None:intergenic 25.0%
!! TACAATATCAATGCTCTAAA+TGG - chr2.1:65613186-65613205 MS.gene002905:intron 25.0%
!! TGATTTTTCTTACAGGAAAA+AGG + chr2.1:65612527-65612546 None:intergenic 25.0%
!!! ACCCAATTTTGAAATTTCTT+AGG + chr2.1:65612892-65612911 None:intergenic 25.0%
!!! GTTTTGTTCAACATTTTGAA+TGG + chr2.1:65612127-65612146 None:intergenic 25.0%
!!! TTGTAACCTTTGAAACTTAA+AGG - chr2.1:65614019-65614038 MS.gene002905:CDS 25.0%
AATTTCAAAATTGGGTATGC+AGG - chr2.1:65612896-65612915 MS.gene002905:CDS 30.0%
ACATTCCCAAAGTATAAACT+AGG + chr2.1:65614094-65614113 None:intergenic 30.0%
AGAATTGAAAATTGAGACCT+TGG + chr2.1:65612099-65612118 None:intergenic 30.0%
AGTTCAATGTTAATCTCTAG+TGG + chr2.1:65612279-65612298 None:intergenic 30.0%
ATTCACCTGTGAATATATGA+AGG + chr2.1:65613786-65613805 None:intergenic 30.0%
ATTTCCTATGCTAAATGTCA+AGG + chr2.1:65613663-65613682 None:intergenic 30.0%
ATTTGGCCTAGTTTATACTT+TGG - chr2.1:65614085-65614104 MS.gene002905:CDS 30.0%
CAAATTTGGCATTTGTATTC+AGG - chr2.1:65613247-65613266 MS.gene002905:CDS 30.0%
CAGAAATCCAAGTTAACTTT+AGG + chr2.1:65612498-65612517 None:intergenic 30.0%
CTCTCATTATGTTAATCTCA+TGG - chr2.1:65612451-65612470 MS.gene002905:intron 30.0%
CTGAAACCTTAGAAACTTAA+AGG - chr2.1:65613990-65614009 MS.gene002905:CDS 30.0%
CTGAAACCTTAGAAACTTAA+AGG + chr2.1:65614009-65613990 None:intergenic 30.0%
GAAATCCAAGTTAACTTTAG+GGG + chr2.1:65612496-65612515 None:intergenic 30.0%
GATCAAGTACATACTTTAGT+AGG + chr2.1:65613817-65613836 None:intergenic 30.0%
GTTACAAACGTGAAACTTAA+AGG - chr2.1:65614050-65614069 MS.gene002905:CDS 30.0%
GTTTCACATTTGTAACAGAT+AGG - chr2.1:65613877-65613896 MS.gene002905:CDS 30.0%
GTTTCACGTTTGTAACATAT+TGG + chr2.1:65614046-65614065 None:intergenic 30.0%
TCTCAAAGAAAGGAATGAAT+GGG - chr2.1:65613277-65613296 MS.gene002905:CDS 30.0%
TGTGCTTACCAAACAAAATT+CGG + chr2.1:65613438-65613457 None:intergenic 30.0%
TTCTCAAAGAAAGGAATGAA+TGG - chr2.1:65613276-65613295 MS.gene002905:CDS 30.0%
TTGAATGTAACTACATGCAT+CGG + chr2.1:65612622-65612641 None:intergenic 30.0%
TTTCCTATGCTAAATGTCAA+GGG + chr2.1:65613662-65613681 None:intergenic 30.0%
TTTGGCCTAGTTTATACTTT+GGG - chr2.1:65614086-65614105 MS.gene002905:CDS 30.0%
! AAATTGGTCCGAATTTTGTT+TGG - chr2.1:65613427-65613446 MS.gene002905:intron 30.0%
! AATGGATCAATTCTTGTTTC+AGG - chr2.1:65613204-65613223 MS.gene002905:CDS 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - chr2.1:65613895-65613914 MS.gene002905:CDS 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG + chr2.1:65613914-65613895 None:intergenic 30.0%
! ATTGGTCCTTTAAGTTTCAA+AGG + chr2.1:65614028-65614047 None:intergenic 30.0%
! CTAAAGTTAACTTGGATTTC+TGG - chr2.1:65612496-65612515 MS.gene002905:intron 30.0%
! TAGCAATGCAAAATTTTGAG+TGG + chr2.1:65612196-65612215 None:intergenic 30.0%
! TCTGTCACATTCTTTCTTTT+GGG + chr2.1:65612225-65612244 None:intergenic 30.0%
! TGTTCAACATTTTGAATGGT+TGG + chr2.1:65612123-65612142 None:intergenic 30.0%
! TTCTGTCACATTCTTTCTTT+TGG + chr2.1:65612226-65612245 None:intergenic 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG - chr2.1:65613906-65613925 MS.gene002905:CDS 30.0%
!! AAGTTTCTAAGGTTTCAGAT+AGG + chr2.1:65613925-65613906 None:intergenic 30.0%
!!! TGTTGATTTTTTGAAAGAGC+AGG - chr2.1:65614197-65614216 MS.gene002905:CDS 30.0%
AACATTGAACTTCCTAGTGA+AGG - chr2.1:65612288-65612307 MS.gene002905:intron 35.0%
CAATTATTGGCAACAATGAG+AGG + chr2.1:65613076-65613095 None:intergenic 35.0%
CTAGTATCAAGATTCATGCT+TGG - chr2.1:65613026-65613045 MS.gene002905:CDS 35.0%
CTCTCATTGTTGCCAATAAT+TGG - chr2.1:65613074-65613093 MS.gene002905:CDS 35.0%
GAGATTGAAACATTACGTGA+GGG - chr2.1:65614151-65614170 MS.gene002905:CDS 35.0%
GCTAAACAGAATTAAGGTTG+CGG - chr2.1:65614219-65614238 MS.gene002905:CDS 35.0%
GGGAGCTATGATATCAAATT+TGG - chr2.1:65613233-65613252 MS.gene002905:CDS 35.0%
GTAACTACATTTCTCAGTGT+CGG + chr2.1:65612746-65612765 None:intergenic 35.0%
GTGAGCACTAAAAATAACAC+CGG + chr2.1:65612870-65612889 None:intergenic 35.0%
TCATTGTTGCCAATAATTGG+TGG - chr2.1:65613077-65613096 MS.gene002905:CDS 35.0%
TGAAAGATAGAGAGGTTTCT+TGG + chr2.1:65612172-65612191 None:intergenic 35.0%
TGAGATTGAAACATTACGTG+AGG - chr2.1:65614150-65614169 MS.gene002905:CDS 35.0%
TGGTGTGTGAAAGATAATGA+TGG + chr2.1:65613717-65613736 None:intergenic 35.0%
! AATGGGGTGATTTTTCTTAC+AGG + chr2.1:65612534-65612553 None:intergenic 35.0%
! AGTGAATGAAACTGCTACTT+TGG + chr2.1:65612970-65612989 None:intergenic 35.0%
! TAGGTCTTTAAGTTTCGAGT+TGG + chr2.1:65613969-65613988 None:intergenic 35.0%
! TGAAGCTTTTATCGAAAGCA+TGG - chr2.1:65614245-65614264 MS.gene002905:CDS 35.0%
! TTTTTATGTTAACAGGTGGG+TGG - chr2.1:65613571-65613590 MS.gene002905:intron 35.0%
!! GAAGCTTTTATCGAAAGCAT+GGG - chr2.1:65614246-65614265 MS.gene002905:CDS 35.0%
!! GTTGTATTTTGCTACTTGGT+GGG - chr2.1:65612335-65612354 MS.gene002905:intron 35.0%
!! TTGGGTTGTATTTTGCTACT+TGG - chr2.1:65612331-65612350 MS.gene002905:intron 35.0%
!!! ACTTTTTCAACCTGAAGTGT+CGG + chr2.1:65612714-65612733 None:intergenic 35.0%
ATAAAGTGGAAGTGAGCCAA+GGG + chr2.1:65612416-65612435 None:intergenic 40.0%
ATGAATGGGATGAGTGTTAG+TGG - chr2.1:65613291-65613310 MS.gene002905:CDS 40.0%
ATGTGAAACTTAAAGGACCC+AGG + chr2.1:65613866-65613885 None:intergenic 40.0%
CAAACAGCTGTGTCTCAAAT+TGG - chr2.1:65613411-65613430 MS.gene002905:intron 40.0%
CAAGTACATCATCACTTCCA+AGG - chr2.1:65612079-65612098 MS.gene002905:CDS 40.0%
CAATGTGTCAGTGTAATGTC+CGG - chr2.1:65612848-65612867 MS.gene002905:intron 40.0%
CAGCTCAAAAGCTCAAGATT+GGG - chr2.1:65612313-65612332 MS.gene002905:intron 40.0%
CTATGTGTCAGTATAGTGTC+TGG - chr2.1:65612802-65612821 MS.gene002905:intron 40.0%
CTTATGAGGCTGATAGATCA+AGG - chr2.1:65612253-65612272 MS.gene002905:intron 40.0%
CTTTCTATCAACCTCCGTTA+AGG + chr2.1:65613933-65613952 None:intergenic 40.0%
GACACATTGATATCAGTCAC+TGG + chr2.1:65612837-65612856 None:intergenic 40.0%
GACAGAATGTCAAGCTTATG+AGG - chr2.1:65612239-65612258 MS.gene002905:intron 40.0%
GAGCAGGCTAAACAGAATTA+AGG - chr2.1:65614213-65614232 MS.gene002905:CDS 40.0%
GGTTTCAGATAGGTCCTTAA+CGG - chr2.1:65613916-65613935 MS.gene002905:CDS 40.0%
GTACTGTTGAAAAGTGGCAT+CGG + chr2.1:65612692-65612711 None:intergenic 40.0%
TCTCCCTTGACATTTAGCAT+AGG - chr2.1:65613656-65613675 MS.gene002905:intron 40.0%
TGAGTGGATGAAAGATAGAG+AGG + chr2.1:65612180-65612199 None:intergenic 40.0%
TGGCACCTTCATATATTCAC+AGG - chr2.1:65613778-65613797 MS.gene002905:intron 40.0%
TGTGAAACTTAAAGGACCCA+GGG + chr2.1:65613865-65613884 None:intergenic 40.0%
TTCACTCACATCATCAAGAG+TGG - chr2.1:65612984-65613003 MS.gene002905:CDS 40.0%
! GTTAATCTCATGGGCTACTA+GGG - chr2.1:65612461-65612480 MS.gene002905:intron 40.0%
! GTTTTCACTTTCACTAGCAC+TGG - chr2.1:65612571-65612590 MS.gene002905:CDS 40.0%
! TGAATGCTTTTCCTTACCCT+TGG - chr2.1:65612397-65612416 MS.gene002905:intron 40.0%
! TGTTAATCTCATGGGCTACT+AGG - chr2.1:65612460-65612479 MS.gene002905:intron 40.0%
!! CTTAACGGAGGTTGATAGAA+AGG - chr2.1:65613931-65613950 MS.gene002905:CDS 40.0%
!! GGTTGTATTTTGCTACTTGG+TGG - chr2.1:65612334-65612353 MS.gene002905:intron 40.0%
!! GTTTCGAGTTGGTTTCAGAT+AGG + chr2.1:65613958-65613977 None:intergenic 40.0%
AATGAGAGAACCAGCAGCTA+AGG + chr2.1:65612439-65612458 None:intergenic 45.0%
ACCAGCAGCTAAGGATAAAG+TGG + chr2.1:65612430-65612449 None:intergenic 45.0%
ACGTGAAACTTAAAGGACCC+AGG - chr2.1:65614057-65614076 MS.gene002905:CDS 45.0%
AGTGCGCAACCACCAATTAT+TGG + chr2.1:65613089-65613108 None:intergenic 45.0%
CATCATCAAGAGTGGAGAAC+CGG - chr2.1:65612992-65613011 MS.gene002905:CDS 45.0%
CGTGAAACTTAAAGGACCCA+GGG - chr2.1:65614058-65614077 MS.gene002905:CDS 45.0%
CTTCAACCCATCAATGCTCT+TGG - chr2.1:65613737-65613756 MS.gene002905:intron 45.0%
GATAAAGTGGAAGTGAGCCA+AGG + chr2.1:65612417-65612436 None:intergenic 45.0%
GATACTAGCACACTGAAAGC+CGG + chr2.1:65613014-65613033 None:intergenic 45.0%
GCAGCTCAAAAGCTCAAGAT+TGG - chr2.1:65612312-65612331 MS.gene002905:intron 45.0%
GGAGCAGCTATTGCAATTCT+TGG - chr2.1:65613758-65613777 MS.gene002905:intron 45.0%
GGCAACAATGAGAGGTAAAC+TGG + chr2.1:65613068-65613087 None:intergenic 45.0%
TAGCTGTGGCACACACAATT+GGG - chr2.1:65612919-65612938 MS.gene002905:CDS 45.0%
TATAGGCCAAATACCTCCCT+GGG - chr2.1:65613846-65613865 MS.gene002905:CDS 45.0%
TCCACTTTATCCTTAGCTGC+TGG - chr2.1:65612426-65612445 MS.gene002905:intron 45.0%
TGAGGCCCCTAAAGTTAACT+TGG - chr2.1:65612488-65612507 MS.gene002905:intron 45.0%
TGTGGAGGGTCCTAAAGTTT+GGG - chr2.1:65613377-65613396 MS.gene002905:CDS 45.0%
TTATAGGCCAAATACCTCCC+TGG - chr2.1:65613845-65613864 MS.gene002905:CDS 45.0%
TTCAGATAGGTCCTTAACGG+AGG - chr2.1:65613919-65613938 MS.gene002905:CDS 45.0%
! GTGTCGGTACTGTTGAAAAG+TGG + chr2.1:65612698-65612717 None:intergenic 45.0%
! TTTTGAGCTGCTCCTTCACT+AGG + chr2.1:65612303-65612322 None:intergenic 45.0%
!! AGAGCATTGATGGGTTGAAG+TGG + chr2.1:65613737-65613756 None:intergenic 45.0%
!! TTCAACAGTACCGACACTTC+AGG - chr2.1:65612701-65612720 MS.gene002905:CDS 45.0%
!!! ACCTTTTGCTATTGCTGTGG+AGG - chr2.1:65613362-65613381 MS.gene002905:CDS 45.0%
!!! CACACCTTTTGCTATTGCTG+TGG - chr2.1:65613359-65613378 MS.gene002905:CDS 45.0%
!!! CCTTTTGCTATTGCTGTGGA+GGG - chr2.1:65613363-65613382 MS.gene002905:CDS 45.0%
AACTAGGCCAAATACCTCCC+TGG + chr2.1:65614078-65614097 None:intergenic 50.0%
ACTAGGCCAAATACCTCCCT+GGG + chr2.1:65614077-65614096 None:intergenic 50.0%
ATTGGGTATGCAGGTAGCTG+TGG - chr2.1:65612905-65612924 MS.gene002905:CDS 50.0%
CAACCAGCAGCCCAAACTTT+AGG + chr2.1:65613390-65613409 None:intergenic 50.0%
CCCTCCACAGCAATAGCAAA+AGG + chr2.1:65613366-65613385 None:intergenic 50.0%
CTAAAGTTTGGGCTGCTGGT+TGG - chr2.1:65613388-65613407 MS.gene002905:CDS 50.0%
CTGTGGAGGGTCCTAAAGTT+TGG - chr2.1:65613376-65613395 MS.gene002905:CDS 50.0%
GAAACTTAAAGGACCCAGGG+AGG - chr2.1:65614061-65614080 MS.gene002905:CDS 50.0%
GAAACTTAAAGGACCCAGGG+AGG + chr2.1:65614080-65614061 None:intergenic 50.0%
GTAGCTGTGGCACACACAAT+TGG - chr2.1:65612918-65612937 MS.gene002905:CDS 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG - chr2.1:65614068-65614087 MS.gene002905:CDS 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG + chr2.1:65614087-65614068 None:intergenic 50.0%
!! AGCTGCTCCAAGAGCATTGA+TGG + chr2.1:65613747-65613766 None:intergenic 50.0%
!! GCTGCTCCAAGAGCATTGAT+GGG + chr2.1:65613746-65613765 None:intergenic 50.0%
GGTCCTAAAGTTTGGGCTGC+TGG - chr2.1:65613384-65613403 MS.gene002905:CDS 55.0%
GTGGAAGTGAGCCAAGGGTA+AGG + chr2.1:65612411-65612430 None:intergenic 55.0%
! ATGGGCTACTAGGGTTGCTG+AGG - chr2.1:65612470-65612489 MS.gene002905:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 65612057 65614276 65612057 ID=MS.gene002905
chr2.1 mRNA 65612057 65614276 65612057 ID=MS.gene002905.t1;Parent=MS.gene002905
chr2.1 exon 65613800 65614276 65613800 ID=MS.gene002905.t1.exon1;Parent=MS.gene002905.t1
chr2.1 CDS 65613800 65614276 65613800 ID=cds.MS.gene002905.t1;Parent=MS.gene002905.t1
chr2.1 exon 65613190 65613415 65613190 ID=MS.gene002905.t1.exon2;Parent=MS.gene002905.t1
chr2.1 CDS 65613190 65613415 65613190 ID=cds.MS.gene002905.t1;Parent=MS.gene002905.t1
chr2.1 exon 65612885 65613107 65612885 ID=MS.gene002905.t1.exon3;Parent=MS.gene002905.t1
chr2.1 CDS 65612885 65613107 65612885 ID=cds.MS.gene002905.t1;Parent=MS.gene002905.t1
chr2.1 exon 65612534 65612747 65612534 ID=MS.gene002905.t1.exon4;Parent=MS.gene002905.t1
chr2.1 CDS 65612534 65612747 65612534 ID=cds.MS.gene002905.t1;Parent=MS.gene002905.t1
chr2.1 exon 65612057 65612119 65612057 ID=MS.gene002905.t1.exon5;Parent=MS.gene002905.t1
chr2.1 CDS 65612057 65612119 65612057 ID=cds.MS.gene002905.t1;Parent=MS.gene002905.t1
Gene Sequence

>MS.gene002905

ATGATCTCTTCAATCAAGTGCACAAGTACATCATCACTTCCAAGGTCTCAATTTTCAATTCTACCAACCATTCAAAATGTTGAACAAAACATGGGTCTCTCTCTACTTTCTTCCAAGAAACCTCTCTATCTTTCATCCACTCAAAATTTTGCATTGCTAACAAAACCCAAAAGAAAGAATGTGACAGAATGTCAAGCTTATGAGGCTGATAGATCAAGGCCACTAGAGATTAACATTGAACTTCCTAGTGAAGGAGCAGCTCAAAAGCTCAAGATTGGGTTGTATTTTGCTACTTGGTGGGCTTTGAATGTTGTTTTCAACATATACAACAAGAAAGTTTTGAATGCTTTTCCTTACCCTTGGCTCACTTCCACTTTATCCTTAGCTGCTGGTTCTCTCATTATGTTAATCTCATGGGCTACTAGGGTTGCTGAGGCCCCTAAAGTTAACTTGGATTTCTGGAAAGCCCTTTTTCCTGTAAGAAAAATCACCCCATTTTCTTTTCATTCTAATTGTTTTCACTTTCACTAGCACTGGCATAAGACACATTTAGTGTCTGACACCGATGCATGTAGTTACATTCAATTACTTTCATTTCTAAATTATTATCAGTGTATGTATCAGTGTCGTATCCGATGCCACTTTTCAACAGTACCGACACTTCAGGTTGAAAAAGTGTCTAATGTCCGACACTGAGAAATGTAGTTACATTCAATTAGTTTATTACTTAAATTATTACAGGTATCTATGTGTCAGTATAGTGTCTGGTTTCTATGTCCAGTGACTGATATCAATGTGTCAGTGTAATGTCCGGTGTTATTTTTAGTGCTCACCTAAGAAATTTCAAAATTGGGTATGCAGGTAGCTGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGTATGTCCAAAGTAGCAGTTTCATTCACTCACATCATCAAGAGTGGAGAACCGGCTTTCAGTGTGCTAGTATCAAGATTCATGCTTGGAGAAGCATTCGCTATGCCAGTTTACCTCTCATTGTTGCCAATAATTGGTGGTTGCGCACTAGCTGCTATGACAGAACTCAATTTCAATATGATTGGTAAGAACAACATAACAAACAATTATTCACATAAATATAAAGTACAATATCAATGCTCTAAATGGATCAATTCTTGTTTCAGGATTTATGGGAGCTATGATATCAAATTTGGCATTTGTATTCAGGAATATATTCTCAAAGAAAGGAATGAATGGGATGAGTGTTAGTGGAATGAACTATTATGCTTGTCTTTCAATGTTATCTCTTCTAATTCTCACACCTTTTGCTATTGCTGTGGAGGGTCCTAAAGTTTGGGCTGCTGGTTGGCAAACAGCTGTGTCTCAAATTGGTCCGAATTTTGTTTGGTAAGCACAAAACTCTACGAATTTATGTGTTAGTTCAATGATAAAAGTTTGATTTTCTAAAGTGATATACTAGTTCAAATTTCTTCGGAAACGCTTTAATTAATAATAATTTGGGATTTTTTTTTTTATGTTAACAGGTGGGTGGTTGCACAAAGTGTGTTCTACCATTTATATAATCAAGTGTCATACATGTCTCTTGATCAGATTTCTCCCTTGACATTTAGCATAGGAAATACAATGAAGAGAATTTCTGTAATAGTCTCTTCCATCATTATCTTTCACACACCACTTCAACCCATCAATGCTCTTGGAGCAGCTATTGCAATTCTTGGCACCTTCATATATTCACAGGTGAATTCTCATTTCCTACTAAAGTATGTACTTGATCTTTATAGTTTATAGGCCAAATACCTCCCTGGGTCCTTTAAGTTTCACATTTGTAACAGATAGGTCCTTTAAGTTTCTAAGGTTTCAGATAGGTCCTTAACGGAGGTTGATAGAAAGGACCTATCTGAAACCAACTCGAAACTTAAAGACCTATCTGAAACCTTAGAAACTTAAAGGACCTATTTGTAACCTTTGAAACTTAAAGGACCAATATGTTACAAACGTGAAACTTAAAGGACCCAGGGAGGTATTTGGCCTAGTTTATACTTTGGGAATGTTCTTTTTATGTGTGTGTGTGTGTTTAATATCTTGTTTGAGATTGAAACATTACGTGAGGGATGCAATTAATTAACACAATTTCTGTTGATTTTTTGAAAGAGCAGGCTAAACAGAATTAAGGTTGCGGTTTTGAAGCTTTTATCGAAAGCATGGGAACGATGA
Protein sequence

>MS.gene002905.t1

MISSIKCTSTSSLPRSQFSILPTIQNVEQNMGLSLLSSKKPLYLSSTQNFALLTKPKRKNVTECQAYEADRSRPLEINIELPSEGAAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATRVAEAPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFMLGEAFAMPVYLSLLPIIGGCALAAMTELNFNMIGFMGAMISNLAFVFRNIFSKKGMNGMSVSGMNYYACLSMLSLLILTPFAIAVEGPKVWAAGWQTAVSQIGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPLQPINALGAAIAILGTFIYSQSRLNRIKVAVLKLLSKAWER