AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004823

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004823.t1 MTR_1g077360 83.626 171 28 0 1 171 1 171 3.57e-104 298
MS.gene004823.t1 MTR_1g075600 83.626 171 28 0 1 171 1 171 1.26e-102 295
MS.gene004823.t1 MTR_1g105920 75.904 166 40 0 1 166 1 166 3.84e-92 268
MS.gene004823.t1 MTR_2g030740 72.353 170 47 0 1 170 1 170 4.73e-92 268
MS.gene004823.t1 MTR_1g105910 73.529 170 45 0 1 170 1 170 8.00e-92 267
MS.gene004823.t1 MTR_8g043650 71.765 170 48 0 1 170 1 170 3.72e-90 263
MS.gene004823.t1 MTR_1g012570 71.176 170 49 0 1 170 1 170 1.58e-87 256
MS.gene004823.t1 MTR_2g085250 72.189 169 47 0 1 169 1 169 1.90e-87 256
MS.gene004823.t1 MTR_2g085280 72.189 169 47 0 1 169 1 169 1.95e-87 256
MS.gene004823.t1 MTR_3g030770 72.289 166 46 0 1 166 1 166 1.11e-86 254
MS.gene004823.t1 MTR_1g106070 70.000 170 51 0 1 170 1 170 2.64e-86 251
MS.gene004823.t1 MTR_5g045560 71.006 169 49 0 1 169 1 169 3.24e-86 253
MS.gene004823.t1 MTR_3g052920 70.588 170 50 0 1 170 1 170 3.31e-86 253
MS.gene004823.t1 MTR_1g108510 71.687 166 47 0 1 166 1 166 1.56e-85 251
MS.gene004823.t1 MTR_5g055100 72.189 169 47 0 1 169 1 169 3.51e-85 250
MS.gene004823.t1 MTR_2g093190 69.048 168 52 0 1 168 1 168 4.95e-82 242
MS.gene004823.t1 MTR_5g053390 68.639 169 53 0 1 169 1 169 1.30e-81 241
MS.gene004823.t1 MTR_0121s0080 68.675 166 52 0 1 166 1 166 7.37e-81 239
MS.gene004823.t1 MTR_1g108580 66.467 167 56 0 1 167 1 167 1.21e-80 238
MS.gene004823.t1 MTR_3g052870 65.294 170 40 1 1 170 1 151 3.59e-74 222
MS.gene004823.t1 MTR_1g105905 67.320 153 50 0 18 170 1 153 1.08e-71 215
MS.gene004823.t1 MTR_1g075570 79.221 154 18 1 18 171 1 140 2.93e-71 212
MS.gene004823.t1 MTR_7g062350 64.336 143 51 0 24 166 36 178 2.55e-63 195
MS.gene004823.t1 MTR_0121s0100 72.093 129 36 0 1 129 1 129 6.09e-63 190
MS.gene004823.t1 MTR_3g030780 69.531 128 39 0 1 128 1 128 3.61e-61 186
MS.gene004823.t1 MTR_3g080940 53.165 158 74 0 9 166 9 166 8.62e-58 180
MS.gene004823.t1 MTR_3g067910 71.845 103 29 0 21 123 2 104 4.30e-51 159
MS.gene004823.t1 MTR_8g086290 39.394 165 90 2 5 166 8 165 1.35e-33 117
MS.gene004823.t1 MTR_2g105290 36.095 169 98 2 5 170 8 169 7.58e-32 112
MS.gene004823.t1 MTR_1g108500 58.763 97 19 1 22 118 110 185 4.49e-30 112
MS.gene004823.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 2.87e-29 103
MS.gene004823.t1 MTR_3g067915 68.657 67 21 0 60 126 30 96 3.18e-29 103
MS.gene004823.t1 MTR_7g028448 39.375 160 85 4 5 164 8 155 4.79e-28 102
MS.gene004823.t1 MTR_4g036915 39.375 160 85 4 5 164 8 155 4.79e-28 102
MS.gene004823.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 3.85e-25 95.1
MS.gene004823.t1 MTR_1g047550 44.554 101 54 1 9 109 2 100 1.67e-24 94.0
MS.gene004823.t1 MTR_1g063160 45.283 106 56 2 9 112 2 107 3.46e-24 93.2
MS.gene004823.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 5.45e-24 92.8
MS.gene004823.t1 MTR_8g051580 42.105 114 61 1 9 122 2 110 5.88e-24 92.8
MS.gene004823.t1 MTR_4g131030 39.706 136 58 5 9 125 2 132 6.11e-24 93.6
MS.gene004823.t1 MTR_4g127140 34.637 179 97 5 5 170 8 179 1.27e-23 92.0
MS.gene004823.t1 MTR_1g054265 50.649 77 38 0 9 85 2 78 1.49e-22 89.0
MS.gene004823.t1 MTR_8g046350 54.930 71 32 0 9 79 2 72 3.17e-22 87.8
MS.gene004823.t1 MTR_4g094632 36.792 106 65 1 9 114 2 105 7.15e-19 79.0
MS.gene004823.t1 MTR_4g102530 40.000 110 64 1 10 119 3 110 9.66e-19 79.7
MS.gene004823.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 1.17e-17 77.4
MS.gene004823.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 3.49e-17 76.3
MS.gene004823.t1 MTR_4g094638 47.826 69 36 0 9 77 2 70 3.59e-17 75.1
MS.gene004823.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 4.16e-17 75.1
MS.gene004823.t1 MTR_8g033220 35.915 142 78 4 10 150 3 132 6.09e-17 75.5
MS.gene004823.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 7.10e-17 75.1
MS.gene004823.t1 MTR_1g053070 46.914 81 43 0 9 89 2 82 1.00e-16 75.1
MS.gene004823.t1 MTR_3g452380 47.297 74 39 0 3 76 11 84 1.07e-16 75.1
MS.gene004823.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 1.51e-16 74.7
MS.gene004823.t1 MTR_5g066180 49.296 71 36 0 9 79 2 72 1.56e-16 74.3
MS.gene004823.t1 MTR_2g017865 30.526 190 101 5 9 171 17 202 2.76e-16 74.3
MS.gene004823.t1 MTR_8g033270 50.000 68 34 0 9 76 2 69 3.04e-16 73.9
MS.gene004823.t1 MTR_4g109830 49.275 69 34 1 9 76 2 70 4.50e-16 73.2
MS.gene004823.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 5.40e-16 72.8
MS.gene004823.t1 MTR_2g009890 44.737 76 42 0 9 84 2 77 1.02e-15 72.8
MS.gene004823.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 1.35e-15 72.0
MS.gene004823.t1 MTR_8g066260 32.692 156 70 5 9 129 2 157 1.76e-15 71.6
MS.gene004823.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.06e-15 71.6
MS.gene004823.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.16e-15 71.2
MS.gene004823.t1 MTR_0003s0590 33.562 146 66 2 9 123 2 147 3.19e-15 71.2
MS.gene004823.t1 MTR_3g102570 42.857 105 57 3 9 112 2 104 4.30e-15 71.6
MS.gene004823.t1 MTR_8g022970 31.928 166 98 6 2 159 9 167 4.87e-15 69.7
MS.gene004823.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 6.64e-15 69.7
MS.gene004823.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 7.12e-15 70.1
MS.gene004823.t1 MTR_7g016630 44.444 72 39 1 9 79 2 73 7.99e-15 70.1
MS.gene004823.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 8.19e-15 69.7
MS.gene004823.t1 MTR_4g084740 38.136 118 65 4 9 124 2 113 1.33e-14 70.5
MS.gene004823.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.40e-14 65.1
MS.gene004823.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 1.55e-14 69.3
MS.gene004823.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 1.68e-14 68.9
MS.gene004823.t1 MTR_5g046790 44.928 69 37 1 9 76 2 70 1.70e-14 68.6
MS.gene004823.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 1.87e-14 69.3
MS.gene004823.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 3.65e-14 68.2
MS.gene004823.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 4.09e-14 67.8
MS.gene004823.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 4.46e-14 67.0
MS.gene004823.t1 MTR_1g029670 45.455 66 35 1 9 74 2 66 7.86e-14 66.2
MS.gene004823.t1 MTR_3g437790 34.507 142 78 5 26 159 30 164 1.23e-13 65.9
MS.gene004823.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 1.82e-13 63.5
MS.gene004823.t1 MTR_3g113030 45.714 70 36 1 9 76 2 71 1.89e-13 66.2
MS.gene004823.t1 MTR_7g075850 47.143 70 35 1 9 76 2 71 2.90e-13 65.9
MS.gene004823.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 3.91e-13 61.2
MS.gene004823.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 6.11e-13 65.1
MS.gene004823.t1 MTR_3g109930 31.387 137 84 2 27 159 20 150 9.32e-13 63.2
MS.gene004823.t1 MTR_8g097090 51.786 56 27 0 9 64 2 57 1.12e-12 64.3
MS.gene004823.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 1.17e-12 64.3
MS.gene004823.t1 MTR_4g093030 46.774 62 33 0 9 70 2 63 9.79e-12 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004823.t1 AT5G60440 54.037 161 71 2 5 162 3 163 2.55e-54 174
MS.gene004823.t1 AT2G24840 48.428 159 73 3 9 162 63 217 7.75e-44 146
MS.gene004823.t1 AT1G01530 43.827 162 88 2 4 164 2 161 1.16e-37 130
MS.gene004823.t1 AT4G36590 45.455 165 82 3 5 162 3 166 1.51e-36 127
MS.gene004823.t1 AT1G65360 43.902 164 87 4 5 166 3 163 4.03e-36 125
MS.gene004823.t1 AT2G34440 43.243 111 62 1 9 119 2 111 2.59e-26 98.6
MS.gene004823.t1 AT3G04100 32.099 162 106 2 2 159 7 168 2.72e-26 99.8
MS.gene004823.t1 AT3G66656 40.336 119 67 1 9 123 2 120 8.40e-23 89.7
MS.gene004823.t1 AT1G72350 57.534 73 29 1 9 81 43 113 7.68e-22 88.6
MS.gene004823.t1 AT2G45660 34.899 149 73 4 10 152 3 133 9.27e-19 78.6
MS.gene004823.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.53e-18 78.6
MS.gene004823.t1 AT5G51870 32.515 163 98 2 5 167 21 171 5.49e-18 77.8
MS.gene004823.t1 AT4G22950 44.156 77 43 0 10 86 3 79 6.04e-18 77.0
MS.gene004823.t1 AT5G51870 32.911 158 94 2 10 167 3 148 8.13e-18 76.6
MS.gene004823.t1 AT2G45650 51.471 68 33 0 9 76 2 69 1.17e-17 77.8
MS.gene004823.t1 AT4G09960 44.186 86 47 1 9 93 3 88 1.27e-17 77.4
MS.gene004823.t1 AT5G51870 33.566 143 84 1 10 152 3 134 1.30e-17 77.0
MS.gene004823.t1 AT4G09960 44.186 86 47 1 9 93 2 87 1.30e-17 77.4
MS.gene004823.t1 AT4G09960 44.186 86 47 1 9 93 2 87 1.36e-17 77.0
MS.gene004823.t1 AT4G09960 44.186 86 47 1 9 93 12 97 1.99e-17 77.0
MS.gene004823.t1 AT5G51870 33.566 143 84 1 10 152 3 134 2.49e-17 76.3
MS.gene004823.t1 AT4G09960 44.186 86 47 1 9 93 28 113 2.65e-17 77.0
MS.gene004823.t1 AT5G51870 33.566 143 84 1 10 152 13 144 3.00e-17 76.3
MS.gene004823.t1 AT1G29962 26.036 169 119 3 5 167 4 172 3.86e-17 75.1
MS.gene004823.t1 AT4G09960 44.186 86 47 1 9 93 97 182 4.13e-17 77.4
MS.gene004823.t1 AT4G22950 46.479 71 38 0 10 80 3 73 4.46e-17 75.9
MS.gene004823.t1 AT4G22950 46.479 71 38 0 10 80 3 73 4.46e-17 75.9
MS.gene004823.t1 AT3G54340 41.221 131 61 6 9 125 2 130 5.99e-17 75.5
MS.gene004823.t1 AT1G28460 30.435 138 93 1 5 139 4 141 9.49e-17 73.9
MS.gene004823.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.51e-16 72.8
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.00e-16 72.8
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.00e-16 72.8
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.00e-16 72.8
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 3.07e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 3.07e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 3.07e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 3.07e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 3.07e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 3.94e-16 70.5
MS.gene004823.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.49e-16 73.6
MS.gene004823.t1 AT3G57230 45.588 68 37 0 9 76 2 69 4.49e-16 73.6
MS.gene004823.t1 AT4G24540 32.716 162 92 3 9 170 2 146 5.52e-16 72.8
MS.gene004823.t1 AT5G10140 49.275 69 34 1 9 76 2 70 5.52e-16 71.6
MS.gene004823.t1 AT4G37940 47.059 68 36 0 9 76 2 69 5.63e-16 72.8
MS.gene004823.t1 AT4G37940 47.059 68 36 0 9 76 2 69 6.16e-16 72.4
MS.gene004823.t1 AT5G10140 49.275 69 34 1 9 76 2 70 6.86e-16 71.6
MS.gene004823.t1 AT4G18960 37.838 111 59 1 2 112 11 111 7.82e-16 72.8
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.05e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.05e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.05e-16 72.0
MS.gene004823.t1 AT3G61120 50.000 68 34 0 9 76 2 69 8.12e-16 72.8
MS.gene004823.t1 AT5G10140 49.275 69 34 1 9 76 2 70 8.36e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.45e-16 72.0
MS.gene004823.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.45e-16 72.0
MS.gene004823.t1 AT5G10140 49.275 69 34 1 9 76 2 70 8.85e-16 71.6
MS.gene004823.t1 AT2G22540 48.529 68 35 0 9 76 2 69 9.06e-16 72.8
MS.gene004823.t1 AT2G22540 48.529 68 35 0 9 76 2 69 9.06e-16 72.8
MS.gene004823.t1 AT3G57390 50.000 68 34 0 9 76 2 69 9.22e-16 72.4
MS.gene004823.t1 AT5G51860 49.254 67 34 0 10 76 3 69 1.21e-15 71.6
MS.gene004823.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.26e-15 70.9
MS.gene004823.t1 AT5G13790 50.000 68 34 0 9 76 2 69 1.28e-15 72.8
MS.gene004823.t1 AT5G13790 50.000 68 34 0 9 76 2 69 1.34e-15 72.4
MS.gene004823.t1 AT5G51860 49.254 67 34 0 10 76 3 69 1.61e-15 71.2
MS.gene004823.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.65e-15 72.0
MS.gene004823.t1 AT5G23260 50.000 76 36 1 5 78 14 89 2.27e-15 72.0
MS.gene004823.t1 AT1G17310 54.054 74 32 1 8 81 47 118 2.27e-15 71.2
MS.gene004823.t1 AT5G23260 50.000 76 36 1 5 78 14 89 2.31e-15 72.0
MS.gene004823.t1 AT5G60910 49.275 69 34 1 9 76 2 70 2.74e-15 71.2
MS.gene004823.t1 AT1G17310 54.054 74 32 1 8 81 58 129 3.14e-15 70.9
MS.gene004823.t1 AT2G42830 47.059 68 36 0 9 76 17 84 3.20e-15 71.2
MS.gene004823.t1 AT2G22630 47.059 68 36 0 9 76 2 69 3.22e-15 70.9
MS.gene004823.t1 AT2G22630 47.059 68 36 0 9 76 2 69 3.22e-15 70.9
MS.gene004823.t1 AT2G42830 47.059 68 36 0 9 76 17 84 3.42e-15 71.2
MS.gene004823.t1 AT4G11880 45.833 72 38 1 10 80 3 74 4.37e-15 69.7
MS.gene004823.t1 AT4G11880 45.833 72 38 1 10 80 3 74 4.37e-15 69.7
MS.gene004823.t1 AT3G58780 47.059 68 36 0 9 76 17 84 5.00e-15 70.9
MS.gene004823.t1 AT3G58780 47.059 68 36 0 9 76 23 90 5.72e-15 70.5
MS.gene004823.t1 AT1G69120 46.377 69 36 1 9 76 2 70 5.77e-15 70.5
MS.gene004823.t1 AT5G23260 51.389 72 33 1 9 78 2 73 8.07e-15 70.1
MS.gene004823.t1 AT3G58780 47.059 68 36 0 9 76 17 84 8.81e-15 70.5
MS.gene004823.t1 AT1G77980 27.568 185 112 4 9 171 2 186 8.85e-15 70.9
MS.gene004823.t1 AT4G11880 45.833 72 38 1 10 80 3 74 9.18e-15 69.7
MS.gene004823.t1 AT4G11880 45.833 72 38 1 10 80 3 74 9.18e-15 69.7
MS.gene004823.t1 AT5G23260 51.389 72 33 1 9 78 2 73 9.38e-15 69.7
MS.gene004823.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.03e-14 68.6
MS.gene004823.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.15e-14 67.8
MS.gene004823.t1 AT1G26310 44.928 69 37 1 9 76 2 70 1.27e-14 69.7
MS.gene004823.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.34e-14 69.7
MS.gene004823.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.47e-14 69.3
MS.gene004823.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.72e-14 68.9
MS.gene004823.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.78e-14 68.6
MS.gene004823.t1 AT1G22130 28.649 185 110 5 9 171 2 186 2.32e-14 69.7
MS.gene004823.t1 AT1G28450 25.000 172 123 3 5 170 4 175 2.52e-14 67.8
MS.gene004823.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.38e-14 67.4
MS.gene004823.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.42e-14 67.8
MS.gene004823.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.99e-14 67.0
MS.gene004823.t1 AT1G77950 42.254 71 40 1 9 78 2 72 5.65e-14 67.8
MS.gene004823.t1 AT1G77950 42.254 71 40 1 9 78 2 72 5.65e-14 67.8
MS.gene004823.t1 AT1G77950 42.254 71 40 1 9 78 2 72 5.65e-14 67.8
MS.gene004823.t1 AT1G77950 42.254 71 40 1 9 78 2 72 5.65e-14 67.8
MS.gene004823.t1 AT5G15800 47.826 69 35 1 9 76 2 70 6.06e-14 67.8
MS.gene004823.t1 AT1G47760 41.791 67 39 0 9 75 2 68 6.20e-14 66.6
MS.gene004823.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.45e-14 66.6
MS.gene004823.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.02e-13 67.4
MS.gene004823.t1 AT2G03710 53.571 56 26 0 9 64 2 57 1.15e-13 65.9
MS.gene004823.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.19e-13 65.9
MS.gene004823.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.21e-13 66.2
MS.gene004823.t1 AT2G22540 55.357 56 25 0 9 64 2 57 2.01e-13 66.2
MS.gene004823.t1 AT3G02310 46.377 69 36 1 9 76 2 70 2.24e-13 65.5
MS.gene004823.t1 AT2G03710 53.571 56 26 0 9 64 2 57 4.99e-13 65.5
MS.gene004823.t1 AT2G03710 53.571 56 26 0 9 64 2 57 5.04e-13 65.5
MS.gene004823.t1 AT5G65070 42.029 69 39 1 9 76 2 70 7.30e-13 63.2
MS.gene004823.t1 AT5G65070 42.029 69 39 1 9 76 2 70 7.56e-13 63.9
MS.gene004823.t1 AT3G02310 46.377 69 36 1 9 76 2 70 7.86e-13 64.7
MS.gene004823.t1 AT3G58780 49.123 57 29 0 9 65 17 73 7.90e-13 64.7
MS.gene004823.t1 AT1G24260 51.786 56 27 0 9 64 2 57 8.97e-13 64.7
MS.gene004823.t1 AT1G24260 51.786 56 27 0 9 64 2 57 9.43e-13 64.7
MS.gene004823.t1 AT1G71692 44.928 69 37 1 10 77 3 71 9.53e-13 63.9
MS.gene004823.t1 AT1G24260 51.786 56 27 0 9 64 2 57 9.64e-13 64.3
MS.gene004823.t1 AT3G58780 49.123 57 29 0 9 65 17 73 1.17e-12 64.7
MS.gene004823.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.01e-12 63.5
MS.gene004823.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.35e-12 62.4
MS.gene004823.t1 AT2G26320 43.243 74 40 1 5 76 14 87 6.96e-12 59.3
MS.gene004823.t1 AT5G65070 45.614 57 31 0 9 65 2 58 1.26e-11 61.2
MS.gene004823.t1 AT4G37435 35.052 97 58 2 9 100 2 98 3.42e-11 59.3
MS.gene004823.t1 AT5G65080 40.580 69 40 1 9 76 9 77 5.11e-11 58.9

Find 30 sgRNAs with CRISPR-Local

Find 36 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCATTCTCACGCTTCTTC+TGG 0.224311 1.4:-61821998 None:intergenic
TCTATGATTGTATCAACATT+TGG 0.303949 1.4:-61821852 None:intergenic
AGAAGAATGAGGCTCAATTT+TGG 0.321680 1.4:+61822036 MS.gene004823:CDS
TGCTGGTATGGTTGTAAGTT+AGG 0.349878 1.4:+61822148 MS.gene004823:CDS
TTGGATCTTAAGAAACGTAT+TGG 0.372337 1.4:+61822119 MS.gene004823:CDS
GGCGAGCTTTGCACCCTTTG+TGG 0.375043 1.4:+61821771 MS.gene004823:CDS
GTCCAATTGAATGGATGAAT+AGG 0.386988 1.4:+61822066 MS.gene004823:CDS
ACCCTATTCATCCATTCAAT+TGG 0.389511 1.4:-61822068 None:intergenic
CTATGATTGTATCAACATTT+GGG 0.399030 1.4:-61821851 None:intergenic
TCCAATTGAATGGATGAATA+GGG 0.419096 1.4:+61822067 MS.gene004823:CDS
GGTGGGCTTGTCCAATTGAA+TGG 0.452982 1.4:+61822057 MS.gene004823:CDS
GACTCAAATTAATGATGCAC+TGG 0.478157 1.4:+61821971 MS.gene004823:CDS
GCTGGTATGGTTGTAAGTTA+GGG 0.480457 1.4:+61822149 MS.gene004823:CDS
AGCAATATATGCACCACAAA+GGG 0.513172 1.4:-61821784 None:intergenic
GCTCGCCAGCTTTCTTGAAG+AGG 0.524593 1.4:-61821755 None:intergenic
GCTCTCATTGTATTCTCACC+TGG 0.528422 1.4:+61821804 MS.gene004823:CDS
AGTGGCCTCTTCAAGAAAGC+TGG 0.550735 1.4:+61821750 MS.gene004823:CDS
AAACGTATTGGACAACATGC+TGG 0.551864 1.4:+61822131 MS.gene004823:CDS
TGTATTCTCACCTGGTGAGA+AGG 0.557088 1.4:+61821812 MS.gene004823:CDS
TATTGGACAACATGCTGGTA+TGG 0.586014 1.4:+61822136 MS.gene004823:CDS
AATGAAAACACCTTCTCACC+AGG 0.598148 1.4:-61821822 None:intergenic
GCTCGCACAATTTAGCGCTA+CGG 0.599772 1.4:-61821935 None:intergenic
CGATTTGCGTAAGAAGAATG+AGG 0.600173 1.4:+61822025 MS.gene004823:CDS
CTGGTATGGTTGTAAGTTAG+GGG 0.622699 1.4:+61822150 MS.gene004823:CDS
ACTTTCTCGAAGCGTCGTAG+TGG 0.635248 1.4:+61821732 MS.gene004823:CDS
GAGCAATATATGCACCACAA+AGG 0.643897 1.4:-61821785 None:intergenic
GTAAGCCTCAACGAATTGCA+TGG 0.651547 1.4:-61821913 None:intergenic
CAAGTACCACCTCAAAACAA+TGG 0.661198 1.4:+61821888 MS.gene004823:CDS
TGGCACCATGCAATTCGTTG+AGG 0.663336 1.4:+61821908 MS.gene004823:CDS
AGTGCTTTAATCATGTCTAG+CGG 0.668258 1.4:+61821642 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATGTCAATTTTT+TGG - chr1.4:61821686-61821705 None:intergenic 15.0%
!! CCAACTTCAATTATTAAAAA+AGG + chr1.4:61822091-61822110 MS.gene004823:CDS 20.0%
!!! ATTATTAAAAAAGGCTTTGT+TGG + chr1.4:61822100-61822119 MS.gene004823:CDS 20.0%
!!! CCTTTTTTAATAATTGAAGT+TGG - chr1.4:61822094-61822113 None:intergenic 20.0%
! CTATGATTGTATCAACATTT+GGG - chr1.4:61821854-61821873 None:intergenic 25.0%
! TCTATGATTGTATCAACATT+TGG - chr1.4:61821855-61821874 None:intergenic 25.0%
TCCAATTGAATGGATGAATA+GGG + chr1.4:61822067-61822086 MS.gene004823:CDS 30.0%
TTGGATCTTAAGAAACGTAT+TGG + chr1.4:61822119-61822138 MS.gene004823:CDS 30.0%
ACCCTATTCATCCATTCAAT+TGG - chr1.4:61822071-61822090 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG - chr1.4:61821787-61821806 None:intergenic 35.0%
GACTCAAATTAATGATGCAC+TGG + chr1.4:61821971-61821990 MS.gene004823:CDS 35.0%
GTCCAATTGAATGGATGAAT+AGG + chr1.4:61822066-61822085 MS.gene004823:CDS 35.0%
TCTAGCGGAAAGAAAAATCA+AGG + chr1.4:61821657-61821676 MS.gene004823:CDS 35.0%
! AGAAGAATGAGGCTCAATTT+TGG + chr1.4:61822036-61822055 MS.gene004823:CDS 35.0%
AAACGTATTGGACAACATGC+TGG + chr1.4:61822131-61822150 MS.gene004823:CDS 40.0%
AATGAAAACACCTTCTCACC+AGG - chr1.4:61821825-61821844 None:intergenic 40.0%
CAAGTACCACCTCAAAACAA+TGG + chr1.4:61821888-61821907 MS.gene004823:CDS 40.0%
CGATTTGCGTAAGAAGAATG+AGG + chr1.4:61822025-61822044 MS.gene004823:CDS 40.0%
GAGCAATATATGCACCACAA+AGG - chr1.4:61821788-61821807 None:intergenic 40.0%
TATTGGACAACATGCTGGTA+TGG + chr1.4:61822136-61822155 MS.gene004823:CDS 40.0%
! AGAATGAGGCTCAATTTTGG+TGG + chr1.4:61822039-61822058 MS.gene004823:CDS 40.0%
!! GAATGAGGCTCAATTTTGGT+GGG + chr1.4:61822040-61822059 MS.gene004823:CDS 40.0%
!!! GGTGAGAAGGTGTTTTCATT+TGG + chr1.4:61821825-61821844 MS.gene004823:CDS 40.0%
ACTCATTCTCACGCTTCTTC+TGG - chr1.4:61822001-61822020 None:intergenic 45.0%
GCTCTCATTGTATTCTCACC+TGG + chr1.4:61821804-61821823 MS.gene004823:CDS 45.0%
GTAAGCCTCAACGAATTGCA+TGG - chr1.4:61821916-61821935 None:intergenic 45.0%
TGTATTCTCACCTGGTGAGA+AGG + chr1.4:61821812-61821831 MS.gene004823:CDS 45.0%
!!! ATGGTGCCATTGTTTTGAGG+TGG - chr1.4:61821897-61821916 None:intergenic 45.0%
!!! TGCATGGTGCCATTGTTTTG+AGG - chr1.4:61821900-61821919 None:intergenic 45.0%
AGTGGCCTCTTCAAGAAAGC+TGG + chr1.4:61821750-61821769 MS.gene004823:CDS 50.0%
GCTCGCACAATTTAGCGCTA+CGG - chr1.4:61821938-61821957 None:intergenic 50.0%
TGGCACCATGCAATTCGTTG+AGG + chr1.4:61821908-61821927 MS.gene004823:CDS 50.0%
! GGTGGGCTTGTCCAATTGAA+TGG + chr1.4:61822057-61822076 MS.gene004823:CDS 50.0%
!! ACTTTCTCGAAGCGTCGTAG+TGG + chr1.4:61821732-61821751 MS.gene004823:CDS 50.0%
GCTCGCCAGCTTTCTTGAAG+AGG - chr1.4:61821758-61821777 None:intergenic 55.0%
GGCGAGCTTTGCACCCTTTG+TGG + chr1.4:61821771-61821790 MS.gene004823:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 61821654 61822169 61821654 ID=MS.gene004823
chr1.4 mRNA 61821654 61822169 61821654 ID=MS.gene004823.t1;Parent=MS.gene004823
chr1.4 exon 61821654 61822169 61821654 ID=MS.gene004823.t1.exon1;Parent=MS.gene004823.t1
chr1.4 CDS 61821654 61822169 61821654 ID=cds.MS.gene004823.t1;Parent=MS.gene004823.t1
Gene Sequence

>MS.gene004823

ATGTCTAGCGGAAAGAAAAATCAAGGTCGCCAAAAAATTGACATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGCCTCTTCAAGAAAGCTGGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTCATTGTATTCTCACCTGGTGAGAAGGTGTTTTCATTTGGTTACCCAAATGTTGATACAATCATAGATCGTTATCTCTCTCAAGTACCACCTCAAAACAATGGCACCATGCAATTCGTTGAGGCTTACCGTAGCGCTAAATTGTGCGAGCTTAATGCTATGCTGACTCAAATTAATGATGCACTGGACATCCAGAAGAAGCGTGAGAATGAGTTGAGCGATTTGCGTAAGAAGAATGAGGCTCAATTTTGGTGGGCTTGTCCAATTGAATGGATGAATAGGGTCCAACTTCAATTATTAAAAAAGGCTTTGTTGGATCTTAAGAAACGTATTGGACAACATGCTGGTATGGTTGTAAGTTAG
Protein sequence

>MS.gene004823.t1

MSSGKKNQGRQKIDMKKMSNESNLQVTFSKRRSGLFKKAGELCTLCGAYIALIVFSPGEKVFSFGYPNVDTIIDRYLSQVPPQNNGTMQFVEAYRSAKLCELNAMLTQINDALDIQKKRENELSDLRKKNEAQFWWACPIEWMNRVQLQLLKKALLDLKKRIGQHAGMVVS