Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004821.t1 | XP_003590816.1 | 93 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 2.20E-89 | 338.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004821.t1 | Q9ZS51 | 58.4 | 161 | 67 | 0 | 11 | 171 | 13 | 173 | 5.7e-54 | 212.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004821.t1 | G7I4T1 | 93.0 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 1.6e-89 | 338.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene004821 | MS.gene002986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004821.t1 | MTR_1g075540 | 92.982 | 171 | 12 | 0 | 1 | 171 | 1 | 171 | 5.78e-119 | 336 |
| MS.gene004821.t1 | MTR_1g075540 | 94.083 | 169 | 10 | 0 | 1 | 169 | 1 | 169 | 4.98e-118 | 333 |
| MS.gene004821.t1 | MTR_2g023850 | 56.140 | 171 | 75 | 0 | 1 | 171 | 1 | 171 | 4.94e-68 | 207 |
| MS.gene004821.t1 | MTR_8g103490 | 27.624 | 181 | 103 | 4 | 8 | 161 | 7 | 186 | 7.97e-15 | 71.2 |
| MS.gene004821.t1 | MTR_2g080040 | 29.070 | 172 | 116 | 5 | 7 | 175 | 175 | 343 | 1.16e-13 | 69.3 |
| MS.gene004821.t1 | MTR_2g090155 | 23.383 | 201 | 150 | 2 | 6 | 204 | 120 | 318 | 2.54e-12 | 65.1 |
| MS.gene004821.t1 | MTR_1g008350 | 26.738 | 187 | 109 | 6 | 9 | 168 | 5 | 190 | 3.26e-12 | 63.5 |
| MS.gene004821.t1 | MTR_2g090155 | 25.126 | 199 | 145 | 3 | 6 | 202 | 120 | 316 | 5.59e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene004821.t1 | AT4G14305 | 74.854 | 171 | 43 | 0 | 1 | 171 | 1 | 171 | 7.07e-99 | 285 |
| MS.gene004821.t1 | AT4G14305 | 76.761 | 142 | 33 | 0 | 30 | 171 | 18 | 159 | 1.57e-83 | 246 |
| MS.gene004821.t1 | AT4G04470 | 58.025 | 162 | 68 | 0 | 10 | 171 | 12 | 173 | 1.00e-69 | 211 |
| MS.gene004821.t1 | AT4G04470 | 58.025 | 162 | 68 | 0 | 10 | 171 | 12 | 173 | 1.00e-69 | 211 |
| MS.gene004821.t1 | AT5G43140 | 26.380 | 163 | 114 | 5 | 12 | 171 | 82 | 241 | 4.26e-12 | 63.9 |
| MS.gene004821.t1 | AT5G19750 | 24.138 | 174 | 128 | 4 | 12 | 184 | 118 | 288 | 2.41e-11 | 62.4 |
| MS.gene004821.t1 | AT4G03410 | 26.163 | 172 | 123 | 3 | 6 | 175 | 125 | 294 | 2.62e-11 | 62.4 |
| MS.gene004821.t1 | AT4G03410 | 26.163 | 172 | 123 | 3 | 6 | 175 | 125 | 294 | 4.27e-11 | 62.0 |
Find 47 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGTTGCACAGAAGCTTTC+TGG | 0.182029 | 1.4:-61808936 | MS.gene004821:CDS |
| CGCGCATGAAGCCATATTTC+TGG | 0.259110 | 1.4:+61805726 | None:intergenic |
| AAAGTTTATCCATCAATAAA+TGG | 0.290399 | 1.4:+61808471 | None:intergenic |
| AGAAACAGTGGCCAGAAATA+TGG | 0.341091 | 1.4:-61805737 | MS.gene004821:CDS |
| CTGGCCACTGTTTCTTGCAC+TGG | 0.344360 | 1.4:+61805745 | None:intergenic |
| ACATTATCTCCATTTATTGA+TGG | 0.376713 | 1.4:-61808480 | MS.gene004821:CDS |
| ATACCTTCCATGCCGTCAAC+TGG | 0.382299 | 1.4:+61807079 | None:intergenic |
| TTCGCCTATGCAGGACCCTT+TGG | 0.383790 | 1.4:-61808503 | MS.gene004821:CDS |
| TATTATGGCTTGATTATTGA+AGG | 0.419845 | 1.4:-61808207 | MS.gene004821:intron |
| CAATGAAACTGTTGCTAAGA+AGG | 0.429878 | 1.4:-61808432 | MS.gene004821:intron |
| GTTTACCAATTTGTAACTTG+TGG | 0.439692 | 1.4:+61805804 | None:intergenic |
| CGCGATGACGTGCAACTGCT+AGG | 0.448900 | 1.4:-61805707 | MS.gene004821:CDS |
| ATTACTTCATCAGTTCTAGC+TGG | 0.466658 | 1.4:-61808969 | MS.gene004821:CDS |
| TTGCCTCCATCTCTTATACC+AGG | 0.469694 | 1.4:+61805770 | None:intergenic |
| GGAACTGCAAAGGCATATAC+TGG | 0.477910 | 1.4:+61806934 | None:intergenic |
| CTATATGGTTTCGCCTATGC+AGG | 0.488768 | 1.4:-61808512 | MS.gene004821:CDS |
| CTACCCTACTGTCCAGTTGA+CGG | 0.495026 | 1.4:-61807091 | MS.gene004821:CDS |
| CTGACAAAGTCAACCATGCT+TGG | 0.498624 | 1.4:-61809132 | MS.gene004821:CDS |
| ACAGCTTTGTTGGTTCATGC+TGG | 0.506633 | 1.4:-61806899 | MS.gene004821:intron |
| GTTGGTTTGCAGGAAGACCT+TGG | 0.511703 | 1.4:-61807143 | MS.gene004821:intron |
| GGAGATATTTGTTCCAAGCA+TGG | 0.529142 | 1.4:+61809119 | None:intergenic |
| CATGCCGTCAACTGGACAGT+AGG | 0.531283 | 1.4:+61807087 | None:intergenic |
| AAATGGAGATAATGTCCAAA+GGG | 0.531298 | 1.4:+61808488 | None:intergenic |
| AGCAAATAACTAGTTCTCCA+TGG | 0.534969 | 1.4:-61808251 | MS.gene004821:CDS |
| CTAAGAAGCTTCAGTTCAGA+AGG | 0.536401 | 1.4:-61808911 | MS.gene004821:CDS |
| GAGAACTAGTTATTTGCTCA+AGG | 0.536726 | 1.4:+61808256 | None:intergenic |
| TGTCCAGTTGACGGCATGGA+AGG | 0.551800 | 1.4:-61807082 | MS.gene004821:intron |
| TGCCTCCATCTCTTATACCA+GGG | 0.558407 | 1.4:+61805771 | None:intergenic |
| GAGGATGAAGCTTAAGCTGA+AGG | 0.563374 | 1.4:+61809098 | None:intergenic |
| GTAGACCCTGGTATAAGAGA+TGG | 0.567628 | 1.4:-61805776 | MS.gene004821:CDS |
| GCGATGACGTGCAACTGCTA+GGG | 0.569045 | 1.4:-61805706 | MS.gene004821:CDS |
| TTGTTCATGACTATATTCCA+AGG | 0.574186 | 1.4:+61807126 | None:intergenic |
| CTACTGTCCAGTTGACGGCA+TGG | 0.576064 | 1.4:-61807086 | MS.gene004821:CDS |
| ATGTCCAAAGGGTCCTGCAT+AGG | 0.576071 | 1.4:+61808499 | None:intergenic |
| ATGCCGTCAACTGGACAGTA+GGG | 0.577736 | 1.4:+61807088 | None:intergenic |
| GCTTCATCCTCTCAGAACCA+AGG | 0.597074 | 1.4:-61809086 | MS.gene004821:intron |
| TAAATGGAGATAATGTCCAA+AGG | 0.616169 | 1.4:+61808487 | None:intergenic |
| TAATTCACCCAACCAACGAT+AGG | 0.618119 | 1.4:+61806957 | None:intergenic |
| AATAAAACACGGAACTGCAA+AGG | 0.621872 | 1.4:+61806924 | None:intergenic |
| GACCCTGGTATAAGAGATGG+AGG | 0.631844 | 1.4:-61805773 | MS.gene004821:CDS |
| AGTTACAAATTGGTAAACTG+AGG | 0.632444 | 1.4:-61805799 | MS.gene004821:CDS |
| GTTACAAATTGGTAAACTGA+GGG | 0.643022 | 1.4:-61805798 | MS.gene004821:CDS |
| ATGGTTGACTTTGTCAGACA+TGG | 0.646371 | 1.4:+61809138 | None:intergenic |
| AATGAAACCTTGGTTCTGAG+AGG | 0.655224 | 1.4:+61809079 | None:intergenic |
| CAAAGCTGTGAAATAAAACA+CGG | 0.671747 | 1.4:+61806913 | None:intergenic |
| AATGCCAGTGCAAGAAACAG+TGG | 0.687773 | 1.4:-61805749 | MS.gene004821:CDS |
| GGTAAACTGAGGGTAGACCC+TGG | 0.704214 | 1.4:-61805788 | MS.gene004821:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAACATTTAAAATTATTAC+TGG | + | chr1.4:61806069-61806088 | None:intergenic | 10.0% |
| !! | ATAATGATTATTGTAAACTT+AGG | + | chr1.4:61806973-61806992 | None:intergenic | 15.0% |
| !! | ATGATTAAGATATTATCAAT+AGG | + | chr1.4:61807583-61807602 | None:intergenic | 15.0% |
| !! | CAATTAATACTAAATATTAG+AGG | + | chr1.4:61806835-61806854 | None:intergenic | 15.0% |
| !! | GAAAACATTTATAGAATAAA+AGG | - | chr1.4:61807130-61807149 | MS.gene004821:CDS | 15.0% |
| !! | TAATGATTATTGTAAACTTA+GGG | + | chr1.4:61806972-61806991 | None:intergenic | 15.0% |
| !! | TAATGTCATATTTCTTATAA+AGG | - | chr1.4:61808113-61808132 | MS.gene004821:intron | 15.0% |
| !! | TCAAAATTATCAATGTTTAT+AGG | - | chr1.4:61806935-61806954 | MS.gene004821:CDS | 15.0% |
| !! | AAAATAGTAAAATGAAACCT+TGG | + | chr1.4:61805764-61805783 | None:intergenic | 20.0% |
| !! | AAAGTTTATCCATCAATAAA+TGG | + | chr1.4:61806362-61806381 | None:intergenic | 20.0% |
| !! | AAATAATGATTAAGCATCAT+TGG | - | chr1.4:61808031-61808050 | MS.gene004821:intron | 20.0% |
| !! | AATTTAAGAAAGTAAGGATT+TGG | + | chr1.4:61807209-61807228 | None:intergenic | 20.0% |
| !! | ATGTGAAAATGCATTATTAT+AGG | + | chr1.4:61808622-61808641 | None:intergenic | 20.0% |
| !! | GAATGAAATATCATATTACT+AGG | - | chr1.4:61806547-61806566 | MS.gene004821:intron | 20.0% |
| !! | GCAATTAAAATTCAAATTGA+GGG | + | chr1.4:61808330-61808349 | None:intergenic | 20.0% |
| !! | TCATTATTTACAAGTCAATA+TGG | - | chr1.4:61806986-61807005 | MS.gene004821:intron | 20.0% |
| !! | TGCAATTAAAATTCAAATTG+AGG | + | chr1.4:61808331-61808350 | None:intergenic | 20.0% |
| !! | TGTGAAAATGCATTATTATA+GGG | + | chr1.4:61808621-61808640 | None:intergenic | 20.0% |
| !! | TTAACATTGAATTTAATTCC+CGG | - | chr1.4:61807247-61807266 | MS.gene004821:intron | 20.0% |
| !!! | AATGTTGATCCTTTTATATT+GGG | - | chr1.4:61808159-61808178 | MS.gene004821:intron | 20.0% |
| !!! | ACATTGATAATTTTGAACTT+CGG | + | chr1.4:61806931-61806950 | None:intergenic | 20.0% |
| !!! | ATGATGCTTAATCATTATTT+TGG | + | chr1.4:61808031-61808050 | None:intergenic | 20.0% |
| !!! | GAATATTATTTTGAGTATGA+TGG | + | chr1.4:61808412-61808431 | None:intergenic | 20.0% |
| !!! | TAATGTTGATCCTTTTATAT+TGG | - | chr1.4:61808158-61808177 | MS.gene004821:intron | 20.0% |
| !!! | TCACAATTTTTACTTAATGA+AGG | + | chr1.4:61808266-61808285 | None:intergenic | 20.0% |
| !!! | TGTATCTAGTTTCAATATTT+TGG | - | chr1.4:61808556-61808575 | MS.gene004821:intron | 20.0% |
| !!! | TTTTTGTTCATGATGTATTA+TGG | - | chr1.4:61806608-61806627 | MS.gene004821:intron | 20.0% |
| ! | AATGCATATTATGTATAACC+AGG | + | chr1.4:61808368-61808387 | None:intergenic | 25.0% |
| ! | ACAGATAAATCATATTAGTC+GGG | + | chr1.4:61808744-61808763 | None:intergenic | 25.0% |
| ! | ACATTATCTCCATTTATTGA+TGG | - | chr1.4:61806350-61806369 | MS.gene004821:intron | 25.0% |
| ! | ATCATTAATCTTCTTCTGTT+TGG | - | chr1.4:61807780-61807799 | MS.gene004821:intron | 25.0% |
| ! | CAATCATATATTCATACTAG+TGG | + | chr1.4:61808813-61808832 | None:intergenic | 25.0% |
| ! | CACAGATAAATCATATTAGT+CGG | + | chr1.4:61808745-61808764 | None:intergenic | 25.0% |
| ! | CAGAACAATTTAAGAAAGTA+AGG | + | chr1.4:61807215-61807234 | None:intergenic | 25.0% |
| ! | CATGCACTATAAATTACAAA+AGG | - | chr1.4:61808080-61808099 | MS.gene004821:intron | 25.0% |
| ! | CTATAAGAATGATTGTTAGT+AGG | - | chr1.4:61808776-61808795 | MS.gene004821:intron | 25.0% |
| ! | CTATTTATTCCTATAACCAA+AGG | + | chr1.4:61806457-61806476 | None:intergenic | 25.0% |
| ! | GATGAAGTAGAAGTTATTAT+AGG | - | chr1.4:61806233-61806252 | MS.gene004821:intron | 25.0% |
| ! | GTTCGCAATATCATATATTA+AGG | + | chr1.4:61807101-61807120 | None:intergenic | 25.0% |
| ! | TATTATGGCTTGATTATTGA+AGG | - | chr1.4:61806623-61806642 | MS.gene004821:intron | 25.0% |
| ! | TTAAGATATTATCAATAGGC+TGG | + | chr1.4:61807579-61807598 | None:intergenic | 25.0% |
| ! | TTACCTTACAAGTATATCAA+GGG | - | chr1.4:61807175-61807194 | MS.gene004821:intron | 25.0% |
| !! | TAGATGAAGTTTAAGCTTTT+TGG | - | chr1.4:61807496-61807515 | MS.gene004821:intron | 25.0% |
| !! | TGTAACTTGTAAAGTTGTAA+TGG | - | chr1.4:61806754-61806773 | MS.gene004821:intron | 25.0% |
| !! | TTTTCATAAAACAAGTACCA+GGG | + | chr1.4:61806519-61806538 | None:intergenic | 25.0% |
| !! | TTTTTCATAAAACAAGTACC+AGG | + | chr1.4:61806520-61806539 | None:intergenic | 25.0% |
| !!! | ATCTAGTTTCAATATTTTGG+AGG | - | chr1.4:61808559-61808578 | MS.gene004821:intron | 25.0% |
| !!! | ATTGATGGATAAACTTTTCA+AGG | - | chr1.4:61806365-61806384 | MS.gene004821:intron | 25.0% |
| !!! | CAAATTATTTTGCAGCTATA+TGG | - | chr1.4:61806303-61806322 | MS.gene004821:intron | 25.0% |
| !!! | CAGTTTGAATAGTTAGTTTT+TGG | - | chr1.4:61807812-61807831 | MS.gene004821:intron | 25.0% |
| !!! | GAAGTTATTATAGGTTGATT+TGG | - | chr1.4:61806242-61806261 | MS.gene004821:intron | 25.0% |
| !!! | TGAATTTTAATTGCACCATA+AGG | - | chr1.4:61808336-61808355 | MS.gene004821:intron | 25.0% |
| !!! | TTGATGGATAAACTTTTCAA+GGG | - | chr1.4:61806366-61806385 | MS.gene004821:intron | 25.0% |
| AAATGGAGATAATGTCCAAA+GGG | + | chr1.4:61806345-61806364 | None:intergenic | 30.0% | |
| AACCAAACTGAAATAGTGAA+GGG | - | chr1.4:61807386-61807405 | MS.gene004821:intron | 30.0% | |
| AACTATTCAAACTGTTCCAT+TGG | + | chr1.4:61807806-61807825 | None:intergenic | 30.0% | |
| AATCCATTAGTGAGAAAAAG+AGG | - | chr1.4:61808895-61808914 | MS.gene004821:intron | 30.0% | |
| AATGATTAAGCATCATTGGT+TGG | - | chr1.4:61808035-61808054 | MS.gene004821:intron | 30.0% | |
| AGGATATTTCATTCTCTACT+AGG | - | chr1.4:61808579-61808598 | MS.gene004821:intron | 30.0% | |
| AGTTACAAATTGGTAAACTG+AGG | - | chr1.4:61809031-61809050 | MS.gene004821:intron | 30.0% | |
| ATCACAATATAGTTGAAAGC+CGG | + | chr1.4:61808186-61808205 | None:intergenic | 30.0% | |
| ATGAACAAAAAGTTGTTCCA+TGG | + | chr1.4:61806599-61806618 | None:intergenic | 30.0% | |
| CAAAGCTGTGAAATAAAACA+CGG | + | chr1.4:61807920-61807939 | None:intergenic | 30.0% | |
| CGACTAATATGATTTATCTG+TGG | - | chr1.4:61808743-61808762 | MS.gene004821:intron | 30.0% | |
| CTTACCTTACAAGTATATCA+AGG | - | chr1.4:61807174-61807193 | MS.gene004821:intron | 30.0% | |
| GCATTATTATAGGGAAAAGA+TGG | + | chr1.4:61808612-61808631 | None:intergenic | 30.0% | |
| GTTACAAATTGGTAAACTGA+GGG | - | chr1.4:61809032-61809051 | MS.gene004821:intron | 30.0% | |
| GTTTACCAATTTGTAACTTG+TGG | + | chr1.4:61809029-61809048 | None:intergenic | 30.0% | |
| TAAATGGAGATAATGTCCAA+AGG | + | chr1.4:61806346-61806365 | None:intergenic | 30.0% | |
| TGATTTATGATCATTGTCTG+TGG | - | chr1.4:61808465-61808484 | MS.gene004821:CDS | 30.0% | |
| TTCTGCTTAATTCCTAACTT+TGG | - | chr1.4:61806863-61806882 | MS.gene004821:intron | 30.0% | |
| TTGTTCATGACTATATTCCA+AGG | + | chr1.4:61807707-61807726 | None:intergenic | 30.0% | |
| ! | AAAAGTTTTGCACCGAAATT+TGG | + | chr1.4:61807060-61807079 | None:intergenic | 30.0% |
| ! | AAAGTTTTGCACCGAAATTT+GGG | + | chr1.4:61807059-61807078 | None:intergenic | 30.0% |
| ! | GAATGTCAATTCTGTTTTCT+TGG | + | chr1.4:61806813-61806832 | None:intergenic | 30.0% |
| ! | GTTTTCCACAAGTTACAAAT+TGG | - | chr1.4:61809021-61809040 | MS.gene004821:intron | 30.0% |
| ! | TTAATTCCTAACTTTGGTTC+TGG | - | chr1.4:61806869-61806888 | MS.gene004821:intron | 30.0% |
| !! | CTCACTAATGGATTAAATCA+TGG | + | chr1.4:61808889-61808908 | None:intergenic | 30.0% |
| !! | GTTATTATAGGTTGATTTGG+TGG | - | chr1.4:61806245-61806264 | MS.gene004821:intron | 30.0% |
| !! | TGATGGATAAACTTTTCAAG+GGG | - | chr1.4:61806367-61806386 | MS.gene004821:intron | 30.0% |
| !! | TGTGTGTGTTTTGTTATGTT+AGG | - | chr1.4:61805836-61805855 | MS.gene004821:intron | 30.0% |
| !!! | ATTTTAATTGCACCATAAGG+TGG | - | chr1.4:61808339-61808358 | MS.gene004821:intron | 30.0% |
| !!! | GTTTTATTTCACAGCTTTGT+TGG | - | chr1.4:61807921-61807940 | MS.gene004821:intron | 30.0% |
| AATAAAACACGGAACTGCAA+AGG | + | chr1.4:61807909-61807928 | None:intergenic | 35.0% | |
| ACATCTTGGTTATAGTATGC+TGG | + | chr1.4:61808942-61808961 | None:intergenic | 35.0% | |
| ACATTGAATTTAATTCCCGG+AGG | - | chr1.4:61807250-61807269 | MS.gene004821:intron | 35.0% | |
| AGACCCTTGATATACTTGTA+AGG | + | chr1.4:61807181-61807200 | None:intergenic | 35.0% | |
| AGACCTTCTATCCCAAATTT+CGG | - | chr1.4:61807045-61807064 | MS.gene004821:intron | 35.0% | |
| AGCATACTATAACCAAGATG+TGG | - | chr1.4:61808941-61808960 | MS.gene004821:CDS | 35.0% | |
| ATAGTACCAGAACCAAAGTT+AGG | + | chr1.4:61806878-61806897 | None:intergenic | 35.0% | |
| ATTGTGTGTACTATGTCCTT+TGG | - | chr1.4:61806438-61806457 | MS.gene004821:intron | 35.0% | |
| CAATGAAACTGTTGCTAAGA+AGG | - | chr1.4:61806398-61806417 | MS.gene004821:intron | 35.0% | |
| CAGTACAACTATACACGATT+TGG | + | chr1.4:61808447-61808466 | None:intergenic | 35.0% | |
| GAACCAAACTGAAATAGTGA+AGG | - | chr1.4:61807385-61807404 | MS.gene004821:intron | 35.0% | |
| GAGAACTAGTTATTTGCTCA+AGG | + | chr1.4:61806577-61806596 | None:intergenic | 35.0% | |
| GTACTATGTCCTTTGGTTAT+AGG | - | chr1.4:61806445-61806464 | MS.gene004821:intron | 35.0% | |
| GTCAGTACATGTACATCATT+AGG | - | chr1.4:61808209-61808228 | MS.gene004821:CDS | 35.0% | |
| TAACCAACATAAGTCACCAT+CGG | - | chr1.4:61808696-61808715 | MS.gene004821:intron | 35.0% | |
| TCAAAATTAAAGCGTGAGGT+TGG | - | chr1.4:61807669-61807688 | MS.gene004821:intron | 35.0% | |
| TGATTGTTAGTAGGAAGAGA+AGG | - | chr1.4:61808785-61808804 | MS.gene004821:intron | 35.0% | |
| TGCTTCAAAATTAAAGCGTG+AGG | - | chr1.4:61807665-61807684 | MS.gene004821:intron | 35.0% | |
| ! | AGCAAATAACTAGTTCTCCA+TGG | - | chr1.4:61806579-61806598 | MS.gene004821:intron | 35.0% |
| ! | ATGCCTCCAATCAAAAGTAT+CGG | - | chr1.4:61806126-61806145 | MS.gene004821:intron | 35.0% |
| ! | ATGCCTCTTTTTCTCACTAA+TGG | + | chr1.4:61808901-61808920 | None:intergenic | 35.0% |
| ! | ATTACTTCATCAGTTCTAGC+TGG | - | chr1.4:61805861-61805880 | MS.gene004821:intron | 35.0% |
| ! | ATTCTGTTTTCTTGGTAGAG+AGG | + | chr1.4:61806805-61806824 | None:intergenic | 35.0% |
| ! | CAGAAGGATTCTTCTTTTCA+TGG | - | chr1.4:61805935-61805954 | MS.gene004821:intron | 35.0% |
| ! | GTATTTTGTGTTGTGTGATC+AGG | - | chr1.4:61806476-61806495 | MS.gene004821:intron | 35.0% |
| ! | TCTTGACTTTTGTCAAGTAC+TGG | - | chr1.4:61808505-61808524 | MS.gene004821:CDS | 35.0% |
| ! | TGAGTATGATGGAATAGTCT+CGG | + | chr1.4:61808401-61808420 | None:intergenic | 35.0% |
| ! | TGATCCTTTTATATTGGGTC+CGG | - | chr1.4:61808164-61808183 | MS.gene004821:intron | 35.0% |
| ! | TGGTGGTAGTTGAATTTTGA+AGG | - | chr1.4:61806262-61806281 | MS.gene004821:intron | 35.0% |
| ! | TTTGAAGCACTATGCAATGA+AGG | + | chr1.4:61807654-61807673 | None:intergenic | 35.0% |
| !! | AAACTTTTCAAGGGGAAGAA+AGG | - | chr1.4:61806375-61806394 | MS.gene004821:intron | 35.0% |
| !! | AGTTGAATTTTGAAGGTCTG+TGG | - | chr1.4:61806269-61806288 | MS.gene004821:intron | 35.0% |
| !! | CTTGTGGAAAACTGTTTTAG+TGG | + | chr1.4:61809013-61809032 | None:intergenic | 35.0% |
| !! | GCTGATTTTTACTCACAGAA+TGG | - | chr1.4:61807538-61807557 | MS.gene004821:intron | 35.0% |
| !! | GTTGATAGTACTGTGAGTAT+AGG | - | chr1.4:61808057-61808076 | MS.gene004821:intron | 35.0% |
| !! | TAGGCTGGAATTGTTTTATG+AGG | + | chr1.4:61807564-61807583 | None:intergenic | 35.0% |
| !!! | ATAGCACCGATACTTTTGAT+TGG | + | chr1.4:61806135-61806154 | None:intergenic | 35.0% |
| AAAGCCGGACCCAATATAAA+AGG | + | chr1.4:61808171-61808190 | None:intergenic | 40.0% | |
| AACCAACATAAGTCACCATC+GGG | - | chr1.4:61808697-61808716 | MS.gene004821:intron | 40.0% | |
| AGAAACAGTGGCCAGAAATA+TGG | - | chr1.4:61809093-61809112 | MS.gene004821:CDS | 40.0% | |
| ATAACCAGGTAACCACCTTA+TGG | + | chr1.4:61808354-61808373 | None:intergenic | 40.0% | |
| ATCTTCTTCTGTTTGGCCAA+TGG | - | chr1.4:61807787-61807806 | MS.gene004821:intron | 40.0% | |
| CTAAGAAGCTTCAGTTCAGA+AGG | - | chr1.4:61805919-61805938 | MS.gene004821:intron | 40.0% | |
| GAAACAAGTTTGACAACGCT+AGG | - | chr1.4:61808649-61808668 | MS.gene004821:intron | 40.0% | |
| GACCCTTCACTATTTCAGTT+TGG | + | chr1.4:61807391-61807410 | None:intergenic | 40.0% | |
| GGAGATATTTGTTCCAAGCA+TGG | + | chr1.4:61805714-61805733 | None:intergenic | 40.0% | |
| TAAAACAAGTACCAGGGCTA+AGG | + | chr1.4:61806513-61806532 | None:intergenic | 40.0% | |
| TAATTCACCCAACCAACGAT+AGG | + | chr1.4:61807876-61807895 | None:intergenic | 40.0% | |
| TGCATTTGTCTTCCACATCT+TGG | + | chr1.4:61808956-61808975 | None:intergenic | 40.0% | |
| TTAGGCCACTAAGATTGCTT+TGG | - | chr1.4:61808227-61808246 | MS.gene004821:CDS | 40.0% | |
| TTCCTTATATTGCTCTCCTC+CGG | + | chr1.4:61807269-61807288 | None:intergenic | 40.0% | |
| TTGTGAAGATGCATGCAATG+TGG | - | chr1.4:61808280-61808299 | MS.gene004821:intron | 40.0% | |
| ! | ACGATTGTAACTTGCATCTC+AGG | - | chr1.4:61808980-61808999 | MS.gene004821:intron | 40.0% |
| ! | ATGGTGAATTCTTTTCCCAC+TGG | + | chr1.4:61808870-61808889 | None:intergenic | 40.0% |
| ! | GTCTTTTGAACGTGCAGTTT+TGG | - | chr1.4:61807850-61807869 | MS.gene004821:intron | 40.0% |
| ! | TGTTTTCTTGGTAGAGAGGT+GGG | + | chr1.4:61806801-61806820 | None:intergenic | 40.0% |
| ! | TTCTATGTTTTCCTTAGCCC+TGG | - | chr1.4:61806499-61806518 | MS.gene004821:intron | 40.0% |
| !! | AATGAAACCTTGGTTCTGAG+AGG | + | chr1.4:61805754-61805773 | None:intergenic | 40.0% |
| !! | CTTTTGATTGGAGGCATGTT+TGG | + | chr1.4:61806123-61806142 | None:intergenic | 40.0% |
| AATGCCAGTGCAAGAAACAG+TGG | - | chr1.4:61809081-61809100 | MS.gene004821:intron | 45.0% | |
| CTATATGGTTTCGCCTATGC+AGG | - | chr1.4:61806318-61806337 | MS.gene004821:intron | 45.0% | |
| CTGACAAAGTCAACCATGCT+TGG | - | chr1.4:61805698-61805717 | MS.gene004821:CDS | 45.0% | |
| GACAGCCAAAGCAATCTTAG+TGG | + | chr1.4:61808235-61808254 | None:intergenic | 45.0% | |
| GAGGATGAAGCTTAAGCTGA+AGG | + | chr1.4:61805735-61805754 | None:intergenic | 45.0% | |
| GTAGACCCTGGTATAAGAGA+TGG | - | chr1.4:61809054-61809073 | MS.gene004821:intron | 45.0% | |
| TCCTTATATTGCTCTCCTCC+GGG | + | chr1.4:61807268-61807287 | None:intergenic | 45.0% | |
| TGCCTCCATCTCTTATACCA+GGG | + | chr1.4:61809062-61809081 | None:intergenic | 45.0% | |
| TTGCCTCCATCTCTTATACC+AGG | + | chr1.4:61809063-61809082 | None:intergenic | 45.0% | |
| ! | CTGTTTTCTTGGTAGAGAGG+TGG | + | chr1.4:61806802-61806821 | None:intergenic | 45.0% |
| ! | GCACCGAAATTTGGGATAGA+AGG | + | chr1.4:61807051-61807070 | None:intergenic | 45.0% |
| ! | GGAACTGCAAAGGCATATAC+TGG | + | chr1.4:61807899-61807918 | None:intergenic | 45.0% |
| !! | ACAGCTTTGTTGGTTCATGC+TGG | - | chr1.4:61807931-61807950 | MS.gene004821:intron | 45.0% |
| !! | AGTTTTGGCCTATCGTTGGT+TGG | - | chr1.4:61807865-61807884 | MS.gene004821:intron | 45.0% |
| !! | GCACCGATACTTTTGATTGG+AGG | + | chr1.4:61806132-61806151 | None:intergenic | 45.0% |
| !! | GTTTTGGCCTATCGTTGGTT+GGG | - | chr1.4:61807866-61807885 | MS.gene004821:intron | 45.0% |
| ATACCTTCCATGCCGTCAAC+TGG | + | chr1.4:61807754-61807773 | None:intergenic | 50.0% | |
| ATGCCGTCAACTGGACAGTA+GGG | + | chr1.4:61807745-61807764 | None:intergenic | 50.0% | |
| ATGTCCAAAGGGTCCTGCAT+AGG | + | chr1.4:61806334-61806353 | None:intergenic | 50.0% | |
| CACCCGATGGTGACTTATGT+TGG | + | chr1.4:61808702-61808721 | None:intergenic | 50.0% | |
| CGCGCATGAAGCCATATTTC+TGG | + | chr1.4:61809107-61809126 | None:intergenic | 50.0% | |
| CTACCCTACTGTCCAGTTGA+CGG | - | chr1.4:61807739-61807758 | MS.gene004821:intron | 50.0% | |
| GACCCTGGTATAAGAGATGG+AGG | - | chr1.4:61809057-61809076 | MS.gene004821:intron | 50.0% | |
| GCGAACATCAGACACGACAA+TGG | - | chr1.4:61806024-61806043 | MS.gene004821:intron | 50.0% | |
| GCTGTTGCACAGAAGCTTTC+TGG | - | chr1.4:61805894-61805913 | MS.gene004821:intron | 50.0% | |
| GCTTCATCCTCTCAGAACCA+AGG | - | chr1.4:61805744-61805763 | MS.gene004821:CDS | 50.0% | |
| TCCCGGAGGAGAGCAATATA+AGG | - | chr1.4:61807264-61807283 | MS.gene004821:intron | 50.0% | |
| TGCACCATAAGGTGGTTACC+TGG | - | chr1.4:61808347-61808366 | MS.gene004821:intron | 50.0% | |
| TTTCCCACTGGCGATCATTG+AGG | + | chr1.4:61808858-61808877 | None:intergenic | 50.0% | |
| !! | AAAGCGTGAGGTTGGTTTGC+AGG | - | chr1.4:61807677-61807696 | MS.gene004821:intron | 50.0% |
| !! | GGTGGGTTACACAACACAAG+AGG | + | chr1.4:61806784-61806803 | None:intergenic | 50.0% |
| !! | GTGCAGTTTTGGCCTATCGT+TGG | - | chr1.4:61807861-61807880 | MS.gene004821:intron | 50.0% |
| !! | GTTGGTTTGCAGGAAGACCT+TGG | - | chr1.4:61807687-61807706 | MS.gene004821:intron | 50.0% |
| !! | TTTGGTGCTCGACACGACAA+TGG | + | chr1.4:61806105-61806124 | None:intergenic | 50.0% |
| ACCACCTCAATGATCGCCAG+TGG | - | chr1.4:61808851-61808870 | MS.gene004821:intron | 55.0% | |
| CACCATCGGGTGATTGTCGA+CGG | - | chr1.4:61808710-61808729 | MS.gene004821:intron | 55.0% | |
| CATGCCGTCAACTGGACAGT+AGG | + | chr1.4:61807746-61807765 | None:intergenic | 55.0% | |
| CCACCTCAATGATCGCCAGT+GGG | - | chr1.4:61808852-61808871 | MS.gene004821:intron | 55.0% | |
| CTACTGTCCAGTTGACGGCA+TGG | - | chr1.4:61807744-61807763 | MS.gene004821:intron | 55.0% | |
| GCGATGACGTGCAACTGCTA+GGG | - | chr1.4:61809124-61809143 | MS.gene004821:CDS | 55.0% | |
| GGTAAACTGAGGGTAGACCC+TGG | - | chr1.4:61809042-61809061 | MS.gene004821:intron | 55.0% | |
| TACCGTCGACAATCACCCGA+TGG | + | chr1.4:61808715-61808734 | None:intergenic | 55.0% | |
| TGTCCAGTTGACGGCATGGA+AGG | - | chr1.4:61807748-61807767 | MS.gene004821:intron | 55.0% | |
| TTCGCCTATGCAGGACCCTT+TGG | - | chr1.4:61806327-61806346 | MS.gene004821:intron | 55.0% | |
| ! | CTGGCCACTGTTTCTTGCAC+TGG | + | chr1.4:61809088-61809107 | None:intergenic | 55.0% |
| CCCACTGGCGATCATTGAGG+TGG | + | chr1.4:61808855-61808874 | None:intergenic | 60.0% | |
| CGCGATGACGTGCAACTGCT+AGG | - | chr1.4:61809123-61809142 | MS.gene004821:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 61805694 | 61809158 | 61805694 | ID=MS.gene004821 |
| chr1.4 | mRNA | 61805694 | 61809158 | 61805694 | ID=MS.gene004821.t1;Parent=MS.gene004821 |
| chr1.4 | exon | 61809087 | 61809158 | 61809087 | ID=MS.gene004821.t1.exon1;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61809087 | 61809158 | 61809087 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| chr1.4 | exon | 61808896 | 61808994 | 61808896 | ID=MS.gene004821.t1.exon2;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61808896 | 61808994 | 61808896 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| chr1.4 | exon | 61808433 | 61808534 | 61808433 | ID=MS.gene004821.t1.exon3;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61808433 | 61808534 | 61808433 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| chr1.4 | exon | 61808208 | 61808283 | 61808208 | ID=MS.gene004821.t1.exon4;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61808208 | 61808283 | 61808208 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| chr1.4 | exon | 61807083 | 61807153 | 61807083 | ID=MS.gene004821.t1.exon5;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61807083 | 61807153 | 61807083 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| chr1.4 | exon | 61806900 | 61806985 | 61806900 | ID=MS.gene004821.t1.exon6;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61806900 | 61806985 | 61806900 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| chr1.4 | exon | 61805694 | 61805850 | 61805694 | ID=MS.gene004821.t1.exon7;Parent=MS.gene004821.t1 |
| chr1.4 | CDS | 61805694 | 61805850 | 61805694 | ID=cds.MS.gene004821.t1;Parent=MS.gene004821.t1 |
| Gene Sequence |
| Protein sequence |
