AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene004824

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004824.t1 MTR_1g075600 91.561 237 20 0 1 237 1 237 6.37e-154 427
MS.gene004824.t1 MTR_1g077360 86.222 225 31 0 1 225 1 225 4.30e-144 402
MS.gene004824.t1 MTR_5g055100 70.042 237 71 0 1 237 1 237 6.93e-122 346
MS.gene004824.t1 MTR_2g085280 69.068 236 73 0 1 236 1 236 2.67e-117 334
MS.gene004824.t1 MTR_2g085250 69.068 236 73 0 1 236 1 236 1.03e-116 333
MS.gene004824.t1 MTR_8g043650 66.667 237 79 0 1 237 1 237 2.43e-115 330
MS.gene004824.t1 MTR_2g030740 69.198 237 73 0 1 237 1 237 7.15e-111 318
MS.gene004824.t1 MTR_1g105920 69.863 219 66 0 1 219 1 219 7.72e-111 318
MS.gene004824.t1 MTR_1g012570 67.932 237 76 0 1 237 1 237 3.56e-109 314
MS.gene004824.t1 MTR_1g105910 66.222 225 76 0 1 225 1 225 4.71e-108 311
MS.gene004824.t1 MTR_5g045560 67.556 225 73 0 1 225 1 225 5.09e-108 311
MS.gene004824.t1 MTR_5g053390 68.000 225 72 0 1 225 1 225 2.28e-107 309
MS.gene004824.t1 MTR_3g030770 65.106 235 64 3 1 225 1 227 1.14e-104 302
MS.gene004824.t1 MTR_1g108510 65.106 235 64 3 1 225 1 227 1.92e-104 301
MS.gene004824.t1 MTR_3g052920 68.018 222 71 0 1 222 1 222 1.52e-103 300
MS.gene004824.t1 MTR_0121s0080 61.603 237 90 1 1 237 1 236 1.39e-102 297
MS.gene004824.t1 MTR_2g093190 63.404 235 68 3 1 225 1 227 1.98e-99 289
MS.gene004824.t1 MTR_1g105905 63.182 220 81 0 18 237 1 220 2.10e-99 288
MS.gene004824.t1 MTR_1g108580 61.712 222 75 2 1 220 1 214 8.62e-96 280
MS.gene004824.t1 MTR_3g052870 64.384 219 59 2 1 219 1 200 1.59e-93 273
MS.gene004824.t1 MTR_1g106070 68.681 182 57 0 1 182 1 182 9.45e-90 263
MS.gene004824.t1 MTR_7g062350 58.296 223 91 2 16 237 27 248 3.08e-85 253
MS.gene004824.t1 MTR_1g075570 76.966 178 27 1 18 195 1 164 2.29e-82 243
MS.gene004824.t1 MTR_0121s0100 70.543 129 38 0 1 129 1 129 5.17e-57 178
MS.gene004824.t1 MTR_3g030780 67.969 128 41 0 1 128 1 128 3.36e-55 173
MS.gene004824.t1 MTR_3g080940 52.597 154 73 0 9 162 9 162 2.35e-52 168
MS.gene004824.t1 MTR_3g067910 72.816 103 28 0 21 123 2 104 2.24e-49 157
MS.gene004824.t1 MTR_2g105290 37.870 169 95 2 5 170 8 169 1.22e-31 114
MS.gene004824.t1 MTR_8g086290 38.037 163 91 2 5 164 8 163 2.94e-31 113
MS.gene004824.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 1.13e-27 100
MS.gene004824.t1 MTR_7g028448 39.161 143 75 3 22 164 25 155 4.17e-26 100
MS.gene004824.t1 MTR_4g036915 39.161 143 75 3 22 164 25 155 4.17e-26 100
MS.gene004824.t1 MTR_1g108500 57.732 97 20 1 22 118 110 185 5.37e-26 103
MS.gene004824.t1 MTR_3g067915 52.128 94 45 0 33 126 3 96 4.51e-25 95.1
MS.gene004824.t1 MTR_4g127140 37.989 179 91 5 5 170 8 179 6.07e-25 97.4
MS.gene004824.t1 MTR_3g067870 66.176 68 23 0 16 83 83 150 6.59e-23 91.3
MS.gene004824.t1 MTR_1g047550 56.338 71 31 0 9 79 2 72 6.80e-22 89.4
MS.gene004824.t1 MTR_4g131030 41.803 122 52 3 9 111 2 123 1.35e-21 89.4
MS.gene004824.t1 MTR_8g079502 54.930 71 32 0 9 79 2 72 4.48e-21 87.4
MS.gene004824.t1 MTR_8g051580 41.228 114 62 1 9 122 2 110 6.68e-21 86.7
MS.gene004824.t1 MTR_1g054265 49.367 79 40 0 9 87 2 80 2.71e-20 84.7
MS.gene004824.t1 MTR_1g063160 43.810 105 57 2 9 111 2 106 5.30e-20 84.3
MS.gene004824.t1 MTR_8g046350 49.383 81 40 1 9 89 2 81 2.63e-19 82.0
MS.gene004824.t1 MTR_4g102530 48.148 81 39 1 10 87 3 83 3.03e-18 80.5
MS.gene004824.t1 MTR_4g093970 59.091 66 27 0 10 75 29 94 3.43e-18 80.9
MS.gene004824.t1 MTR_4g094638 53.623 69 32 0 9 77 2 70 9.34e-18 78.2
MS.gene004824.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 9.38e-18 79.3
MS.gene004824.t1 MTR_8g033220 28.889 225 128 7 10 220 3 209 1.58e-17 79.0
MS.gene004824.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 1.69e-17 79.0
MS.gene004824.t1 MTR_8g033220 47.368 76 40 0 10 85 3 78 1.90e-17 78.6
MS.gene004824.t1 MTR_4g094632 39.048 105 62 1 9 113 2 104 5.86e-17 75.9
MS.gene004824.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 7.72e-17 77.4
MS.gene004824.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 1.48e-16 75.5
MS.gene004824.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 1.73e-16 76.6
MS.gene004824.t1 MTR_1g053070 48.148 81 42 0 9 89 2 82 2.36e-16 76.3
MS.gene004824.t1 MTR_0003s0590 31.973 147 69 2 9 124 2 148 3.31e-16 75.9
MS.gene004824.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.35e-16 75.5
MS.gene004824.t1 MTR_7g075870 32.903 155 71 4 10 131 3 157 5.44e-16 74.3
MS.gene004824.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 7.29e-16 75.1
MS.gene004824.t1 MTR_2g009890 47.887 71 37 0 9 79 2 72 9.28e-16 74.7
MS.gene004824.t1 MTR_5g066180 45.588 68 37 0 9 76 2 69 1.14e-15 73.9
MS.gene004824.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.22e-15 73.9
MS.gene004824.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.50e-15 73.9
MS.gene004824.t1 MTR_5g032150 47.059 68 36 0 9 76 2 69 1.61e-15 73.6
MS.gene004824.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 1.74e-15 73.2
MS.gene004824.t1 MTR_5g021270 40.179 112 59 4 9 114 2 111 2.73e-15 72.8
MS.gene004824.t1 MTR_5g021270 40.179 112 59 4 9 114 2 111 2.80e-15 72.8
MS.gene004824.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 3.45e-15 68.2
MS.gene004824.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 4.48e-15 72.4
MS.gene004824.t1 MTR_3g102570 42.857 105 57 3 9 112 2 104 4.93e-15 73.2
MS.gene004824.t1 MTR_7g075870 32.692 156 71 5 10 131 3 158 8.05e-15 71.2
MS.gene004824.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 8.23e-15 70.5
MS.gene004824.t1 MTR_4g084740 50.704 71 34 1 9 78 2 72 1.19e-14 72.4
MS.gene004824.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 1.30e-14 70.9
MS.gene004824.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 1.30e-14 71.2
MS.gene004824.t1 MTR_8g066260 31.507 146 70 3 9 124 2 147 1.94e-14 70.5
MS.gene004824.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 2.46e-14 67.4
MS.gene004824.t1 MTR_7g016630 43.056 72 40 1 9 79 2 73 2.63e-14 70.5
MS.gene004824.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 2.70e-14 68.9
MS.gene004824.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 4.51e-14 69.7
MS.gene004824.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 4.57e-14 65.1
MS.gene004824.t1 MTR_5g046790 50.877 57 28 0 9 65 2 58 5.45e-14 68.9
MS.gene004824.t1 MTR_7g075850 48.571 70 34 1 9 76 2 71 7.84e-14 69.3
MS.gene004824.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.67e-14 68.9
MS.gene004824.t1 MTR_8g022970 30.233 172 93 6 2 159 9 167 1.20e-13 67.4
MS.gene004824.t1 MTR_4g109810 50.877 57 28 0 9 65 2 58 1.76e-13 68.2
MS.gene004824.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 1.95e-13 67.8
MS.gene004824.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.21e-13 67.4
MS.gene004824.t1 MTR_4g093030 46.774 62 33 0 9 70 2 63 2.07e-12 63.5
MS.gene004824.t1 MTR_1g041615 35.514 107 56 2 20 126 17 110 2.66e-11 60.1
MS.gene004824.t1 MTR_3g437790 29.655 145 81 4 26 159 30 164 4.82e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene004824.t1 AT5G60440 48.421 190 89 4 5 190 3 187 4.84e-50 166
MS.gene004824.t1 AT1G01530 42.105 190 102 3 4 192 2 184 8.30e-41 140
MS.gene004824.t1 AT4G36590 40.171 234 121 7 5 226 3 229 3.76e-39 136
MS.gene004824.t1 AT2G24840 47.853 163 78 3 9 167 63 222 1.11e-38 135
MS.gene004824.t1 AT1G65360 38.362 232 114 9 5 223 3 218 2.84e-36 128
MS.gene004824.t1 AT3G04100 30.114 176 107 3 2 167 7 176 7.46e-26 100
MS.gene004824.t1 AT1G72350 34.483 174 80 5 9 182 43 182 2.47e-23 94.4
MS.gene004824.t1 AT2G34440 42.342 111 63 1 9 119 2 111 2.70e-22 90.1
MS.gene004824.t1 AT3G66656 37.815 119 70 1 9 123 2 120 6.98e-20 84.0
MS.gene004824.t1 AT1G29962 28.571 175 119 3 5 173 4 178 2.16e-19 82.8
MS.gene004824.t1 AT5G62165 36.364 143 62 4 10 123 3 145 1.90e-18 79.7
MS.gene004824.t1 AT5G62165 36.364 143 62 4 10 123 3 145 1.90e-18 79.7
MS.gene004824.t1 AT5G62165 36.364 143 62 4 10 123 3 145 1.90e-18 79.7
MS.gene004824.t1 AT5G51870 31.746 189 82 5 10 168 3 174 3.01e-18 80.5
MS.gene004824.t1 AT5G51870 36.806 144 61 3 10 123 3 146 5.82e-18 80.1
MS.gene004824.t1 AT4G22950 47.222 72 38 0 10 81 3 74 5.97e-18 79.0
MS.gene004824.t1 AT5G62165 35.417 144 64 4 10 124 3 146 6.45e-18 78.2
MS.gene004824.t1 AT5G62165 35.417 144 64 4 10 124 3 146 6.45e-18 78.2
MS.gene004824.t1 AT5G62165 35.417 144 64 4 10 124 3 146 6.45e-18 78.2
MS.gene004824.t1 AT5G62165 35.417 144 64 4 10 124 3 146 6.45e-18 78.2
MS.gene004824.t1 AT5G62165 35.417 144 64 4 10 124 3 146 6.45e-18 78.2
MS.gene004824.t1 AT5G51870 36.806 144 61 3 10 123 13 156 6.47e-18 80.1
MS.gene004824.t1 AT2G45660 51.471 68 33 0 10 77 3 70 8.48e-18 78.2
MS.gene004824.t1 AT2G45650 52.941 68 32 0 9 76 2 69 8.86e-18 80.1
MS.gene004824.t1 AT5G10140 52.174 69 32 1 9 76 2 70 9.08e-18 78.2
MS.gene004824.t1 AT5G62165 35.664 143 63 3 10 123 3 145 9.14e-18 79.3
MS.gene004824.t1 AT5G62165 35.664 143 63 3 10 123 3 145 9.14e-18 79.3
MS.gene004824.t1 AT5G62165 35.664 143 63 3 10 123 3 145 9.14e-18 79.3
MS.gene004824.t1 AT4G09960 43.878 98 50 2 9 101 2 99 9.50e-18 79.3
MS.gene004824.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.01e-17 78.6
MS.gene004824.t1 AT4G09960 43.878 98 50 2 9 101 2 99 1.08e-17 79.3
MS.gene004824.t1 AT4G09960 43.878 98 50 2 9 101 3 100 1.11e-17 79.3
MS.gene004824.t1 AT4G22950 38.400 125 73 2 10 133 3 124 1.11e-17 79.3
MS.gene004824.t1 AT4G22950 38.400 125 73 2 10 133 3 124 1.11e-17 79.3
MS.gene004824.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.20e-17 78.6
MS.gene004824.t1 AT4G09960 43.878 98 50 2 9 101 12 109 1.59e-17 79.3
MS.gene004824.t1 AT5G62165 34.375 160 71 4 10 135 3 162 1.73e-17 78.2
MS.gene004824.t1 AT5G62165 34.375 160 71 4 10 135 3 162 1.73e-17 78.2
MS.gene004824.t1 AT2G45660 51.471 68 33 0 10 77 3 70 1.90e-17 78.6
MS.gene004824.t1 AT5G10140 52.174 69 32 1 9 76 2 70 2.27e-17 77.4
MS.gene004824.t1 AT5G51870 35.616 146 64 3 5 120 21 166 2.48e-17 77.8
MS.gene004824.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.59e-17 75.1
MS.gene004824.t1 AT4G09960 43.878 98 50 2 9 101 28 125 2.76e-17 79.0
MS.gene004824.t1 AT5G51870 36.170 141 60 3 10 120 3 143 2.96e-17 77.0
MS.gene004824.t1 AT5G51860 31.579 190 89 4 10 169 3 181 4.40e-17 77.4
MS.gene004824.t1 AT4G18960 43.810 105 54 2 2 101 11 115 5.04e-17 78.2
MS.gene004824.t1 AT4G09960 43.878 98 50 2 9 101 97 194 6.22e-17 79.0
MS.gene004824.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.89e-17 75.1
MS.gene004824.t1 AT3G54340 42.342 111 57 4 9 114 2 110 9.34e-17 77.0
MS.gene004824.t1 AT1G28460 27.907 172 121 1 5 173 4 175 9.68e-17 75.9
MS.gene004824.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.00e-16 76.3
MS.gene004824.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.47e-16 76.6
MS.gene004824.t1 AT2G22540 50.000 68 34 0 9 76 2 69 1.47e-16 76.6
MS.gene004824.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.84e-16 76.3
MS.gene004824.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.84e-16 76.3
MS.gene004824.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.22e-16 76.6
MS.gene004824.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.41e-16 76.3
MS.gene004824.t1 AT4G37940 48.529 68 35 0 9 76 2 69 3.68e-16 75.1
MS.gene004824.t1 AT4G37940 48.529 68 35 0 9 76 2 69 4.00e-16 74.7
MS.gene004824.t1 AT4G37940 48.529 68 35 0 9 76 2 69 5.16e-16 73.6
MS.gene004824.t1 AT2G42830 44.737 76 42 0 1 76 9 84 5.47e-16 75.1
MS.gene004824.t1 AT2G42830 44.737 76 42 0 1 76 9 84 5.75e-16 75.1
MS.gene004824.t1 AT2G22630 48.529 68 35 0 9 76 2 69 6.21e-16 74.7
MS.gene004824.t1 AT2G22630 48.529 68 35 0 9 76 2 69 6.21e-16 74.7
MS.gene004824.t1 AT1G28450 28.000 175 120 3 5 173 4 178 6.93e-16 73.6
MS.gene004824.t1 AT3G57390 50.000 68 34 0 9 76 2 69 6.95e-16 74.3
MS.gene004824.t1 AT3G58780 48.529 68 35 0 9 76 17 84 7.55e-16 74.7
MS.gene004824.t1 AT4G24540 50.000 68 34 0 9 76 2 69 7.92e-16 74.3
MS.gene004824.t1 AT1G22130 41.414 99 57 1 9 106 2 100 8.18e-16 75.9
MS.gene004824.t1 AT3G58780 48.529 68 35 0 9 76 23 90 8.98e-16 74.7
MS.gene004824.t1 AT1G77980 45.455 88 47 1 9 95 2 89 9.18e-16 75.5
MS.gene004824.t1 AT5G23260 52.000 75 34 1 5 77 14 88 1.13e-15 74.7
MS.gene004824.t1 AT3G30260 32.192 146 69 5 9 124 2 147 1.17e-15 74.3
MS.gene004824.t1 AT5G23260 52.000 75 34 1 5 77 14 88 1.19e-15 74.3
MS.gene004824.t1 AT3G58780 45.333 75 41 0 2 76 10 84 1.51e-15 74.3
MS.gene004824.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.52e-15 73.9
MS.gene004824.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.88e-15 71.6
MS.gene004824.t1 AT5G60910 49.315 73 33 1 9 77 2 74 3.63e-15 72.8
MS.gene004824.t1 AT5G23260 53.521 71 31 1 9 77 2 72 3.72e-15 72.8
MS.gene004824.t1 AT5G23260 53.521 71 31 1 9 77 2 72 3.87e-15 72.8
MS.gene004824.t1 AT2G22540 50.000 68 29 1 9 76 2 64 4.48e-15 72.4
MS.gene004824.t1 AT5G65050 33.571 140 67 5 9 124 2 139 4.61e-15 71.2
MS.gene004824.t1 AT5G65050 33.571 140 67 5 9 124 2 139 5.03e-15 71.6
MS.gene004824.t1 AT5G65050 34.328 134 63 5 9 124 2 128 5.46e-15 71.2
MS.gene004824.t1 AT1G77950 47.887 71 36 1 9 78 2 72 5.61e-15 72.4
MS.gene004824.t1 AT1G77950 47.887 71 36 1 9 78 2 72 5.61e-15 72.4
MS.gene004824.t1 AT1G77950 47.887 71 36 1 9 78 2 72 5.61e-15 72.4
MS.gene004824.t1 AT1G77950 47.887 71 36 1 9 78 2 72 5.61e-15 72.4
MS.gene004824.t1 AT4G11880 47.222 72 37 1 10 80 3 74 5.61e-15 70.9
MS.gene004824.t1 AT4G11880 47.222 72 37 1 10 80 3 74 5.61e-15 70.9
MS.gene004824.t1 AT3G61120 50.000 68 34 0 9 76 2 69 7.77e-15 72.0
MS.gene004824.t1 AT4G11880 47.222 72 37 1 10 80 3 74 8.40e-15 71.2
MS.gene004824.t1 AT4G11880 47.222 72 37 1 10 80 3 74 8.40e-15 71.2
MS.gene004824.t1 AT1G47760 38.835 103 49 2 9 111 2 90 8.41e-15 70.5
MS.gene004824.t1 AT1G17310 51.899 79 36 1 8 86 47 123 9.18e-15 71.2
MS.gene004824.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.00e-14 71.6
MS.gene004824.t1 AT1G69120 31.757 148 83 4 9 155 2 132 1.04e-14 71.2
MS.gene004824.t1 AT1G17310 51.899 79 36 1 8 86 58 134 1.27e-14 70.9
MS.gene004824.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.29e-14 69.3
MS.gene004824.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.37e-14 71.2
MS.gene004824.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.42e-14 70.9
MS.gene004824.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.60e-14 70.5
MS.gene004824.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.66e-14 71.2
MS.gene004824.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.78e-14 70.9
MS.gene004824.t1 AT1G69120 31.757 148 83 4 9 155 2 132 1.96e-14 70.9
MS.gene004824.t1 AT5G65070 33.557 149 86 4 9 152 2 142 2.28e-14 68.6
MS.gene004824.t1 AT5G65060 46.377 69 36 1 9 76 2 70 3.58e-14 68.9
MS.gene004824.t1 AT5G65070 43.478 69 38 1 9 76 2 70 4.01e-14 68.9
MS.gene004824.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.02e-14 68.9
MS.gene004824.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.29e-14 68.9
MS.gene004824.t1 AT2G03710 55.357 56 25 0 9 64 2 57 4.95e-14 68.6
MS.gene004824.t1 AT3G02310 46.377 69 36 1 9 76 2 70 7.30e-14 68.6
MS.gene004824.t1 AT3G02310 46.377 69 36 1 9 76 2 70 7.44e-14 69.3
MS.gene004824.t1 AT5G65070 43.478 69 38 1 9 76 2 70 8.76e-14 68.9
MS.gene004824.t1 AT3G58780 29.213 178 91 4 9 164 17 181 1.00e-13 68.9
MS.gene004824.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.03e-13 68.9
MS.gene004824.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.06e-13 68.6
MS.gene004824.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.08e-13 68.9
MS.gene004824.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.19e-13 68.2
MS.gene004824.t1 AT2G03710 55.357 56 25 0 9 64 2 57 1.31e-13 68.6
MS.gene004824.t1 AT2G03710 55.357 56 25 0 9 64 2 57 1.36e-13 68.6
MS.gene004824.t1 AT3G58780 46.875 64 34 0 2 65 10 73 2.11e-13 68.2
MS.gene004824.t1 AT5G65080 30.345 145 80 4 1 124 1 145 5.26e-13 66.2
MS.gene004824.t1 AT5G65070 46.667 60 32 0 9 68 2 61 6.05e-13 66.6
MS.gene004824.t1 AT5G65080 29.452 146 81 4 1 124 1 146 6.91e-13 65.5
MS.gene004824.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.04e-12 65.5
MS.gene004824.t1 AT5G27130 48.148 81 37 3 5 81 10 89 1.27e-12 66.2
MS.gene004824.t1 AT5G49490 29.461 241 105 11 5 215 41 246 8.77e-12 63.9
MS.gene004824.t1 AT1G46408 36.000 125 71 5 7 122 2 126 2.72e-11 62.4
MS.gene004824.t1 AT2G26320 40.541 74 42 1 5 76 14 87 3.23e-11 58.9
MS.gene004824.t1 AT4G37435 48.214 56 29 0 9 64 2 57 7.02e-11 60.1
MS.gene004824.t1 AT1G77080 49.275 69 34 1 9 76 2 70 8.15e-11 59.3
MS.gene004824.t1 AT1G77080 49.275 69 34 1 9 76 2 70 8.57e-11 59.3

Find 54 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCATTAAGCTCACGCAATT+TGG 0.258480 1.4:-61845279 None:intergenic
ATTGAAGCTTCTTGATGATT+TGG 0.278070 1.4:-61845578 None:intergenic
ATTGCAAGATCCCATTGTTT+TGG 0.301551 1.4:-61845235 None:intergenic
TTGTTTGGTTTCAACAATAT+AGG 0.376703 1.4:+61845644 MS.gene004824:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.378424 1.4:+61845107 MS.gene004824:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1.4:+61845629 MS.gene004824:CDS
GACCTTATCCATCCCTTCAA+TGG 0.393032 1.4:-61845405 None:intergenic
TGTTGGTATGGTTGTAAGTC+AGG 0.400193 1.4:+61845484 MS.gene004824:CDS
TCTATGACCGTATAAACATC+TGG 0.408099 1.4:-61845188 None:intergenic
TGGCTACCCAGATGTTTATA+CGG 0.408391 1.4:+61845181 MS.gene004824:CDS
TGGTGGGCTTGTCCCATTGA+AGG 0.408921 1.4:+61845392 MS.gene004824:CDS
AGAAGAATGAGGCTCAGTTT+TGG 0.412014 1.4:+61845372 MS.gene004824:CDS
GATGGTGGACATGGTCCCTC+TGG 0.456482 1.4:+61845671 MS.gene004824:CDS
AAGCTTCTTGATGATTTGGC+TGG 0.457989 1.4:-61845574 None:intergenic
ACCTTATCCATCCCTTCAAT+GGG 0.468641 1.4:-61845404 None:intergenic
CATAGACCGTTATCTCTCTC+AGG 0.489608 1.4:+61845205 MS.gene004824:CDS
AACAAATGAGGTTGCAACAT+AGG 0.496587 1.4:-61845626 None:intergenic
TGTATTCTCACCTAGTGATA+AGG 0.498147 1.4:+61845148 MS.gene004824:CDS
TCCCATTGAAGGGATGGATA+AGG 0.507796 1.4:+61845403 MS.gene004824:CDS
AGCAATATATGCACCACAAA+GGG 0.513172 1.4:-61845120 None:intergenic
AGGTCCCACTCCAAAACAAT+GGG 0.517473 1.4:+61845225 MS.gene004824:CDS
ACAAATGAGGTTGCAACATA+GGG 0.527904 1.4:-61845625 None:intergenic
GGCTTGTCCCATTGAAGGGA+TGG 0.531760 1.4:+61845397 MS.gene004824:CDS
TTTGGTTTCAACAATATAGG+AGG 0.541850 1.4:+61845647 MS.gene004824:CDS
GGTGGGCTTGTCCCATTGAA+GGG 0.542115 1.4:+61845393 MS.gene004824:CDS
TTCAACAATATAGGAGGAGA+TGG 0.553417 1.4:+61845653 MS.gene004824:CDS
AATTGTAGAACATGTTGGTA+TGG 0.554760 1.4:+61845472 MS.gene004824:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.4:-61845638 None:intergenic
GTGGGACCTGAGAGAGATAA+CGG 0.559782 1.4:-61845211 None:intergenic
CAGGTCCCACTCCAAAACAA+TGG 0.563813 1.4:+61845224 MS.gene004824:CDS
TGATTTGGCTGGTGCTCGAT+AGG 0.567200 1.4:-61845563 None:intergenic
ACTTTCTCGAAGCGTCGTAG+TGG 0.570157 1.4:+61845068 MS.gene004824:CDS
ATCATGTCGAGTGGAAAGAA+AGG 0.570415 1.4:+61844987 None:intergenic
TGGGATCTTGCAATTCATTG+AGG 0.581064 1.4:+61845244 MS.gene004824:CDS
ACTCAAATCAACGATGCACT+AGG 0.586796 1.4:+61845308 MS.gene004824:CDS
CGATTTATGCAAGAAGAATG+AGG 0.588461 1.4:+61845361 MS.gene004824:CDS
ATAGGGTTCTGACAAAATCC+AGG 0.592191 1.4:-61845608 None:intergenic
GTGCTCGATAGGCATGGTAG+AGG 0.592462 1.4:-61845552 None:intergenic
TGTGCTTCAATCATGTCGAG+TGG 0.596376 1.4:+61844978 None:intergenic
CTATGACCGTATAAACATCT+GGG 0.596633 1.4:-61845187 None:intergenic
AAACAAATTGTAGAACATGT+TGG 0.599431 1.4:+61845467 MS.gene004824:CDS
GTTGGTATGGTTGTAAGTCA+GGG 0.608714 1.4:+61845485 MS.gene004824:CDS
ATAGGAGGAGATGGTGGACA+TGG 0.613263 1.4:+61845662 MS.gene004824:CDS
GGTTCTGACAAAATCCAGGC+GGG 0.613799 1.4:-61845604 None:intergenic
AACAATATAGGAGGAGATGG+TGG 0.621356 1.4:+61845656 MS.gene004824:CDS
AATGAAAACACCTTATCACT+AGG 0.625532 1.4:-61845158 None:intergenic
TGGCTGGTGCTCGATAGGCA+TGG 0.627452 1.4:-61845558 None:intergenic
TCGAGTGGAAAGAAAGGTCA+AGG 0.628900 1.4:+61844993 MS.gene004824:CDS
GAGCAATATATGCACCACAA+AGG 0.643897 1.4:-61845121 None:intergenic
GCTCACGCAATTTGGCGCTG+CGG 0.649229 1.4:-61845271 None:intergenic
TTGGTATGGTTGTAAGTCAG+GGG 0.657692 1.4:+61845486 MS.gene004824:CDS
TTGGATCAATAGAATCCAGA+GGG 0.672575 1.4:-61845686 None:intergenic
CTTGGATCAATAGAATCCAG+AGG 0.702259 1.4:-61845687 None:intergenic
GGGTTCTGACAAAATCCAGG+CGG 0.715161 1.4:-61845605 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTGAAAAATGCTTTGT+TGG + chr1.4:61845436-61845455 MS.gene004824:CDS 20.0%
!!! CATTTTTCAATAATTGAAGT+TGG - chr1.4:61845430-61845449 None:intergenic 20.0%
! AAACAAATTGTAGAACATGT+TGG + chr1.4:61845467-61845486 MS.gene004824:CDS 25.0%
!! TTGTTTGGTTTCAACAATAT+AGG + chr1.4:61845644-61845663 MS.gene004824:CDS 25.0%
AATGAAAACACCTTATCACT+AGG - chr1.4:61845161-61845180 None:intergenic 30.0%
AATTGTAGAACATGTTGGTA+TGG + chr1.4:61845472-61845491 MS.gene004824:CDS 30.0%
TTGTTGAAACCAAACAAATG+AGG - chr1.4:61845641-61845660 None:intergenic 30.0%
! ATTGAAGCTTCTTGATGATT+TGG - chr1.4:61845581-61845600 None:intergenic 30.0%
! TTTGGTTTCAACAATATAGG+AGG + chr1.4:61845647-61845666 MS.gene004824:CDS 30.0%
!! AGTGATAAGGTGTTTTCATT+TGG + chr1.4:61845161-61845180 MS.gene004824:CDS 30.0%
AACAAAAAACGGAAGGGTTT+GGG - chr1.4:61845519-61845538 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+AGG - chr1.4:61845629-61845648 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG - chr1.4:61845628-61845647 None:intergenic 35.0%
AGCAATATATGCACCACAAA+GGG - chr1.4:61845123-61845142 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG + chr1.4:61845629-61845648 MS.gene004824:CDS 35.0%
ATTGCCAACAAAAAACGGAA+GGG - chr1.4:61845525-61845544 None:intergenic 35.0%
CGATTTATGCAAGAAGAATG+AGG + chr1.4:61845361-61845380 MS.gene004824:CDS 35.0%
CTATGACCGTATAAACATCT+GGG - chr1.4:61845190-61845209 None:intergenic 35.0%
GAACCATTGCCAACAAAAAA+CGG - chr1.4:61845530-61845549 None:intergenic 35.0%
TCTATGACCGTATAAACATC+TGG - chr1.4:61845191-61845210 None:intergenic 35.0%
TGTATTCTCACCTAGTGATA+AGG + chr1.4:61845148-61845167 MS.gene004824:CDS 35.0%
TTCAACAATATAGGAGGAGA+TGG + chr1.4:61845653-61845672 MS.gene004824:CDS 35.0%
! ATTGCAAGATCCCATTGTTT+TGG - chr1.4:61845238-61845257 None:intergenic 35.0%
AACAATATAGGAGGAGATGG+TGG + chr1.4:61845656-61845675 MS.gene004824:CDS 40.0%
ACCTTATCCATCCCTTCAAT+GGG - chr1.4:61845407-61845426 None:intergenic 40.0%
ACTCAAATCAACGATGCACT+AGG + chr1.4:61845308-61845327 MS.gene004824:CDS 40.0%
AGCATTAAGCTCACGCAATT+TGG - chr1.4:61845282-61845301 None:intergenic 40.0%
CAACAAAAAACGGAAGGGTT+TGG - chr1.4:61845520-61845539 None:intergenic 40.0%
CATTGCCAACAAAAAACGGA+AGG - chr1.4:61845526-61845545 None:intergenic 40.0%
GAGCAATATATGCACCACAA+AGG - chr1.4:61845124-61845143 None:intergenic 40.0%
GTTGGTATGGTTGTAAGTCA+GGG + chr1.4:61845485-61845504 MS.gene004824:CDS 40.0%
TGGCTACCCAGATGTTTATA+CGG + chr1.4:61845181-61845200 MS.gene004824:CDS 40.0%
TGGGATCTTGCAATTCATTG+AGG + chr1.4:61845244-61845263 MS.gene004824:CDS 40.0%
TGTTGGTATGGTTGTAAGTC+AGG + chr1.4:61845484-61845503 MS.gene004824:CDS 40.0%
TTGGTATGGTTGTAAGTCAG+GGG + chr1.4:61845486-61845505 MS.gene004824:CDS 40.0%
! AAGCTTCTTGATGATTTGGC+TGG - chr1.4:61845577-61845596 None:intergenic 40.0%
! AGAAGAATGAGGCTCAGTTT+TGG + chr1.4:61845372-61845391 MS.gene004824:CDS 40.0%
! ATAGGGTTCTGACAAAATCC+AGG - chr1.4:61845611-61845630 None:intergenic 40.0%
!!! AAGATCCCATTGTTTTGGAG+TGG - chr1.4:61845233-61845252 None:intergenic 40.0%
!!! AGATCCCATTGTTTTGGAGT+GGG - chr1.4:61845232-61845251 None:intergenic 40.0%
!!! CAAACCCTTCCGTTTTTTGT+TGG + chr1.4:61845518-61845537 MS.gene004824:CDS 40.0%
!!! CTTCCGTTTTTTGTTGGCAA+TGG + chr1.4:61845524-61845543 MS.gene004824:CDS 40.0%
AAAAACGGAAGGGTTTGGGT+AGG - chr1.4:61845515-61845534 None:intergenic 45.0%
AGGTCCCACTCCAAAACAAT+GGG + chr1.4:61845225-61845244 MS.gene004824:CDS 45.0%
CATAGACCGTTATCTCTCTC+AGG + chr1.4:61845205-61845224 MS.gene004824:CDS 45.0%
GACCTTATCCATCCCTTCAA+TGG - chr1.4:61845408-61845427 None:intergenic 45.0%
TCCCATTGAAGGGATGGATA+AGG + chr1.4:61845403-61845422 MS.gene004824:CDS 45.0%
TCGAGTGGAAAGAAAGGTCA+AGG + chr1.4:61844993-61845012 MS.gene004824:CDS 45.0%
!! AGAATGAGGCTCAGTTTTGG+TGG + chr1.4:61845375-61845394 MS.gene004824:CDS 45.0%
!! GAATGAGGCTCAGTTTTGGT+GGG + chr1.4:61845376-61845395 MS.gene004824:CDS 45.0%
CAGGTCCCACTCCAAAACAA+TGG + chr1.4:61845224-61845243 MS.gene004824:CDS 50.0%
GTGGGACCTGAGAGAGATAA+CGG - chr1.4:61845214-61845233 None:intergenic 50.0%
! GAAGCTTCAATTTTCCCGCC+TGG + chr1.4:61845590-61845609 MS.gene004824:CDS 50.0%
! GGGTTCTGACAAAATCCAGG+CGG - chr1.4:61845608-61845627 None:intergenic 50.0%
! GGTTCTGACAAAATCCAGGC+GGG - chr1.4:61845607-61845626 None:intergenic 50.0%
! TGATTTGGCTGGTGCTCGAT+AGG - chr1.4:61845566-61845585 None:intergenic 50.0%
!! ACTTTCTCGAAGCGTCGTAG+TGG + chr1.4:61845068-61845087 MS.gene004824:CDS 50.0%
!! ATAGGAGGAGATGGTGGACA+TGG + chr1.4:61845662-61845681 MS.gene004824:CDS 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr1.4:61845107-61845126 MS.gene004824:CDS 55.0%
GGCTTGTCCCATTGAAGGGA+TGG + chr1.4:61845397-61845416 MS.gene004824:CDS 55.0%
GTGCTCGATAGGCATGGTAG+AGG - chr1.4:61845555-61845574 None:intergenic 55.0%
! GGTGGGCTTGTCCCATTGAA+GGG + chr1.4:61845393-61845412 MS.gene004824:CDS 55.0%
!! TGGTGGGCTTGTCCCATTGA+AGG + chr1.4:61845392-61845411 MS.gene004824:CDS 55.0%
GCTCACGCAATTTGGCGCTG+CGG - chr1.4:61845274-61845293 None:intergenic 60.0%
TGGCTGGTGCTCGATAGGCA+TGG - chr1.4:61845561-61845580 None:intergenic 60.0%
!! GATGGTGGACATGGTCCCTC+TGG + chr1.4:61845671-61845690 MS.gene004824:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 61844990 61845703 61844990 ID=MS.gene004824
chr1.4 mRNA 61844990 61845703 61844990 ID=MS.gene004824.t1;Parent=MS.gene004824
chr1.4 exon 61844990 61845703 61844990 ID=MS.gene004824.t1.exon1;Parent=MS.gene004824.t1
chr1.4 CDS 61844990 61845703 61844990 ID=cds.MS.gene004824.t1;Parent=MS.gene004824.t1
Gene Sequence

>MS.gene004824

ATGTCGAGTGGAAAGAAAGGTCAAGGTCGCAAAAAAATTGAGATGAAAAAAATGAGCAACGAGAGCAATTTGCAAGTGACTTTCTCGAAGCGTCGTAGTGGACTCTTCAAGAAAGCGAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCTCTCATTGTATTCTCACCTAGTGATAAGGTGTTTTCATTTGGCTACCCAGATGTTTATACGGTCATAGACCGTTATCTCTCTCAGGTCCCACTCCAAAACAATGGGATCTTGCAATTCATTGAGGCTCACCGCAGCGCCAAATTGCGTGAGCTTAATGCTATGTTAACTCAAATCAACGATGCACTAGGCATCGAAAAGAAGCGCAAGAATGAGCTGATCGATTTATGCAAGAAGAATGAGGCTCAGTTTTGGTGGGCTTGTCCCATTGAAGGGATGGATAAGGTCCAACTTCAATTATTGAAAAATGCTTTGTTGGATCTTAAGAAACAAATTGTAGAACATGTTGGTATGGTTGTAAGTCAGGGGACTCCTACCCAAACCCTTCCGTTTTTTGTTGGCAATGGTTCGTCCTCTACCATGCCTATCGAGCACCAGCCAAATCATCAAGAAGCTTCAATTTTCCCGCCTGGATTTTGTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATAGGAGGAGATGGTGGACATGGTCCCTCTGGATTCTATTGA
Protein sequence

>MS.gene004824.t1

MSSGKKGQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIVFSPSDKVFSFGYPDVYTVIDRYLSQVPLQNNGILQFIEAHRSAKLRELNAMLTQINDALGIEKKRKNELIDLCKKNEAQFWWACPIEGMDKVQLQLLKNALLDLKKQIVEHVGMVVSQGTPTQTLPFFVGNGSSSTMPIEHQPNHQEASIFPPGFCQNPMLQPHLFGFNNIGGDGGHGPSGFY