Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002986.t1 | XP_013462864.1 | 98.9 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 1.70E-98 | 368.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002986.t1 | Q9ZS51 | 68.9 | 177 | 55 | 0 | 6 | 182 | 8 | 184 | 4.8e-70 | 265.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002986.t1 | I3SQE0 | 98.9 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 1.2e-98 | 368.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002986 | MS.gene71436 | PPI |
| MS.gene004821 | MS.gene002986 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002986.t1 | MTR_2g023850 | 98.919 | 185 | 2 | 0 | 1 | 185 | 1 | 185 | 9.80e-133 | 369 |
| MS.gene002986.t1 | MTR_1g075540 | 56.425 | 179 | 78 | 0 | 1 | 179 | 1 | 179 | 2.96e-75 | 224 |
| MS.gene002986.t1 | MTR_1g075540 | 55.030 | 169 | 76 | 0 | 1 | 169 | 1 | 169 | 5.34e-69 | 207 |
| MS.gene002986.t1 | MTR_6g038540 | 28.859 | 149 | 102 | 3 | 12 | 158 | 56 | 202 | 7.77e-16 | 73.2 |
| MS.gene002986.t1 | MTR_1g008350 | 24.064 | 187 | 117 | 4 | 12 | 174 | 8 | 193 | 5.56e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene002986.t1 | AT4G04470 | 67.935 | 184 | 57 | 1 | 1 | 182 | 1 | 184 | 1.42e-92 | 268 |
| MS.gene002986.t1 | AT4G04470 | 67.935 | 184 | 57 | 1 | 1 | 182 | 1 | 184 | 1.42e-92 | 268 |
| MS.gene002986.t1 | AT4G14305 | 58.101 | 179 | 75 | 0 | 1 | 179 | 1 | 179 | 3.89e-79 | 234 |
| MS.gene002986.t1 | AT4G14305 | 58.278 | 151 | 63 | 0 | 29 | 179 | 17 | 167 | 2.17e-66 | 201 |
| MS.gene002986.t1 | AT5G43140 | 28.571 | 168 | 116 | 3 | 12 | 177 | 82 | 247 | 1.98e-20 | 85.9 |
| MS.gene002986.t1 | AT5G19750 | 27.119 | 177 | 125 | 4 | 9 | 184 | 115 | 288 | 5.95e-18 | 79.7 |
| MS.gene002986.t1 | AT3G24570 | 23.116 | 199 | 116 | 3 | 12 | 174 | 8 | 205 | 2.43e-13 | 66.2 |
| MS.gene002986.t1 | AT4G33905 | 23.295 | 176 | 127 | 4 | 12 | 183 | 86 | 257 | 6.19e-11 | 60.1 |
Find 36 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGGAGCTGGTTATCT+TGG | 0.238729 | 2.2:-62049878 | MS.gene002986:CDS |
| GCTGGTTATCTTGGACCATT+TGG | 0.274456 | 2.2:-62049869 | MS.gene002986:CDS |
| GCACTACTTTCATATAATAC+TGG | 0.340075 | 2.2:-62049846 | MS.gene002986:CDS |
| ATAGTGTCTCAGAAGCTTAC+TGG | 0.346392 | 2.2:-62051320 | MS.gene002986:CDS |
| CTGGTTATCTTGGACCATTT+GGG | 0.358377 | 2.2:-62049868 | MS.gene002986:CDS |
| ATTACTGCTGGTGTGTTGTC+AGG | 0.361890 | 2.2:-62051353 | MS.gene002986:CDS |
| TGACATTGACTAAATCTTGA+TGG | 0.362487 | 2.2:-62047815 | None:intergenic |
| CTGCAGTTCTGGCCTGTTGT+TGG | 0.379349 | 2.2:-62048166 | MS.gene002986:intron |
| TGCAGTTCTGGCCTGTTGTT+GGG | 0.379471 | 2.2:-62048165 | MS.gene002986:intron |
| TACTATGGATTGGTTATTGA+AGG | 0.391033 | 2.2:-62049300 | MS.gene002986:intron |
| TAATTTATCCACCCAACAAC+AGG | 0.412614 | 2.2:+62048154 | None:intergenic |
| CAAAAGACTTCTTCTTAAAG+TGG | 0.417508 | 2.2:-62051279 | MS.gene002986:intron |
| ACAGCTTAGTAGCATTTGTC+TGG | 0.437917 | 2.2:-62048096 | MS.gene002986:intron |
| TGGATGCAGCTTCTTGGAGC+TGG | 0.445936 | 2.2:-62049887 | MS.gene002986:intron |
| ATGGGTTCTGTTGCAAAGAA+TGG | 0.448957 | 2.2:-62051649 | MS.gene002986:CDS |
| TGTGAAAGCTAGAGTGAAGA+AGG | 0.449767 | 2.2:-62048344 | MS.gene002986:CDS |
| AGTGGACTGCAGGCCAACCT+TGG | 0.468070 | 2.2:-62048372 | MS.gene002986:intron |
| TTTCATGATATACTATGGAT+TGG | 0.471729 | 2.2:-62049310 | MS.gene002986:CDS |
| CATGATGCTTTCTGCACTGA+TGG | 0.489068 | 2.2:+62048316 | None:intergenic |
| ATATGAAAGTAGTGCCCAAA+TGG | 0.492095 | 2.2:+62049854 | None:intergenic |
| AAGATGTCAACTGTTCAATC+AGG | 0.510636 | 2.2:+62049352 | None:intergenic |
| GTGGACTGCAGGCCAACCTT+GGG | 0.519315 | 2.2:-62048371 | MS.gene002986:intron |
| CTTTCACATTCACCCAAGGT+TGG | 0.536243 | 2.2:+62048359 | None:intergenic |
| GTAAAACAGGTCATTACTGC+TGG | 0.546193 | 2.2:-62051365 | MS.gene002986:intron |
| ATGAAAATCAAATTGTTCAA+AGG | 0.546395 | 2.2:+62049327 | None:intergenic |
| CATCAGTGCAGAAAGCATCA+TGG | 0.557769 | 2.2:-62048315 | MS.gene002986:CDS |
| TTACTGCTGGTGTGTTGTCA+GGG | 0.558027 | 2.2:-62051352 | MS.gene002986:CDS |
| AAACATACCTTGGTTCTCAA+AGG | 0.575084 | 2.2:+62051592 | None:intergenic |
| CTAGCTTTCACATTCACCCA+AGG | 0.576629 | 2.2:+62048355 | None:intergenic |
| GTGAAAGCTAGAGTGAAGAA+GGG | 0.594799 | 2.2:-62048343 | MS.gene002986:CDS |
| AGTTCTGGCCTGTTGTTGGG+TGG | 0.605028 | 2.2:-62048162 | MS.gene002986:CDS |
| AGAACATCCTTTGAGAACCA+AGG | 0.613976 | 2.2:-62051599 | MS.gene002986:intron |
| AGACAAATGCTACTAAGCTG+TGG | 0.616134 | 2.2:+62048098 | None:intergenic |
| AAAACAACACGGAAATGAAG+AGG | 0.640824 | 2.2:+62048121 | None:intergenic |
| CTAAGCTGTGGAAAACAACA+CGG | 0.662691 | 2.2:+62048110 | None:intergenic |
| AGTGCAGAAAGCATCATGGA+CGG | 0.692696 | 2.2:-62048311 | MS.gene002986:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATAAATATATATGCATT+AGG | - | chr2.2:62049534-62049553 | MS.gene002986:intron | 10.0% |
| !!! | ATCAATTTTAAAATGTAATT+TGG | - | chr2.2:62050793-62050812 | MS.gene002986:intron | 10.0% |
| !! | AAATAAATTACTAGTTGAAT+AGG | + | chr2.2:62050333-62050352 | None:intergenic | 15.0% |
| !! | ATTCAAATTGAAAAACAAAA+TGG | + | chr2.2:62048226-62048245 | None:intergenic | 15.0% |
| !! | TAAAAAATGAATTATAGTGT+TGG | - | chr2.2:62048422-62048441 | MS.gene002986:intron | 15.0% |
| !! | TACAATAATTGTAAAAGAAA+TGG | + | chr2.2:62049403-62049422 | None:intergenic | 15.0% |
| !! | TATTTATATATAGCAACAAA+AGG | + | chr2.2:62049518-62049537 | None:intergenic | 15.0% |
| !! | TTATGTATATAATGAAAAAG+TGG | - | chr2.2:62051077-62051096 | MS.gene002986:intron | 15.0% |
| !!! | AAAATTTCTTTTGATGATTT+TGG | - | chr2.2:62049099-62049118 | MS.gene002986:intron | 15.0% |
| !!! | AAGTAGATTTTTTTTATACA+AGG | + | chr2.2:62047972-62047991 | None:intergenic | 15.0% |
| !!! | AGTAGATTTTTTTTATACAA+GGG | + | chr2.2:62047971-62047990 | None:intergenic | 15.0% |
| !!! | CATGTTAAAATATTTTTTTG+AGG | - | chr2.2:62048876-62048895 | MS.gene002986:intron | 15.0% |
| !!! | CTCAAAAAAATATTTTAACA+TGG | + | chr2.2:62048878-62048897 | None:intergenic | 15.0% |
| !!! | TCTTTGATTTTTTTTTTTTC+AGG | - | chr2.2:62050091-62050110 | MS.gene002986:intron | 15.0% |
| !!! | TGATTAAAATCAAATGTTTT+TGG | + | chr2.2:62050898-62050917 | None:intergenic | 15.0% |
| !!! | TTTTAAAATGTAATTTGGAA+TGG | - | chr2.2:62050798-62050817 | MS.gene002986:intron | 15.0% |
| !! | AAACATGGAATGTATAATAA+GGG | + | chr2.2:62047935-62047954 | None:intergenic | 20.0% |
| !! | AAATGAAGAATGTGAAAATT+AGG | + | chr2.2:62048077-62048096 | None:intergenic | 20.0% |
| !! | AATTGAATTTGTAGTGTTAA+AGG | - | chr2.2:62048277-62048296 | MS.gene002986:intron | 20.0% |
| !! | AGTACTATATTATTAAGGAT+GGG | - | chr2.2:62049192-62049211 | MS.gene002986:intron | 20.0% |
| !! | ATGAAAATCAAATTGTTCAA+AGG | + | chr2.2:62050143-62050162 | None:intergenic | 20.0% |
| !! | ATGGAAATACTTAAAAATTC+AGG | - | chr2.2:62049832-62049851 | MS.gene002986:CDS | 20.0% |
| !! | ATTGAATTTGTAGTGTTAAA+GGG | - | chr2.2:62048278-62048297 | MS.gene002986:intron | 20.0% |
| !! | ATTTCCATTTATGTGTAAAA+TGG | - | chr2.2:62051039-62051058 | MS.gene002986:intron | 20.0% |
| !! | GAGATAGTACTATATTATTA+AGG | - | chr2.2:62049187-62049206 | MS.gene002986:intron | 20.0% |
| !! | TAATAGTTGTTATAGACTAA+CGG | - | chr2.2:62051501-62051520 | MS.gene002986:intron | 20.0% |
| !! | TAGTACTATATTATTAAGGA+TGG | - | chr2.2:62049191-62049210 | MS.gene002986:intron | 20.0% |
| !! | TGGAAATACTTAAAAATTCA+GGG | - | chr2.2:62049833-62049852 | MS.gene002986:CDS | 20.0% |
| !!! | AAAATATTTTTTTGAGGAGA+GGG | - | chr2.2:62048882-62048901 | MS.gene002986:intron | 20.0% |
| !!! | AATTTTCACATTCTTCATTT+TGG | - | chr2.2:62048077-62048096 | MS.gene002986:intron | 20.0% |
| !!! | AGCTCAATTTTATTTTAGTA+AGG | - | chr2.2:62050431-62050450 | MS.gene002986:intron | 20.0% |
| !!! | ATTAAAGGTTGATAAGTTAA+AGG | - | chr2.2:62048332-62048351 | MS.gene002986:CDS | 20.0% |
| !!! | ATTTTACACATAAATGGAAA+TGG | + | chr2.2:62051040-62051059 | None:intergenic | 20.0% |
| !!! | ATTTTCACATTCTTCATTTT+GGG | - | chr2.2:62048078-62048097 | MS.gene002986:intron | 20.0% |
| !!! | GCTGTTTAAAATGTTAAAAT+TGG | - | chr2.2:62049270-62049289 | MS.gene002986:intron | 20.0% |
| !!! | GTAGATTTTTTTTATACAAG+GGG | + | chr2.2:62047970-62047989 | None:intergenic | 20.0% |
| !!! | TAAAATATTTTTTTGAGGAG+AGG | - | chr2.2:62048881-62048900 | MS.gene002986:intron | 20.0% |
| !!! | TAACTTTTTCATTTAGTTGA+AGG | - | chr2.2:62050209-62050228 | MS.gene002986:intron | 20.0% |
| !!! | TGATATTTGTTAATGAAGTT+CGG | - | chr2.2:62048507-62048526 | MS.gene002986:intron | 20.0% |
| !!! | TGGTCTTTGAAAAAAAAAAA+GGG | - | chr2.2:62050655-62050674 | MS.gene002986:intron | 20.0% |
| !!! | TTGATTTTCATGATATACTA+TGG | - | chr2.2:62050152-62050171 | MS.gene002986:intron | 20.0% |
| !!! | TTGTCTATATACTTTTCTTT+TGG | + | chr2.2:62049318-62049337 | None:intergenic | 20.0% |
| !!! | TTTTACACATAAATGGAAAT+GGG | + | chr2.2:62051039-62051058 | None:intergenic | 20.0% |
| ! | AAAGAAAGATTCAAAAACTG+TGG | - | chr2.2:62049660-62049679 | MS.gene002986:intron | 25.0% |
| ! | AAATGGAAATGGGATAAAAA+CGG | + | chr2.2:62051029-62051048 | None:intergenic | 25.0% |
| ! | AATATTGGAGATTCAATAGA+AGG | + | chr2.2:62049158-62049177 | None:intergenic | 25.0% |
| ! | CAAACATGGAATGTATAATA+AGG | + | chr2.2:62047936-62047955 | None:intergenic | 25.0% |
| ! | TAACAACTATTAGCTAAGTT+CGG | + | chr2.2:62051493-62051512 | None:intergenic | 25.0% |
| ! | TATACCAAGTCAAATACATA+TGG | - | chr2.2:62050242-62050261 | MS.gene002986:intron | 25.0% |
| ! | TATAGACAAACATTTCTGAA+AGG | - | chr2.2:62049329-62049348 | MS.gene002986:CDS | 25.0% |
| ! | TATATACATAACTACCAACA+TGG | + | chr2.2:62051068-62051087 | None:intergenic | 25.0% |
| ! | TCAAATACATATGGAAAGTA+TGG | - | chr2.2:62050251-62050270 | MS.gene002986:intron | 25.0% |
| ! | TTGTGTAAAACTCTTTACAT+TGG | + | chr2.2:62050965-62050984 | None:intergenic | 25.0% |
| ! | TTTCATGATATACTATGGAT+TGG | - | chr2.2:62050157-62050176 | MS.gene002986:intron | 25.0% |
| !! | ATACTGGAAAAGATTTTCAA+AGG | - | chr2.2:62049637-62049656 | MS.gene002986:intron | 25.0% |
| !! | ATAGACAAACATTTCTGAAA+GGG | - | chr2.2:62049330-62049349 | MS.gene002986:CDS | 25.0% |
| !! | GGTCTTTGAAAAAAAAAAAG+GGG | - | chr2.2:62050656-62050675 | MS.gene002986:intron | 25.0% |
| !! | GTGGTCTTTGAAAAAAAAAA+AGG | - | chr2.2:62050654-62050673 | MS.gene002986:intron | 25.0% |
| !! | TAAACAGCTTTTTATCATAG+AGG | + | chr2.2:62049258-62049277 | None:intergenic | 25.0% |
| !! | TTTTCACATTCTTCATTTTG+GGG | - | chr2.2:62048079-62048098 | MS.gene002986:intron | 25.0% |
| !!! | AAACTATTTTTTTGAGGAGA+GGG | - | chr2.2:62048961-62048980 | MS.gene002986:intron | 25.0% |
| !!! | ATTTTAACATGGATTGAATC+AGG | + | chr2.2:62048867-62048886 | None:intergenic | 25.0% |
| !!! | TAAACTATTTTTTTGAGGAG+AGG | - | chr2.2:62048960-62048979 | MS.gene002986:intron | 25.0% |
| !!! | TATGTGTCTGTTTTATTTCA+GGG | - | chr2.2:62051599-62051618 | MS.gene002986:intron | 25.0% |
| !!! | TTATGTGTCTGTTTTATTTC+AGG | - | chr2.2:62051598-62051617 | MS.gene002986:intron | 25.0% |
| AATCTCATTTGCAATACGAT+CGG | - | chr2.2:62051001-62051020 | MS.gene002986:intron | 30.0% | |
| AATGGAAATGGGATAAAAAC+GGG | + | chr2.2:62051028-62051047 | None:intergenic | 30.0% | |
| ACCAATAATTCAATACCTGA+AGG | + | chr2.2:62048000-62048019 | None:intergenic | 30.0% | |
| AGAAACACAGGAGAAAAAAA+GGG | + | chr2.2:62051401-62051420 | None:intergenic | 30.0% | |
| AGAAAGGAAGATAAATGTGA+TGG | + | chr2.2:62049449-62049468 | None:intergenic | 30.0% | |
| AGAACTGCAGTTTAATTCAA+TGG | + | chr2.2:62051291-62051310 | None:intergenic | 30.0% | |
| AGATATCCTAAAATGATGTG+TGG | - | chr2.2:62050379-62050398 | MS.gene002986:intron | 30.0% | |
| AGTCATGTGTAAAATGTGTT+TGG | + | chr2.2:62049928-62049947 | None:intergenic | 30.0% | |
| AGTTGAATAGGAATGTCATT+GGG | + | chr2.2:62050321-62050340 | None:intergenic | 30.0% | |
| AGTTTGAGCTAAGTGATTAA+AGG | - | chr2.2:62048317-62048336 | MS.gene002986:CDS | 30.0% | |
| ATATTTGTCGGTGAAAGATT+AGG | - | chr2.2:62048566-62048585 | MS.gene002986:intron | 30.0% | |
| ATTGAATTAAACTGCAGTTC+TGG | - | chr2.2:62051290-62051309 | MS.gene002986:CDS | 30.0% | |
| ATTTGTAGTGTTAAAGGGTT+TGG | - | chr2.2:62048283-62048302 | MS.gene002986:intron | 30.0% | |
| CAAAAGACTTCTTCTTAAAG+TGG | - | chr2.2:62048188-62048207 | MS.gene002986:intron | 30.0% | |
| CAGTTTGTATTTAGATACTG+CGG | - | chr2.2:62048601-62048620 | MS.gene002986:intron | 30.0% | |
| CTTGGGTTTGATAAACAATT+AGG | - | chr2.2:62049232-62049251 | MS.gene002986:intron | 30.0% | |
| CTTTCCATATGTATTTGACT+TGG | + | chr2.2:62050249-62050268 | None:intergenic | 30.0% | |
| GCACTACTTTCATATAATAC+TGG | - | chr2.2:62049621-62049640 | MS.gene002986:intron | 30.0% | |
| GTGGACATAAACTTACTTAT+CGG | - | chr2.2:62050398-62050417 | MS.gene002986:intron | 30.0% | |
| TAGTTGAATAGGAATGTCAT+TGG | + | chr2.2:62050322-62050341 | None:intergenic | 30.0% | |
| TATCTCTTCCACATGAATAT+TGG | + | chr2.2:62049173-62049192 | None:intergenic | 30.0% | |
| TATTTGTCGGTGAAAGATTA+GGG | - | chr2.2:62048567-62048586 | MS.gene002986:intron | 30.0% | |
| TCAACTCGACTTAAATTAGT+GGG | - | chr2.2:62050495-62050514 | MS.gene002986:intron | 30.0% | |
| TCTTACCTTGTAGACAAATT+TGG | + | chr2.2:62048812-62048831 | None:intergenic | 30.0% | |
| TGCAAATGACTGTAAAAGAA+AGG | + | chr2.2:62049465-62049484 | None:intergenic | 30.0% | |
| TGGACATAAACTTACTTATC+GGG | - | chr2.2:62050399-62050418 | MS.gene002986:intron | 30.0% | |
| TTCTTGTATGAGTCTGAATT+TGG | + | chr2.2:62049057-62049076 | None:intergenic | 30.0% | |
| TTGAATCTCCAATATTCATG+TGG | - | chr2.2:62049162-62049181 | MS.gene002986:intron | 30.0% | |
| TTTGTAGTGTTAAAGGGTTT+GGG | - | chr2.2:62048284-62048303 | MS.gene002986:intron | 30.0% | |
| ! | ATTTAGCATGTTTGTTGCAT+TGG | + | chr2.2:62051535-62051554 | None:intergenic | 30.0% |
| ! | GCATCCATTTTACACATAAA+TGG | + | chr2.2:62051046-62051065 | None:intergenic | 30.0% |
| ! | TTATGTCCACACATCATTTT+AGG | + | chr2.2:62050388-62050407 | None:intergenic | 30.0% |
| ! | TTTCACATTCTTCATTTTGG+GGG | - | chr2.2:62048080-62048099 | MS.gene002986:intron | 30.0% |
| !! | AAATCTACTTTTAGTCCTTC+AGG | - | chr2.2:62047982-62048001 | MS.gene002986:intron | 30.0% |
| !! | AATTGGTTCTATTTCTCATC+TGG | - | chr2.2:62049287-62049306 | MS.gene002986:intron | 30.0% |
| !! | ATTTTGGAAATACCAAACAC+AGG | - | chr2.2:62050627-62050646 | MS.gene002986:intron | 30.0% |
| !! | TACTATGGATTGGTTATTGA+AGG | - | chr2.2:62050167-62050186 | MS.gene002986:intron | 30.0% |
| !! | TCAGGTATTGAATTATTGGT+GGG | - | chr2.2:62048000-62048019 | MS.gene002986:intron | 30.0% |
| !! | TCCTTCAGGTATTGAATTAT+TGG | - | chr2.2:62047996-62048015 | MS.gene002986:intron | 30.0% |
| !! | TCTTAAGTGTGTTTAGTTTG+CGG | - | chr2.2:62051438-62051457 | MS.gene002986:intron | 30.0% |
| !! | TTAAGGATGGGCTTTTATTA+AGG | - | chr2.2:62049204-62049223 | MS.gene002986:intron | 30.0% |
| !! | TTCAGGTATTGAATTATTGG+TGG | - | chr2.2:62047999-62048018 | MS.gene002986:intron | 30.0% |
| !!! | ATGTGTCTGTTTTATTTCAG+GGG | - | chr2.2:62051600-62051619 | MS.gene002986:CDS | 30.0% |
| !!! | GTGGCTAAACTATTTTTTTG+AGG | - | chr2.2:62048955-62048974 | MS.gene002986:intron | 30.0% |
| AAAACAACACGGAAATGAAG+AGG | + | chr2.2:62051349-62051368 | None:intergenic | 35.0% | |
| AAAGAAGAGGAAACATACCT+TGG | + | chr2.2:62047888-62047907 | None:intergenic | 35.0% | |
| AAGATGTCAACTGTTCAATC+AGG | + | chr2.2:62050118-62050137 | None:intergenic | 35.0% | |
| AATAGGAATGTCATTGGGTT+GGG | + | chr2.2:62050316-62050335 | None:intergenic | 35.0% | |
| ACAAGGTAAGAATGTGTACA+TGG | - | chr2.2:62048821-62048840 | MS.gene002986:intron | 35.0% | |
| ATATGAAAGTAGTGCCCAAA+TGG | + | chr2.2:62049616-62049635 | None:intergenic | 35.0% | |
| ATTCAAAAACTGTGGTCAAG+AGG | - | chr2.2:62049668-62049687 | MS.gene002986:intron | 35.0% | |
| CAATTAACTCATGCAGTGTA+TGG | - | chr2.2:62049813-62049832 | MS.gene002986:CDS | 35.0% | |
| CCAATTTCAACTTACCCAAA+GGG | - | chr2.2:62048694-62048713 | MS.gene002986:intron | 35.0% | |
| CGAAAAATTGAGAGAAACAC+AGG | + | chr2.2:62051413-62051432 | None:intergenic | 35.0% | |
| CTTAAAAGTCGTACAGAAGA+TGG | - | chr2.2:62050925-62050944 | MS.gene002986:intron | 35.0% | |
| GAAAGAGATTGAGAAAGAAG+AGG | + | chr2.2:62047901-62047920 | None:intergenic | 35.0% | |
| GAGAAACACAGGAGAAAAAA+AGG | + | chr2.2:62051402-62051421 | None:intergenic | 35.0% | |
| GGACATAAACTTACTTATCG+GGG | - | chr2.2:62050400-62050419 | MS.gene002986:intron | 35.0% | |
| GTCAACTCGACTTAAATTAG+TGG | - | chr2.2:62050494-62050513 | MS.gene002986:intron | 35.0% | |
| TAATTTATCCACCCAACAAC+AGG | + | chr2.2:62051316-62051335 | None:intergenic | 35.0% | |
| TAGGTCCAAATTTGTCTACA+AGG | - | chr2.2:62048804-62048823 | MS.gene002986:intron | 35.0% | |
| TATTAGGAGAGCTCCATAAT+GGG | - | chr2.2:62050472-62050491 | MS.gene002986:intron | 35.0% | |
| TCTACAATGTTGCTGCTAAT+CGG | - | chr2.2:62049359-62049378 | MS.gene002986:intron | 35.0% | |
| TCTATCTGTGACCTAAATTC+AGG | - | chr2.2:62049727-62049746 | MS.gene002986:intron | 35.0% | |
| TCTTGTCACATGTTGGTATT+AGG | - | chr2.2:62050456-62050475 | MS.gene002986:intron | 35.0% | |
| TTCAAAAACTGTGGTCAAGA+GGG | - | chr2.2:62049669-62049688 | MS.gene002986:intron | 35.0% | |
| TTCATTTAGTTGAAGGAGCA+TGG | - | chr2.2:62050216-62050235 | MS.gene002986:intron | 35.0% | |
| TTGCAGCTTCAAGAAAATTG+CGG | + | chr2.2:62050571-62050590 | None:intergenic | 35.0% | |
| TTGTCAGCAGTGTCAAAAAT+AGG | - | chr2.2:62050287-62050306 | MS.gene002986:intron | 35.0% | |
| ! | AAACATACCTTGGTTCTCAA+AGG | + | chr2.2:62047878-62047897 | None:intergenic | 35.0% |
| ! | CCTTTGGGTAAGTTGAAATT+GGG | + | chr2.2:62048696-62048715 | None:intergenic | 35.0% |
| ! | GACTTAAATTAGTGGGTGTT+TGG | - | chr2.2:62050502-62050521 | MS.gene002986:intron | 35.0% |
| ! | GTTGATAAGTTAAAGGTGCA+GGG | - | chr2.2:62048339-62048358 | MS.gene002986:CDS | 35.0% |
| ! | TGTGGTTGTAACGTGAATTT+TGG | - | chr2.2:62050611-62050630 | MS.gene002986:intron | 35.0% |
| ! | TTTTATTGGATGCAGCTTCT+TGG | - | chr2.2:62049574-62049593 | MS.gene002986:intron | 35.0% |
| !! | ATAATGAAAAAGTGGACTGC+AGG | - | chr2.2:62051085-62051104 | MS.gene002986:intron | 35.0% |
| !! | CTTTTATTAAGGATGGGCTT+GGG | - | chr2.2:62049215-62049234 | MS.gene002986:intron | 35.0% |
| !! | GATGGGCTTTTATTAAGGAT+GGG | - | chr2.2:62049209-62049228 | MS.gene002986:intron | 35.0% |
| !!! | TGTGTCTGTTTTATTTCAGG+GGG | - | chr2.2:62051601-62051620 | MS.gene002986:CDS | 35.0% |
| AACTTGTGCAGAGATCCAAA+AGG | - | chr2.2:62049031-62049050 | MS.gene002986:intron | 40.0% | |
| AATACCAAACACAGGCTTAG+TGG | - | chr2.2:62050635-62050654 | MS.gene002986:intron | 40.0% | |
| ACAGCTTAGTAGCATTTGTC+TGG | - | chr2.2:62051371-62051390 | MS.gene002986:intron | 40.0% | |
| ACTCCTAATGCACACAACAA+AGG | - | chr2.2:62050023-62050042 | MS.gene002986:intron | 40.0% | |
| AGACAAATGCTACTAAGCTG+TGG | + | chr2.2:62051372-62051391 | None:intergenic | 40.0% | |
| ATAGTGTCTCAGAAGCTTAC+TGG | - | chr2.2:62048147-62048166 | MS.gene002986:CDS | 40.0% | |
| ATGGGTTCTGTTGCAAAGAA+TGG | - | chr2.2:62047818-62047837 | MS.gene002986:CDS | 40.0% | |
| CAACAATTAACATGAGTGCC+AGG | + | chr2.2:62049753-62049772 | None:intergenic | 40.0% | |
| CAACTATTAGCTAAGTTCGG+CGG | + | chr2.2:62051490-62051509 | None:intergenic | 40.0% | |
| CAAGAAAATTGCGGTGGAAA+GGG | + | chr2.2:62050562-62050581 | None:intergenic | 40.0% | |
| CCCAATTTCAACTTACCCAA+AGG | - | chr2.2:62048693-62048712 | MS.gene002986:intron | 40.0% | |
| CTAAGCTGTGGAAAACAACA+CGG | + | chr2.2:62051360-62051379 | None:intergenic | 40.0% | |
| CTGAGCCATCCAATAATCAT+CGG | + | chr2.2:62050757-62050776 | None:intergenic | 40.0% | |
| CTGGTTATCTTGGACCATTT+GGG | - | chr2.2:62049599-62049618 | MS.gene002986:intron | 40.0% | |
| CTGTAATGTCAGTGCTACAT+AGG | - | chr2.2:62048785-62048804 | MS.gene002986:intron | 40.0% | |
| GAATAGGAATGTCATTGGGT+TGG | + | chr2.2:62050317-62050336 | None:intergenic | 40.0% | |
| GGGTGAAGCAAAAACAAACA+TGG | + | chr2.2:62047950-62047969 | None:intergenic | 40.0% | |
| GTAAAACAGGTCATTACTGC+TGG | - | chr2.2:62048102-62048121 | MS.gene002986:CDS | 40.0% | |
| GTATTAGGAGAGCTCCATAA+TGG | - | chr2.2:62050471-62050490 | MS.gene002986:intron | 40.0% | |
| GTGAAAGCTAGAGTGAAGAA+GGG | - | chr2.2:62051124-62051143 | MS.gene002986:intron | 40.0% | |
| GTGTAAAATGGATGCCATGT+TGG | - | chr2.2:62051051-62051070 | MS.gene002986:intron | 40.0% | |
| TAAGGTCTCTTGTCACATGT+TGG | - | chr2.2:62050449-62050468 | MS.gene002986:intron | 40.0% | |
| TCAAGAAAATTGCGGTGGAA+AGG | + | chr2.2:62050563-62050582 | None:intergenic | 40.0% | |
| TGTGAAAGCTAGAGTGAAGA+AGG | - | chr2.2:62051123-62051142 | MS.gene002986:intron | 40.0% | |
| TTCAACTTACCCAAAGGGTT+TGG | - | chr2.2:62048699-62048718 | MS.gene002986:intron | 40.0% | |
| TTCACCTGTCCGATGATTAT+TGG | - | chr2.2:62050745-62050764 | MS.gene002986:intron | 40.0% | |
| ! | AGAACATCCTTTGAGAACCA+AGG | - | chr2.2:62047868-62047887 | MS.gene002986:intron | 40.0% |
| ! | ATAGTGTTGGAACAGCAACT+CGG | - | chr2.2:62048435-62048454 | MS.gene002986:intron | 40.0% |
| ! | CATGTTTGTTGCATTGGTGT+TGG | + | chr2.2:62051529-62051548 | None:intergenic | 40.0% |
| ! | CCCTTTGGGTAAGTTGAAAT+TGG | + | chr2.2:62048697-62048716 | None:intergenic | 40.0% |
| ! | GCACTGACATTACAGATTGA+TGG | + | chr2.2:62048780-62048799 | None:intergenic | 40.0% |
| ! | TCTCCTTTGTTGTGTGCATT+AGG | + | chr2.2:62050029-62050048 | None:intergenic | 40.0% |
| !! | CTTCATTTTGGGGGTAAAAC+AGG | - | chr2.2:62048089-62048108 | MS.gene002986:intron | 40.0% |
| !! | GCTTTTATTAAGGATGGGCT+TGG | - | chr2.2:62049214-62049233 | MS.gene002986:intron | 40.0% |
| !! | GGATGGGCTTTTATTAAGGA+TGG | - | chr2.2:62049208-62049227 | MS.gene002986:intron | 40.0% |
| !! | GGTTGATAAGTTAAAGGTGC+AGG | - | chr2.2:62048338-62048357 | MS.gene002986:CDS | 40.0% |
| !! | TAAGTCGAGTTGACCCATTA+TGG | + | chr2.2:62050488-62050507 | None:intergenic | 40.0% |
| !! | TGAGTCTGAATTTGGCCTTT+TGG | + | chr2.2:62049049-62049068 | None:intergenic | 40.0% |
| !! | TTACAGATTGATGGCGTGTT+TGG | + | chr2.2:62048771-62048790 | None:intergenic | 40.0% |
| !! | TTTTTGAGGAGAGGGTGAAT+TGG | - | chr2.2:62048890-62048909 | MS.gene002986:intron | 40.0% |
| AAGACCACTAAGCCTGTGTT+TGG | + | chr2.2:62050642-62050661 | None:intergenic | 45.0% | |
| AATATCAGCTGCCCTACAGT+CGG | + | chr2.2:62048551-62048570 | None:intergenic | 45.0% | |
| ACCACTAGTCCAAACCCTTT+GGG | + | chr2.2:62048711-62048730 | None:intergenic | 45.0% | |
| ATGCAATTCATGGCTAGGTG+TGG | - | chr2.2:62048936-62048955 | MS.gene002986:intron | 45.0% | |
| ATTACTGCTGGTGTGTTGTC+AGG | - | chr2.2:62048114-62048133 | MS.gene002986:CDS | 45.0% | |
| CAGCTTCAAGAAAATTGCGG+TGG | + | chr2.2:62050568-62050587 | None:intergenic | 45.0% | |
| CATGATGCTTTCTGCACTGA+TGG | + | chr2.2:62051154-62051173 | None:intergenic | 45.0% | |
| CCATCCAATAATCATCGGAC+AGG | + | chr2.2:62050752-62050771 | None:intergenic | 45.0% | |
| CCTGTCCGATGATTATTGGA+TGG | - | chr2.2:62050749-62050768 | MS.gene002986:intron | 45.0% | |
| CTTCTTGGAGCTGGTTATCT+TGG | - | chr2.2:62049589-62049608 | MS.gene002986:intron | 45.0% | |
| CTTTCACATTCACCCAAGGT+TGG | + | chr2.2:62051111-62051130 | None:intergenic | 45.0% | |
| GAAAGGGTTTAAACGTGAGG+TGG | + | chr2.2:62050546-62050565 | None:intergenic | 45.0% | |
| GATACAATGGACCTGACTCT+CGG | - | chr2.2:62050686-62050705 | MS.gene002986:intron | 45.0% | |
| GCTGGTTATCTTGGACCATT+TGG | - | chr2.2:62049598-62049617 | MS.gene002986:intron | 45.0% | |
| GTAGGGCAGCTGATATTTGT+CGG | - | chr2.2:62048554-62048573 | MS.gene002986:intron | 45.0% | |
| GTGGAAAGGGTTTAAACGTG+AGG | + | chr2.2:62050549-62050568 | None:intergenic | 45.0% | |
| TCTGCACAAGTTCCATCCTT+CGG | + | chr2.2:62049023-62049042 | None:intergenic | 45.0% | |
| TGTACATGGATGTTCTCACG+TGG | - | chr2.2:62048835-62048854 | MS.gene002986:intron | 45.0% | |
| TTACTGCTGGTGTGTTGTCA+GGG | - | chr2.2:62048115-62048134 | MS.gene002986:CDS | 45.0% | |
| TTTCTTTACCTCCGAGAGTC+AGG | + | chr2.2:62050700-62050719 | None:intergenic | 45.0% | |
| ! | AAGGGGCATGCATGATACAA+TGG | - | chr2.2:62050673-62050692 | MS.gene002986:intron | 45.0% |
| ! | CTAGCTTTCACATTCACCCA+AGG | + | chr2.2:62051115-62051134 | None:intergenic | 45.0% |
| ! | GCAGGGTTTAAGTTCTGACA+AGG | - | chr2.2:62048356-62048375 | MS.gene002986:CDS | 45.0% |
| ! | TGGGTGTTTGGTAACCAAGT+GGG | - | chr2.2:62050514-62050533 | MS.gene002986:intron | 45.0% |
| !! | AGTGCAGAAAGCATCATGGA+CGG | - | chr2.2:62051156-62051175 | MS.gene002986:intron | 45.0% |
| !! | CATCAGTGCAGAAAGCATCA+TGG | - | chr2.2:62051152-62051171 | MS.gene002986:intron | 45.0% |
| !!! | CATATAATTTTTTTTTTTAT+TGG | - | chr2.2:62049560-62049579 | MS.gene002986:intron | 5.0% |
| AGGGTTTAAACGTGAGGTGG+CGG | + | chr2.2:62050543-62050562 | None:intergenic | 50.0% | |
| CATGGATGTTCTCACGTGGA+AGG | - | chr2.2:62048839-62048858 | MS.gene002986:intron | 50.0% | |
| CTGTGACCTAAATTCAGGCC+TGG | - | chr2.2:62049732-62049751 | MS.gene002986:intron | 50.0% | |
| GACCACTAGTCCAAACCCTT+TGG | + | chr2.2:62048712-62048731 | None:intergenic | 50.0% | |
| GACGGATGCAATTCATGGCT+AGG | - | chr2.2:62048931-62048950 | MS.gene002986:intron | 50.0% | |
| GCGTCTAACACAGACACATG+TGG | + | chr2.2:62048749-62048768 | None:intergenic | 50.0% | |
| GTGAATTGGTACAAGTCCCC+CGG | - | chr2.2:62048904-62048923 | MS.gene002986:intron | 50.0% | |
| TGAGTGCCAGGCCTGAATTT+AGG | + | chr2.2:62049741-62049760 | None:intergenic | 50.0% | |
| TGCCTACATCTCCGACTGTA+GGG | - | chr2.2:62048537-62048556 | MS.gene002986:intron | 50.0% | |
| ! | ACCCAAAGGGTTTGGACTAG+TGG | - | chr2.2:62048707-62048726 | MS.gene002986:intron | 50.0% |
| ! | GTGGGTGTTTGGTAACCAAG+TGG | - | chr2.2:62050513-62050532 | MS.gene002986:intron | 50.0% |
| ! | GTTAGCTTCAGCTGAACGTG+TGG | - | chr2.2:62050593-62050612 | MS.gene002986:intron | 50.0% |
| ! | TGCAGTTCTGGCCTGTTGTT+GGG | - | chr2.2:62051302-62051321 | MS.gene002986:CDS | 50.0% |
| ACAATGGACCTGACTCTCGG+AGG | - | chr2.2:62050689-62050708 | MS.gene002986:intron | 55.0% | |
| GCAGGGACGGATGCAATTCA+TGG | - | chr2.2:62048926-62048945 | MS.gene002986:intron | 55.0% | |
| GTGCCTACATCTCCGACTGT+AGG | - | chr2.2:62048536-62048555 | MS.gene002986:intron | 55.0% | |
| TGAATTGCATCCGTCCCTGC+CGG | + | chr2.2:62048926-62048945 | None:intergenic | 55.0% | |
| TGCCCTACAGTCGGAGATGT+AGG | + | chr2.2:62048542-62048561 | None:intergenic | 55.0% | |
| TGGATGCAGCTTCTTGGAGC+TGG | - | chr2.2:62049580-62049599 | MS.gene002986:intron | 55.0% | |
| ! | AGTTCTGGCCTGTTGTTGGG+TGG | - | chr2.2:62051305-62051324 | MS.gene002986:CDS | 55.0% |
| ! | CTGCAGTTCTGGCCTGTTGT+TGG | - | chr2.2:62051301-62051320 | MS.gene002986:CDS | 55.0% |
| AATTGCATCCGTCCCTGCCG+GGG | + | chr2.2:62048924-62048943 | None:intergenic | 60.0% | |
| ATCCTTCGGCGACAGTGCAC+CGG | + | chr2.2:62049009-62049028 | None:intergenic | 60.0% | |
| ATTGGTACAAGTCCCCCGGC+AGG | - | chr2.2:62048908-62048927 | MS.gene002986:intron | 60.0% | |
| ATTGGTACAAGTCCCCGCCC+CGG | - | chr2.2:62048987-62049006 | MS.gene002986:intron | 60.0% | |
| GAATTGCATCCGTCCCTGCC+GGG | + | chr2.2:62048925-62048944 | None:intergenic | 60.0% | |
| TTGGTACAAGTCCCCCGGCA+GGG | - | chr2.2:62048909-62048928 | MS.gene002986:intron | 60.0% | |
| ! | GTGGACTGCAGGCCAACCTT+GGG | - | chr2.2:62051096-62051115 | MS.gene002986:intron | 60.0% |
| ! | TGAGGTGGCGGTAACCCACT+TGG | + | chr2.2:62050531-62050550 | None:intergenic | 60.0% |
| !! | AGTGGACTGCAGGCCAACCT+TGG | - | chr2.2:62051095-62051114 | MS.gene002986:intron | 60.0% |
| ATTGCATCCGTCCCTGCCGG+GGG | + | chr2.2:62048923-62048942 | None:intergenic | 65.0% | |
| GGTGCACTGTCGCCGAAGGA+TGG | - | chr2.2:62049008-62049027 | MS.gene002986:intron | 65.0% | |
| TACAAGTCCCCCGGCAGGGA+CGG | - | chr2.2:62048913-62048932 | MS.gene002986:intron | 65.0% | |
| TCCTTCGGCGACAGTGCACC+GGG | + | chr2.2:62049008-62049027 | None:intergenic | 65.0% | |
| CCTTCGGCGACAGTGCACCG+GGG | + | chr2.2:62049007-62049026 | None:intergenic | 70.0% | |
| CCCCGGTGCACTGTCGCCGA+AGG | - | chr2.2:62049004-62049023 | MS.gene002986:intron | 75.0% | |
| TCGGCGACAGTGCACCGGGG+CGG | + | chr2.2:62049004-62049023 | None:intergenic | 75.0% | |
| ! | CGGCGACAGTGCACCGGGGC+GGG | + | chr2.2:62049003-62049022 | None:intergenic | 80.0% |
| ! | GGCGACAGTGCACCGGGGCG+GGG | + | chr2.2:62049002-62049021 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 62047818 | 62051671 | 62047818 | ID=MS.gene002986 |
| chr2.2 | mRNA | 62047818 | 62051671 | 62047818 | ID=MS.gene002986.t1;Parent=MS.gene002986 |
| chr2.2 | exon | 62051600 | 62051671 | 62051600 | ID=MS.gene002986.t1.exon1;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62051600 | 62051671 | 62051600 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| chr2.2 | exon | 62051280 | 62051378 | 62051280 | ID=MS.gene002986.t1.exon2;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62051280 | 62051378 | 62051280 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| chr2.2 | exon | 62049799 | 62049900 | 62049799 | ID=MS.gene002986.t1.exon3;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62049799 | 62049900 | 62049799 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| chr2.2 | exon | 62049301 | 62049376 | 62049301 | ID=MS.gene002986.t1.exon4;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62049301 | 62049376 | 62049301 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| chr2.2 | exon | 62048312 | 62048382 | 62048312 | ID=MS.gene002986.t1.exon5;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62048312 | 62048382 | 62048312 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| chr2.2 | exon | 62048097 | 62048182 | 62048097 | ID=MS.gene002986.t1.exon6;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62048097 | 62048182 | 62048097 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| chr2.2 | exon | 62047818 | 62047869 | 62047818 | ID=MS.gene002986.t1.exon7;Parent=MS.gene002986.t1 |
| chr2.2 | CDS | 62047818 | 62047869 | 62047818 | ID=cds.MS.gene002986.t1;Parent=MS.gene002986.t1 |
| Gene Sequence |
| Protein sequence |
