Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74587.t1 | XP_003594481.1 | 100 | 263 | 0 | 0 | 1 | 263 | 146 | 408 | 3.50E-142 | 514.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74587.t1 | Q9LF61 | 83.7 | 263 | 43 | 0 | 1 | 263 | 155 | 417 | 7.0e-123 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74587.t1 | G7IJS9 | 100.0 | 263 | 0 | 0 | 1 | 263 | 146 | 408 | 2.5e-142 | 514.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene74587 | 0.807911 | 4.01E-50 | -1.69E-46 |
| MS.gene049150 | MS.gene74587 | 0.861222 | 1.19E-63 | -1.69E-46 |
| MS.gene049151 | MS.gene74587 | 0.842566 | 2.39E-58 | -1.69E-46 |
| MS.gene049153 | MS.gene74587 | 0.856974 | 2.24E-62 | -1.69E-46 |
| MS.gene049260 | MS.gene74587 | 0.829762 | 4.29E-55 | -1.69E-46 |
| MS.gene049284 | MS.gene74587 | 0.806583 | 7.67E-50 | -1.69E-46 |
| MS.gene049297 | MS.gene74587 | 0.814354 | 1.61E-51 | -1.69E-46 |
| MS.gene049346 | MS.gene74587 | 0.840552 | 8.12E-58 | -1.69E-46 |
| MS.gene049351 | MS.gene74587 | 0.816972 | 4.20E-52 | -1.69E-46 |
| MS.gene049378 | MS.gene74587 | 0.815455 | 9.16E-52 | -1.69E-46 |
| MS.gene049491 | MS.gene74587 | 0.82183 | 3.28E-53 | -1.69E-46 |
| MS.gene049599 | MS.gene74587 | -0.858111 | 1.03E-62 | -1.69E-46 |
| MS.gene049661 | MS.gene74587 | 0.831866 | 1.31E-55 | -1.69E-46 |
| MS.gene049662 | MS.gene74587 | 0.836665 | 8.19E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene74587 | 0.908202 | 2.21E-81 | -1.69E-46 |
| MS.gene049910 | MS.gene74587 | 0.856632 | 2.82E-62 | -1.69E-46 |
| MS.gene049915 | MS.gene74587 | 0.834237 | 3.37E-56 | -1.69E-46 |
| MS.gene050128 | MS.gene74587 | 0.843526 | 1.33E-58 | -1.69E-46 |
| MS.gene050226 | MS.gene74587 | 0.831288 | 1.82E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene74587 | 0.845797 | 3.25E-59 | -1.69E-46 |
| MS.gene050228 | MS.gene74587 | 0.823294 | 1.50E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene74587 | 0.890228 | 1.19E-73 | -1.69E-46 |
| MS.gene050319 | MS.gene74587 | -0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene050330 | MS.gene74587 | -0.81729 | 3.56E-52 | -1.69E-46 |
| MS.gene050397 | MS.gene74587 | 0.875973 | 2.02E-68 | -1.69E-46 |
| MS.gene050426 | MS.gene74587 | -0.80839 | 3.17E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene74587 | 0.804849 | 1.77E-49 | -1.69E-46 |
| MS.gene050464 | MS.gene74587 | 0.842581 | 2.37E-58 | -1.69E-46 |
| MS.gene050529 | MS.gene74587 | 0.853207 | 2.78E-61 | -1.69E-46 |
| MS.gene050558 | MS.gene74587 | 0.827186 | 1.80E-54 | -1.69E-46 |
| MS.gene050623 | MS.gene74587 | -0.840354 | 9.15E-58 | -1.69E-46 |
| MS.gene050642 | MS.gene74587 | 0.870299 | 1.62E-66 | -1.69E-46 |
| MS.gene050670 | MS.gene74587 | 0.821307 | 4.33E-53 | -1.69E-46 |
| MS.gene050762 | MS.gene74587 | 0.824951 | 6.11E-54 | -1.69E-46 |
| MS.gene050763 | MS.gene74587 | 0.827723 | 1.34E-54 | -1.69E-46 |
| MS.gene050787 | MS.gene74587 | 0.820346 | 7.20E-53 | -1.69E-46 |
| MS.gene050820 | MS.gene74587 | 0.803456 | 3.46E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene74587 | 0.8291 | 6.22E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene74587 | 0.822534 | 2.25E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene74587 | -0.840802 | 6.98E-58 | -1.69E-46 |
| MS.gene051471 | MS.gene74587 | 0.824674 | 7.10E-54 | -1.69E-46 |
| MS.gene051582 | MS.gene74587 | 0.807112 | 5.92E-50 | -1.69E-46 |
| MS.gene051662 | MS.gene74587 | 0.809909 | 1.50E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene74587 | 0.834624 | 2.69E-56 | -1.69E-46 |
| MS.gene051860 | MS.gene74587 | 0.906521 | 1.36E-80 | -1.69E-46 |
| MS.gene051983 | MS.gene74587 | 0.848179 | 7.23E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene74587 | -0.836414 | 9.49E-57 | -1.69E-46 |
| MS.gene052077 | MS.gene74587 | 0.862653 | 4.35E-64 | -1.69E-46 |
| MS.gene052078 | MS.gene74587 | 0.849958 | 2.32E-60 | -1.69E-46 |
| MS.gene052178 | MS.gene74587 | 0.859549 | 3.83E-63 | -1.69E-46 |
| MS.gene052188 | MS.gene74587 | 0.863091 | 3.19E-64 | -1.69E-46 |
| MS.gene052207 | MS.gene74587 | 0.843177 | 1.64E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene74587 | 0.877797 | 4.71E-69 | -1.69E-46 |
| MS.gene052255 | MS.gene74587 | 0.844471 | 7.41E-59 | -1.69E-46 |
| MS.gene052310 | MS.gene74587 | 0.844818 | 5.97E-59 | -1.69E-46 |
| MS.gene052326 | MS.gene74587 | 0.800526 | 1.38E-48 | -1.69E-46 |
| MS.gene052340 | MS.gene74587 | 0.882021 | 1.48E-70 | -1.69E-46 |
| MS.gene052485 | MS.gene74587 | 0.826216 | 3.06E-54 | -1.69E-46 |
| MS.gene052917 | MS.gene74587 | -0.82102 | 5.04E-53 | -1.69E-46 |
| MS.gene05316 | MS.gene74587 | 0.817872 | 2.63E-52 | -1.69E-46 |
| MS.gene053184 | MS.gene74587 | 0.804683 | 1.92E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene74587 | 0.835575 | 1.55E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene74587 | 0.866108 | 3.63E-65 | -1.69E-46 |
| MS.gene053559 | MS.gene74587 | 0.820878 | 5.43E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene74587 | 0.922802 | 6.12E-89 | -1.69E-46 |
| MS.gene054010 | MS.gene74587 | 0.809206 | 2.12E-50 | -1.69E-46 |
| MS.gene054011 | MS.gene74587 | 0.844125 | 9.17E-59 | -1.69E-46 |
| MS.gene054012 | MS.gene74587 | 0.824622 | 7.30E-54 | -1.69E-46 |
| MS.gene054013 | MS.gene74587 | 0.818395 | 2.00E-52 | -1.69E-46 |
| MS.gene054123 | MS.gene74587 | 0.805188 | 1.51E-49 | -1.69E-46 |
| MS.gene054183 | MS.gene74587 | 0.837845 | 4.09E-57 | -1.69E-46 |
| MS.gene054184 | MS.gene74587 | 0.850056 | 2.17E-60 | -1.69E-46 |
| MS.gene054185 | MS.gene74587 | 0.857059 | 2.11E-62 | -1.69E-46 |
| MS.gene054349 | MS.gene74587 | 0.821067 | 4.92E-53 | -1.69E-46 |
| MS.gene054379 | MS.gene74587 | 0.830435 | 2.94E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene74587 | 0.886219 | 4.14E-72 | -1.69E-46 |
| MS.gene054542 | MS.gene74587 | 0.861999 | 6.91E-64 | -1.69E-46 |
| MS.gene054667 | MS.gene74587 | 0.80132 | 9.52E-49 | -1.69E-46 |
| MS.gene054918 | MS.gene74587 | 0.817243 | 3.65E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene74587 | 0.844484 | 7.35E-59 | -1.69E-46 |
| MS.gene054942 | MS.gene74587 | 0.820882 | 5.42E-53 | -1.69E-46 |
| MS.gene054983 | MS.gene74587 | 0.85816 | 9.97E-63 | -1.69E-46 |
| MS.gene055116 | MS.gene74587 | 0.859927 | 2.95E-63 | -1.69E-46 |
| MS.gene055277 | MS.gene74587 | 0.877881 | 4.40E-69 | -1.69E-46 |
| MS.gene055390 | MS.gene74587 | 0.852126 | 5.66E-61 | -1.69E-46 |
| MS.gene055422 | MS.gene74587 | 0.901241 | 3.27E-78 | -1.69E-46 |
| MS.gene055428 | MS.gene74587 | 0.865458 | 5.82E-65 | -1.69E-46 |
| MS.gene05553 | MS.gene74587 | 0.816613 | 5.05E-52 | -1.69E-46 |
| MS.gene055604 | MS.gene74587 | 0.858268 | 9.25E-63 | -1.69E-46 |
| MS.gene055712 | MS.gene74587 | 0.806756 | 7.05E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene74587 | 0.844145 | 9.06E-59 | -1.69E-46 |
| MS.gene056069 | MS.gene74587 | -0.819277 | 1.26E-52 | -1.69E-46 |
| MS.gene056191 | MS.gene74587 | 0.842531 | 2.44E-58 | -1.69E-46 |
| MS.gene056314 | MS.gene74587 | 0.82373 | 1.18E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene74587 | 0.809316 | 2.01E-50 | -1.69E-46 |
| MS.gene056410 | MS.gene74587 | 0.807312 | 5.38E-50 | -1.69E-46 |
| MS.gene056447 | MS.gene74587 | 0.812923 | 3.32E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene74587 | 0.801367 | 9.31E-49 | -1.69E-46 |
| MS.gene056612 | MS.gene74587 | 0.860441 | 2.06E-63 | -1.69E-46 |
| MS.gene056659 | MS.gene74587 | 0.8316 | 1.52E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene74587 | 0.819751 | 9.85E-53 | -1.69E-46 |
| MS.gene056772 | MS.gene74587 | 0.808699 | 2.72E-50 | -1.69E-46 |
| MS.gene056875 | MS.gene74587 | 0.802756 | 4.82E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene74587 | -0.822167 | 2.74E-53 | -1.69E-46 |
| MS.gene056979 | MS.gene74587 | 0.847477 | 1.13E-59 | -1.69E-46 |
| MS.gene05702 | MS.gene74587 | 0.85296 | 3.28E-61 | -1.69E-46 |
| MS.gene057121 | MS.gene74587 | 0.85875 | 6.65E-63 | -1.69E-46 |
| MS.gene057245 | MS.gene74587 | 0.847019 | 1.51E-59 | -1.69E-46 |
| MS.gene057260 | MS.gene74587 | 0.808479 | 3.03E-50 | -1.69E-46 |
| MS.gene05733 | MS.gene74587 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene057439 | MS.gene74587 | 0.808374 | 3.20E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene74587 | 0.862371 | 5.32E-64 | -1.69E-46 |
| MS.gene057449 | MS.gene74587 | 0.860638 | 1.80E-63 | -1.69E-46 |
| MS.gene057450 | MS.gene74587 | 0.862823 | 3.86E-64 | -1.69E-46 |
| MS.gene057469 | MS.gene74587 | 0.844257 | 8.46E-59 | -1.69E-46 |
| MS.gene057749 | MS.gene74587 | 0.808864 | 2.51E-50 | -1.69E-46 |
| MS.gene057750 | MS.gene74587 | 0.818687 | 1.72E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene74587 | 0.823002 | 1.75E-53 | -1.69E-46 |
| MS.gene057779 | MS.gene74587 | 0.820882 | 5.42E-53 | -1.69E-46 |
| MS.gene057794 | MS.gene74587 | 0.806554 | 7.78E-50 | -1.69E-46 |
| MS.gene057796 | MS.gene74587 | 0.817225 | 3.68E-52 | -1.69E-46 |
| MS.gene058002 | MS.gene74587 | 0.88746 | 1.40E-72 | -1.69E-46 |
| MS.gene058082 | MS.gene74587 | 0.812473 | 4.17E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene74587 | 0.893801 | 4.48E-75 | -1.69E-46 |
| MS.gene058139 | MS.gene74587 | 0.813173 | 2.93E-51 | -1.69E-46 |
| MS.gene058142 | MS.gene74587 | 0.854544 | 1.15E-61 | -1.69E-46 |
| MS.gene05842 | MS.gene74587 | 0.83143 | 1.68E-55 | -1.69E-46 |
| MS.gene058435 | MS.gene74587 | 0.811176 | 7.98E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene74587 | 0.857172 | 1.96E-62 | -1.69E-46 |
| MS.gene058710 | MS.gene74587 | 0.859621 | 3.65E-63 | -1.69E-46 |
| MS.gene058749 | MS.gene74587 | 0.836861 | 7.30E-57 | -1.69E-46 |
| MS.gene058833 | MS.gene74587 | 0.803462 | 3.45E-49 | -1.69E-46 |
| MS.gene058845 | MS.gene74587 | 0.847954 | 8.34E-60 | -1.69E-46 |
| MS.gene05886 | MS.gene74587 | 0.830393 | 3.01E-55 | -1.69E-46 |
| MS.gene058928 | MS.gene74587 | 0.834847 | 2.37E-56 | -1.69E-46 |
| MS.gene059033 | MS.gene74587 | -0.815357 | 9.64E-52 | -1.69E-46 |
| MS.gene05907 | MS.gene74587 | 0.885817 | 5.86E-72 | -1.69E-46 |
| MS.gene059285 | MS.gene74587 | 0.86663 | 2.48E-65 | -1.69E-46 |
| MS.gene059294 | MS.gene74587 | 0.849744 | 2.66E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene74587 | 0.836087 | 1.15E-56 | -1.69E-46 |
| MS.gene059421 | MS.gene74587 | 0.833653 | 4.71E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene74587 | 0.870907 | 1.02E-66 | -1.69E-46 |
| MS.gene059597 | MS.gene74587 | 0.865212 | 6.95E-65 | -1.69E-46 |
| MS.gene059676 | MS.gene74587 | 0.822964 | 1.79E-53 | -1.69E-46 |
| MS.gene059688 | MS.gene74587 | 0.847781 | 9.31E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene74587 | 0.856908 | 2.34E-62 | -1.69E-46 |
| MS.gene059695 | MS.gene74587 | 0.846973 | 1.55E-59 | -1.69E-46 |
| MS.gene059708 | MS.gene74587 | 0.80978 | 1.60E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene74587 | 0.804556 | 2.04E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene74587 | 0.929605 | 5.47E-93 | -1.69E-46 |
| MS.gene059894 | MS.gene74587 | 0.876444 | 1.39E-68 | -1.69E-46 |
| MS.gene059899 | MS.gene74587 | 0.822511 | 2.28E-53 | -1.69E-46 |
| MS.gene060247 | MS.gene74587 | 0.802059 | 6.71E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene74587 | 0.866379 | 2.98E-65 | -1.69E-46 |
| MS.gene060476 | MS.gene74587 | 0.823756 | 1.17E-53 | -1.69E-46 |
| MS.gene060495 | MS.gene74587 | 0.833178 | 6.19E-56 | -1.69E-46 |
| MS.gene060559 | MS.gene74587 | 0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene060986 | MS.gene74587 | 0.813083 | 3.06E-51 | -1.69E-46 |
| MS.gene060994 | MS.gene74587 | 0.810224 | 1.28E-50 | -1.69E-46 |
| MS.gene061000 | MS.gene74587 | 0.805562 | 1.26E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene74587 | 0.909711 | 4.21E-82 | -1.69E-46 |
| MS.gene061051 | MS.gene74587 | -0.839842 | 1.24E-57 | -1.69E-46 |
| MS.gene061154 | MS.gene74587 | 0.808089 | 3.68E-50 | -1.69E-46 |
| MS.gene061159 | MS.gene74587 | 0.811723 | 6.07E-51 | -1.69E-46 |
| MS.gene061265 | MS.gene74587 | 0.800374 | 1.49E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene33531 | MS.gene74587 | PPI |
| MS.gene74587 | MS.gene042249 | PPI |
| MS.gene62056 | MS.gene74587 | PPI |
| MS.gene74587 | MS.gene047951 | PPI |
| MS.gene74587 | MS.gene01868 | PPI |
| MS.gene74587 | MS.gene042248 | PPI |
| MS.gene74587 | MS.gene012611 | PPI |
| MS.gene002905 | MS.gene74587 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74587.t1 | MTR_2g029180 | 100.000 | 263 | 0 | 0 | 1 | 263 | 146 | 408 | 0.0 | 526 |
| MS.gene74587.t1 | MTR_3g049400 | 55.200 | 250 | 107 | 4 | 1 | 248 | 153 | 399 | 4.31e-82 | 252 |
| MS.gene74587.t1 | MTR_2g022700 | 54.800 | 250 | 108 | 4 | 1 | 248 | 147 | 393 | 1.65e-81 | 250 |
| MS.gene74587.t1 | MTR_4g131800 | 50.741 | 270 | 109 | 5 | 1 | 247 | 144 | 412 | 2.86e-67 | 225 |
| MS.gene74587.t1 | MTR_4g105630 | 44.048 | 252 | 135 | 4 | 4 | 252 | 131 | 379 | 5.31e-59 | 192 |
| MS.gene74587.t1 | MTR_6g005480 | 46.154 | 260 | 135 | 4 | 3 | 258 | 158 | 416 | 1.06e-58 | 192 |
| MS.gene74587.t1 | MTR_4g088350 | 42.045 | 264 | 138 | 6 | 2 | 261 | 32 | 284 | 1.38e-57 | 186 |
| MS.gene74587.t1 | MTR_5g044220 | 40.625 | 256 | 142 | 5 | 5 | 256 | 151 | 400 | 2.55e-56 | 186 |
| MS.gene74587.t1 | MTR_4g088350 | 42.045 | 264 | 138 | 6 | 2 | 261 | 143 | 395 | 5.07e-56 | 185 |
| MS.gene74587.t1 | MTR_4g105630 | 43.210 | 243 | 132 | 4 | 4 | 243 | 131 | 370 | 5.31e-55 | 181 |
| MS.gene74587.t1 | MTR_3g077640 | 44.531 | 256 | 136 | 4 | 4 | 256 | 156 | 408 | 4.55e-54 | 180 |
| MS.gene74587.t1 | MTR_4g105630 | 40.816 | 196 | 110 | 4 | 4 | 196 | 131 | 323 | 1.32e-34 | 127 |
| MS.gene74587.t1 | MTR_4g105630 | 41.143 | 175 | 95 | 3 | 4 | 170 | 131 | 305 | 1.17e-31 | 119 |
| MS.gene74587.t1 | MTR_3g072380 | 29.046 | 241 | 164 | 4 | 7 | 245 | 67 | 302 | 1.01e-19 | 87.4 |
| MS.gene74587.t1 | MTR_1g030320 | 28.099 | 242 | 165 | 6 | 7 | 245 | 66 | 301 | 1.16e-17 | 81.6 |
| MS.gene74587.t1 | MTR_3g070000 | 24.800 | 250 | 181 | 5 | 7 | 253 | 77 | 322 | 9.61e-15 | 73.2 |
| MS.gene74587.t1 | MTR_4g101860 | 28.571 | 217 | 147 | 4 | 40 | 253 | 139 | 350 | 1.24e-14 | 73.2 |
| MS.gene74587.t1 | MTR_4g018760 | 26.383 | 235 | 167 | 4 | 16 | 248 | 75 | 305 | 1.60e-14 | 72.4 |
| MS.gene74587.t1 | MTR_5g081710 | 25.806 | 217 | 155 | 4 | 39 | 253 | 94 | 306 | 1.37e-13 | 69.7 |
| MS.gene74587.t1 | MTR_3g462070 | 24.434 | 221 | 157 | 6 | 39 | 256 | 95 | 308 | 1.18e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74587.t1 | AT5G17630 | 83.650 | 263 | 43 | 0 | 1 | 263 | 155 | 417 | 2.07e-160 | 452 |
| MS.gene74587.t1 | AT5G54800 | 55.200 | 250 | 107 | 4 | 1 | 248 | 140 | 386 | 2.88e-82 | 252 |
| MS.gene74587.t1 | AT1G61800 | 52.800 | 250 | 113 | 4 | 1 | 248 | 140 | 386 | 1.86e-80 | 247 |
| MS.gene74587.t1 | AT1G61800 | 52.610 | 249 | 113 | 4 | 1 | 247 | 140 | 385 | 2.10e-79 | 245 |
| MS.gene74587.t1 | AT5G46110 | 39.623 | 265 | 150 | 5 | 2 | 262 | 39 | 297 | 1.15e-57 | 186 |
| MS.gene74587.t1 | AT5G46110 | 39.623 | 265 | 150 | 5 | 2 | 262 | 152 | 410 | 1.86e-56 | 186 |
| MS.gene74587.t1 | AT5G46110 | 40.530 | 264 | 142 | 6 | 2 | 261 | 152 | 404 | 3.21e-55 | 183 |
| MS.gene74587.t1 | AT5G46110 | 38.491 | 265 | 142 | 6 | 2 | 262 | 152 | 399 | 3.85e-52 | 175 |
| MS.gene74587.t1 | AT3G01550 | 44.177 | 249 | 130 | 4 | 3 | 248 | 124 | 366 | 6.10e-52 | 174 |
| MS.gene74587.t1 | AT3G01550 | 44.177 | 249 | 135 | 3 | 3 | 248 | 124 | 371 | 6.30e-52 | 174 |
| MS.gene74587.t1 | AT5G33320 | 41.406 | 256 | 146 | 3 | 3 | 256 | 153 | 406 | 2.44e-48 | 165 |
| MS.gene74587.t1 | AT4G03950 | 36.864 | 236 | 103 | 7 | 27 | 257 | 67 | 261 | 2.18e-33 | 122 |
| MS.gene74587.t1 | AT1G77610 | 30.769 | 208 | 138 | 3 | 39 | 245 | 94 | 296 | 5.85e-20 | 88.2 |
| MS.gene74587.t1 | AT1G21870 | 27.801 | 241 | 167 | 4 | 7 | 245 | 67 | 302 | 5.37e-19 | 85.5 |
| MS.gene74587.t1 | AT1G12500 | 26.667 | 225 | 154 | 5 | 40 | 261 | 145 | 361 | 9.50e-15 | 73.6 |
| MS.gene74587.t1 | AT5G05820 | 24.603 | 252 | 179 | 6 | 7 | 253 | 63 | 308 | 5.03e-13 | 68.2 |
| MS.gene74587.t1 | AT3G11320 | 25.114 | 219 | 154 | 5 | 39 | 253 | 96 | 308 | 2.60e-12 | 65.9 |
Find 40 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATCTGCCATTGCTATTCT+TGG | 0.173141 | 2.3:+60387436 | MS.gene74587:CDS |
| CCATTTGGATGCTTGTTCTT+TGG | 0.202656 | 2.3:+60386729 | None:intergenic |
| AGTGATTGTGTCTTCGATTT+TGG | 0.242143 | 2.3:+60387378 | MS.gene74587:CDS |
| TTTCCAACAGAGAAAGTTAA+TGG | 0.242242 | 2.3:-60387337 | None:intergenic |
| AGCTTGTGTTTCATTCTCTA+AGG | 0.279265 | 2.3:+60386844 | MS.gene74587:CDS |
| TGGTGATAGGTATCCAATTC+AGG | 0.283536 | 2.3:+60386937 | MS.gene74587:CDS |
| CAAAATTTCAAAGAAGTTGA+TGG | 0.305953 | 2.3:+60387103 | MS.gene74587:CDS |
| GTTGATGGTTTGAACTTATA+TGG | 0.310417 | 2.3:+60387118 | MS.gene74587:CDS |
| CCAAGTAGTGCAAAGATAAA+AGG | 0.314629 | 2.3:-60386788 | None:intergenic |
| ATTGAAAGCCAAACCTGAAT+TGG | 0.343853 | 2.3:-60386950 | None:intergenic |
| GTTAGGCCTCTTAATGGTCT+TGG | 0.367474 | 2.3:+60387415 | MS.gene74587:CDS |
| TTTCTTCTGTTCTTGGTGAT+AGG | 0.374490 | 2.3:+60386924 | MS.gene74587:CDS |
| GATCTGCCATTGCTATTCTT+GGG | 0.384636 | 2.3:+60387437 | MS.gene74587:CDS |
| CCTGCTTTGTTTCACACAAT+AGG | 0.391158 | 2.3:+60386812 | MS.gene74587:CDS |
| TAAGAGGCCTAACCGGATTC+CGG | 0.403937 | 2.3:-60387405 | None:intergenic |
| ATGGATTCCAGGGTATTATA+AGG | 0.414035 | 2.3:+60387204 | MS.gene74587:CDS |
| GAAGGTTCTCAATGGATTCC+AGG | 0.417158 | 2.3:+60387193 | MS.gene74587:CDS |
| AAAGAACAACCAAGCACAAT+TGG | 0.428671 | 2.3:-60386977 | None:intergenic |
| ATAGGTATCCAATTCAGGTT+TGG | 0.441304 | 2.3:+60386942 | MS.gene74587:CDS |
| AATCCGGTTAGGCCTCTTAA+TGG | 0.445202 | 2.3:+60387409 | MS.gene74587:CDS |
| GAGGTATCTTTCAATGTTGG+AGG | 0.458201 | 2.3:+60387013 | MS.gene74587:CDS |
| AGTCCATTAACTTTCTCTGT+TGG | 0.459007 | 2.3:+60387334 | MS.gene74587:CDS |
| AGACCATTAAGAGGCCTAAC+CGG | 0.467988 | 2.3:-60387412 | None:intergenic |
| AAGAAAGCAAAGAAAATTGA+AGG | 0.478846 | 2.3:+60387490 | MS.gene74587:CDS |
| TTCTTTAGCTGCTGTTACTG+AGG | 0.482713 | 2.3:+60386994 | MS.gene74587:CDS |
| TATAAGGCGCTTGAAGCGAT+TGG | 0.482837 | 2.3:+60387220 | MS.gene74587:CDS |
| ATGGTTTGAACTTATATGGT+TGG | 0.489171 | 2.3:+60387122 | MS.gene74587:CDS |
| TGTGCACTTATTAGCAATGT+TGG | 0.491248 | 2.3:+60387043 | MS.gene74587:CDS |
| CTTTCAATGTTGGAGGATTG+TGG | 0.498343 | 2.3:+60387020 | MS.gene74587:CDS |
| ACTGAGGTATCTTTCAATGT+TGG | 0.506410 | 2.3:+60387010 | MS.gene74587:CDS |
| TCAATCATCTTATCAAGCAT+TGG | 0.516384 | 2.3:+60387303 | MS.gene74587:CDS |
| TGGTGTTCCGGAATCCGGTT+AGG | 0.528399 | 2.3:+60387398 | MS.gene74587:CDS |
| GCAGATCCAAGACCATTAAG+AGG | 0.528834 | 2.3:-60387421 | None:intergenic |
| AGAAAGCAAAGAAAATTGAA+GGG | 0.581786 | 2.3:+60387491 | MS.gene74587:CDS |
| AAGGTTCTCAATGGATTCCA+GGG | 0.590612 | 2.3:+60387194 | MS.gene74587:CDS |
| CCTATTGTGTGAAACAAAGC+AGG | 0.603409 | 2.3:-60386812 | None:intergenic |
| TGGAAATACAATGAAGAGAG+TGG | 0.612192 | 2.3:+60387354 | MS.gene74587:CDS |
| AAAAGTCCCAAGAATAGCAA+TGG | 0.616189 | 2.3:-60387443 | None:intergenic |
| GAAAGCAAAGAAAATTGAAG+GGG | 0.622560 | 2.3:+60387492 | MS.gene74587:CDS |
| TCAAGCGCCTTATAATACCC+TGG | 0.633740 | 2.3:-60387211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAAGGTTTTGAGATTTT+TGG | - | chr2.3:60386776-60386795 | None:intergenic | 20.0% |
| !!! | TTCATTTATGTATCTTTTTC+CGG | + | chr2.3:60387156-60387175 | MS.gene74587:CDS | 20.0% |
| ! | AAGAAAGCAAAGAAAATTGA+AGG | + | chr2.3:60387490-60387509 | MS.gene74587:CDS | 25.0% |
| ! | AGAAAGCAAAGAAAATTGAA+GGG | + | chr2.3:60387491-60387510 | MS.gene74587:CDS | 25.0% |
| ! | CAAAATTTCAAAGAAGTTGA+TGG | + | chr2.3:60387103-60387122 | MS.gene74587:CDS | 25.0% |
| ! | GAAAATATGACAGAAAAAAC+AGG | - | chr2.3:60386908-60386927 | None:intergenic | 25.0% |
| !!! | GACTTTTTATATTTGGGTTT+TGG | + | chr2.3:60387252-60387271 | MS.gene74587:CDS | 25.0% |
| ACCCAAATATAAAAAGTCGA+AGG | - | chr2.3:60387250-60387269 | None:intergenic | 30.0% | |
| ATGGTTTGAACTTATATGGT+TGG | + | chr2.3:60387122-60387141 | MS.gene74587:CDS | 30.0% | |
| GAAAGCAAAGAAAATTGAAG+GGG | + | chr2.3:60387492-60387511 | MS.gene74587:CDS | 30.0% | |
| TCAATCATCTTATCAAGCAT+TGG | + | chr2.3:60387303-60387322 | MS.gene74587:CDS | 30.0% | |
| TTTCCAACAGAGAAAGTTAA+TGG | - | chr2.3:60387340-60387359 | None:intergenic | 30.0% | |
| ! | GCCTTCGACTTTTTATATTT+GGG | + | chr2.3:60387246-60387265 | MS.gene74587:CDS | 30.0% |
| ! | GTCATATTTTCTTCTGTTCT+TGG | + | chr2.3:60386917-60386936 | MS.gene74587:CDS | 30.0% |
| ! | TCAATTTTACCAATTGTGCT+TGG | + | chr2.3:60386968-60386987 | MS.gene74587:CDS | 30.0% |
| ! | TTTTTGTAGAAGGTTCTCAA+TGG | + | chr2.3:60387185-60387204 | MS.gene74587:CDS | 30.0% |
| !! | GTTGATGGTTTGAACTTATA+TGG | + | chr2.3:60387118-60387137 | MS.gene74587:CDS | 30.0% |
| !!! | TATATTTGGGTTTTGGTTTC+TGG | + | chr2.3:60387259-60387278 | MS.gene74587:CDS | 30.0% |
| AAAAGTCCCAAGAATAGCAA+TGG | - | chr2.3:60387446-60387465 | None:intergenic | 35.0% | |
| AAAGAACAACCAAGCACAAT+TGG | - | chr2.3:60386980-60386999 | None:intergenic | 35.0% | |
| AGCTTGTGTTTCATTCTCTA+AGG | + | chr2.3:60386844-60386863 | MS.gene74587:CDS | 35.0% | |
| AGTCCATTAACTTTCTCTGT+TGG | + | chr2.3:60387334-60387353 | MS.gene74587:CDS | 35.0% | |
| ATTGAAAGCCAAACCTGAAT+TGG | - | chr2.3:60386953-60386972 | None:intergenic | 35.0% | |
| CCAAGTAGTGCAAAGATAAA+AGG | - | chr2.3:60386791-60386810 | None:intergenic | 35.0% | |
| TGGAAATACAATGAAGAGAG+TGG | + | chr2.3:60387354-60387373 | MS.gene74587:CDS | 35.0% | |
| TGTGCACTTATTAGCAATGT+TGG | + | chr2.3:60387043-60387062 | MS.gene74587:CDS | 35.0% | |
| ! | ACTGAGGTATCTTTCAATGT+TGG | + | chr2.3:60387010-60387029 | MS.gene74587:CDS | 35.0% |
| ! | AGTGATTGTGTCTTCGATTT+TGG | + | chr2.3:60387378-60387397 | MS.gene74587:CDS | 35.0% |
| ! | ATAGGTATCCAATTCAGGTT+TGG | + | chr2.3:60386942-60386961 | MS.gene74587:CDS | 35.0% |
| ! | ATGGATTCCAGGGTATTATA+AGG | + | chr2.3:60387204-60387223 | MS.gene74587:CDS | 35.0% |
| ! | CCTTTTATCTTTGCACTACT+TGG | + | chr2.3:60386788-60386807 | MS.gene74587:CDS | 35.0% |
| ! | CGCCTTCGACTTTTTATATT+TGG | + | chr2.3:60387245-60387264 | MS.gene74587:CDS | 35.0% |
| ! | TTTCTTCTGTTCTTGGTGAT+AGG | + | chr2.3:60386924-60386943 | MS.gene74587:CDS | 35.0% |
| !!! | GGTTTTGAGATTTTTGGACA+AGG | - | chr2.3:60386770-60386789 | None:intergenic | 35.0% |
| CCTATTGTGTGAAACAAAGC+AGG | - | chr2.3:60386815-60386834 | None:intergenic | 40.0% | |
| CCTTCTACAAAAATCGCTAC+CGG | - | chr2.3:60387178-60387197 | None:intergenic | 40.0% | |
| CTTTCAATGTTGGAGGATTG+TGG | + | chr2.3:60387020-60387039 | MS.gene74587:CDS | 40.0% | |
| TGGTGATAGGTATCCAATTC+AGG | + | chr2.3:60386937-60386956 | MS.gene74587:CDS | 40.0% | |
| TTCTTTAGCTGCTGTTACTG+AGG | + | chr2.3:60386994-60387013 | MS.gene74587:CDS | 40.0% | |
| ! | AAGGTTCTCAATGGATTCCA+GGG | + | chr2.3:60387194-60387213 | MS.gene74587:CDS | 40.0% |
| ! | GAGGTATCTTTCAATGTTGG+AGG | + | chr2.3:60387013-60387032 | MS.gene74587:CDS | 40.0% |
| ! | GATCTGCCATTGCTATTCTT+GGG | + | chr2.3:60387437-60387456 | MS.gene74587:CDS | 40.0% |
| !! | CCTGCTTTGTTTCACACAAT+AGG | + | chr2.3:60386812-60386831 | MS.gene74587:CDS | 40.0% |
| !!! | GCAATGTTGGTTTTGTGTTG+AGG | + | chr2.3:60387056-60387075 | MS.gene74587:CDS | 40.0% |
| !!! | TGTCTTCGATTTTGGTGTTC+CGG | + | chr2.3:60387386-60387405 | MS.gene74587:CDS | 40.0% |
| AATCCGGTTAGGCCTCTTAA+TGG | + | chr2.3:60387409-60387428 | MS.gene74587:CDS | 45.0% | |
| AGACCATTAAGAGGCCTAAC+CGG | - | chr2.3:60387415-60387434 | None:intergenic | 45.0% | |
| GCAGATCCAAGACCATTAAG+AGG | - | chr2.3:60387424-60387443 | None:intergenic | 45.0% | |
| GTTAGGCCTCTTAATGGTCT+TGG | + | chr2.3:60387415-60387434 | MS.gene74587:CDS | 45.0% | |
| TCAAGCGCCTTATAATACCC+TGG | - | chr2.3:60387214-60387233 | None:intergenic | 45.0% | |
| ! | CCGGTAGCGATTTTTGTAGA+AGG | + | chr2.3:60387175-60387194 | MS.gene74587:CDS | 45.0% |
| ! | GAAGGTTCTCAATGGATTCC+AGG | + | chr2.3:60387193-60387212 | MS.gene74587:CDS | 45.0% |
| ! | GGATCTGCCATTGCTATTCT+TGG | + | chr2.3:60387436-60387455 | MS.gene74587:CDS | 45.0% |
| ! | TATAAGGCGCTTGAAGCGAT+TGG | + | chr2.3:60387220-60387239 | MS.gene74587:CDS | 45.0% |
| !!! | GATTTTGGTGTTCCGGAATC+CGG | + | chr2.3:60387393-60387412 | MS.gene74587:CDS | 45.0% |
| TAAGAGGCCTAACCGGATTC+CGG | - | chr2.3:60387408-60387427 | None:intergenic | 50.0% | |
| TGGTGTTCCGGAATCCGGTT+AGG | + | chr2.3:60387398-60387417 | MS.gene74587:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 60386737 | 60387528 | 60386737 | ID=MS.gene74587 |
| chr2.3 | mRNA | 60386737 | 60387528 | 60386737 | ID=MS.gene74587.t1;Parent=MS.gene74587 |
| chr2.3 | exon | 60386737 | 60387528 | 60386737 | ID=MS.gene74587.t1.exon1;Parent=MS.gene74587.t1 |
| chr2.3 | CDS | 60386737 | 60387528 | 60386737 | ID=cds.MS.gene74587.t1;Parent=MS.gene74587.t1 |
| Gene Sequence |
| Protein sequence |
