Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003136.t1 | XP_003594302.1 | 90 | 341 | 34 | 0 | 1 | 341 | 1 | 341 | 2.70E-118 | 435.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003136.t1 | Q8TBZ6 | 45.5 | 176 | 92 | 3 | 116 | 289 | 103 | 276 | 1.2e-37 | 158.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003136.t1 | G7IQ11 | 90.0 | 341 | 34 | 0 | 1 | 341 | 1 | 341 | 1.9e-118 | 435.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene003136 | MS.gene06380 | PPI |
| MS.gene003136 | MS.gene013296 | PPI |
| MS.gene003136 | MS.gene40912 | PPI |
| MS.gene049266 | MS.gene003136 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003136.t1 | MTR_2g027010 | 94.428 | 341 | 19 | 0 | 1 | 341 | 1 | 341 | 0.0 | 575 |
| MS.gene003136.t1 | MTR_1g032210 | 85.938 | 64 | 9 | 0 | 5 | 68 | 48 | 111 | 2.31e-17 | 77.0 |
| MS.gene003136.t1 | MTR_1g077010 | 89.062 | 64 | 7 | 0 | 5 | 68 | 25 | 88 | 3.99e-13 | 64.7 |
| MS.gene003136.t1 | MTR_4g030780 | 82.812 | 64 | 11 | 0 | 5 | 68 | 149 | 212 | 2.57e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene003136.t1 | AT5G47680 | 66.460 | 322 | 105 | 2 | 12 | 330 | 16 | 337 | 2.27e-133 | 384 |
Find 77 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTGATGGTTCTGGGTT+TGG | 0.219937 | 2.3:-62259519 | None:intergenic |
| CTTGTTAAAGCTAAAGAATT+AGG | 0.221277 | 2.3:+62259795 | MS.gene003136:CDS |
| TAGCTTCTTCTTCGCGTTCT+TGG | 0.225791 | 2.3:-62259556 | None:intergenic |
| AGATACCGGGATTTGATAAA+TGG | 0.257547 | 2.3:+62261183 | MS.gene003136:CDS |
| TTGAACAAGATATATATAAT+TGG | 0.269988 | 2.3:+62261311 | MS.gene003136:CDS |
| CCTGCACATCTTTGGCTAAC+TGG | 0.275764 | 2.3:+62261128 | MS.gene003136:CDS |
| GAAGTGGGTTGTGATGGTTC+TGG | 0.288321 | 2.3:-62259525 | None:intergenic |
| TGGAGGTGGAACTGTGGATT+CGG | 0.300517 | 2.3:-62259499 | None:intergenic |
| TTGAAGCGAGAATGAGTTTA+CGG | 0.339611 | 2.3:+62259721 | MS.gene003136:CDS |
| CAAACAGCTAAACTTCCTAT+TGG | 0.340136 | 2.3:+62261398 | MS.gene003136:CDS |
| AAGTGGGTTGTGATGGTTCT+GGG | 0.356287 | 2.3:-62259524 | None:intergenic |
| TCATCAACAAGTTTGTTAGA+AGG | 0.359781 | 2.3:-62262465 | None:intergenic |
| GTGAAACCCCTGCACATCTT+TGG | 0.363917 | 2.3:+62261120 | MS.gene003136:CDS |
| GTGGATTAGTTGATAGGAAT+AGG | 0.366874 | 2.3:+62261333 | MS.gene003136:CDS |
| GGCAGATCGTAAGGATGATT+TGG | 0.373805 | 2.3:+62261244 | MS.gene003136:CDS |
| CTTGAAGATGTCTAGTTCTC+AGG | 0.377122 | 2.3:+62261427 | MS.gene003136:CDS |
| GTGGATTCGGGTTCGTGGGC+TGG | 0.377972 | 2.3:-62259486 | None:intergenic |
| TAATTGGTGGATTAGTTGAT+AGG | 0.387931 | 2.3:+62261327 | MS.gene003136:CDS |
| TTGTTAAAGCTAAAGAATTA+GGG | 0.401122 | 2.3:+62259796 | MS.gene003136:CDS |
| GGAGGTGGAACTGTGGATTC+GGG | 0.416358 | 2.3:-62259498 | None:intergenic |
| GATGGTTCTGGGTTTGGAGG+TGG | 0.417041 | 2.3:-62259513 | None:intergenic |
| AGAAGGAAACCGAACGGAAA+AGG | 0.417690 | 2.3:+62259643 | MS.gene003136:CDS |
| AATTCGTAGTCTCGTTCAAC+AGG | 0.419056 | 2.3:+62259869 | MS.gene003136:CDS |
| AGAAATACTACTCAAGTTCC+TGG | 0.437281 | 2.3:+62262263 | MS.gene003136:CDS |
| AGAGAAGAAAGCGGCGGCGA+AGG | 0.440968 | 2.3:+62259611 | MS.gene003136:CDS |
| GAACTGTGGATTCGGGTTCG+TGG | 0.452481 | 2.3:-62259491 | None:intergenic |
| AACTGTGGATTCGGGTTCGT+GGG | 0.456447 | 2.3:-62259490 | None:intergenic |
| CATCAACAAGTTTGTTAGAA+GGG | 0.461175 | 2.3:-62262464 | None:intergenic |
| AACAAGATATATATAATTGG+TGG | 0.462299 | 2.3:+62261314 | MS.gene003136:CDS |
| AGCTAGACAAACAACAAAGA+TGG | 0.462734 | 2.3:+62259574 | MS.gene003136:CDS |
| CCAGTTAGCCAAAGATGTGC+AGG | 0.463576 | 2.3:-62261128 | None:intergenic |
| GGAAAGAGAGAATGGAGAAA+AGG | 0.469323 | 2.3:+62259742 | MS.gene003136:CDS |
| TAAGTCTTATATCGAAGTAT+TGG | 0.470291 | 2.3:+62261223 | MS.gene003136:CDS |
| TGTGATGGTTCTGGGTTTGG+AGG | 0.475378 | 2.3:-62259516 | None:intergenic |
| GAGTTTACGGAAAGAGAGAA+TGG | 0.480649 | 2.3:+62259734 | MS.gene003136:CDS |
| CCGAACGGAAAAGGAAGGAA+TGG | 0.480768 | 2.3:+62259652 | MS.gene003136:CDS |
| AGTTGATAGGAATAGGTTCA+AGG | 0.488910 | 2.3:+62261340 | MS.gene003136:CDS |
| CGAAGTATTGGCAGATCGTA+AGG | 0.491306 | 2.3:+62261235 | MS.gene003136:CDS |
| AACTGGCTGCGAAGGAGAGA+TGG | 0.499121 | 2.3:+62261145 | MS.gene003136:CDS |
| AGAAAGTATAGCGGGGATAA+CGG | 0.504106 | 2.3:+62259677 | MS.gene003136:CDS |
| TAGGTTCAAGGGGATAACTA+TGG | 0.506219 | 2.3:+62261352 | MS.gene003136:CDS |
| AGTTCTGAAGTGGGTTGTGA+TGG | 0.510560 | 2.3:-62259531 | None:intergenic |
| ATGTATTGCTATGCGGTGAA+TGG | 0.524164 | 2.3:+62261092 | MS.gene003136:CDS |
| GAATGGGAAGAAAGTATAGC+GGG | 0.525752 | 2.3:+62259669 | MS.gene003136:CDS |
| TTCTTGGAGAGTTCTGAAGT+GGG | 0.527632 | 2.3:-62259540 | None:intergenic |
| AGTTCCTGGAGACAAGGGAT+TGG | 0.534892 | 2.3:+62262277 | MS.gene003136:CDS |
| CGAACGGAAAAGGAAGGAAT+GGG | 0.535470 | 2.3:+62259653 | MS.gene003136:CDS |
| ATCTTCAAGAAATTGCCAAT+AGG | 0.540462 | 2.3:-62261413 | None:intergenic |
| TACTCAAGTTCCTGGAGACA+AGG | 0.542557 | 2.3:+62262271 | MS.gene003136:CDS |
| GTTCTTGGAGAGTTCTGAAG+TGG | 0.543048 | 2.3:-62259541 | None:intergenic |
| CTTTGGCTAACTGGCTGCGA+AGG | 0.546041 | 2.3:+62261137 | MS.gene003136:CDS |
| GCTAGACAAACAACAAAGAT+GGG | 0.546938 | 2.3:+62259575 | MS.gene003136:CDS |
| GTTGATAGGAATAGGTTCAA+GGG | 0.551035 | 2.3:+62261341 | MS.gene003136:CDS |
| TGGGTTTGGAGGTGGAACTG+TGG | 0.555515 | 2.3:-62259505 | None:intergenic |
| AGATCACAAGCTGATTCAGA+AGG | 0.558701 | 2.3:+62262336 | MS.gene003136:CDS |
| AACGGAGGAAGAGAGAGTGA+AGG | 0.562848 | 2.3:+62259695 | MS.gene003136:CDS |
| ATGATCCATTTATCAAATCC+CGG | 0.565613 | 2.3:-62261188 | None:intergenic |
| GGCGAAGGAGAAGAAGAAGA+AGG | 0.568318 | 2.3:+62259626 | MS.gene003136:CDS |
| GTATCTAACGGCTGATTCAG+AGG | 0.575403 | 2.3:+62261268 | MS.gene003136:CDS |
| GGATGATTTGGTGTATCTAA+CGG | 0.578478 | 2.3:+62261256 | MS.gene003136:CDS |
| TTGATAGGAATAGGTTCAAG+GGG | 0.582030 | 2.3:+62261342 | MS.gene003136:CDS |
| TGCAGATAATACTGTAGATG+AGG | 0.589269 | 2.3:+62262362 | MS.gene003136:CDS |
| GGAAACCGAACGGAAAAGGA+AGG | 0.590394 | 2.3:+62259647 | MS.gene003136:CDS |
| AGAAGAAGAAGGAAACCGAA+CGG | 0.602752 | 2.3:+62259637 | MS.gene003136:CDS |
| TGATAAATGGATCATCGAGA+AGG | 0.606007 | 2.3:+62261196 | MS.gene003136:CDS |
| ACGAGACTACGAATTTCTTG+AGG | 0.608427 | 2.3:-62259861 | None:intergenic |
| CAGTTAGCCAAAGATGTGCA+GGG | 0.609008 | 2.3:-62261127 | None:intergenic |
| ATGGAGAAAGCACAAGAGCA+AGG | 0.622205 | 2.3:+62261371 | MS.gene003136:CDS |
| TCTTTGCTGTTATCCCTCAG+AGG | 0.622550 | 2.3:+62262310 | MS.gene003136:CDS |
| ACTCAAGTTCCTGGAGACAA+GGG | 0.624343 | 2.3:+62262272 | MS.gene003136:CDS |
| AAAGAAAGCAGAGAAGAAAG+CGG | 0.626250 | 2.3:+62259602 | MS.gene003136:CDS |
| GAAAGCAGAGAAGAAAGCGG+CGG | 0.640363 | 2.3:+62259605 | MS.gene003136:CDS |
| AGTTAGCCAAAGATGTGCAG+GGG | 0.659607 | 2.3:-62261126 | None:intergenic |
| GGAATGGGAAGAAAGTATAG+CGG | 0.683390 | 2.3:+62259668 | MS.gene003136:CDS |
| AAGTATAGCGGGGATAACGG+AGG | 0.708957 | 2.3:+62259680 | MS.gene003136:CDS |
| AATGGGAAGAAAGTATAGCG+GGG | 0.715050 | 2.3:+62259670 | MS.gene003136:CDS |
| GTAGATAATGTATTGCTATG+CGG | 0.772427 | 2.3:+62261085 | MS.gene003136:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATGAAATTCAAAATT+AGG | - | chr2.3:62260499-62260518 | None:intergenic | 10.0% |
| !! | AAAAATGAAATTCAAAATTA+GGG | - | chr2.3:62260498-62260517 | None:intergenic | 10.0% |
| !!! | AATTAACAAATTTTTTTGAT+GGG | + | chr2.3:62259894-62259913 | MS.gene003136:intron | 10.0% |
| !!! | CATATATTTTTGTTATAAAT+TGG | + | chr2.3:62260788-62260807 | MS.gene003136:intron | 10.0% |
| !!! | TAAATTATTTTGATTTGAAA+TGG | + | chr2.3:62259936-62259955 | MS.gene003136:intron | 10.0% |
| !! | AGTGATTATATTTATATGAA+AGG | + | chr2.3:62259986-62260005 | MS.gene003136:intron | 15.0% |
| !! | ATTATATTTATATGAAAGGT+CGG | + | chr2.3:62259990-62260009 | MS.gene003136:intron | 15.0% |
| !! | TGATCTATGAAATTATAATT+TGG | + | chr2.3:62261862-62261881 | MS.gene003136:intron | 15.0% |
| !! | TTGAACAAGATATATATAAT+TGG | + | chr2.3:62261311-62261330 | MS.gene003136:CDS | 15.0% |
| !!! | ATTTTTGTTATAAATTGGTA+GGG | + | chr2.3:62260793-62260812 | MS.gene003136:intron | 15.0% |
| !!! | CTTATTTTCATTAGTTTATA+TGG | + | chr2.3:62260122-62260141 | MS.gene003136:intron | 15.0% |
| !!! | GAATTAACAAATTTTTTTGA+TGG | + | chr2.3:62259893-62259912 | MS.gene003136:intron | 15.0% |
| !!! | TATTTTTGTTATAAATTGGT+AGG | + | chr2.3:62260792-62260811 | MS.gene003136:intron | 15.0% |
| !! | AACAAGATATATATAATTGG+TGG | + | chr2.3:62261314-62261333 | MS.gene003136:CDS | 20.0% |
| !! | GTACTATGTATAGATTATAT+TGG | + | chr2.3:62261558-62261577 | MS.gene003136:intron | 20.0% |
| !! | TAATCAATTGAAAAAGATAC+CGG | + | chr2.3:62261169-62261188 | MS.gene003136:CDS | 20.0% |
| !! | TTGTTAAAGCTAAAGAATTA+GGG | + | chr2.3:62259796-62259815 | MS.gene003136:CDS | 20.0% |
| !!! | AAAATTTCTATAGTGGATTA+CGG | - | chr2.3:62260564-62260583 | None:intergenic | 20.0% |
| !!! | AAGTTTGTATTTTGTATCAT+TGG | + | chr2.3:62261524-62261543 | MS.gene003136:intron | 20.0% |
| !!! | ACTTGATAACACTTAAAAAT+GGG | + | chr2.3:62262167-62262186 | MS.gene003136:intron | 20.0% |
| !!! | CTATATTTTTGAATGTGTAT+TGG | + | chr2.3:62260918-62260937 | MS.gene003136:intron | 20.0% |
| !!! | TAATATTTCTTGTTGTGTAT+TGG | + | chr2.3:62261035-62261054 | MS.gene003136:intron | 20.0% |
| !!! | TACTTGATAACACTTAAAAA+TGG | + | chr2.3:62262166-62262185 | MS.gene003136:intron | 20.0% |
| ! | AAGTAAAAAGAAATGTGTTG+AGG | + | chr2.3:62262437-62262456 | MS.gene003136:CDS | 25.0% |
| ! | AATCAATTGAAAAAGATACC+GGG | + | chr2.3:62261170-62261189 | MS.gene003136:CDS | 25.0% |
| ! | CGATATATGTTTAGATAAGA+CGG | + | chr2.3:62260958-62260977 | MS.gene003136:intron | 25.0% |
| ! | CTTGTTAAAGCTAAAGAATT+AGG | + | chr2.3:62259795-62259814 | MS.gene003136:CDS | 25.0% |
| ! | GAACTCAAAAATTTCTATAG+TGG | - | chr2.3:62260571-62260590 | None:intergenic | 25.0% |
| ! | TATATGAGAAACATCCAAAT+TGG | - | chr2.3:62260774-62260793 | None:intergenic | 25.0% |
| !! | ATTGCTGATCTTCAATTTTA+TGG | + | chr2.3:62262084-62262103 | MS.gene003136:intron | 25.0% |
| !! | TAAGTCTTATATCGAAGTAT+TGG | + | chr2.3:62261223-62261242 | MS.gene003136:CDS | 25.0% |
| !! | TGTATTGGTAAATGATAGAA+TGG | + | chr2.3:62260933-62260952 | MS.gene003136:intron | 25.0% |
| !! | TTTTACAATCTCAACCAATT+TGG | + | chr2.3:62260757-62260776 | MS.gene003136:intron | 25.0% |
| !!! | AAATTTCTATAGTGGATTAC+GGG | - | chr2.3:62260563-62260582 | None:intergenic | 25.0% |
| !!! | TCTATCACATTAGTCTTTTT+TGG | + | chr2.3:62261885-62261904 | MS.gene003136:intron | 25.0% |
| !!! | TGGGTTTTTTAGATTGTTTA+CGG | + | chr2.3:62259913-62259932 | MS.gene003136:intron | 25.0% |
| AAACATTTGTGAGACTGTTT+AGG | + | chr2.3:62260048-62260067 | MS.gene003136:intron | 30.0% | |
| AAATGTCTTAGACACACAAA+TGG | - | chr2.3:62262198-62262217 | None:intergenic | 30.0% | |
| AATGTAAAAGAATCTACCGA+TGG | - | chr2.3:62261743-62261762 | None:intergenic | 30.0% | |
| ACCATTTAGCTGAAATTACT+GGG | + | chr2.3:62261799-62261818 | MS.gene003136:intron | 30.0% | |
| AGAAAAATGAGAAGAAAGAG+AGG | + | chr2.3:62259772-62259791 | MS.gene003136:CDS | 30.0% | |
| ATCTTCAAGAAATTGCCAAT+AGG | - | chr2.3:62261416-62261435 | None:intergenic | 30.0% | |
| ATGATCCATTTATCAAATCC+CGG | - | chr2.3:62261191-62261210 | None:intergenic | 30.0% | |
| ATGGAGATTACTTTGCTAAT+AGG | + | chr2.3:62259955-62259974 | MS.gene003136:intron | 30.0% | |
| ATTCAGTCCTACATCTATAA+AGG | - | chr2.3:62262022-62262041 | None:intergenic | 30.0% | |
| ATTTATATGAAAGGTCGGTT+TGG | + | chr2.3:62259995-62260014 | MS.gene003136:intron | 30.0% | |
| CAAAAGAGAGAGAGAAAAAA+TGG | + | chr2.3:62261680-62261699 | MS.gene003136:intron | 30.0% | |
| GTAGATAATGTATTGCTATG+CGG | + | chr2.3:62261085-62261104 | MS.gene003136:intron | 30.0% | |
| TAAATCACCAACTTAGTCTA+GGG | - | chr2.3:62262148-62262167 | None:intergenic | 30.0% | |
| TAAATTTCCCTAGACTAAGT+TGG | + | chr2.3:62262138-62262157 | MS.gene003136:intron | 30.0% | |
| TATTTCTCATTTGAGCTTTC+AGG | + | chr2.3:62262218-62262237 | MS.gene003136:intron | 30.0% | |
| TGAAGAAAAAGATGATCTAC+TGG | + | chr2.3:62262413-62262432 | MS.gene003136:CDS | 30.0% | |
| TGTAAATTAAGCTGTGAACA+AGG | + | chr2.3:62260229-62260248 | MS.gene003136:intron | 30.0% | |
| TTATAGATGTAGGACTGAAT+TGG | + | chr2.3:62262022-62262041 | MS.gene003136:intron | 30.0% | |
| TTCAGTCCTACATCTATAAA+GGG | - | chr2.3:62262021-62262040 | None:intergenic | 30.0% | |
| TTGTCAATAGCACACTATAA+CGG | + | chr2.3:62260297-62260316 | MS.gene003136:intron | 30.0% | |
| ! | ATGTATTTGATAACAGAGTC+AGG | + | chr2.3:62260651-62260670 | MS.gene003136:intron | 30.0% |
| ! | TACAAACTTTTAGCAGTCAA+AGG | - | chr2.3:62261513-62261532 | None:intergenic | 30.0% |
| ! | TGTATTGGTAAATGATGGAA+TGG | + | chr2.3:62261050-62261069 | MS.gene003136:intron | 30.0% |
| ! | TGTTGTGTATTGGTAAATGA+TGG | + | chr2.3:62261045-62261064 | MS.gene003136:intron | 30.0% |
| !! | CATCAACAAGTTTGTTAGAA+GGG | - | chr2.3:62262467-62262486 | None:intergenic | 30.0% |
| !! | TAATTGGTGGATTAGTTGAT+AGG | + | chr2.3:62261327-62261346 | MS.gene003136:CDS | 30.0% |
| !! | TCATCAACAAGTTTGTTAGA+AGG | - | chr2.3:62262468-62262487 | None:intergenic | 30.0% |
| AAAGAAAGCAGAGAAGAAAG+CGG | + | chr2.3:62259602-62259621 | MS.gene003136:CDS | 35.0% | |
| AACCCTCTTGTATTTGCTTT+GGG | + | chr2.3:62261472-62261491 | MS.gene003136:intron | 35.0% | |
| AAGAGAGAGAGAAAAAATGG+AGG | + | chr2.3:62261683-62261702 | MS.gene003136:intron | 35.0% | |
| AGAAATACTACTCAAGTTCC+TGG | + | chr2.3:62262263-62262282 | MS.gene003136:CDS | 35.0% | |
| AGAGACGATTGAGAGAAAAT+AGG | + | chr2.3:62261638-62261657 | MS.gene003136:intron | 35.0% | |
| AGAGAGAGAGAAAAAATGGA+GGG | + | chr2.3:62261684-62261703 | MS.gene003136:intron | 35.0% | |
| AGATACCGGGATTTGATAAA+TGG | + | chr2.3:62261183-62261202 | MS.gene003136:CDS | 35.0% | |
| AGCTAGACAAACAACAAAGA+TGG | + | chr2.3:62259574-62259593 | MS.gene003136:CDS | 35.0% | |
| ATGTGTCAAAGTGACTAATG+TGG | + | chr2.3:62261930-62261949 | MS.gene003136:intron | 35.0% | |
| CAAACAGCTAAACTTCCTAT+TGG | + | chr2.3:62261398-62261417 | MS.gene003136:CDS | 35.0% | |
| CACCATTTAGCTGAAATTAC+TGG | + | chr2.3:62261798-62261817 | MS.gene003136:intron | 35.0% | |
| CCATTTAGCTGAAATTACTG+GGG | + | chr2.3:62261800-62261819 | MS.gene003136:intron | 35.0% | |
| GAGACGATTGAGAGAAAATA+GGG | + | chr2.3:62261639-62261658 | MS.gene003136:intron | 35.0% | |
| GCTAGACAAACAACAAAGAT+GGG | + | chr2.3:62259575-62259594 | MS.gene003136:CDS | 35.0% | |
| GTAAATCACCAACTTAGTCT+AGG | - | chr2.3:62262149-62262168 | None:intergenic | 35.0% | |
| TAACCCTCTTGTATTTGCTT+TGG | + | chr2.3:62261471-62261490 | MS.gene003136:intron | 35.0% | |
| TGATAAATGGATCATCGAGA+AGG | + | chr2.3:62261196-62261215 | MS.gene003136:CDS | 35.0% | |
| TGCAGATAATACTGTAGATG+AGG | + | chr2.3:62262362-62262381 | MS.gene003136:CDS | 35.0% | |
| TTGAAGATCAGCAATCACAT+TGG | - | chr2.3:62262079-62262098 | None:intergenic | 35.0% | |
| TTGAAGCGAGAATGAGTTTA+CGG | + | chr2.3:62259721-62259740 | MS.gene003136:CDS | 35.0% | |
| TTGATAGGAATAGGTTCAAG+GGG | + | chr2.3:62261342-62261361 | MS.gene003136:CDS | 35.0% | |
| ! | GTTGATAGGAATAGGTTCAA+GGG | + | chr2.3:62261341-62261360 | MS.gene003136:CDS | 35.0% |
| !! | AGTTGATAGGAATAGGTTCA+AGG | + | chr2.3:62261340-62261359 | MS.gene003136:CDS | 35.0% |
| !! | GGATGATTTGGTGTATCTAA+CGG | + | chr2.3:62261256-62261275 | MS.gene003136:CDS | 35.0% |
| !! | GTGGATTAGTTGATAGGAAT+AGG | + | chr2.3:62261333-62261352 | MS.gene003136:CDS | 35.0% |
| AAAGAATCTACCGATGGATC+CGG | - | chr2.3:62261737-62261756 | None:intergenic | 40.0% | |
| AATTCGTAGTCTCGTTCAAC+AGG | + | chr2.3:62259869-62259888 | MS.gene003136:CDS | 40.0% | |
| ACGAGACTACGAATTTCTTG+AGG | - | chr2.3:62259864-62259883 | None:intergenic | 40.0% | |
| AGAAGAAGAAGGAAACCGAA+CGG | + | chr2.3:62259637-62259656 | MS.gene003136:CDS | 40.0% | |
| AGAGAGAGAAAAAATGGAGG+GGG | + | chr2.3:62261686-62261705 | MS.gene003136:intron | 40.0% | |
| AGCCCAAAGCAAATACAAGA+GGG | - | chr2.3:62261477-62261496 | None:intergenic | 40.0% | |
| ATGTATTGCTATGCGGTGAA+TGG | + | chr2.3:62261092-62261111 | MS.gene003136:CDS | 40.0% | |
| ATTGGATCATCTTCTGCAAG+TGG | + | chr2.3:62261576-62261595 | MS.gene003136:intron | 40.0% | |
| CACTATAAGTGGTTGAAGAG+CGG | + | chr2.3:62260396-62260415 | MS.gene003136:intron | 40.0% | |
| CCCCAGTAATTTCAGCTAAA+TGG | - | chr2.3:62261803-62261822 | None:intergenic | 40.0% | |
| CTATAAAGGGTCGCTCAATT+TGG | - | chr2.3:62262008-62262027 | None:intergenic | 40.0% | |
| GAGAGAGAGAAAAAATGGAG+GGG | + | chr2.3:62261685-62261704 | MS.gene003136:intron | 40.0% | |
| GAGTTTACGGAAAGAGAGAA+TGG | + | chr2.3:62259734-62259753 | MS.gene003136:CDS | 40.0% | |
| GCAACCAACATTCTCAACTT+AGG | - | chr2.3:62260255-62260274 | None:intergenic | 40.0% | |
| GGAAAGAGAGAATGGAGAAA+AGG | + | chr2.3:62259742-62259761 | MS.gene003136:CDS | 40.0% | |
| TAGGTTCAAGGGGATAACTA+TGG | + | chr2.3:62261352-62261371 | MS.gene003136:CDS | 40.0% | |
| TGGCTGCTATTGCAAACTTT+GGG | + | chr2.3:62260457-62260476 | MS.gene003136:intron | 40.0% | |
| ! | AAGGCCTAAGTTGAGAATGT+TGG | + | chr2.3:62260248-62260267 | MS.gene003136:intron | 40.0% |
| ! | AATGGGAAGAAAGTATAGCG+GGG | + | chr2.3:62259670-62259689 | MS.gene003136:CDS | 40.0% |
| ! | AGAAAGTATAGCGGGGATAA+CGG | + | chr2.3:62259677-62259696 | MS.gene003136:CDS | 40.0% |
| ! | AGATCACAAGCTGATTCAGA+AGG | + | chr2.3:62262336-62262355 | MS.gene003136:CDS | 40.0% |
| ! | CTTGTGATCTTTTCCTCTGA+GGG | - | chr2.3:62262326-62262345 | None:intergenic | 40.0% |
| ! | GAATGGGAAGAAAGTATAGC+GGG | + | chr2.3:62259669-62259688 | MS.gene003136:CDS | 40.0% |
| ! | GGAATGGGAAGAAAGTATAG+CGG | + | chr2.3:62259668-62259687 | MS.gene003136:CDS | 40.0% |
| !! | CTTGAAGATGTCTAGTTCTC+AGG | + | chr2.3:62261427-62261446 | MS.gene003136:CDS | 40.0% |
| !! | TTCTTGGAGAGTTCTGAAGT+GGG | - | chr2.3:62259543-62259562 | None:intergenic | 40.0% |
| AACAGAGTCAGGCAAAGCAA+AGG | + | chr2.3:62260662-62260681 | MS.gene003136:intron | 45.0% | |
| ACTCAAGTTCCTGGAGACAA+GGG | + | chr2.3:62262272-62262291 | MS.gene003136:CDS | 45.0% | |
| ACTGTTGCTGCTACTCTCAA+TGG | - | chr2.3:62260373-62260392 | None:intergenic | 45.0% | |
| AGAAGGAAACCGAACGGAAA+AGG | + | chr2.3:62259643-62259662 | MS.gene003136:CDS | 45.0% | |
| AGTTAGCCAAAGATGTGCAG+GGG | - | chr2.3:62261129-62261148 | None:intergenic | 45.0% | |
| ATCCCACTACTATAGCGGTT+TGG | + | chr2.3:62260434-62260453 | MS.gene003136:intron | 45.0% | |
| ATTGAGAGTAGCAGCAACAG+TGG | + | chr2.3:62260372-62260391 | MS.gene003136:intron | 45.0% | |
| CACCAAACCGCTATAGTAGT+GGG | - | chr2.3:62260439-62260458 | None:intergenic | 45.0% | |
| CAGCCCAAAGCAAATACAAG+AGG | - | chr2.3:62261478-62261497 | None:intergenic | 45.0% | |
| CAGTTAGCCAAAGATGTGCA+GGG | - | chr2.3:62261130-62261149 | None:intergenic | 45.0% | |
| CGAACGGAAAAGGAAGGAAT+GGG | + | chr2.3:62259653-62259672 | MS.gene003136:CDS | 45.0% | |
| CGCTCTTCAACCACTTATAG+TGG | - | chr2.3:62260398-62260417 | None:intergenic | 45.0% | |
| GAGAGAGAAAAAATGGAGGG+GGG | + | chr2.3:62261687-62261706 | MS.gene003136:intron | 45.0% | |
| GAGCGACCCTTTATAGATGT+AGG | + | chr2.3:62262012-62262031 | MS.gene003136:intron | 45.0% | |
| GCGTAATCCCACTACTATAG+CGG | + | chr2.3:62260429-62260448 | MS.gene003136:intron | 45.0% | |
| GGCAGATCGTAAGGATGATT+TGG | + | chr2.3:62261244-62261263 | MS.gene003136:CDS | 45.0% | |
| GGCTGCTATTGCAAACTTTG+GGG | + | chr2.3:62260458-62260477 | MS.gene003136:intron | 45.0% | |
| GGTTGGAGAGTGATCCTATA+GGG | + | chr2.3:62261708-62261727 | MS.gene003136:intron | 45.0% | |
| GTGGCTGCTATTGCAAACTT+TGG | + | chr2.3:62260456-62260475 | MS.gene003136:intron | 45.0% | |
| GTTGGAGAGTGATCCTATAG+GGG | + | chr2.3:62261709-62261728 | MS.gene003136:intron | 45.0% | |
| TACTCAAGTTCCTGGAGACA+AGG | + | chr2.3:62262271-62262290 | MS.gene003136:CDS | 45.0% | |
| TAGCTTCTTCTTCGCGTTCT+TGG | - | chr2.3:62259559-62259578 | None:intergenic | 45.0% | |
| ! | ATGGAGAAAGCACAAGAGCA+AGG | + | chr2.3:62261371-62261390 | MS.gene003136:CDS | 45.0% |
| ! | CCATTCCTTCCTTTTCCGTT+CGG | - | chr2.3:62259655-62259674 | None:intergenic | 45.0% |
| ! | GCTTGTGATCTTTTCCTCTG+AGG | - | chr2.3:62262327-62262346 | None:intergenic | 45.0% |
| ! | GTATCTAACGGCTGATTCAG+AGG | + | chr2.3:62261268-62261287 | MS.gene003136:CDS | 45.0% |
| ! | TTTTCCAATCCCTTGTCTCC+AGG | - | chr2.3:62262284-62262303 | None:intergenic | 45.0% |
| !! | AAGTGGGTTGTGATGGTTCT+GGG | - | chr2.3:62259527-62259546 | None:intergenic | 45.0% |
| !! | AGTTCTGAAGTGGGTTGTGA+TGG | - | chr2.3:62259534-62259553 | None:intergenic | 45.0% |
| !! | CGAAGTATTGGCAGATCGTA+AGG | + | chr2.3:62261235-62261254 | MS.gene003136:CDS | 45.0% |
| !! | GTTCTTGGAGAGTTCTGAAG+TGG | - | chr2.3:62259544-62259563 | None:intergenic | 45.0% |
| !! | TCTTTGCTGTTATCCCTCAG+AGG | + | chr2.3:62262310-62262329 | MS.gene003136:CDS | 45.0% |
| AACGGAGGAAGAGAGAGTGA+AGG | + | chr2.3:62259695-62259714 | MS.gene003136:CDS | 50.0% | |
| ACTTGTGTTTCCAGCTGCAG+TGG | - | chr2.3:62261610-62261629 | None:intergenic | 50.0% | |
| AGTTCCTGGAGACAAGGGAT+TGG | + | chr2.3:62262277-62262296 | MS.gene003136:CDS | 50.0% | |
| CACACTATAACGGTGTAGCG+TGG | + | chr2.3:62260307-62260326 | MS.gene003136:intron | 50.0% | |
| CCACCAAACCGCTATAGTAG+TGG | - | chr2.3:62260440-62260459 | None:intergenic | 50.0% | |
| CCAGTTAGCCAAAGATGTGC+AGG | - | chr2.3:62261131-62261150 | None:intergenic | 50.0% | |
| CCGAACGGAAAAGGAAGGAA+TGG | + | chr2.3:62259652-62259671 | MS.gene003136:CDS | 50.0% | |
| CCTGCACATCTTTGGCTAAC+TGG | + | chr2.3:62261128-62261147 | MS.gene003136:CDS | 50.0% | |
| CTACTCTCAATGGCACTTCG+CGG | - | chr2.3:62260363-62260382 | None:intergenic | 50.0% | |
| GAAAGCAGAGAAGAAAGCGG+CGG | + | chr2.3:62259605-62259624 | MS.gene003136:CDS | 50.0% | |
| GAGAAAAAATGGAGGGGGGT+TGG | + | chr2.3:62261691-62261710 | MS.gene003136:intron | 50.0% | |
| GAGTGATCCTATAGGGGATC+CGG | + | chr2.3:62261715-62261734 | MS.gene003136:intron | 50.0% | |
| GCAACAGTGGCCACTATAAG+TGG | + | chr2.3:62260385-62260404 | MS.gene003136:intron | 50.0% | |
| GGAAACCGAACGGAAAAGGA+AGG | + | chr2.3:62259647-62259666 | MS.gene003136:CDS | 50.0% | |
| GGCGAAGGAGAAGAAGAAGA+AGG | + | chr2.3:62259626-62259645 | MS.gene003136:CDS | 50.0% | |
| GGGTTGGAGAGTGATCCTAT+AGG | + | chr2.3:62261707-62261726 | MS.gene003136:intron | 50.0% | |
| GTCAGGCAAAGCAAAGGACT+TGG | + | chr2.3:62260668-62260687 | MS.gene003136:intron | 50.0% | |
| GTGAAACCCCTGCACATCTT+TGG | + | chr2.3:62261120-62261139 | MS.gene003136:CDS | 50.0% | |
| TACTCTCAATGGCACTTCGC+GGG | - | chr2.3:62260362-62260381 | None:intergenic | 50.0% | |
| TATAGGGGATCCGGATCCAT+CGG | + | chr2.3:62261724-62261743 | MS.gene003136:intron | 50.0% | |
| TGGAGGTGGAACTGTGGATT+CGG | - | chr2.3:62259502-62259521 | None:intergenic | 50.0% | |
| ! | AACTGTGGATTCGGGTTCGT+GGG | - | chr2.3:62259493-62259512 | None:intergenic | 50.0% |
| ! | AAGTATAGCGGGGATAACGG+AGG | + | chr2.3:62259680-62259699 | MS.gene003136:CDS | 50.0% |
| ! | CCACTACTATAGCGGTTTGG+TGG | + | chr2.3:62260437-62260456 | MS.gene003136:intron | 50.0% |
| !! | GAAGTGGGTTGTGATGGTTC+TGG | - | chr2.3:62259528-62259547 | None:intergenic | 50.0% |
| !! | GGTTGTGATGGTTCTGGGTT+TGG | - | chr2.3:62259522-62259541 | None:intergenic | 50.0% |
| !! | GTTGAAGAGCGGTGCTATCA+AGG | + | chr2.3:62260407-62260426 | MS.gene003136:intron | 50.0% |
| !! | TGTGATGGTTCTGGGTTTGG+AGG | - | chr2.3:62259519-62259538 | None:intergenic | 50.0% |
| AACTGGCTGCGAAGGAGAGA+TGG | + | chr2.3:62261145-62261164 | MS.gene003136:CDS | 55.0% | |
| AATGGCACTTCGCGGGACTA+TGG | - | chr2.3:62260355-62260374 | None:intergenic | 55.0% | |
| CTTTGGCTAACTGGCTGCGA+AGG | + | chr2.3:62261137-62261156 | MS.gene003136:CDS | 55.0% | |
| GATGGATCCGGATCCCCTAT+AGG | - | chr2.3:62261725-62261744 | None:intergenic | 55.0% | |
| GGACTATGGCGTAGTAGTGG+AGG | - | chr2.3:62260341-62260360 | None:intergenic | 55.0% | |
| GGAGGTGGAACTGTGGATTC+GGG | - | chr2.3:62259501-62259520 | None:intergenic | 55.0% | |
| TGGGTTTGGAGGTGGAACTG+TGG | - | chr2.3:62259508-62259527 | None:intergenic | 55.0% | |
| ! | GAACTGTGGATTCGGGTTCG+TGG | - | chr2.3:62259494-62259513 | None:intergenic | 55.0% |
| !! | GATGGTTCTGGGTTTGGAGG+TGG | - | chr2.3:62259516-62259535 | None:intergenic | 55.0% |
| AACGGTGTAGCGTGGCAGTG+CGG | + | chr2.3:62260315-62260334 | MS.gene003136:intron | 60.0% | |
| AGAGAAGAAAGCGGCGGCGA+AGG | + | chr2.3:62259611-62259630 | MS.gene003136:CDS | 60.0% | |
| GCGGGACTATGGCGTAGTAG+TGG | - | chr2.3:62260344-62260363 | None:intergenic | 60.0% | |
| !! | GGAAGTGCTTCCACTGCAGC+TGG | + | chr2.3:62261597-62261616 | MS.gene003136:intron | 60.0% |
| ! | GTGGATTCGGGTTCGTGGGC+TGG | - | chr2.3:62259489-62259508 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 62259480 | 62262494 | 62259480 | ID=MS.gene003136 |
| chr2.3 | mRNA | 62259480 | 62262494 | 62259480 | ID=MS.gene003136.t1;Parent=MS.gene003136 |
| chr2.3 | exon | 62259480 | 62259890 | 62259480 | ID=MS.gene003136.t1.exon1;Parent=MS.gene003136.t1 |
| chr2.3 | CDS | 62259480 | 62259890 | 62259480 | ID=cds.MS.gene003136.t1;Parent=MS.gene003136.t1 |
| chr2.3 | exon | 62261089 | 62261448 | 62261089 | ID=MS.gene003136.t1.exon2;Parent=MS.gene003136.t1 |
| chr2.3 | CDS | 62261089 | 62261448 | 62261089 | ID=cds.MS.gene003136.t1;Parent=MS.gene003136.t1 |
| chr2.3 | exon | 62262240 | 62262494 | 62262240 | ID=MS.gene003136.t1.exon3;Parent=MS.gene003136.t1 |
| chr2.3 | CDS | 62262240 | 62262494 | 62262240 | ID=cds.MS.gene003136.t1;Parent=MS.gene003136.t1 |
| Gene Sequence |
| Protein sequence |
