AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003336

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003336.t1 MTR_8g043650 88.608 237 27 0 1 237 1 237 2.59e-158 438
MS.gene003336.t1 MTR_1g105920 90.868 219 20 0 1 219 1 219 1.44e-150 419
MS.gene003336.t1 MTR_1g105910 88.608 237 27 0 1 237 1 237 1.79e-150 418
MS.gene003336.t1 MTR_2g030740 90.295 237 23 0 1 237 1 237 9.79e-150 416
MS.gene003336.t1 MTR_1g012570 88.186 237 28 0 1 237 1 237 1.87e-144 403
MS.gene003336.t1 MTR_3g052920 86.301 219 30 0 1 219 1 219 3.95e-143 400
MS.gene003336.t1 MTR_1g105905 82.273 220 39 0 18 237 1 220 1.92e-135 380
MS.gene003336.t1 MTR_3g052870 81.279 219 22 1 1 219 1 200 4.18e-127 358
MS.gene003336.t1 MTR_3g030770 74.894 235 41 3 1 225 1 227 2.06e-123 350
MS.gene003336.t1 MTR_1g108510 74.894 235 41 3 1 225 1 227 5.78e-123 348
MS.gene003336.t1 MTR_0121s0080 71.730 237 66 1 1 237 1 236 1.74e-122 347
MS.gene003336.t1 MTR_5g055100 67.511 237 77 0 1 237 1 237 8.89e-121 343
MS.gene003336.t1 MTR_2g093190 74.043 235 43 3 1 225 1 227 1.54e-120 342
MS.gene003336.t1 MTR_2g085280 67.797 236 76 0 1 236 1 236 3.50e-120 342
MS.gene003336.t1 MTR_2g085250 67.797 236 76 0 1 236 1 236 9.47e-120 340
MS.gene003336.t1 MTR_1g077360 71.111 225 65 0 1 225 1 225 1.32e-119 340
MS.gene003336.t1 MTR_1g106070 89.011 182 20 0 1 182 1 182 7.05e-119 336
MS.gene003336.t1 MTR_1g075600 71.111 225 65 0 1 225 1 225 1.33e-118 338
MS.gene003336.t1 MTR_1g108580 71.915 235 48 3 1 225 1 227 7.66e-117 333
MS.gene003336.t1 MTR_5g045560 70.886 237 69 0 1 237 1 237 9.09e-117 333
MS.gene003336.t1 MTR_5g053390 69.333 225 69 0 1 225 1 225 4.09e-114 326
MS.gene003336.t1 MTR_7g062350 66.368 223 73 2 16 237 27 248 7.76e-102 296
MS.gene003336.t1 MTR_1g075570 64.607 178 49 1 18 195 1 164 3.67e-71 215
MS.gene003336.t1 MTR_0121s0100 76.562 128 30 0 1 128 1 128 1.05e-66 202
MS.gene003336.t1 MTR_3g080940 52.973 185 77 1 7 191 7 181 1.78e-65 202
MS.gene003336.t1 MTR_3g030780 74.419 129 33 0 1 129 1 129 3.88e-64 196
MS.gene003336.t1 MTR_3g067910 69.608 102 31 0 21 122 2 103 8.22e-47 151
MS.gene003336.t1 MTR_2g105290 39.884 173 94 2 5 174 8 173 3.34e-41 139
MS.gene003336.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 1.87e-39 134
MS.gene003336.t1 MTR_7g028448 44.516 155 74 3 5 159 8 150 3.39e-34 120
MS.gene003336.t1 MTR_4g036915 44.516 155 74 3 5 159 8 150 3.39e-34 120
MS.gene003336.t1 MTR_4g127140 38.043 184 94 4 5 175 8 184 2.19e-31 114
MS.gene003336.t1 MTR_1g108500 57.522 113 25 2 8 118 94 185 1.86e-30 115
MS.gene003336.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 2.03e-27 100
MS.gene003336.t1 MTR_3g067915 52.128 94 45 0 33 126 3 96 2.04e-25 95.9
MS.gene003336.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.22e-24 96.7
MS.gene003336.t1 MTR_8g051580 45.238 126 64 4 9 131 2 125 1.97e-24 95.9
MS.gene003336.t1 MTR_8g079502 60.563 71 28 0 9 79 2 72 2.65e-24 95.9
MS.gene003336.t1 MTR_8g046350 43.860 114 57 2 9 122 2 108 5.55e-24 94.4
MS.gene003336.t1 MTR_3g067870 70.492 61 18 0 16 76 83 143 1.87e-23 92.8
MS.gene003336.t1 MTR_1g054265 55.844 77 34 0 9 85 2 78 2.45e-23 92.8
MS.gene003336.t1 MTR_1g063160 46.429 112 55 3 9 118 2 110 2.56e-23 93.2
MS.gene003336.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 2.58e-23 94.0
MS.gene003336.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 3.31e-20 84.3
MS.gene003336.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 4.27e-19 83.2
MS.gene003336.t1 MTR_4g093970 33.939 165 86 3 10 153 29 191 5.46e-19 83.2
MS.gene003336.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.56e-18 80.5
MS.gene003336.t1 MTR_3g452380 51.351 74 36 0 3 76 11 84 1.80e-18 81.6
MS.gene003336.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 2.22e-18 80.5
MS.gene003336.t1 MTR_8g033220 27.948 229 125 6 10 220 3 209 2.32e-18 81.3
MS.gene003336.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 2.91e-18 81.3
MS.gene003336.t1 MTR_8g033220 27.948 229 125 6 10 220 3 209 2.96e-18 80.9
MS.gene003336.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 1.17e-17 78.2
MS.gene003336.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.35e-17 79.0
MS.gene003336.t1 MTR_5g032520 28.638 213 128 6 9 201 2 210 1.52e-17 79.0
MS.gene003336.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.17e-17 79.0
MS.gene003336.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.38e-17 78.2
MS.gene003336.t1 MTR_2g017865 29.730 185 101 5 9 167 17 198 3.39e-17 78.6
MS.gene003336.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.01e-16 75.9
MS.gene003336.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.06e-16 76.6
MS.gene003336.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.08e-16 77.0
MS.gene003336.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.17e-16 76.3
MS.gene003336.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.40e-16 76.3
MS.gene003336.t1 MTR_8g066260 36.449 107 64 2 9 115 2 104 2.53e-16 75.9
MS.gene003336.t1 MTR_3g102570 41.346 104 58 3 9 111 2 103 2.73e-16 77.0
MS.gene003336.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.25e-16 76.3
MS.gene003336.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 4.62e-16 75.5
MS.gene003336.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.07e-15 74.3
MS.gene003336.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.25e-15 73.9
MS.gene003336.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 1.25e-15 75.1
MS.gene003336.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.29e-15 69.3
MS.gene003336.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.32e-15 73.6
MS.gene003336.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.35e-15 73.9
MS.gene003336.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 1.50e-15 72.8
MS.gene003336.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 2.04e-15 72.8
MS.gene003336.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.03e-15 72.4
MS.gene003336.t1 MTR_7g016630 28.704 216 134 7 9 207 2 214 5.37e-15 72.4
MS.gene003336.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.45e-15 69.3
MS.gene003336.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.58e-15 72.0
MS.gene003336.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.89e-15 72.0
MS.gene003336.t1 MTR_3g109930 31.429 140 80 3 27 159 20 150 1.80e-14 69.3
MS.gene003336.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene003336.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.67e-14 70.1
MS.gene003336.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.24e-14 68.9
MS.gene003336.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 4.77e-14 69.7
MS.gene003336.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 5.30e-14 68.2
MS.gene003336.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 6.11e-14 69.3
MS.gene003336.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.14e-14 69.3
MS.gene003336.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.03e-13 68.6
MS.gene003336.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.11e-13 67.8
MS.gene003336.t1 MTR_4g108720 29.545 176 102 9 9 172 2 167 7.32e-13 67.4
MS.gene003336.t1 MTR_4g051538 30.288 208 124 6 5 208 5 195 1.73e-12 65.1
MS.gene003336.t1 MTR_4g093030 47.541 61 32 0 9 69 2 62 2.77e-12 63.2
MS.gene003336.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.28e-11 60.8
MS.gene003336.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.49e-11 61.2
MS.gene003336.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.70e-11 61.2
MS.gene003336.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.87e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003336.t1 AT5G60440 54.787 188 78 3 5 189 3 186 7.09e-63 198
MS.gene003336.t1 AT2G24840 49.390 164 72 4 6 163 60 218 3.22e-44 149
MS.gene003336.t1 AT1G65360 39.111 225 126 6 5 225 3 220 8.62e-42 142
MS.gene003336.t1 AT1G01530 43.750 192 96 4 4 192 2 184 5.82e-41 140
MS.gene003336.t1 AT4G36590 46.296 162 81 2 5 160 3 164 1.03e-38 135
MS.gene003336.t1 AT2G34440 36.747 166 93 4 9 169 2 160 6.18e-27 102
MS.gene003336.t1 AT3G04100 34.969 163 100 4 2 159 7 168 6.90e-27 103
MS.gene003336.t1 AT3G66656 42.748 131 70 2 9 134 2 132 2.32e-26 100
MS.gene003336.t1 AT1G72350 34.211 152 67 3 9 160 43 161 1.62e-22 92.0
MS.gene003336.t1 AT4G22950 41.818 110 61 1 10 119 3 109 2.63e-20 85.1
MS.gene003336.t1 AT4G22950 33.333 168 90 3 10 167 3 158 5.67e-20 85.5
MS.gene003336.t1 AT4G22950 33.333 168 90 3 10 167 3 158 5.67e-20 85.5
MS.gene003336.t1 AT1G28460 29.560 159 108 2 5 161 4 160 1.11e-19 83.6
MS.gene003336.t1 AT1G29962 29.651 172 114 4 5 169 4 175 1.28e-19 83.6
MS.gene003336.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.41e-19 83.6
MS.gene003336.t1 AT2G45660 33.929 168 83 6 10 162 3 157 2.42e-19 82.0
MS.gene003336.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.91e-19 83.6
MS.gene003336.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.06e-19 83.6
MS.gene003336.t1 AT4G09960 46.512 86 45 1 9 93 12 97 4.14e-19 83.6
MS.gene003336.t1 AT4G09960 46.512 86 45 1 9 93 28 113 6.24e-19 83.2
MS.gene003336.t1 AT2G45650 52.941 68 32 0 9 76 2 69 9.46e-19 82.8
MS.gene003336.t1 AT2G45660 33.735 166 82 6 10 160 3 155 1.07e-18 81.6
MS.gene003336.t1 AT4G09960 46.512 86 45 1 9 93 97 182 1.89e-18 83.2
MS.gene003336.t1 AT2G22540 39.130 138 64 5 9 132 2 133 2.45e-18 81.3
MS.gene003336.t1 AT2G22540 39.130 138 64 5 9 132 2 133 2.45e-18 81.3
MS.gene003336.t1 AT4G18960 46.154 91 47 2 5 94 15 104 8.08e-18 80.1
MS.gene003336.t1 AT4G24540 34.395 157 68 5 9 156 2 132 1.73e-17 78.6
MS.gene003336.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.12e-17 77.0
MS.gene003336.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.29e-17 78.6
MS.gene003336.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.29e-17 78.6
MS.gene003336.t1 AT1G22130 38.053 113 68 2 9 120 2 113 3.58e-17 79.7
MS.gene003336.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.61e-17 75.9
MS.gene003336.t1 AT3G61120 51.471 68 33 0 9 76 2 69 3.68e-17 78.2
MS.gene003336.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.05e-17 77.4
MS.gene003336.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.20e-17 78.2
MS.gene003336.t1 AT3G58780 50.704 71 35 0 6 76 20 90 4.37e-17 78.2
MS.gene003336.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.79e-17 76.6
MS.gene003336.t1 AT3G58780 50.704 71 35 0 6 76 14 84 7.60e-17 78.2
MS.gene003336.t1 AT5G51870 53.731 67 31 0 10 76 3 69 7.82e-17 77.0
MS.gene003336.t1 AT5G51870 53.731 67 31 0 10 76 13 79 9.17e-17 77.0
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.23e-17 73.9
MS.gene003336.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.07e-16 76.6
MS.gene003336.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.10e-16 75.5
MS.gene003336.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.12e-16 76.3
MS.gene003336.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.12e-16 75.1
MS.gene003336.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.14e-16 76.6
MS.gene003336.t1 AT1G77980 38.095 105 64 1 9 112 2 106 1.26e-16 78.2
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.28e-16 74.7
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.28e-16 74.7
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.28e-16 74.7
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.67e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.67e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.67e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.67e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.67e-16 74.3
MS.gene003336.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.69e-16 75.1
MS.gene003336.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.87e-16 75.5
MS.gene003336.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.87e-16 76.3
MS.gene003336.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.87e-16 76.3
MS.gene003336.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.93e-16 76.6
MS.gene003336.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.95e-16 76.6
MS.gene003336.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.03e-16 75.1
MS.gene003336.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.41e-16 76.3
MS.gene003336.t1 AT4G11880 48.611 72 36 1 10 80 3 74 2.99e-16 74.3
MS.gene003336.t1 AT4G11880 48.611 72 36 1 10 80 3 74 2.99e-16 74.3
MS.gene003336.t1 AT1G17310 53.165 79 35 1 8 86 47 123 3.88e-16 75.1
MS.gene003336.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.52e-16 74.3
MS.gene003336.t1 AT1G17310 53.165 79 35 1 8 86 58 134 4.61e-16 75.1
MS.gene003336.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.12e-16 74.7
MS.gene003336.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.12e-16 74.7
MS.gene003336.t1 AT1G69120 40.659 91 51 1 9 99 2 89 5.22e-16 75.1
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.28e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.28e-16 74.3
MS.gene003336.t1 AT1G28450 27.011 174 117 4 5 168 4 177 5.64e-16 73.9
MS.gene003336.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.78e-16 75.1
MS.gene003336.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.78e-16 75.1
MS.gene003336.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.78e-16 75.1
MS.gene003336.t1 AT1G77950 46.053 76 39 2 9 83 2 76 5.78e-16 75.1
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.79e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.79e-16 74.3
MS.gene003336.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.79e-16 74.3
MS.gene003336.t1 AT5G51860 52.239 67 32 0 10 76 3 69 6.07e-16 74.3
MS.gene003336.t1 AT2G22540 38.406 138 60 6 9 132 2 128 6.69e-16 74.7
MS.gene003336.t1 AT4G11880 48.611 72 36 1 10 80 3 74 6.70e-16 74.3
MS.gene003336.t1 AT4G11880 48.611 72 36 1 10 80 3 74 6.70e-16 74.3
MS.gene003336.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.99e-16 74.7
MS.gene003336.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.01e-15 74.3
MS.gene003336.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.10e-15 74.3
MS.gene003336.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.19e-15 74.3
MS.gene003336.t1 AT3G54340 38.400 125 66 5 9 122 2 126 1.22e-15 73.9
MS.gene003336.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.51e-15 73.2
MS.gene003336.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.14e-15 72.8
MS.gene003336.t1 AT5G20240 47.143 70 35 1 9 76 2 71 4.21e-15 70.5
MS.gene003336.t1 AT2G14210 46.377 69 36 1 9 76 2 70 4.56e-15 72.4
MS.gene003336.t1 AT2G14210 46.377 69 36 1 9 76 2 70 5.32e-15 72.0
MS.gene003336.t1 AT5G20240 47.143 70 35 1 9 76 2 71 6.94e-15 71.2
MS.gene003336.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.39e-14 70.1
MS.gene003336.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.47e-14 71.6
MS.gene003336.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.50e-14 71.2
MS.gene003336.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.56e-14 70.1
MS.gene003336.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.88e-14 70.9
MS.gene003336.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.36e-14 69.3
MS.gene003336.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.46e-14 70.5
MS.gene003336.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.53e-14 70.9
MS.gene003336.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.60e-14 70.5
MS.gene003336.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.71e-14 69.3
MS.gene003336.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.94e-14 68.9
MS.gene003336.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.99e-14 68.9
MS.gene003336.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.38e-14 68.9
MS.gene003336.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.61e-14 69.7
MS.gene003336.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.44e-14 68.6
MS.gene003336.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.10e-14 68.6
MS.gene003336.t1 AT1G24260 46.377 69 36 1 9 76 2 70 7.97e-14 69.3
MS.gene003336.t1 AT1G24260 46.377 69 36 1 9 76 2 70 8.23e-14 69.3
MS.gene003336.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.42e-14 69.3
MS.gene003336.t1 AT1G24260 46.377 69 36 1 9 76 2 70 8.51e-14 68.9
MS.gene003336.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.47e-14 68.9
MS.gene003336.t1 AT1G47760 33.621 116 62 3 9 123 2 103 1.11e-13 67.4
MS.gene003336.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.68e-13 67.8
MS.gene003336.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.33e-13 65.9
MS.gene003336.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.04e-13 66.2
MS.gene003336.t1 AT5G65070 28.358 201 123 8 9 189 2 201 5.48e-13 66.2
MS.gene003336.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.04e-12 65.9
MS.gene003336.t1 AT1G18750 38.667 75 44 1 9 81 2 76 3.86e-12 65.5
MS.gene003336.t1 AT1G18750 37.662 77 46 1 9 83 2 78 4.22e-12 65.5
MS.gene003336.t1 AT1G18750 38.667 75 44 1 9 81 2 76 4.55e-12 65.1
MS.gene003336.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.92e-12 63.9
MS.gene003336.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.26e-11 63.9
MS.gene003336.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.26e-11 63.9
MS.gene003336.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.63e-11 61.2
MS.gene003336.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.71e-11 61.2
MS.gene003336.t1 AT2G26320 40.000 70 40 1 9 76 18 87 3.16e-11 58.9
MS.gene003336.t1 AT2G03060 27.684 177 99 9 9 164 2 170 5.12e-11 62.0
MS.gene003336.t1 AT2G03060 27.684 177 99 9 9 164 2 170 5.12e-11 62.0
MS.gene003336.t1 AT2G03060 27.684 177 99 9 9 164 2 170 5.12e-11 62.0
MS.gene003336.t1 AT1G46408 42.857 77 40 2 10 82 5 81 5.62e-11 61.2
MS.gene003336.t1 AT2G03060 27.684 177 99 9 9 164 2 170 5.85e-11 62.0
MS.gene003336.t1 AT5G27130 40.000 85 47 2 2 82 6 90 6.96e-11 61.2
MS.gene003336.t1 AT5G65080 48.148 54 28 0 9 62 9 62 7.19e-11 60.1

Find 65 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGCTTCAACAATA+TGG 0.291497 2.4:-58969415 MS.gene003336:CDS
ATGGGCGGAGGAGGTGGATA+TGG 0.308161 2.4:-58969396 MS.gene003336:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 2.4:+58969480 None:intergenic
TTGTTGCTCATCATGCTAAT+AGG 0.316248 2.4:-58969587 MS.gene003336:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 2.4:+58969823 None:intergenic
AGGCGACTGAGACTCAATTT+TGG 0.352324 2.4:-58969686 MS.gene003336:CDS
TGGTGGGCTTGTCCCGTTGA+TGG 0.374570 2.4:-58969666 MS.gene003336:CDS
TGCTAATAGGCTTGTAATCC+AGG 0.391884 2.4:-58969574 MS.gene003336:CDS
AACAATATGGGCGGAGGAGG+TGG 0.400658 2.4:-58969402 MS.gene003336:CDS
TTGTTTGGCTTCAACAATAT+GGG 0.407022 2.4:-58969414 MS.gene003336:CDS
TCTTCTCGATGTCCAATAGT+TGG 0.408255 2.4:+58969739 None:intergenic
AACAAATGCGGTTGCAACAT+TGG 0.409051 2.4:+58969432 None:intergenic
ACAAATGCGGTTGCAACATT+GGG 0.429373 2.4:+58969433 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 2.4:-58969656 MS.gene003336:CDS
TCCCGTTGATGGGATGAATA+GGG 0.437027 2.4:-58969655 MS.gene003336:CDS
ATGTTGCAACCGCATTTGTT+TGG 0.438589 2.4:-58969429 MS.gene003336:CDS
GACTCGGATCAACCAACTAT+TGG 0.440996 2.4:-58969751 MS.gene003336:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 2.4:+58969870 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 2.4:+58969632 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 2.4:-58969625 MS.gene003336:CDS
GTGGAGGATTTGGTTGATGA+TGG 0.460225 2.4:+58969490 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 2.4:+58969654 None:intergenic
GGTGGGCTTGTCCCGTTGAT+GGG 0.493797 2.4:-58969665 MS.gene003336:CDS
TTCAACAATATGGGCGGAGG+AGG 0.500330 2.4:-58969405 MS.gene003336:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 2.4:+58969506 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 2.4:+58969869 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.516494 2.4:+58969631 None:intergenic
TCTCAGTCGCCTTGTGCAAG+TGG 0.520485 2.4:+58969697 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 2.4:+58969953 None:intergenic
GGCTTCAACAATATGGGCGG+AGG 0.534065 2.4:-58969408 MS.gene003336:CDS
CCAACTTGAATTATTCAAGA+AGG 0.535705 2.4:-58969631 MS.gene003336:CDS
GGCCCTATTCATCCCATCAA+CGG 0.536262 2.4:+58969653 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.542914 2.4:-58969387 MS.gene003336:CDS
AGGCTCGGATCAAAAGAATC+CGG 0.544225 2.4:+58969368 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.545005 2.4:-58969877 MS.gene003336:CDS
GATCGCGCACGTTGGCGCTA+CGG 0.547232 2.4:+58969787 None:intergenic
ATCTCAATACTCAGCTGACT+CGG 0.549666 2.4:-58969767 MS.gene003336:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 2.4:-58969989 MS.gene003336:CDS
AATGAAAATACCTTCTCTCC+AGG 0.563686 2.4:+58969900 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 2.4:-58969990 MS.gene003336:CDS
GATGGAAACATCTGAGCTTG+TGG 0.573604 2.4:+58969471 None:intergenic
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 2.4:-58969951 MS.gene003336:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 2.4:+58969938 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 2.4:-58970076 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 2.4:-58970080 None:intergenic
AGTATTGAGATCGCGCACGT+TGG 0.603712 2.4:+58969779 None:intergenic
GGGTTTGAGTAGGAGCACCC+TGG 0.605264 2.4:+58969556 None:intergenic
AGATCTGAGCCACTTGCACA+AGG 0.605846 2.4:-58969706 MS.gene003336:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 2.4:+58969976 None:intergenic
ATTATTCAAGAAGGCTCTGG+AGG 0.616746 2.4:-58969622 MS.gene003336:CDS
GGGTTATGATAAAACTGTGA+TGG 0.616862 2.4:+58969453 None:intergenic
TGGTACCATGCAATTCATTG+AGG 0.638950 2.4:-58969814 MS.gene003336:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 2.4:-58969834 MS.gene003336:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 2.4:+58969809 None:intergenic
GCTAATAGGCTTGTAATCCA+GGG 0.641442 2.4:-58969573 MS.gene003336:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 2.4:+58969495 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.648853 2.4:+58969371 None:intergenic
TTTGGCTTCAACAATATGGG+CGG 0.655383 2.4:-58969411 MS.gene003336:CDS
TTGTTGAAGCCAAACAAATG+CGG 0.665432 2.4:+58969420 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 2.4:+58969874 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.668804 2.4:+58969372 None:intergenic
GGAAACATCTGAGCTTGTGG+AGG 0.688544 2.4:+58969474 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 2.4:-58970065 MS.gene003336:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 2.4:+58969871 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 2.4:+58969937 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATTTCAATCTTT+TGG + chr2.4:58969409-58969428 None:intergenic 15.0%
!! CTTCTTGAATAATTCAAGTT+GGG + chr2.4:58969816-58969835 None:intergenic 25.0%
CCAACTTGAATTATTCAAGA+AGG - chr2.4:58969814-58969833 MS.gene003336:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG + chr2.4:58969817-58969836 None:intergenic 30.0%
! TTGTTTGGCTTCAACAATAT+GGG - chr2.4:58970031-58970050 MS.gene003336:CDS 30.0%
! TTTGTTTGGCTTCAACAATA+TGG - chr2.4:58970030-58970049 MS.gene003336:CDS 30.0%
AATGAAAATACCTTCTCTCC+AGG + chr2.4:58969548-58969567 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + chr2.4:58969579-58969598 None:intergenic 35.0%
GAACCGTTTCCAACAAAAAA+CGG + chr2.4:58969917-58969936 None:intergenic 35.0%
GGGTTATGATAAAACTGTGA+TGG + chr2.4:58969995-58970014 None:intergenic 35.0%
GTTTCCAACAAAAAACGGAA+GGG + chr2.4:58969912-58969931 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG + chr2.4:58969578-58969597 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG - chr2.4:58969820-58969839 MS.gene003336:CDS 35.0%
TTGTTGAAGCCAAACAAATG+CGG + chr2.4:58970028-58970047 None:intergenic 35.0%
TTGTTGCTCATCATGCTAAT+AGG - chr2.4:58969858-58969877 MS.gene003336:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr2.4:58969625-58969644 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr2.4:58969624-58969643 None:intergenic 35.0%
!!! CTTCCGTTTTTTGTTGGAAA+CGG - chr2.4:58969911-58969930 MS.gene003336:CDS 35.0%
!!! GGAGAGAAGGTATTTTCATT+TGG - chr2.4:58969548-58969567 MS.gene003336:CDS 35.0%
AAAAACGGAAGGGTTTGAGT+AGG + chr2.4:58969902-58969921 None:intergenic 40.0%
AACAAATGCGGTTGCAACAT+TGG + chr2.4:58970016-58970035 None:intergenic 40.0%
ACAAATGCGGTTGCAACATT+GGG + chr2.4:58970015-58970034 None:intergenic 40.0%
ATCTCAATACTCAGCTGACT+CGG - chr2.4:58969678-58969697 MS.gene003336:CDS 40.0%
ATGTTGCAACCGCATTTGTT+TGG - chr2.4:58970016-58970035 MS.gene003336:CDS 40.0%
CGTTTCCAACAAAAAACGGA+AGG + chr2.4:58969913-58969932 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG + chr2.4:58969577-58969596 None:intergenic 40.0%
GCTAATAGGCTTGTAATCCA+GGG - chr2.4:58969872-58969891 MS.gene003336:CDS 40.0%
TCTTCTCGATGTCCAATAGT+TGG + chr2.4:58969709-58969728 None:intergenic 40.0%
TGCTAATAGGCTTGTAATCC+AGG - chr2.4:58969871-58969890 MS.gene003336:CDS 40.0%
TGGTACCATGCAATTCATTG+AGG - chr2.4:58969631-58969650 MS.gene003336:CDS 40.0%
! ATTATTCAAGAAGGCTCTGG+AGG - chr2.4:58969823-58969842 MS.gene003336:CDS 40.0%
! TTTCAATCTTTTGGCGACCT+CGG + chr2.4:58969400-58969419 None:intergenic 40.0%
! TTTGGCTTCAACAATATGGG+CGG - chr2.4:58970034-58970053 MS.gene003336:CDS 40.0%
!! GACTGAGACTCAATTTTGGT+GGG - chr2.4:58969763-58969782 MS.gene003336:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr2.4:58969623-58969642 None:intergenic 40.0%
!!! CAAACCCTTCCGTTTTTTGT+TGG - chr2.4:58969905-58969924 MS.gene003336:CDS 40.0%
ATCTGAGCTTGTGGAGGATT+TGG + chr2.4:58969968-58969987 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr2.4:58969472-58969491 None:intergenic 45.0%
GACTCGGATCAACCAACTAT+TGG - chr2.4:58969694-58969713 MS.gene003336:CDS 45.0%
GATGGAAACATCTGAGCTTG+TGG + chr2.4:58969977-58969996 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr2.4:58969639-58969658 None:intergenic 45.0%
! AGGCGACTGAGACTCAATTT+TGG - chr2.4:58969759-58969778 MS.gene003336:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG + chr2.4:58969942-58969961 None:intergenic 45.0%
! CGACTGAGACTCAATTTTGG+TGG - chr2.4:58969762-58969781 MS.gene003336:CDS 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr2.4:58969790-58969809 MS.gene003336:CDS 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG - chr2.4:58969535-58969554 MS.gene003336:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG + chr2.4:58969953-58969972 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG + chr2.4:58969958-58969977 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr2.4:58969620-58969639 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr2.4:58969619-58969638 None:intergenic 45.0%
AGATCTGAGCCACTTGCACA+AGG - chr2.4:58969739-58969758 MS.gene003336:CDS 50.0%
AGCAACATCTGCACCACAGA+GGG + chr2.4:58969510-58969529 None:intergenic 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr2.4:58969794-58969813 None:intergenic 50.0%
GGAAACATCTGAGCTTGTGG+AGG + chr2.4:58969974-58969993 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr2.4:58969795-58969814 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG - chr2.4:58969380-58969399 MS.gene003336:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG + chr2.4:58969574-58969593 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG - chr2.4:58969568-58969587 MS.gene003336:CDS 50.0%
TTCAACAATATGGGCGGAGG+AGG - chr2.4:58970040-58970059 MS.gene003336:CDS 50.0%
! AGTATTGAGATCGCGCACGT+TGG + chr2.4:58969669-58969688 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr2.4:58969789-58969808 MS.gene003336:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr2.4:58969527-58969546 MS.gene003336:CDS 50.0%
AACAATATGGGCGGAGGAGG+TGG - chr2.4:58970043-58970062 MS.gene003336:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG - chr2.4:58969494-58969513 MS.gene003336:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr2.4:58969611-58969630 MS.gene003336:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG + chr2.4:58969511-58969530 None:intergenic 55.0%
GGCTTCAACAATATGGGCGG+AGG - chr2.4:58970037-58970056 MS.gene003336:CDS 55.0%
TCTCAGTCGCCTTGTGCAAG+TGG + chr2.4:58969751-58969770 None:intergenic 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG + chr2.4:58969495-58969514 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr2.4:58969455-58969474 MS.gene003336:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr2.4:58969456-58969475 MS.gene003336:CDS 55.0%
ATGGGCGGAGGAGGTGGATA+TGG - chr2.4:58970049-58970068 MS.gene003336:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr2.4:58970058-58970077 MS.gene003336:CDS 60.0%
! GGTGGGCTTGTCCCGTTGAT+GGG - chr2.4:58969780-58969799 MS.gene003336:CDS 60.0%
!! GGGTTTGAGTAGGAGCACCC+TGG + chr2.4:58969892-58969911 None:intergenic 60.0%
!! TGGTGGGCTTGTCCCGTTGA+TGG - chr2.4:58969779-58969798 MS.gene003336:CDS 60.0%
GATCGCGCACGTTGGCGCTA+CGG + chr2.4:58969661-58969680 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 58969377 58970090 58969377 ID=MS.gene003336
chr2.4 mRNA 58969377 58970090 58969377 ID=MS.gene003336.t1;Parent=MS.gene003336
chr2.4 exon 58969377 58970090 58969377 ID=MS.gene003336.t1.exon1;Parent=MS.gene003336.t1
chr2.4 CDS 58969377 58970090 58969377 ID=cds.MS.gene003336.t1;Parent=MS.gene003336.t1
Gene Sequence

>MS.gene003336

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAAATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGATCTCAATACTCAGCTGACTCGGATCAACCAACTATTGGACATCGAGAAGAAACGTGCTGAAGATCTGAGCCACTTGCACAAGGCGACTGAGACTCAATTTTGGTGGGCTTGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGAGGAGCTTAAGAAACTTGTTGCTCATCATGCTAATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCCTTCCGTTTTTTGTTGGAAACGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCATCACAGTTTTATCATAACCCAATGTTGCAACCGCATTTGTTTGGCTTCAACAATATGGGCGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene003336.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRDLNTQLTRINQLLDIEKKRAEDLSHLHKATETQFWWACPVDGMNRAQLELFKKALEELKKLVAHHANRLVIQGAPTQTLPFFVGNGSSSNMPLHHQPNPPQAQMFPSQFYHNPMLQPHLFGFNNMGGGGGYGPSGFF