Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013296.t1 | XP_013461571.1 | 98.2 | 1086 | 19 | 1 | 1 | 1085 | 1 | 1086 | 0.00E+00 | 2058.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013296.t1 | Q9LRE6 | 83.4 | 1034 | 167 | 4 | 55 | 1085 | 74 | 1105 | 0.0e+00 | 1753.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013296.t1 | A0A072V1N5 | 98.2 | 1086 | 19 | 1 | 1 | 1085 | 1 | 1086 | 0.0e+00 | 2058.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013296.t1 | MTR_3g096525 | 98.066 | 1086 | 20 | 1 | 1 | 1085 | 1 | 1086 | 0.0 | 2215 |
| MS.gene013296.t1 | MTR_7g113380 | 28.788 | 858 | 515 | 20 | 297 | 1076 | 727 | 1566 | 8.81e-92 | 323 |
| MS.gene013296.t1 | MTR_7g113380 | 28.788 | 858 | 515 | 20 | 297 | 1076 | 1067 | 1906 | 8.84e-92 | 324 |
| MS.gene013296.t1 | MTR_7g113380 | 28.788 | 858 | 515 | 20 | 297 | 1076 | 958 | 1797 | 1.92e-91 | 323 |
| MS.gene013296.t1 | MTR_5g017070 | 25.836 | 658 | 401 | 14 | 370 | 967 | 658 | 1288 | 2.94e-48 | 188 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013296.t1 | AT5G63960 | 81.215 | 1070 | 193 | 5 | 19 | 1085 | 31 | 1095 | 0.0 | 1824 |
| MS.gene013296.t1 | AT5G63960 | 79.945 | 1087 | 193 | 6 | 19 | 1085 | 31 | 1112 | 0.0 | 1813 |
| MS.gene013296.t1 | AT1G67500 | 28.571 | 847 | 523 | 19 | 297 | 1073 | 1060 | 1894 | 4.03e-87 | 310 |
| MS.gene013296.t1 | AT1G67500 | 28.571 | 847 | 523 | 19 | 297 | 1073 | 1060 | 1894 | 4.03e-87 | 310 |
| MS.gene013296.t1 | AT1G67500 | 28.571 | 847 | 523 | 19 | 297 | 1073 | 1035 | 1869 | 4.24e-87 | 310 |
| MS.gene013296.t1 | AT1G67500 | 28.571 | 847 | 523 | 19 | 297 | 1073 | 1034 | 1868 | 4.47e-87 | 310 |
| MS.gene013296.t1 | AT1G67500 | 28.571 | 847 | 523 | 19 | 297 | 1073 | 1034 | 1868 | 4.47e-87 | 310 |
| MS.gene013296.t1 | AT1G67500 | 28.571 | 847 | 523 | 19 | 297 | 1073 | 1035 | 1869 | 4.68e-87 | 310 |
| MS.gene013296.t1 | AT1G67500 | 29.568 | 602 | 358 | 13 | 297 | 843 | 1034 | 1624 | 3.62e-64 | 239 |
| MS.gene013296.t1 | AT5G67100 | 26.254 | 678 | 410 | 17 | 350 | 967 | 639 | 1286 | 4.48e-50 | 194 |
| MS.gene013296.t1 | AT5G67100 | 26.254 | 678 | 410 | 17 | 350 | 967 | 639 | 1286 | 4.48e-50 | 194 |
| MS.gene013296.t1 | AT1G49180 | 44.865 | 185 | 44 | 4 | 367 | 551 | 228 | 354 | 3.95e-32 | 130 |
| MS.gene013296.t1 | AT1G49180 | 37.339 | 233 | 84 | 5 | 367 | 599 | 228 | 398 | 6.10e-32 | 130 |
Find 235 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGCTATAATTCGAATATT+TGG | 0.102002 | 3.4:-87399713 | MS.gene013296:CDS |
| GATAGCAGAATTTCCAATTC+TGG | 0.170007 | 3.4:-87397690 | MS.gene013296:CDS |
| GTAGACCCTGATATTATTAT+TGG | 0.191827 | 3.4:-87397916 | MS.gene013296:CDS |
| ATTAGTGCAAATTCTGTATA+TGG | 0.197387 | 3.4:-87392382 | MS.gene013296:CDS |
| TTGGAAATTCTGCTATCTTT+AGG | 0.200825 | 3.4:+87397696 | None:intergenic |
| GCAACATAGTTGGTGGAAAT+TGG | 0.209549 | 3.4:-87398817 | MS.gene013296:CDS |
| ATTCTTCGTCTTCAGAAATT+AGG | 0.209852 | 3.4:+87400064 | None:intergenic |
| CAATTTCCTTTCTACTTTCC+AGG | 0.212135 | 3.4:-87395259 | MS.gene013296:CDS |
| AGCTATTAGCAGCCCGTAAA+AGG | 0.213792 | 3.4:-87392774 | MS.gene013296:CDS |
| GAGAAGTTTACAACAGTTAA+TGG | 0.232406 | 3.4:-87392148 | MS.gene013296:CDS |
| CTGCTATAATTCGAATATTT+GGG | 0.241409 | 3.4:-87399712 | MS.gene013296:CDS |
| AATTCTGTATATGGGTTTAC+AGG | 0.245992 | 3.4:-87392373 | MS.gene013296:CDS |
| GTAAAAGATGCTATGGATTT+GGG | 0.248306 | 3.4:-87391610 | MS.gene013296:CDS |
| TTGTACATTGCTGTTTCTAT+TGG | 0.255779 | 3.4:+87399360 | None:intergenic |
| TCTTGCTGTTAGGTAATATA+TGG | 0.257975 | 3.4:-87391673 | MS.gene013296:intron |
| AAGATAGTATTGAGGATCTA+TGG | 0.259016 | 3.4:+87389246 | None:intergenic |
| CCGTATAGATTTATCACTTC+TGG | 0.259427 | 3.4:-87391101 | MS.gene013296:CDS |
| AGGTGCTTTCTCAACTTCTT+AGG | 0.266272 | 3.4:-87395125 | MS.gene013296:CDS |
| TTTCTTACAGATTGCTAATC+TGG | 0.268836 | 3.4:-87398404 | MS.gene013296:intron |
| TGGAAATTCTGCTATCTTTA+GGG | 0.269102 | 3.4:+87397697 | None:intergenic |
| TGTAAAAGATGCTATGGATT+TGG | 0.269167 | 3.4:-87391611 | MS.gene013296:CDS |
| AATAGCTCTTCAAGTATTTC+CGG | 0.270000 | 3.4:+87392790 | None:intergenic |
| CGTCGATGAACTCTTCTTCC+TGG | 0.276486 | 3.4:+87400109 | None:intergenic |
| CATATCTCTTCTTGCTAATC+AGG | 0.282777 | 3.4:+87391384 | None:intergenic |
| AGAGATATGCTGGTTTGTTT+TGG | 0.286950 | 3.4:-87391370 | MS.gene013296:CDS |
| CTGGAAAGTAGAAAGGAAAT+TGG | 0.290652 | 3.4:+87395260 | None:intergenic |
| CCTTGCTGTGTATTGCTTGA+AGG | 0.296468 | 3.4:-87396591 | MS.gene013296:intron |
| TGAAAAGCCAATTGCTACTT+TGG | 0.297222 | 3.4:-87393223 | MS.gene013296:CDS |
| TTCCAATTCTGGGCCGTATC+AGG | 0.298766 | 3.4:-87397679 | MS.gene013296:CDS |
| TTGCTAGCATTCTTTAGAAT+TGG | 0.313137 | 3.4:+87389115 | None:intergenic |
| TCATGTTGCAGCCAATTCTA+AGG | 0.316031 | 3.4:-87389147 | MS.gene013296:intron |
| TTATATCCAATAATAATATC+AGG | 0.316975 | 3.4:+87397910 | None:intergenic |
| CTCGAGTACTTTCTGAAAAC+TGG | 0.317884 | 3.4:+87399510 | None:intergenic |
| GTCATCACGTTACGAATTAA+TGG | 0.320631 | 3.4:+87398358 | None:intergenic |
| AGTAAAGAAGTCACCGTAGA+AGG | 0.323914 | 3.4:-87397357 | MS.gene013296:CDS |
| AACTCATGTTCCCCTATTGT+TGG | 0.329499 | 3.4:-87398331 | MS.gene013296:CDS |
| GATTCAGTCATGGTACAATT+TGG | 0.334651 | 3.4:-87391643 | MS.gene013296:CDS |
| TGATATTACCTTGGCACCTT+TGG | 0.335135 | 3.4:+87389405 | None:intergenic |
| AATGCAAGTATACTGCTTCT+TGG | 0.342893 | 3.4:+87389018 | None:intergenic |
| AAGGGCAAAAGCAGACTTAA+AGG | 0.343855 | 3.4:-87392755 | MS.gene013296:intron |
| GACCCTGCCTGCTTGGCATT+AGG | 0.345480 | 3.4:+87395075 | None:intergenic |
| TTACAACTTGCAGGTATTAG+AGG | 0.347551 | 3.4:-87393262 | MS.gene013296:intron |
| GAACCTGGAGCAGATCAAAT+TGG | 0.355046 | 3.4:+87397328 | None:intergenic |
| GGGCAGTTGATGTAGAAATA+TGG | 0.361612 | 3.4:+87399559 | None:intergenic |
| TGGGACGCTGCATGCTTTGA+CGG | 0.362669 | 3.4:+87400129 | None:intergenic |
| CAATTTATCCAAAAGTCGTT+GGG | 0.369334 | 3.4:+87395328 | None:intergenic |
| TTCTCAAATTCTAGTTTGAT+AGG | 0.370844 | 3.4:+87391425 | None:intergenic |
| ACAAGCAATCAAACTCTAAC+TGG | 0.379300 | 3.4:+87398741 | None:intergenic |
| TTCTACATCAACTGCCCTCC+TGG | 0.388346 | 3.4:-87399553 | MS.gene013296:CDS |
| ATCCTTGAATACTCCCCTTC+TGG | 0.389244 | 3.4:+87398594 | None:intergenic |
| AGCGGAGAGTCATGACAAAA+TGG | 0.389708 | 3.4:-87391342 | MS.gene013296:CDS |
| CTGGAGATTGATTATGTGAT+TGG | 0.389798 | 3.4:-87399776 | MS.gene013296:CDS |
| GTGGAAATGGCTCGTGTAAC+AGG | 0.390234 | 3.4:-87395287 | MS.gene013296:CDS |
| TTCCTGATACGGCCCAGAAT+TGG | 0.391739 | 3.4:+87397677 | None:intergenic |
| CGCTGGACGCTTGCGTGAGT+TGG | 0.393185 | 3.4:+87400173 | None:intergenic |
| TCACATCAACACCAACAATA+GGG | 0.395061 | 3.4:+87398320 | None:intergenic |
| TACCTTGATGCTCTGGCCCC+TGG | 0.396269 | 3.4:+87395241 | None:intergenic |
| CAAGGTTGCAATTGGATAGA+TGG | 0.398012 | 3.4:-87387142 | MS.gene013296:CDS |
| TTAGTGCAAATTCTGTATAT+GGG | 0.402322 | 3.4:-87392381 | MS.gene013296:CDS |
| AATTTCCTTTCTACTTTCCA+GGG | 0.404260 | 3.4:-87395258 | MS.gene013296:CDS |
| GGTACTCTGTCTCCAACATT+TGG | 0.407777 | 3.4:+87389448 | None:intergenic |
| GGTTGCGACGGAGGCGCCGC+TGG | 0.412352 | 3.4:+87400156 | None:intergenic |
| TTGTTCTGACCCTGCCTGCT+TGG | 0.414305 | 3.4:+87395068 | None:intergenic |
| TCGAAGAGACAATTGCTTGT+TGG | 0.417586 | 3.4:-87391227 | MS.gene013296:CDS |
| TAAGGTTTACCTTGATGCTC+TGG | 0.417701 | 3.4:+87395234 | None:intergenic |
| GATAGAGGTATTCAGATTGA+TGG | 0.418951 | 3.4:-87398908 | MS.gene013296:CDS |
| GAAGGCAAAACAAAAGAATC+TGG | 0.419723 | 3.4:-87395103 | MS.gene013296:CDS |
| AAGGAGAAGTCCTGCTAGCT+TGG | 0.420086 | 3.4:-87398282 | MS.gene013296:CDS |
| TGTTTACAATTATGTGGAAA+TGG | 0.422331 | 3.4:-87395300 | MS.gene013296:CDS |
| CGACTTGCCTTATCTTATTG+AGG | 0.422712 | 3.4:-87397875 | MS.gene013296:intron |
| ATCCAATTGCAACCTTGCTT+CGG | 0.423813 | 3.4:+87387148 | None:intergenic |
| GGCCGAAGCAAGGTTGCAAT+TGG | 0.423903 | 3.4:-87387150 | MS.gene013296:CDS |
| CCAGAAGTGATAAATCTATA+CGG | 0.424921 | 3.4:+87391101 | None:intergenic |
| CTCCAGAAGGGGAGTATTCA+AGG | 0.426629 | 3.4:-87398596 | MS.gene013296:CDS |
| ATCACATCAACACCAACAAT+AGG | 0.426682 | 3.4:+87398319 | None:intergenic |
| GGGTTTACAGGGGCTTCTAT+TGG | 0.427389 | 3.4:-87392361 | MS.gene013296:CDS |
| ACGGGATCATGGGTAGGTTC+AGG | 0.429528 | 3.4:+87398513 | None:intergenic |
| ATAGCAGAATTTCCAATTCT+GGG | 0.430291 | 3.4:-87397689 | MS.gene013296:CDS |
| ATAAATTTAGGGCATACTTC+CGG | 0.431365 | 3.4:-87392809 | MS.gene013296:intron |
| CAATAGGGGAACATGAGTTA+AGG | 0.437244 | 3.4:+87398335 | None:intergenic |
| TTCATTATACCGCTGTTTGA+CGG | 0.438939 | 3.4:+87389046 | None:intergenic |
| TTTGTAGGCAGTATGGGATC+AGG | 0.439416 | 3.4:-87397383 | MS.gene013296:intron |
| AGCACATTTCCTTTCCGAGC+AGG | 0.440402 | 3.4:-87397164 | MS.gene013296:intron |
| CTTGAGAAGGCTGTTCTAGA+TGG | 0.441753 | 3.4:-87392572 | MS.gene013296:CDS |
| GATGTTTGTTTACAATTATG+TGG | 0.443229 | 3.4:-87395306 | MS.gene013296:CDS |
| CGTGAGTTGGATTTGTTCAT+CGG | 0.443722 | 3.4:+87400186 | None:intergenic |
| GCAGCTTTAATAATAACATA+AGG | 0.443793 | 3.4:+87389427 | None:intergenic |
| GAGGTTGTGGACAGAGTGTC+AGG | 0.443798 | 3.4:-87387538 | MS.gene013296:CDS |
| TGATAGGGTTTGACAAAGAC+AGG | 0.443995 | 3.4:-87390936 | MS.gene013296:intron |
| TTGGTTGCAAAGCTTTACTT+AGG | 0.444241 | 3.4:-87388997 | MS.gene013296:intron |
| CGGGATCATGGGTAGGTTCA+GGG | 0.449971 | 3.4:+87398514 | None:intergenic |
| CTTGTATCCGTCTATTATGA+TGG | 0.450206 | 3.4:-87393190 | MS.gene013296:CDS |
| AGATCTTCTAATCTCATTCC+AGG | 0.454352 | 3.4:+87399535 | None:intergenic |
| ATTATATCTGATCTTCAGAA+TGG | 0.456076 | 3.4:-87396635 | MS.gene013296:CDS |
| GCAAAATCCAAAGTAGCAAT+TGG | 0.456950 | 3.4:+87393216 | None:intergenic |
| TTGTTCTCTAGCACATAGAT+AGG | 0.459067 | 3.4:+87389274 | None:intergenic |
| GGACCTGGATCACGGGATCA+TGG | 0.461163 | 3.4:+87398502 | None:intergenic |
| TCAATTTATCCAAAAGTCGT+TGG | 0.464811 | 3.4:+87395327 | None:intergenic |
| ATGGAAATGCAGAAACTAGA+AGG | 0.466797 | 3.4:-87396616 | MS.gene013296:CDS |
| GTGCCAAGGTTCACTTCATC+AGG | 0.470374 | 3.4:-87387514 | MS.gene013296:CDS |
| AGCGTTTGCTGCAAGGTTCA+CGG | 0.471204 | 3.4:-87399589 | MS.gene013296:CDS |
| GAATCGTCCTCCTCTCTCTC+AGG | 0.471952 | 3.4:-87399983 | MS.gene013296:CDS |
| GTCGATGAACTCTTCTTCCT+GGG | 0.474979 | 3.4:+87400110 | None:intergenic |
| TAGATCTTGTGTGGCTTCCA+TGG | 0.475142 | 3.4:+87389083 | None:intergenic |
| ATTCCTAATGCCAAGCAGGC+AGG | 0.478715 | 3.4:-87395078 | MS.gene013296:CDS |
| TACCCATGATCCCGTGATCC+AGG | 0.479182 | 3.4:-87398505 | MS.gene013296:intron |
| AATAGGGGAACATGAGTTAA+GGG | 0.479734 | 3.4:+87398336 | None:intergenic |
| TTAACAAATGTTTCACCAGA+TGG | 0.481368 | 3.4:+87392954 | None:intergenic |
| CGGCAGCTAGCAACCATTGT+TGG | 0.482378 | 3.4:+87399238 | None:intergenic |
| TGGAAAGTAGAAAGGAAATT+GGG | 0.484383 | 3.4:+87395261 | None:intergenic |
| CAGGTATTAGAGGCAAGGGC+TGG | 0.486574 | 3.4:-87393252 | MS.gene013296:CDS |
| TTCTTGCTAATCAGGAGGTA+TGG | 0.488582 | 3.4:+87391392 | None:intergenic |
| TTCTACTGTAAAAGATGCTA+TGG | 0.488640 | 3.4:-87391617 | MS.gene013296:CDS |
| TGGAGCATGACTAATCAAAT+CGG | 0.490632 | 3.4:+87398614 | None:intergenic |
| GTCAAAGCATGCAGCGTCCC+AGG | 0.493896 | 3.4:-87400127 | MS.gene013296:CDS |
| TCAACGAACAAAACTCCATC+TGG | 0.497621 | 3.4:-87392969 | MS.gene013296:CDS |
| TAATATCAGGGTCTACTTCA+CGG | 0.497695 | 3.4:+87397923 | None:intergenic |
| AAATTGCATTCTTGACATGC+TGG | 0.501353 | 3.4:+87391140 | None:intergenic |
| GCGTTTGCTGCAAGGTTCAC+GGG | 0.505865 | 3.4:-87399588 | MS.gene013296:CDS |
| ATGATTGATTGCAACATAGT+TGG | 0.506217 | 3.4:-87398827 | MS.gene013296:CDS |
| AAGAAGCAGTATACTTGCAT+TGG | 0.510400 | 3.4:-87389016 | MS.gene013296:CDS |
| TCAGAACAAGGAACATTTGA+AGG | 0.513678 | 3.4:-87395054 | MS.gene013296:CDS |
| TGGCAGACAGTTGGCTCTGA+AGG | 0.514916 | 3.4:-87392552 | MS.gene013296:intron |
| CAAGACGAGAAGCTAGGGCT+TGG | 0.515575 | 3.4:+87400013 | None:intergenic |
| GTAAAGAAGTCACCGTAGAA+GGG | 0.515612 | 3.4:-87397356 | MS.gene013296:CDS |
| ATCAACACCTCAATAAGATA+AGG | 0.518113 | 3.4:+87397868 | None:intergenic |
| AATATTCGAATTATAGCAGC+AGG | 0.520192 | 3.4:+87399716 | None:intergenic |
| GAACTCTACTGTTCCTGATA+CGG | 0.522041 | 3.4:+87397666 | None:intergenic |
| ACTTAGCAAGACGAGAAGCT+AGG | 0.523558 | 3.4:+87400007 | None:intergenic |
| GCTATTAGCAGCCCGTAAAA+GGG | 0.524973 | 3.4:-87392773 | MS.gene013296:CDS |
| GAGAAGTCCTGCTAGCTTGG+AGG | 0.525804 | 3.4:-87398279 | MS.gene013296:CDS |
| GTGCGTTGGACCTGGATCAC+GGG | 0.526487 | 3.4:+87398495 | None:intergenic |
| AGTCCAATTTGATCTGCTCC+AGG | 0.526712 | 3.4:-87397331 | MS.gene013296:intron |
| AAGGTACCCTCCAAGCTAGC+AGG | 0.529382 | 3.4:+87398272 | None:intergenic |
| ATTAGCAAGAAGAGATATGC+TGG | 0.531059 | 3.4:-87391380 | MS.gene013296:CDS |
| GCTGCTACTGCTCCAAATGT+TGG | 0.531286 | 3.4:-87389460 | MS.gene013296:CDS |
| TACCGTTGCACTTCCAACAA+TGG | 0.535590 | 3.4:-87399251 | MS.gene013296:CDS |
| GACCTGGATCACGGGATCAT+GGG | 0.535943 | 3.4:+87398503 | None:intergenic |
| TCGTCAAGTGTAACTAGCTA+TGG | 0.536620 | 3.4:-87392316 | MS.gene013296:intron |
| TAGCTTCTCGTCTTGCTAAG+TGG | 0.538098 | 3.4:-87400005 | MS.gene013296:CDS |
| GACGCTGCATGCTTTGACGG+TGG | 0.538822 | 3.4:+87400132 | None:intergenic |
| GCTTTCTCAACTTCTTAGGA+AGG | 0.541054 | 3.4:-87395121 | MS.gene013296:CDS |
| AGATAGTATTGAGGATCTAT+GGG | 0.543246 | 3.4:+87389247 | None:intergenic |
| AGAAGTCCTGCTAGCTTGGA+GGG | 0.544516 | 3.4:-87398278 | MS.gene013296:intron |
| CATCATAATAGACGGATACA+AGG | 0.544705 | 3.4:+87393191 | None:intergenic |
| ATGGCAGGTATTCTTGATAG+AGG | 0.546699 | 3.4:-87398923 | MS.gene013296:intron |
| AGGACATAGCGTTTGCTGCA+AGG | 0.547512 | 3.4:-87399596 | MS.gene013296:CDS |
| CTGGCCCCTGGAAAGTAGAA+AGG | 0.548947 | 3.4:+87395253 | None:intergenic |
| TTGACATGCTGGACTGCCGC+AGG | 0.549639 | 3.4:+87391151 | None:intergenic |
| CTTAGCAAGACGAGAAGCTA+GGG | 0.550019 | 3.4:+87400008 | None:intergenic |
| GACGGTGGTGGTTGCGACGG+AGG | 0.550871 | 3.4:+87400147 | None:intergenic |
| AAATTGGACTCTCCCTTCTA+CGG | 0.550872 | 3.4:+87397344 | None:intergenic |
| CATCTAGAACAGCCTTCTCA+AGG | 0.552404 | 3.4:+87392573 | None:intergenic |
| TGATTCTCAAGATAGTATTG+AGG | 0.553012 | 3.4:+87389238 | None:intergenic |
| ATCACTTCTGGTTATTACGA+AGG | 0.555770 | 3.4:-87391089 | MS.gene013296:intron |
| TTGATTAGTCATGCTCCAGA+AGG | 0.556505 | 3.4:-87398609 | MS.gene013296:CDS |
| GGTATTCAGATTGATGGTGT+TGG | 0.557356 | 3.4:-87398902 | MS.gene013296:CDS |
| GGTCATTCCTAATGCCAAGC+AGG | 0.558136 | 3.4:-87395082 | MS.gene013296:CDS |
| CTCATGTTGAACTCGCTGAA+AGG | 0.558424 | 3.4:-87390890 | MS.gene013296:CDS |
| GAGAGATACTCCTGAGAGAG+AGG | 0.559837 | 3.4:+87399973 | None:intergenic |
| GCTAATCTGGTAACTCTACA+AGG | 0.560428 | 3.4:-87398391 | MS.gene013296:CDS |
| GTTATTATTAAAGCTGCCAA+AGG | 0.561071 | 3.4:-87389421 | MS.gene013296:CDS |
| ATATTTGGGGTAACGAAGGA+AGG | 0.563084 | 3.4:-87399698 | MS.gene013296:intron |
| TAATTTATGTTATTGCACAC+TGG | 0.565837 | 3.4:-87393163 | MS.gene013296:intron |
| TCTGCATACATTGCAAAGGA+AGG | 0.566889 | 3.4:-87387731 | MS.gene013296:CDS |
| GGTGCGTTGGACCTGGATCA+CGG | 0.567777 | 3.4:+87398494 | None:intergenic |
| TTGTAGGCAGTATGGGATCA+GGG | 0.567895 | 3.4:-87397382 | MS.gene013296:intron |
| AGATGCTATGGATTTGGGGA+AGG | 0.569080 | 3.4:-87391605 | MS.gene013296:CDS |
| GCTGCATGCTTTGACGGTGG+TGG | 0.570970 | 3.4:+87400135 | None:intergenic |
| TGCTATAATTCGAATATTTG+GGG | 0.571239 | 3.4:-87399711 | MS.gene013296:CDS |
| CATGACAAAATGGACACTAA+AGG | 0.572545 | 3.4:-87391332 | MS.gene013296:intron |
| TCGAATATTTGGGGTAACGA+AGG | 0.574043 | 3.4:-87399702 | MS.gene013296:CDS |
| GTTCAGGGAAGTGACCTTTG+CGG | 0.575429 | 3.4:+87398529 | None:intergenic |
| TTCCTAATGCCAAGCAGGCA+GGG | 0.577995 | 3.4:-87395077 | MS.gene013296:CDS |
| ATTCTGTATATGGGTTTACA+GGG | 0.578073 | 3.4:-87392372 | MS.gene013296:CDS |
| TCAAAACTCAAAATGCGAAA+CGG | 0.578782 | 3.4:+87398567 | None:intergenic |
| TATCAAACTAGAATTTGAGA+AGG | 0.579480 | 3.4:-87391423 | MS.gene013296:CDS |
| ATCTAGAACAGCCTTCTCAA+GGG | 0.581850 | 3.4:+87392574 | None:intergenic |
| ATTTCCTTTCTACTTTCCAG+GGG | 0.581948 | 3.4:-87395257 | MS.gene013296:CDS |
| AATTCTAAAGAATGCTAGCA+AGG | 0.582619 | 3.4:-87389113 | MS.gene013296:CDS |
| TGTTCTAGATGGCAGACAGT+TGG | 0.583212 | 3.4:-87392561 | MS.gene013296:CDS |
| TGATTAGTCATGCTCCAGAA+GGG | 0.583990 | 3.4:-87398608 | MS.gene013296:CDS |
| ATTGATTGCAACATAGTTGG+TGG | 0.585023 | 3.4:-87398824 | MS.gene013296:CDS |
| AATAGAAACAGCAATGTACA+AGG | 0.585195 | 3.4:-87399358 | MS.gene013296:CDS |
| ATTGAATGTGCTGGCCGCAA+AGG | 0.586141 | 3.4:-87398543 | MS.gene013296:CDS |
| CACATCAACACCAACAATAG+GGG | 0.589219 | 3.4:+87398321 | None:intergenic |
| AATTGGATTGAAATTCCTGC+TGG | 0.589774 | 3.4:-87398800 | MS.gene013296:CDS |
| CTTGCAGGTATTAGAGGCAA+GGG | 0.590580 | 3.4:-87393256 | MS.gene013296:intron |
| TAAAGCTGCCAAAGGTGCCA+AGG | 0.590998 | 3.4:-87389413 | MS.gene013296:intron |
| TCACGTTACGAATTAATGGC+TGG | 0.591515 | 3.4:+87398362 | None:intergenic |
| ACTTGCAGGTATTAGAGGCA+AGG | 0.594928 | 3.4:-87393257 | MS.gene013296:intron |
| ATCAGGATGTTCTCTGCACA+AGG | 0.595333 | 3.4:-87387497 | MS.gene013296:intron |
| GGCAAAAGATCCCCTTGAGA+AGG | 0.596875 | 3.4:-87392585 | MS.gene013296:CDS |
| CTGCATACATTGCAAAGGAA+GGG | 0.597289 | 3.4:-87387730 | MS.gene013296:CDS |
| CAACTCACGCAAGCGTCCAG+CGG | 0.599592 | 3.4:-87400172 | MS.gene013296:CDS |
| TTGGATAGATGGAACTTCTG+AGG | 0.601724 | 3.4:-87387131 | None:intergenic |
| TTATATGCCATCATAATAGA+CGG | 0.602243 | 3.4:+87393183 | None:intergenic |
| AAGCAGGCAGGGTCAGAACA+AGG | 0.603830 | 3.4:-87395066 | MS.gene013296:CDS |
| ACAATGGTTGCTAGCTGCCG+TGG | 0.604224 | 3.4:-87399235 | MS.gene013296:intron |
| TCTTGAGAATCAAATTAGCA+AGG | 0.608457 | 3.4:-87389227 | MS.gene013296:intron |
| CATCCTGATGAAGTGAACCT+TGG | 0.612280 | 3.4:+87387511 | None:intergenic |
| GATTAGTCATGCTCCAGAAG+GGG | 0.612459 | 3.4:-87398607 | MS.gene013296:CDS |
| GAAGCTGCTGAACATATTAG+CGG | 0.613218 | 3.4:-87391583 | MS.gene013296:CDS |
| GCTAGCAAGGAACTTCTCCA+TGG | 0.615198 | 3.4:-87389100 | MS.gene013296:CDS |
| TAAAAGATGCTATGGATTTG+GGG | 0.616917 | 3.4:-87391609 | MS.gene013296:CDS |
| AACCATTGTTGGAAGTGCAA+CGG | 0.617928 | 3.4:+87399249 | None:intergenic |
| TATATCCAATAATAATATCA+GGG | 0.621604 | 3.4:+87397911 | None:intergenic |
| ATCTCTTCTTGCTAATCAGG+AGG | 0.623956 | 3.4:+87391387 | None:intergenic |
| CTTGACGATATCTCTAAGCA+AGG | 0.624736 | 3.4:+87392331 | None:intergenic |
| TTTGACGGTGGTGGTTGCGA+CGG | 0.625344 | 3.4:+87400144 | None:intergenic |
| GTGACCATACCTGCTCGGAA+AGG | 0.625816 | 3.4:+87397155 | None:intergenic |
| AATTTATCCAAAAGTCGTTG+GGG | 0.625884 | 3.4:+87395329 | None:intergenic |
| AGAAGGGGAGTATTCAAGGA+TGG | 0.626666 | 3.4:-87398592 | MS.gene013296:CDS |
| TTCCAGGGGCCAGAGCATCA+AGG | 0.628778 | 3.4:-87395243 | MS.gene013296:intron |
| AAAGTGTGACCATACCTGCT+CGG | 0.630421 | 3.4:+87397150 | None:intergenic |
| TCTAGAACAGCCTTCTCAAG+GGG | 0.631653 | 3.4:+87392575 | None:intergenic |
| CTTGGCGTTGCTCTAAGTCA+CGG | 0.631715 | 3.4:+87400031 | None:intergenic |
| ACTCTCTGCATACATTGCAA+AGG | 0.637934 | 3.4:-87387735 | MS.gene013296:CDS |
| CCTTCAAGCAATACACAGCA+AGG | 0.639064 | 3.4:+87396591 | None:intergenic |
| TCTGGTAACTCTACAAGGAG+AGG | 0.640441 | 3.4:-87398386 | MS.gene013296:CDS |
| AAATAGAAATAGATCTTGTG+TGG | 0.641111 | 3.4:+87389074 | None:intergenic |
| TTCTGTATATGGGTTTACAG+GGG | 0.644731 | 3.4:-87392371 | MS.gene013296:CDS |
| TGGATCACGGGATCATGGGT+AGG | 0.644977 | 3.4:+87398507 | None:intergenic |
| GTGATGTCATTTGATACAGA+AGG | 0.658753 | 3.4:-87398301 | MS.gene013296:CDS |
| CTTCTAATCTCATTCCAGGA+GGG | 0.659786 | 3.4:+87399539 | None:intergenic |
| ACTCGCTGAAAGGATGCGCA+AGG | 0.665639 | 3.4:-87390880 | MS.gene013296:intron |
| TGGCTATGCAAACAATGCTG+AGG | 0.666765 | 3.4:-87392128 | MS.gene013296:intron |
| ACAGAGTGTCAGGAGTGCCA+AGG | 0.678022 | 3.4:-87387528 | MS.gene013296:CDS |
| AGATACTCCTGAGAGAGAGG+AGG | 0.680540 | 3.4:+87399976 | None:intergenic |
| TGGAGACACAGATTCAGTCA+TGG | 0.680798 | 3.4:-87391653 | MS.gene013296:CDS |
| CCAGGCTTATGAGAGATCAG+AGG | 0.682650 | 3.4:-87389299 | MS.gene013296:intron |
| ATTTCTACTCCGTCAAACAG+CGG | 0.684218 | 3.4:-87389055 | MS.gene013296:CDS |
| ATTTATCCAAAAGTCGTTGG+GGG | 0.690986 | 3.4:+87395330 | None:intergenic |
| TCTTCTAATCTCATTCCAGG+AGG | 0.700916 | 3.4:+87399538 | None:intergenic |
| GATCGAGAAGAACATTCCTG+CGG | 0.749093 | 3.4:-87391167 | MS.gene013296:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 87387133 | 87400205 | 87387133 | ID=MS.gene013296 |
| chr3.4 | mRNA | 87387133 | 87400205 | 87387133 | ID=MS.gene013296.t1;Parent=MS.gene013296 |
| chr3.4 | exon | 87399956 | 87400205 | 87399956 | ID=MS.gene013296.t1.exon1;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87399956 | 87400205 | 87399956 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87399699 | 87399809 | 87399699 | ID=MS.gene013296.t1.exon2;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87399699 | 87399809 | 87399699 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87399510 | 87399616 | 87399510 | ID=MS.gene013296.t1.exon3;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87399510 | 87399616 | 87399510 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87399236 | 87399398 | 87399236 | ID=MS.gene013296.t1.exon4;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87399236 | 87399398 | 87399236 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87398743 | 87398938 | 87398743 | ID=MS.gene013296.t1.exon5;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87398743 | 87398938 | 87398743 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87398506 | 87398641 | 87398506 | ID=MS.gene013296.t1.exon6;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87398506 | 87398641 | 87398506 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87398279 | 87398416 | 87398279 | ID=MS.gene013296.t1.exon7;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87398279 | 87398416 | 87398279 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87397876 | 87397953 | 87397876 | ID=MS.gene013296.t1.exon8;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87397876 | 87397953 | 87397876 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87397638 | 87397729 | 87397638 | ID=MS.gene013296.t1.exon9;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87397638 | 87397729 | 87397638 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87397332 | 87397398 | 87397332 | ID=MS.gene013296.t1.exon10;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87397332 | 87397398 | 87397332 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87397165 | 87397236 | 87397165 | ID=MS.gene013296.t1.exon11;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87397165 | 87397236 | 87397165 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87396592 | 87396678 | 87396592 | ID=MS.gene013296.t1.exon12;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87396592 | 87396678 | 87396592 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87395244 | 87395363 | 87395244 | ID=MS.gene013296.t1.exon13;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87395244 | 87395363 | 87395244 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87395047 | 87395145 | 87395047 | ID=MS.gene013296.t1.exon14;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87395047 | 87395145 | 87395047 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87393164 | 87393271 | 87393164 | ID=MS.gene013296.t1.exon15;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87393164 | 87393271 | 87393164 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87392938 | 87393033 | 87392938 | ID=MS.gene013296.t1.exon16;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87392938 | 87393033 | 87392938 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87392756 | 87392821 | 87392756 | ID=MS.gene013296.t1.exon17;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87392756 | 87392821 | 87392756 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87392553 | 87392609 | 87392553 | ID=MS.gene013296.t1.exon18;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87392553 | 87392609 | 87392553 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87392317 | 87392404 | 87392317 | ID=MS.gene013296.t1.exon19;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87392317 | 87392404 | 87392317 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87392129 | 87392208 | 87392129 | ID=MS.gene013296.t1.exon20;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87392129 | 87392208 | 87392129 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87391570 | 87391683 | 87391570 | ID=MS.gene013296.t1.exon21;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87391570 | 87391683 | 87391570 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87391333 | 87391447 | 87391333 | ID=MS.gene013296.t1.exon22;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87391333 | 87391447 | 87391333 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87391090 | 87391262 | 87391090 | ID=MS.gene013296.t1.exon23;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87391090 | 87391262 | 87391090 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87390881 | 87390952 | 87390881 | ID=MS.gene013296.t1.exon24;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87390881 | 87390952 | 87390881 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87389414 | 87389488 | 87389414 | ID=MS.gene013296.t1.exon25;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87389414 | 87389488 | 87389414 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87389228 | 87389317 | 87389228 | ID=MS.gene013296.t1.exon26;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87389228 | 87389317 | 87389228 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87388998 | 87389158 | 87388998 | ID=MS.gene013296.t1.exon27;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87388998 | 87389158 | 87388998 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87387697 | 87387767 | 87387697 | ID=MS.gene013296.t1.exon28;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87387697 | 87387767 | 87387697 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87387498 | 87387585 | 87387498 | ID=MS.gene013296.t1.exon29;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87387498 | 87387585 | 87387498 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| chr3.4 | exon | 87387133 | 87387220 | 87387133 | ID=MS.gene013296.t1.exon30;Parent=MS.gene013296.t1 |
| chr3.4 | CDS | 87387133 | 87387220 | 87387133 | ID=cds.MS.gene013296.t1;Parent=MS.gene013296.t1 |
| Gene Sequence |
| Protein sequence |
