AlfalfaGEDB | MS.gene004823

M. sativa cultivar XinJiangDaYe / MS.gene004823

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004823.t1	RHN80472.1	83.6	171	28	0	1	171	39	209	1.00E-73	286.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004823.t1	Q9FKK2	54.7	159	69	2	5	160	3	161	6.3e-40	165.2

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004823.t1	A0A072VM54	83.6	171	28	0	1	171	1	171	7.3e-74	286.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MS.gene004823.t1	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene004823	MS.gene068836	PPI
MS.gene004823	MS.gene22094	PPI

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004823.t1	MTR_1g077360	83.626	171	28	1	171	1	171	3.57e-104	298
MS.gene004823.t1	MTR_1g075600	83.626	171	28	1	171	1	171	1.26e-102	295
MS.gene004823.t1	MTR_1g105920	75.904	166	40	1	166	1	166	3.84e-92	268
MS.gene004823.t1	MTR_2g030740	72.353	170	47	1	170	1	170	4.73e-92	268
MS.gene004823.t1	MTR_1g105910	73.529	170	45	1	170	1	170	8.00e-92	267
MS.gene004823.t1	MTR_8g043650	71.765	170	48	1	170	1	170	3.72e-90	263
MS.gene004823.t1	MTR_1g012570	71.176	170	49	1	170	1	170	1.58e-87	256
MS.gene004823.t1	MTR_2g085250	72.189	169	47	1	169	1	169	1.90e-87	256
MS.gene004823.t1	MTR_2g085280	72.189	169	47	1	169	1	169	1.95e-87	256
MS.gene004823.t1	MTR_3g030770	72.289	166	46	1	166	1	166	1.11e-86	254

Showing 1 to 10 of 91 entries

Previous1 2 3 4 5…10Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene004823.t1	AT5G60440	54.037	161	71	2	5	162	3	163	2.55e-54	174
MS.gene004823.t1	AT2G24840	48.428	159	73	3	9	162	63	217	7.75e-44	146
MS.gene004823.t1	AT1G01530	43.827	162	88	2	4	164	2	161	1.16e-37	130
MS.gene004823.t1	AT4G36590	45.455	165	82	3	5	162	3	166	1.51e-36	127
MS.gene004823.t1	AT1G65360	43.902	164	87	4	5	166	3	163	4.03e-36	125
MS.gene004823.t1	AT2G34440	43.243	111	62	1	9	119	2	111	2.59e-26	98.6
MS.gene004823.t1	AT3G04100	32.099	162	106	2	2	159	7	168	2.72e-26	99.8
MS.gene004823.t1	AT3G66656	40.336	119	67	1	9	123	2	120	8.40e-23	89.7
MS.gene004823.t1	AT1G72350	57.534	73	29	1	9	81	43	113	7.68e-22	88.6
MS.gene004823.t1	AT2G45660	34.899	149	73	4	10	152	3	133	9.27e-19	78.6

Showing 1 to 10 of 126 entries

Previous1 2 3 4 5…13Next

Find 30 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTATTGGACAACATGC+TGG	0.551864	1.4:+61822131	MS.gene004823:CDS
AATGAAAACACCTTCTCACC+AGG	0.598148	1.4:-61821822	None:intergenic
ACCCTATTCATCCATTCAAT+TGG	0.389511	1.4:-61822068	None:intergenic
ACTCATTCTCACGCTTCTTC+TGG	0.224311	1.4:-61821998	None:intergenic
ACTTTCTCGAAGCGTCGTAG+TGG	0.635248	1.4:+61821732	MS.gene004823:CDS
AGAAGAATGAGGCTCAATTT+TGG	0.321680	1.4:+61822036	MS.gene004823:CDS
AGCAATATATGCACCACAAA+GGG	0.513172	1.4:-61821784	None:intergenic
AGTGCTTTAATCATGTCTAG+CGG	0.668258	1.4:+61821642	None:intergenic
AGTGGCCTCTTCAAGAAAGC+TGG	0.550735	1.4:+61821750	MS.gene004823:CDS
CAAGTACCACCTCAAAACAA+TGG	0.661198	1.4:+61821888	MS.gene004823:CDS

Showing 1 to 10 of 30 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TCCAATTGAATGGATGAATA+GGG	+	chr1.4:61822067-61822086	MS.gene004823:CDS	30.0%
TTGGATCTTAAGAAACGTAT+TGG	+	chr1.4:61822119-61822138	MS.gene004823:CDS	30.0%
ACCCTATTCATCCATTCAAT+TGG	-	chr1.4:61822071-61822090	None:intergenic	35.0%
AGCAATATATGCACCACAAA+GGG	-	chr1.4:61821787-61821806	None:intergenic	35.0%
GACTCAAATTAATGATGCAC+TGG	+	chr1.4:61821971-61821990	MS.gene004823:CDS	35.0%
GTCCAATTGAATGGATGAAT+AGG	+	chr1.4:61822066-61822085	MS.gene004823:CDS	35.0%
TCTAGCGGAAAGAAAAATCA+AGG	+	chr1.4:61821657-61821676	MS.gene004823:CDS	35.0%
AAACGTATTGGACAACATGC+TGG	+	chr1.4:61822131-61822150	MS.gene004823:CDS	40.0%
AATGAAAACACCTTCTCACC+AGG	-	chr1.4:61821825-61821844	None:intergenic	40.0%
CAAGTACCACCTCAAAACAA+TGG	+	chr1.4:61821888-61821907	MS.gene004823:CDS	40.0%

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	61821654	61822169	61821654	ID=MS.gene004823
chr1.4	mRNA	61821654	61822169	61821654	ID=MS.gene004823.t1;Parent=MS.gene004823
chr1.4	exon	61821654	61822169	61821654	ID=MS.gene004823.t1.exon1;Parent=MS.gene004823.t1
chr1.4	CDS	61821654	61822169	61821654	ID=cds.MS.gene004823.t1;Parent=MS.gene004823.t1

Gene Sequence

>MS.gene004823

ATGTCTAGCGGAAAGAAAAATCAAGGTCGCCAAAAAATTGACATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGCCTCTTCAAGAAAGCTGGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTCATTGTATTCTCACCTGGTGAGAAGGTGTTTTCATTTGGTTACCCAAATGTTGATACAATCATAGATCGTTATCTCTCTCAAGTACCACCTCAAAACAATGGCACCATGCAATTCGTTGAGGCTTACCGTAGCGCTAAATTGTGCGAGCTTAATGCTATGCTGACTCAAATTAATGATGCACTGGACATCCAGAAGAAGCGTGAGAATGAGTTGAGCGATTTGCGTAAGAAGAATGAGGCTCAATTTTGGTGGGCTTGTCCAATTGAATGGATGAATAGGGTCCAACTTCAATTATTAAAAAAGGCTTTGTTGGATCTTAAGAAACGTATTGGACAACATGCTGGTATGGTTGTAAGTTAG

Protein sequence

>MS.gene004823.t1

MSSGKKNQGRQKIDMKKMSNESNLQVTFSKRRSGLFKKAGELCTLCGAYIALIVFSPGEKVFSFGYPNVDTIIDRYLSQVPPQNNGTMQFVEAYRSAKLCELNAMLTQINDALDIQKKRENELSDLRKKNEAQFWWACPIEWMNRVQLQLLKKALLDLKKRIGQHAGMVVS