AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005288

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005288.t1 MTR_1g083750 97.400 423 11 0 1 423 1 423 0.0 847
MS.gene005288.t1 MTR_7g112430 85.071 422 61 2 1 422 1 420 0.0 717
MS.gene005288.t1 MTR_1g083750 96.979 331 10 0 93 423 1 331 0.0 659
MS.gene005288.t1 MTR_1g110210 73.065 323 85 1 1 323 1 321 2.23e-173 488
MS.gene005288.t1 MTR_1g019760 56.341 410 177 2 14 423 11 418 2.43e-168 479
MS.gene005288.t1 MTR_7g029240 62.442 434 138 13 1 422 1 421 2.89e-166 474
MS.gene005288.t1 MTR_3g101540 55.556 414 175 3 14 422 10 419 4.60e-163 465
MS.gene005288.t1 MTR_3g101540 55.556 414 175 3 14 422 10 419 5.85e-163 465
MS.gene005288.t1 MTR_1g019760 58.960 346 140 2 14 359 11 354 2.48e-149 430
MS.gene005288.t1 MTR_1g014640 31.449 283 155 12 25 298 72 324 2.04e-28 114
MS.gene005288.t1 MTR_1g013400 31.449 283 155 12 25 298 72 324 2.04e-28 114
MS.gene005288.t1 MTR_3g105730 31.452 248 144 9 57 298 32 259 2.93e-27 110
MS.gene005288.t1 MTR_3g105730 30.924 249 144 9 57 298 54 281 4.40e-27 110
MS.gene005288.t1 MTR_1g115570 31.673 281 155 14 25 299 90 339 1.88e-25 106
MS.gene005288.t1 MTR_3g464650 29.779 272 163 11 33 297 64 314 5.14e-25 104
MS.gene005288.t1 MTR_3g464700 31.579 228 136 8 33 260 88 295 1.69e-24 103
MS.gene005288.t1 MTR_5g071550 28.625 269 164 11 36 297 127 374 1.37e-22 99.0
MS.gene005288.t1 MTR_8g463130 30.043 233 139 8 68 295 66 279 4.23e-21 93.2
MS.gene005288.t1 MTR_8g463130 30.043 233 139 8 68 295 38 251 4.53e-21 92.4
MS.gene005288.t1 MTR_2g078760 29.572 257 152 11 46 297 100 332 3.83e-20 91.3
MS.gene005288.t1 MTR_2g078760 29.572 257 152 11 46 297 21 253 4.17e-20 89.7
MS.gene005288.t1 MTR_4g125810 27.365 296 159 10 46 297 220 503 5.30e-20 92.4
MS.gene005288.t1 MTR_1g050520 31.301 246 136 7 69 299 419 646 3.01e-19 90.5
MS.gene005288.t1 MTR_3g091060 29.020 255 152 9 46 295 108 338 3.61e-19 89.0
MS.gene005288.t1 MTR_5g071550 28.636 220 137 8 36 255 127 326 5.30e-19 88.2
MS.gene005288.t1 MTR_4g094208 27.338 278 169 9 27 295 21 274 5.88e-19 86.7
MS.gene005288.t1 MTR_4g123080 30.556 252 139 10 67 299 112 346 1.06e-18 87.8
MS.gene005288.t1 MTR_4g123080 30.556 252 139 10 67 299 94 328 1.13e-18 87.4
MS.gene005288.t1 MTR_3g074610 29.032 279 163 11 27 295 26 279 3.88e-18 84.7
MS.gene005288.t1 MTR_5g024340 26.894 264 153 9 67 314 123 362 5.28e-18 85.5
MS.gene005288.t1 MTR_2g008850 25.818 275 177 9 27 295 25 278 5.50e-18 84.0
MS.gene005288.t1 MTR_2g008850 27.778 234 143 9 68 295 19 232 7.22e-18 82.8
MS.gene005288.t1 MTR_5g063940 29.749 279 161 12 27 295 26 279 1.13e-17 83.2
MS.gene005288.t1 MTR_5g063940 31.197 234 135 9 68 295 19 232 2.33e-17 81.3
MS.gene005288.t1 MTR_5g009370 29.048 210 124 7 66 265 85 279 1.26e-16 80.9
MS.gene005288.t1 MTR_4g094542 29.921 254 150 10 46 295 133 362 2.64e-16 80.5
MS.gene005288.t1 MTR_2g078760 30.332 211 120 9 46 252 100 287 2.89e-16 79.3
MS.gene005288.t1 MTR_4g116420 29.644 253 131 11 65 295 121 348 3.84e-16 80.1
MS.gene005288.t1 MTR_2g040500 25.857 321 162 10 40 297 228 535 4.68e-16 80.5
MS.gene005288.t1 MTR_8g102550 29.442 197 118 6 69 258 153 335 4.87e-16 79.7
MS.gene005288.t1 MTR_1g086350 29.104 268 153 12 66 313 14 264 5.14e-16 78.6
MS.gene005288.t1 MTR_1g015110 29.520 271 135 12 69 299 291 545 5.15e-16 80.5
MS.gene005288.t1 MTR_2g033000 31.076 251 137 10 64 295 96 329 9.81e-16 78.6
MS.gene005288.t1 MTR_3g068200 28.571 217 123 6 62 261 117 318 1.27e-15 78.6
MS.gene005288.t1 MTR_6g081850 27.723 303 166 13 26 295 34 316 2.28e-15 77.0
MS.gene005288.t1 MTR_5g042243 85.366 41 6 0 1 41 1 41 3.25e-15 72.0
MS.gene005288.t1 MTR_3g104710 27.206 272 150 8 62 297 280 539 7.20e-15 77.0
MS.gene005288.t1 MTR_1g028300 31.048 248 138 9 69 297 146 379 9.68e-15 75.9
MS.gene005288.t1 MTR_7g112490 33.898 177 95 9 116 276 183 353 1.19e-14 75.5
MS.gene005288.t1 MTR_7g112490 33.898 177 95 9 116 276 165 335 1.40e-14 75.1
MS.gene005288.t1 MTR_5g080680 28.019 207 123 7 69 262 133 326 2.89e-14 74.3
MS.gene005288.t1 MTR_7g021530 36.145 166 85 8 131 283 140 297 3.96e-14 73.6
MS.gene005288.t1 MTR_7g021530 36.145 166 85 8 131 283 190 347 9.93e-14 72.8
MS.gene005288.t1 MTR_7g021530 36.145 166 85 8 131 283 231 388 1.69e-13 72.4
MS.gene005288.t1 MTR_3g107880 27.372 274 152 11 67 320 62 308 2.36e-13 70.9
MS.gene005288.t1 MTR_3g107880 27.969 261 145 9 67 308 119 355 2.76e-13 71.2
MS.gene005288.t1 MTR_3g107880 27.969 261 145 9 67 308 120 356 2.83e-13 71.2
MS.gene005288.t1 MTR_6g087000 27.517 298 167 14 36 297 97 381 3.70e-13 72.0
MS.gene005288.t1 MTR_6g087000 27.517 298 167 14 36 297 97 381 4.00e-13 72.0
MS.gene005288.t1 MTR_4g118340 31.126 302 148 19 36 297 59 340 5.01e-13 70.5
MS.gene005288.t1 MTR_8g017240 29.949 197 113 9 100 283 136 320 7.02e-13 70.1
MS.gene005288.t1 MTR_5g005810 27.907 258 140 11 66 297 334 571 1.60e-12 69.7
MS.gene005288.t1 MTR_2g020970 27.431 288 163 12 43 297 67 341 1.86e-12 68.6
MS.gene005288.t1 MTR_4g007440 34.043 141 66 5 128 257 156 280 4.74e-12 67.4
MS.gene005288.t1 MTR_2g020970 26.829 287 166 11 43 297 67 341 5.25e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005288.t1 AT1G09160 75.118 422 103 1 1 422 1 420 0.0 645
MS.gene005288.t1 AT1G09160 75.118 422 103 1 1 422 1 420 0.0 645
MS.gene005288.t1 AT1G68410 68.434 415 127 2 11 422 16 429 0.0 578
MS.gene005288.t1 AT1G68410 68.434 415 127 2 11 422 16 429 0.0 578
MS.gene005288.t1 AT1G68410 68.434 415 127 2 11 422 16 429 0.0 578
MS.gene005288.t1 AT1G68410 68.434 415 127 2 11 422 16 429 0.0 578
MS.gene005288.t1 AT1G47380 56.341 410 178 1 14 423 10 418 7.41e-170 483
MS.gene005288.t1 AT5G10740 30.921 304 168 13 6 298 8 280 5.34e-27 111
MS.gene005288.t1 AT5G10740 30.921 304 168 13 6 298 8 280 5.34e-27 111
MS.gene005288.t1 AT2G34740 33.054 239 136 8 65 298 116 335 7.68e-27 110
MS.gene005288.t1 AT1G67820 32.787 244 139 10 34 270 78 303 6.55e-26 108
MS.gene005288.t1 AT1G67820 32.787 244 139 10 34 270 114 339 8.76e-26 108
MS.gene005288.t1 AT5G24940 30.877 285 154 13 25 298 28 280 1.47e-25 108
MS.gene005288.t1 AT4G31750 29.180 305 163 13 25 306 28 302 2.59e-25 105
MS.gene005288.t1 AT4G31750 29.180 305 163 13 25 306 28 302 2.59e-25 105
MS.gene005288.t1 AT4G31750 30.108 279 158 11 25 295 28 277 3.05e-25 105
MS.gene005288.t1 AT1G07160 30.325 277 158 11 33 297 123 376 4.60e-25 106
MS.gene005288.t1 AT2G40180 28.622 283 182 8 21 297 117 385 2.36e-24 104
MS.gene005288.t1 AT1G43900 31.970 269 148 14 36 295 124 366 3.48e-24 103
MS.gene005288.t1 AT1G22280 30.901 233 143 7 68 295 65 284 3.66e-24 101
MS.gene005288.t1 AT1G34750 29.749 279 161 11 27 295 26 279 1.72e-23 99.8
MS.gene005288.t1 AT1G34750 29.749 279 161 11 27 295 26 279 1.72e-23 99.8
MS.gene005288.t1 AT1G34750 29.749 279 161 11 27 295 26 279 1.72e-23 99.8
MS.gene005288.t1 AT1G78200 31.128 257 147 10 46 295 2 235 1.95e-23 98.6
MS.gene005288.t1 AT1G78200 31.128 257 147 10 46 295 2 235 1.95e-23 98.6
MS.gene005288.t1 AT1G78200 30.357 280 161 11 27 295 24 280 2.03e-23 99.8
MS.gene005288.t1 AT1G78200 30.357 280 161 11 27 295 24 280 2.03e-23 99.8
MS.gene005288.t1 AT1G78200 30.357 280 161 11 27 295 24 280 2.03e-23 99.8
MS.gene005288.t1 AT2G30020 28.782 271 163 11 36 297 143 392 7.09e-23 100
MS.gene005288.t1 AT4G28400 29.258 229 146 6 68 295 45 258 8.20e-23 97.4
MS.gene005288.t1 AT5G53140 29.412 255 151 10 46 295 115 345 1.36e-22 99.8
MS.gene005288.t1 AT5G53140 29.412 255 151 10 46 295 115 345 1.36e-22 99.8
MS.gene005288.t1 AT4G28400 29.258 229 146 6 68 295 67 280 1.48e-22 97.4
MS.gene005288.t1 AT1G22280 30.901 233 137 8 68 295 65 278 3.86e-22 95.9
MS.gene005288.t1 AT2G20630 29.104 268 158 12 33 295 36 276 5.46e-22 95.5
MS.gene005288.t1 AT4G26080 27.737 274 149 7 61 299 165 424 9.41e-22 97.4
MS.gene005288.t1 AT2G20630 28.839 267 158 12 33 294 36 275 2.08e-21 94.0
MS.gene005288.t1 AT3G51470 28.475 295 169 11 36 314 32 300 5.92e-21 93.2
MS.gene005288.t1 AT3G51470 28.475 295 169 11 36 314 76 344 7.97e-21 93.6
MS.gene005288.t1 AT5G57050 28.464 267 145 9 65 297 117 371 3.36e-20 92.0
MS.gene005288.t1 AT5G57050 28.464 267 145 9 65 297 157 411 4.28e-20 92.4
MS.gene005288.t1 AT2G40860 29.286 280 157 9 36 299 396 650 1.15e-19 92.0
MS.gene005288.t1 AT2G40860 29.286 280 157 9 36 299 298 552 1.70e-19 91.3
MS.gene005288.t1 AT2G25620 30.451 266 136 10 67 308 127 367 1.85e-19 90.1
MS.gene005288.t1 AT2G25620 30.451 266 136 10 67 308 127 367 1.85e-19 90.1
MS.gene005288.t1 AT2G34740 29.665 209 127 5 65 270 112 303 2.65e-19 88.6
MS.gene005288.t1 AT2G34740 29.665 209 127 5 65 270 130 321 3.26e-19 88.6
MS.gene005288.t1 AT3G62260 29.771 262 148 12 67 307 26 272 3.26e-18 85.1
MS.gene005288.t1 AT2G40860 28.409 264 148 8 36 282 396 635 8.78e-18 86.3
MS.gene005288.t1 AT3G62260 29.771 262 148 12 67 307 115 361 1.13e-17 84.7
MS.gene005288.t1 AT1G48040 32.692 260 129 12 63 295 107 347 1.15e-17 84.7
MS.gene005288.t1 AT3G62260 29.771 262 148 12 67 307 116 362 1.21e-17 84.7
MS.gene005288.t1 AT3G15260 29.185 233 141 8 68 295 73 286 6.35e-17 81.3
MS.gene005288.t1 AT3G15260 29.185 233 141 8 68 295 73 286 6.35e-17 81.3
MS.gene005288.t1 AT1G34750 28.085 235 136 9 27 252 26 236 1.29e-16 79.3
MS.gene005288.t1 AT5G59220 28.287 251 150 10 31 265 107 343 3.77e-15 77.4
MS.gene005288.t1 AT4G28400 27.568 185 120 4 68 252 67 237 4.20e-15 75.1
MS.gene005288.t1 AT1G07430 29.148 223 121 8 62 265 151 355 3.89e-14 74.3
MS.gene005288.t1 AT4G27800 25.378 331 170 13 40 322 67 368 3.12e-13 71.2
MS.gene005288.t1 AT2G20050 28.053 303 156 16 36 297 116 397 5.17e-13 71.6
MS.gene005288.t1 AT2G20050 27.393 303 158 15 36 297 116 397 5.45e-13 71.6
MS.gene005288.t1 AT3G11410 25.446 224 126 7 62 260 131 338 1.17e-12 69.7
MS.gene005288.t1 AT3G17250 28.063 253 140 13 67 295 157 391 1.90e-12 68.9
MS.gene005288.t1 AT2G40860 29.114 237 127 8 36 255 396 608 2.47e-12 69.3
MS.gene005288.t1 AT1G16220 23.864 352 195 13 5 301 45 378 2.65e-12 68.9
MS.gene005288.t1 AT1G17550 27.434 226 120 8 69 265 238 448 8.89e-12 67.4
MS.gene005288.t1 AT1G17550 27.434 226 120 8 69 265 238 448 8.89e-12 67.4
MS.gene005288.t1 AT5G27930 33.544 158 88 7 105 251 150 301 9.16e-12 66.2
MS.gene005288.t1 AT4G27800 26.766 269 131 10 40 265 67 312 1.26e-11 65.9
MS.gene005288.t1 AT4G27800 26.766 269 131 10 40 265 67 312 1.43e-11 65.9
MS.gene005288.t1 AT1G79630 29.798 198 121 6 131 314 151 344 1.54e-11 66.2
MS.gene005288.t1 AT1G79630 29.798 198 121 6 131 314 151 344 1.54e-11 66.2
MS.gene005288.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.77e-11 65.9
MS.gene005288.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.77e-11 65.9
MS.gene005288.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.77e-11 65.9
MS.gene005288.t1 AT1G79630 29.500 200 123 6 131 316 111 306 1.77e-11 65.9
MS.gene005288.t1 AT1G79630 29.500 200 123 6 131 316 217 412 1.90e-11 66.2
MS.gene005288.t1 AT1G79630 29.500 200 123 6 131 316 221 416 2.94e-11 65.5
MS.gene005288.t1 AT5G36250 26.222 225 136 9 100 300 171 389 4.83e-11 64.7
MS.gene005288.t1 AT4G32950 30.114 176 110 5 131 297 138 309 5.01e-11 63.9
MS.gene005288.t1 AT2G29380 27.928 222 132 8 59 265 103 311 6.75e-11 63.9
MS.gene005288.t1 AT1G72770 24.727 275 149 9 69 297 239 501 7.02e-11 64.3
MS.gene005288.t1 AT1G72770 24.727 275 149 9 69 297 239 501 7.02e-11 64.3
MS.gene005288.t1 AT1G72770 24.727 275 149 9 69 297 239 501 7.02e-11 64.3

Find 118 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATAGCTTCTGATGGAATT+TGG 0.123861 1.1:-62013640 MS.gene005288:CDS
AGCACATTATGTTTCTTTCT+TGG 0.197447 1.1:+62013346 None:intergenic
GTTCCTTCCAATACAAATTC+TGG 0.255485 1.1:-62012734 MS.gene005288:CDS
TGTTTCTTTCTTGGAGTTGC+TGG 0.268275 1.1:+62013355 None:intergenic
GTGCTTAGTTCACTTCTCTT+TGG 0.288508 1.1:-62013328 MS.gene005288:CDS
TCACCTGCAGGGGAAACTTC+TGG 0.319705 1.1:-62014185 MS.gene005288:intron
TATAGCTTCTGATGGAATTT+GGG 0.324404 1.1:-62013639 MS.gene005288:CDS
GCTACGTTTGTGATTATTGA+TGG 0.331297 1.1:-62014155 MS.gene005288:CDS
CCGTTACAGTTGCATCTGTT+GGG 0.351128 1.1:-62014127 MS.gene005288:CDS
ACAGATTGCCATAGAGTTCC+TGG 0.368715 1.1:-62014805 MS.gene005288:CDS
ACTTGCTTAACATGTGGTAT+TGG 0.372029 1.1:+62013796 None:intergenic
TGCTGCCAAGCTGGTGGTTA+AGG 0.391611 1.1:-62013561 MS.gene005288:intron
AAGACGCCATGGAAGGAAAA+AGG 0.416517 1.1:-62012577 MS.gene005288:CDS
CAGATCCTTGACGGGCATAA+TGG 0.417208 1.1:-62014433 MS.gene005288:CDS
GGGCCTCTTCGCTGTTGGCC+TGG 0.420476 1.1:-62013874 MS.gene005288:CDS
AACCTGAACAGGAAGCTCTA+AGG 0.420809 1.1:-62013453 MS.gene005288:intron
GTAGGAAGACTCAACGTATT+CGG 0.426631 1.1:-62013990 MS.gene005288:CDS
GTTTCCTAGCTTTCAAATGC+TGG 0.427993 1.1:-62013674 MS.gene005288:intron
CTTGATTGGCAGATCCTTGA+CGG 0.435403 1.1:-62014442 MS.gene005288:intron
TGGAAGAAAATGTAGAAGAG+AGG 0.437691 1.1:-62014040 MS.gene005288:CDS
GTGAATACCAGAATTTGTAT+TGG 0.439513 1.1:+62012727 None:intergenic
CTTAAAATGCAGGCTAGGTA+AGG 0.443855 1.1:-62012759 MS.gene005288:intron
ATGGCTTCAAGCACTGCCTC+GGG 0.448779 1.1:-62014329 MS.gene005288:CDS
ACTAATAAGCTTTCTGCAGT+TGG 0.455037 1.1:-62013274 MS.gene005288:CDS
TCGTAGCTCACGGCCGATCA+AGG 0.456909 1.1:+62014909 None:intergenic
CCATACCGCAAGCTGTAAGC+AGG 0.459728 1.1:-62014357 MS.gene005288:CDS
GGATACTTTGTCTTCTGATA+CGG 0.461894 1.1:-62013618 MS.gene005288:CDS
AATGGCTTCAAGCACTGCCT+CGG 0.462446 1.1:-62014330 MS.gene005288:CDS
ATCGGCCGTGAGCTACGAAA+TGG 0.463670 1.1:-62014904 MS.gene005288:CDS
GTTCCGTTGGCAACCTTGAT+CGG 0.465033 1.1:-62014922 MS.gene005288:CDS
AAGAATCGCCAGGAACTCTA+TGG 0.471757 1.1:+62014797 None:intergenic
GCCTGTCCATACTTCACAAA+AGG 0.476504 1.1:+62014868 None:intergenic
TTTCTTGGAGTTGCTGGCAT+CGG 0.478380 1.1:+62013361 None:intergenic
GAAGTATGGACAGGCTGGTT+TGG 0.479502 1.1:-62014860 MS.gene005288:CDS
GTGGAGGAGTTATTTGAAGA+GGG 0.481037 1.1:-62013247 MS.gene005288:CDS
CTGGGTATCTAATATGCATC+GGG 0.481436 1.1:+62014100 None:intergenic
ACCGTTACAGTTGCATCTGT+TGG 0.483048 1.1:-62014128 MS.gene005288:CDS
TGCAGAACTTGCTGCCAAGC+TGG 0.486136 1.1:-62013570 MS.gene005288:CDS
TCTTCCTACTTCACCACCAC+TGG 0.489968 1.1:+62014004 None:intergenic
AATAATATCTACAACAAGGC+AGG 0.494608 1.1:+62013405 None:intergenic
GCTTTCTGCAGTTGGTATTG+TGG 0.496447 1.1:-62013266 MS.gene005288:CDS
TGACAGTTTGTGCAGAGGAA+TGG 0.499633 1.1:+62012608 None:intergenic
CCTTCCCATGGCTTAGATAC+CGG 0.499863 1.1:+62012632 None:intergenic
TGCCTAGCAGATCAACCATC+TGG 0.501426 1.1:-62012692 MS.gene005288:CDS
TTTGTGAAGTATGGACAGGC+TGG 0.503204 1.1:-62014865 MS.gene005288:CDS
AAAATGTAGAAGAGAGGGAG+CGG 0.505425 1.1:-62014034 MS.gene005288:CDS
CCTGCTTACAGCTTGCGGTA+TGG 0.506291 1.1:+62014357 None:intergenic
CGTTTGTGATTATTGATGGA+TGG 0.510062 1.1:-62014151 MS.gene005288:CDS
AGAGAGAAACAACACCTCCC+TGG 0.510635 1.1:+62014081 None:intergenic
TCCTCCCTGCTTACAGCTTG+CGG 0.511139 1.1:+62014352 None:intergenic
TTCTGCAGTTGGTATTGTGG+AGG 0.515246 1.1:-62013263 MS.gene005288:CDS
AGCTTGGCAGCAAGTTCTGC+AGG 0.516289 1.1:+62013572 None:intergenic
AGGTAGGGCCTCTTCGCTGT+TGG 0.519693 1.1:-62013879 MS.gene005288:CDS
ACAGCCAGTGGTGGTGAAGT+AGG 0.520024 1.1:-62014008 MS.gene005288:CDS
CGTTACAGTTGCATCTGTTG+GGG 0.531574 1.1:-62014126 MS.gene005288:CDS
TTGATTGGCAGATCCTTGAC+GGG 0.533037 1.1:-62014441 MS.gene005288:intron
GAAGCAACCACTTGTTCCGT+TGG 0.533409 1.1:-62014935 MS.gene005288:CDS
TGAGTAAGACTGAATTATCA+AGG 0.534598 1.1:-62014960 MS.gene005288:CDS
ATAAAATGATCGGTGTTCAC+TGG 0.535304 1.1:+62012659 None:intergenic
CCTCTTCGCTGTTGGCCTGG+TGG 0.536837 1.1:-62013871 MS.gene005288:CDS
AAATGTAGAAGAGAGGGAGC+GGG 0.539423 1.1:-62014033 MS.gene005288:CDS
TGTGGAGGAGTTATTTGAAG+AGG 0.540145 1.1:-62013248 MS.gene005288:CDS
AATGACGTTGAAGAATCGCC+AGG 0.544088 1.1:+62014787 None:intergenic
CCTGGGTATCTAATATGCAT+CGG 0.544206 1.1:+62014099 None:intergenic
ATACCAGAATTTGTATTGGA+AGG 0.544653 1.1:+62012731 None:intergenic
TCACTCCGGTATCTAAGCCA+TGG 0.550001 1.1:-62012637 MS.gene005288:CDS
AGACTAATTATAGCTTCTGA+TGG 0.551958 1.1:-62013647 MS.gene005288:CDS
TCTAAGGTCAAGAGGGCTGA+AGG 0.552829 1.1:-62013437 MS.gene005288:CDS
TGTCACCAATCGATCTAGAA+AGG 0.554127 1.1:+62013842 None:intergenic
GAGAGAAACAACACCTCCCT+GGG 0.554466 1.1:+62014082 None:intergenic
AGGGAGCGGGTTACAGCCAG+TGG 0.559334 1.1:-62014020 MS.gene005288:CDS
GGAAGAAAATGTAGAAGAGA+GGG 0.560448 1.1:-62014039 MS.gene005288:CDS
CACTCCGGTATCTAAGCCAT+GGG 0.564768 1.1:-62012636 MS.gene005288:CDS
CTAGAAAGGCACAATCCACC+AGG 0.566834 1.1:+62013856 None:intergenic
CCGATGCATATTAGATACCC+AGG 0.567386 1.1:-62014099 MS.gene005288:CDS
AAGCTGTAAGCAGGGAGGAA+TGG 0.567687 1.1:-62014348 MS.gene005288:CDS
TCTTCTGACAGTTTGTGCAG+AGG 0.570739 1.1:+62012603 None:intergenic
TTGTGCCTTTCTAGATCGAT+TGG 0.574242 1.1:-62013847 MS.gene005288:CDS
CACCAGATGGTTGATCTGCT+AGG 0.577655 1.1:+62012690 None:intergenic
AGGTACACCACGACATGACT+TGG 0.578313 1.1:+62013592 None:intergenic
CAGGAAGCTCTAAGGTCAAG+AGG 0.580501 1.1:-62013445 MS.gene005288:CDS
GTTGCTGGCATCGGCAACAC+AGG 0.580752 1.1:+62013370 None:intergenic
ACCTTCACTTGCTTAACATG+TGG 0.582513 1.1:+62013790 None:intergenic
CAGAGGAATGGACCTTCCCA+TGG 0.585428 1.1:+62012620 None:intergenic
TCTCAAAACTCGACAAACAA+AGG 0.587947 1.1:-62013298 MS.gene005288:CDS
CTTGACAGTTGATCACAGAC+TGG 0.593422 1.1:-62014060 MS.gene005288:CDS
AAGAAGAAAGACGCCATGGA+AGG 0.594109 1.1:-62012584 MS.gene005288:CDS
ATCGATTGGTGACACCGATG+TGG 0.601496 1.1:-62013833 MS.gene005288:CDS
GCAGATCAACCATCTGGTGA+TGG 0.602774 1.1:-62012686 MS.gene005288:CDS
TACCGGAGTGATAAAATGAT+CGG 0.613081 1.1:+62012649 None:intergenic
CATCACCTTAACCACCAGCT+TGG 0.613564 1.1:+62013556 None:intergenic
CCACCAGGCCAACAGCGAAG+AGG 0.616089 1.1:+62013871 None:intergenic
TCGATTGGTGACACCGATGT+GGG 0.617709 1.1:-62013832 MS.gene005288:CDS
AAGGTTGCCAACGGAACAAG+TGG 0.618923 1.1:+62014928 None:intergenic
ATATACCATTATGCCCGTCA+AGG 0.625718 1.1:+62014428 None:intergenic
GAGCGGGTTACAGCCAGTGG+TGG 0.626341 1.1:-62014017 MS.gene005288:CDS
AGGAAGCTCTAAGGTCAAGA+GGG 0.627250 1.1:-62013444 MS.gene005288:CDS
ACCACATGTTAAGCAAGTGA+AGG 0.627901 1.1:-62013791 MS.gene005288:intron
TCAGAAGAAGAAAGACGCCA+TGG 0.630309 1.1:-62012588 MS.gene005288:CDS
CCCAACAGATGCAACTGTAA+CGG 0.630410 1.1:+62014127 None:intergenic
CGGCCGATCAAGGTTGCCAA+CGG 0.631386 1.1:+62014919 None:intergenic
TCCTAGCTTTCAAATGCTGG+CGG 0.631854 1.1:-62013671 MS.gene005288:intron
CCGGTATCTAAGCCATGGGA+AGG 0.632107 1.1:-62012632 MS.gene005288:CDS
GGCAACACAGGATAGTCTGA+AGG 0.635849 1.1:+62013382 None:intergenic
AAAGCGACAACTAGAGCCCG+AGG 0.640273 1.1:+62014313 None:intergenic
CAACGTATTCGGAGGCAATG+AGG 0.642352 1.1:-62013979 MS.gene005288:intron
CGATGCATATTAGATACCCA+GGG 0.643134 1.1:-62014098 MS.gene005288:CDS
ACTGGTAAACCATCACCAGA+TGG 0.656343 1.1:+62012677 None:intergenic
CATACCGCAAGCTGTAAGCA+GGG 0.656614 1.1:-62014356 MS.gene005288:CDS
GGAAGACTCAACGTATTCGG+AGG 0.678380 1.1:-62013987 MS.gene005288:CDS
AACGATATACTCTCCCACAT+CGG 0.681964 1.1:+62013819 None:intergenic
AGAACTTGCTGCCAAGCTGG+TGG 0.683075 1.1:-62013567 MS.gene005288:CDS
ACGGCTGCCAAGTCATGTCG+TGG 0.691102 1.1:-62013599 MS.gene005288:CDS
AAGGAATAATATCTACAACA+AGG 0.708500 1.1:+62013401 None:intergenic
ACCGCAAGCTGTAAGCAGGG+AGG 0.738061 1.1:-62014353 MS.gene005288:CDS
GTTCTGCAATGCTTACAGAG+AGG 0.751165 1.1:-62013225 MS.gene005288:intron
TGCATATTAGATACCCAGGG+AGG 0.753250 1.1:-62014095 MS.gene005288:CDS
CTGCTAGGCAAACTGCACAG+CGG 0.759343 1.1:+62012705 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAATTTTTACTTTTTACAT+CGG + chr1.1:62014675-62014694 None:intergenic 15.0%
!!! TTGAAAATGCATTTTATAAA+TGG - chr1.1:62014513-62014532 MS.gene005288:intron 15.0%
!! AAGAACTACTAAACTTTAAA+AGG + chr1.1:62014375-62014394 None:intergenic 20.0%
!! ATAAGATCTTATGAATGAAT+TGG - chr1.1:62012905-62012924 MS.gene005288:intron 20.0%
!! TAAGGAAGAAATTATATGAA+AGG + chr1.1:62013604-62013623 None:intergenic 20.0%
!!! CATTTGATTATGAATCTTTT+TGG + chr1.1:62014640-62014659 None:intergenic 20.0%
!!! TTTTGGTTCCTTAATATTTT+AGG - chr1.1:62013633-62013652 MS.gene005288:CDS 20.0%
!!! TTTTTGTTTTCTTAAAATGC+AGG - chr1.1:62014763-62014782 MS.gene005288:intron 20.0%
! AAGGAATAATATCTACAACA+AGG + chr1.1:62014134-62014153 None:intergenic 25.0%
! ATCAATAAGGAATTCTTGAT+TGG - chr1.1:62013076-62013095 MS.gene005288:intron 25.0%
! ATTGATATCATAACCATTGT+GGG + chr1.1:62013062-62013081 None:intergenic 25.0%
! CAATGGTTATGATATCAATA+AGG - chr1.1:62013063-62013082 MS.gene005288:intron 25.0%
! GATTGGAACAAAAATGTTTA+GGG - chr1.1:62014415-62014434 MS.gene005288:CDS 25.0%
! TATTGATATCATAACCATTG+TGG + chr1.1:62013063-62013082 None:intergenic 25.0%
! TGATTGGAACAAAAATGTTT+AGG - chr1.1:62014414-62014433 MS.gene005288:CDS 25.0%
!! AAAATTTAATTTCACCTGCA+GGG - chr1.1:62013336-62013355 MS.gene005288:CDS 25.0%
!! AGTTTTCTTTGTATCCTTAT+TGG - chr1.1:62013284-62013303 MS.gene005288:CDS 25.0%
!! TAAAATTTAATTTCACCTGC+AGG - chr1.1:62013335-62013354 MS.gene005288:CDS 25.0%
!!! GTTCCTTAATATTTTAGGTA+GGG - chr1.1:62013638-62013657 MS.gene005288:CDS 25.0%
AAAGGGAATGTATCTTTCTT+AGG - chr1.1:62012952-62012971 MS.gene005288:intron 30.0%
AATAATATCTACAACAAGGC+AGG + chr1.1:62014130-62014149 None:intergenic 30.0%
AGACTAATTATAGCTTCTGA+TGG - chr1.1:62013885-62013904 MS.gene005288:intron 30.0%
AGCACATTATGTTTCTTTCT+TGG + chr1.1:62014189-62014208 None:intergenic 30.0%
AGTAAACACCTTCACATAAA+AGG + chr1.1:62013804-62013823 None:intergenic 30.0%
ATACCAGAATTTGTATTGGA+AGG + chr1.1:62014804-62014823 None:intergenic 30.0%
GAACCAAAACAAGTTAGATA+AGG + chr1.1:62013622-62013641 None:intergenic 30.0%
GAATTCAAGTCTCATTATGT+TGG - chr1.1:62014030-62014049 MS.gene005288:CDS 30.0%
GACATGGAATTTCAGAAAAA+AGG - chr1.1:62013252-62013271 MS.gene005288:CDS 30.0%
GTAAACACCTTCACATAAAA+GGG + chr1.1:62013803-62013822 None:intergenic 30.0%
GTGAATACCAGAATTTGTAT+TGG + chr1.1:62014808-62014827 None:intergenic 30.0%
TAAGAAAGATACATTCCCTT+TGG + chr1.1:62012953-62012972 None:intergenic 30.0%
TATAGCTTCTGATGGAATTT+GGG - chr1.1:62013893-62013912 MS.gene005288:intron 30.0%
TGAGTAAGACTGAATTATCA+AGG - chr1.1:62012572-62012591 MS.gene005288:CDS 30.0%
TTAGTGAAATGTTTGATGAG+AGG - chr1.1:62012847-62012866 MS.gene005288:intron 30.0%
TTATAGCTTCTGATGGAATT+TGG - chr1.1:62013892-62013911 MS.gene005288:intron 30.0%
! AAATTTAATTTCACCTGCAG+GGG - chr1.1:62013337-62013356 MS.gene005288:CDS 30.0%
!! AACTAGAGAAAGTGCATTTT+CGG + chr1.1:62014592-62014611 None:intergenic 30.0%
!! GGTTCCTTAATATTTTAGGT+AGG - chr1.1:62013637-62013656 MS.gene005288:CDS 30.0%
!! TTTGATGAGAGGTATTTGAT+TGG - chr1.1:62012858-62012877 MS.gene005288:intron 30.0%
!!! ATGTCCTTATTTTCCCATTT+TGG - chr1.1:62014716-62014735 MS.gene005288:intron 30.0%
!!! CTTCCTTATCTAACTTGTTT+TGG - chr1.1:62013616-62013635 MS.gene005288:CDS 30.0%
!!! TCTATTGTTTTAACCTGAAC+AGG - chr1.1:62014068-62014087 MS.gene005288:CDS 30.0%
!!! TGTCCTTATTTTCCCATTTT+GGG - chr1.1:62014717-62014736 MS.gene005288:intron 30.0%
AAAGCTAGGAAACAAATCAG+GGG + chr1.1:62013851-62013870 None:intergenic 35.0%
ACACATGAATACACCCAAAA+TGG + chr1.1:62014733-62014752 None:intergenic 35.0%
ACACCCAAAATGGGAAAATA+AGG + chr1.1:62014723-62014742 None:intergenic 35.0%
ACTAATAAGCTTTCTGCAGT+TGG - chr1.1:62014258-62014277 MS.gene005288:intron 35.0%
ACTTGCTTAACATGTGGTAT+TGG + chr1.1:62013739-62013758 None:intergenic 35.0%
AGGCCCTACCTAAAATATTA+AGG + chr1.1:62013644-62013663 None:intergenic 35.0%
CACATGAATACACCCAAAAT+GGG + chr1.1:62014732-62014751 None:intergenic 35.0%
CGTTTGTGATTATTGATGGA+TGG - chr1.1:62013381-62013400 MS.gene005288:CDS 35.0%
GAAAGCTAGGAAACAAATCA+GGG + chr1.1:62013852-62013871 None:intergenic 35.0%
GCTACGTTTGTGATTATTGA+TGG - chr1.1:62013377-62013396 MS.gene005288:CDS 35.0%
GGAAGAAAATGTAGAAGAGA+GGG - chr1.1:62013493-62013512 MS.gene005288:intron 35.0%
GGATACTTTGTCTTCTGATA+CGG - chr1.1:62013914-62013933 MS.gene005288:intron 35.0%
GTTCCTTCCAATACAAATTC+TGG - chr1.1:62014798-62014817 MS.gene005288:CDS 35.0%
TACCGGAGTGATAAAATGAT+CGG + chr1.1:62014886-62014905 None:intergenic 35.0%
TCTCAAAACTCGACAAACAA+AGG - chr1.1:62014234-62014253 MS.gene005288:intron 35.0%
TGAAAGCTAGGAAACAAATC+AGG + chr1.1:62013853-62013872 None:intergenic 35.0%
TGAGCTACGAAATGGAAAAA+CGG - chr1.1:62012636-62012655 MS.gene005288:CDS 35.0%
TGGAAGAAAATGTAGAAGAG+AGG - chr1.1:62013492-62013511 MS.gene005288:intron 35.0%
! ACATTTTCTCAGTGATCAAG+TGG - chr1.1:62013022-62013041 MS.gene005288:intron 35.0%
! ATAAAATGATCGGTGTTCAC+TGG + chr1.1:62014876-62014895 None:intergenic 35.0%
! GTTAAGGTGATGGTTATTTG+TGG - chr1.1:62013987-62014006 MS.gene005288:CDS 35.0%
! GTTTTCTTAAAATGCAGGCT+AGG - chr1.1:62014768-62014787 MS.gene005288:intron 35.0%
! TGTTTAGGGTCTGTTTACTT+CGG - chr1.1:62014429-62014448 MS.gene005288:CDS 35.0%
! TTCCAATCACTTGTTGATGA+TGG + chr1.1:62014403-62014422 None:intergenic 35.0%
! TTTTTCCATTTCGTAGCTCA+CGG + chr1.1:62012636-62012655 None:intergenic 35.0%
!! AACGTCATTTTCTGTTTTCG+CGG - chr1.1:62012759-62012778 MS.gene005288:intron 35.0%
!! TTCTAAAGTTCAATGCTCAC+TGG - chr1.1:62013823-62013842 MS.gene005288:CDS 35.0%
!!! GGCAGTGTTCTTATTTTTTG+AGG - chr1.1:62014008-62014027 MS.gene005288:CDS 35.0%
!!! GTGAGTTGGTTTCATTTTCA+TGG - chr1.1:62013763-62013782 MS.gene005288:intron 35.0%
AAAATGTAGAAGAGAGGGAG+CGG - chr1.1:62013498-62013517 MS.gene005288:intron 40.0%
AACGATATACTCTCCCACAT+CGG + chr1.1:62013716-62013735 None:intergenic 40.0%
ACCACATGTTAAGCAAGTGA+AGG - chr1.1:62013741-62013760 MS.gene005288:intron 40.0%
ACCTTCACTTGCTTAACATG+TGG + chr1.1:62013745-62013764 None:intergenic 40.0%
ATATACCATTATGCCCGTCA+AGG + chr1.1:62013107-62013126 None:intergenic 40.0%
CCTGGGTATCTAATATGCAT+CGG + chr1.1:62013436-62013455 None:intergenic 40.0%
CGATGCATATTAGATACCCA+GGG - chr1.1:62013434-62013453 MS.gene005288:CDS 40.0%
CTGGGTATCTAATATGCATC+GGG + chr1.1:62013435-62013454 None:intergenic 40.0%
CTGTCATTGAGAGAACATGA+AGG + chr1.1:62014617-62014636 None:intergenic 40.0%
CTTAAAATGCAGGCTAGGTA+AGG - chr1.1:62014773-62014792 MS.gene005288:intron 40.0%
GAACAAGTACAGCTCCAATA+AGG + chr1.1:62013301-62013320 None:intergenic 40.0%
GCGTCAATTTATTCCCACAA+TGG - chr1.1:62013046-62013065 MS.gene005288:intron 40.0%
GTAGGAAGACTCAACGTATT+CGG - chr1.1:62013542-62013561 MS.gene005288:intron 40.0%
GTGCTTAGTTCACTTCTCTT+TGG - chr1.1:62014204-62014223 MS.gene005288:intron 40.0%
GTGGAGGAGTTATTTGAAGA+GGG - chr1.1:62014285-62014304 MS.gene005288:CDS 40.0%
TGCCATCATCAACAAGTGAT+TGG - chr1.1:62014398-62014417 MS.gene005288:CDS 40.0%
TGTCACCAATCGATCTAGAA+AGG + chr1.1:62013693-62013712 None:intergenic 40.0%
TGTGGAGGAGTTATTTGAAG+AGG - chr1.1:62014284-62014303 MS.gene005288:CDS 40.0%
TGTTTCTTTCTTGGAGTTGC+TGG + chr1.1:62014180-62014199 None:intergenic 40.0%
TTAAGCAAGTGAAGGTGAGT+TGG - chr1.1:62013749-62013768 MS.gene005288:intron 40.0%
TTCCTTCGCAAAAATAGCAG+CGG + chr1.1:62013130-62013149 None:intergenic 40.0%
TTGTGCCTTTCTAGATCGAT+TGG - chr1.1:62013685-62013704 MS.gene005288:intron 40.0%
! CACCGATCATTTTATCACTC+CGG - chr1.1:62014881-62014900 MS.gene005288:CDS 40.0%
! CGCTTTTGTGAAAACTGACA+TGG - chr1.1:62013236-62013255 MS.gene005288:CDS 40.0%
! CTAGTGACCCTTTTATGTGA+AGG - chr1.1:62013793-62013812 MS.gene005288:CDS 40.0%
! GAGAAGCCTTTTGTGAAGTA+TGG - chr1.1:62012658-62012677 MS.gene005288:CDS 40.0%
! GTTTAGGGTCTGTTTACTTC+GGG - chr1.1:62014430-62014449 MS.gene005288:CDS 40.0%
! GTTTCCTAGCTTTCAAATGC+TGG - chr1.1:62013858-62013877 MS.gene005288:CDS 40.0%
! TCATTTTCTGTTTTCGCGGT+AGG - chr1.1:62012763-62012782 MS.gene005288:intron 40.0%
!!! TTACTTTTTACATCGGCAGC+TGG + chr1.1:62014668-62014687 None:intergenic 40.0%
AAATGTAGAAGAGAGGGAGC+GGG - chr1.1:62013499-62013518 MS.gene005288:intron 45.0%
AACCTGAACAGGAAGCTCTA+AGG - chr1.1:62014079-62014098 MS.gene005288:CDS 45.0%
AAGAAGAAAGACGCCATGGA+AGG - chr1.1:62014948-62014967 MS.gene005288:CDS 45.0%
AAGAATCGCCAGGAACTCTA+TGG + chr1.1:62012738-62012757 None:intergenic 45.0%
AAGACGCCATGGAAGGAAAA+AGG - chr1.1:62014955-62014974 MS.gene005288:CDS 45.0%
AATGACGTTGAAGAATCGCC+AGG + chr1.1:62012748-62012767 None:intergenic 45.0%
ACAGATTGCCATAGAGTTCC+TGG - chr1.1:62012727-62012746 MS.gene005288:CDS 45.0%
ACCGTTACAGTTGCATCTGT+TGG - chr1.1:62013404-62013423 MS.gene005288:CDS 45.0%
ACTGGTAAACCATCACCAGA+TGG + chr1.1:62014858-62014877 None:intergenic 45.0%
CCCAACAGATGCAACTGTAA+CGG + chr1.1:62013408-62013427 None:intergenic 45.0%
CCGATGCATATTAGATACCC+AGG - chr1.1:62013433-62013452 MS.gene005288:CDS 45.0%
CCGTTACAGTTGCATCTGTT+GGG - chr1.1:62013405-62013424 MS.gene005288:CDS 45.0%
CGTTACAGTTGCATCTGTTG+GGG - chr1.1:62013406-62013425 MS.gene005288:CDS 45.0%
CTTGACAGTTGATCACAGAC+TGG - chr1.1:62013472-62013491 MS.gene005288:intron 45.0%
CTTGATTGGCAGATCCTTGA+CGG - chr1.1:62013090-62013109 MS.gene005288:intron 45.0%
GCCTGTCCATACTTCACAAA+AGG + chr1.1:62012667-62012686 None:intergenic 45.0%
GTTCTGCAATGCTTACAGAG+AGG - chr1.1:62014307-62014326 MS.gene005288:CDS 45.0%
TCAGAAGAAGAAAGACGCCA+TGG - chr1.1:62014944-62014963 MS.gene005288:CDS 45.0%
TCTTCTGACAGTTTGTGCAG+AGG + chr1.1:62014932-62014951 None:intergenic 45.0%
TGACAGTTTGTGCAGAGGAA+TGG + chr1.1:62014927-62014946 None:intergenic 45.0%
TGCATATTAGATACCCAGGG+AGG - chr1.1:62013437-62013456 MS.gene005288:CDS 45.0%
TTCTGCTTCGAGAGACCAAA+GGG - chr1.1:62012935-62012954 MS.gene005288:intron 45.0%
TTGATTGGCAGATCCTTGAC+GGG - chr1.1:62013091-62013110 MS.gene005288:intron 45.0%
TTTCTTGGAGTTGCTGGCAT+CGG + chr1.1:62014174-62014193 None:intergenic 45.0%
TTTGTGAAGTATGGACAGGC+TGG - chr1.1:62012667-62012686 MS.gene005288:CDS 45.0%
! GCCTTTTGTGAAGTATGGAC+AGG - chr1.1:62012663-62012682 MS.gene005288:CDS 45.0%
! GCTTTCTGCAGTTGGTATTG+TGG - chr1.1:62014266-62014285 MS.gene005288:intron 45.0%
! TCAGGACCTTTTTCCTTCCA+TGG + chr1.1:62014964-62014983 None:intergenic 45.0%
! TCCTAGCTTTCAAATGCTGG+CGG - chr1.1:62013861-62013880 MS.gene005288:CDS 45.0%
! TTCTGCAGTTGGTATTGTGG+AGG - chr1.1:62014269-62014288 MS.gene005288:intron 45.0%
!! AGGAAGCTCTAAGGTCAAGA+GGG - chr1.1:62014088-62014107 MS.gene005288:CDS 45.0%
!! CAGGCTGGTTTGGCAAAAAA+AGG - chr1.1:62012682-62012701 MS.gene005288:CDS 45.0%
!!! ATCCGCTGCTATTTTTGCGA+AGG - chr1.1:62013125-62013144 MS.gene005288:intron 45.0%
AAGCTGTAAGCAGGGAGGAA+TGG - chr1.1:62013184-62013203 MS.gene005288:intron 50.0%
AAGGTTGCCAACGGAACAAG+TGG + chr1.1:62012607-62012626 None:intergenic 50.0%
AGAGAGAAACAACACCTCCC+TGG + chr1.1:62013454-62013473 None:intergenic 50.0%
AGGTACACCACGACATGACT+TGG + chr1.1:62013943-62013962 None:intergenic 50.0%
CAACGTATTCGGAGGCAATG+AGG - chr1.1:62013553-62013572 MS.gene005288:intron 50.0%
CAAGCTGGTGGTTAAGGTGA+TGG - chr1.1:62013977-62013996 MS.gene005288:intron 50.0%
CACCAGATGGTTGATCTGCT+AGG + chr1.1:62014845-62014864 None:intergenic 50.0%
CACTCCGGTATCTAAGCCAT+GGG - chr1.1:62014896-62014915 MS.gene005288:CDS 50.0%
CATACCGCAAGCTGTAAGCA+GGG - chr1.1:62013176-62013195 MS.gene005288:intron 50.0%
CATCACCTTAACCACCAGCT+TGG + chr1.1:62013979-62013998 None:intergenic 50.0%
CCTTCCCATGGCTTAGATAC+CGG + chr1.1:62014903-62014922 None:intergenic 50.0%
GAAGCAACCACTTGTTCCGT+TGG - chr1.1:62012597-62012616 MS.gene005288:CDS 50.0%
GACCTTAGAGCTTCCTGTTC+AGG + chr1.1:62014084-62014103 None:intergenic 50.0%
GAGAGAAACAACACCTCCCT+GGG + chr1.1:62013453-62013472 None:intergenic 50.0%
GCAGATCAACCATCTGGTGA+TGG - chr1.1:62014846-62014865 MS.gene005288:CDS 50.0%
GGAAGACTCAACGTATTCGG+AGG - chr1.1:62013545-62013564 MS.gene005288:intron 50.0%
GGCAACACAGGATAGTCTGA+AGG + chr1.1:62014153-62014172 None:intergenic 50.0%
GTTCCGTTGGCAACCTTGAT+CGG - chr1.1:62012610-62012629 MS.gene005288:CDS 50.0%
GTTCTGCTTCGAGAGACCAA+AGG - chr1.1:62012934-62012953 MS.gene005288:intron 50.0%
TCACTCCGGTATCTAAGCCA+TGG - chr1.1:62014895-62014914 MS.gene005288:CDS 50.0%
TCCGCCAGCATTTGAAAGCT+AGG + chr1.1:62013865-62013884 None:intergenic 50.0%
TCTTCCTACTTCACCACCAC+TGG + chr1.1:62013531-62013550 None:intergenic 50.0%
TGCCTAGCAGATCAACCATC+TGG - chr1.1:62014840-62014859 MS.gene005288:CDS 50.0%
! AATGGCTTCAAGCACTGCCT+CGG - chr1.1:62013202-62013221 MS.gene005288:intron 50.0%
! ATCGATTGGTGACACCGATG+TGG - chr1.1:62013699-62013718 MS.gene005288:intron 50.0%
! CAGATCCTTGACGGGCATAA+TGG - chr1.1:62013099-62013118 MS.gene005288:intron 50.0%
! CTAGAAAGGCACAATCCACC+AGG + chr1.1:62013679-62013698 None:intergenic 50.0%
! GAAGTATGGACAGGCTGGTT+TGG - chr1.1:62012672-62012691 MS.gene005288:CDS 50.0%
! TCGATTGGTGACACCGATGT+GGG - chr1.1:62013700-62013719 MS.gene005288:intron 50.0%
! TCTAAGGTCAAGAGGGCTGA+AGG - chr1.1:62014095-62014114 MS.gene005288:CDS 50.0%
!! CAGGAAGCTCTAAGGTCAAG+AGG - chr1.1:62014087-62014106 MS.gene005288:CDS 50.0%
AAAGCGACAACTAGAGCCCG+AGG + chr1.1:62013222-62013241 None:intergenic 55.0%
AGCTTGGCAGCAAGTTCTGC+AGG + chr1.1:62013963-62013982 None:intergenic 55.0%
ATCGGCCGTGAGCTACGAAA+TGG - chr1.1:62012628-62012647 MS.gene005288:CDS 55.0%
CAGAGGAATGGACCTTCCCA+TGG + chr1.1:62014915-62014934 None:intergenic 55.0%
CCATACCGCAAGCTGTAAGC+AGG - chr1.1:62013175-62013194 MS.gene005288:intron 55.0%
CCGGTATCTAAGCCATGGGA+AGG - chr1.1:62014900-62014919 MS.gene005288:CDS 55.0%
CCTGCTTACAGCTTGCGGTA+TGG + chr1.1:62013178-62013197 None:intergenic 55.0%
CTGCTAGGCAAACTGCACAG+CGG + chr1.1:62014830-62014849 None:intergenic 55.0%
GTTCCAGAAGTTTCCCCTGC+AGG + chr1.1:62013353-62013372 None:intergenic 55.0%
TCACCTGCAGGGGAAACTTC+TGG - chr1.1:62013347-62013366 MS.gene005288:CDS 55.0%
TCCTCCCTGCTTACAGCTTG+CGG + chr1.1:62013183-62013202 None:intergenic 55.0%
TGCTGCCAAGCTGGTGGTTA+AGG - chr1.1:62013971-62013990 MS.gene005288:intron 55.0%
! ACAGCCAGTGGTGGTGAAGT+AGG - chr1.1:62013524-62013543 MS.gene005288:intron 55.0%
! ATGGCTTCAAGCACTGCCTC+GGG - chr1.1:62013203-62013222 MS.gene005288:intron 55.0%
!! AGAACTTGCTGCCAAGCTGG+TGG - chr1.1:62013965-62013984 MS.gene005288:intron 55.0%
!! TGCAGAACTTGCTGCCAAGC+TGG - chr1.1:62013962-62013981 MS.gene005288:intron 55.0%
ACCGCAAGCTGTAAGCAGGG+AGG - chr1.1:62013179-62013198 MS.gene005288:intron 60.0%
ACGGCTGCCAAGTCATGTCG+TGG - chr1.1:62013933-62013952 MS.gene005288:intron 60.0%
AGGTAGGGCCTCTTCGCTGT+TGG - chr1.1:62013653-62013672 MS.gene005288:CDS 60.0%
CGGCCGATCAAGGTTGCCAA+CGG + chr1.1:62012616-62012635 None:intergenic 60.0%
TCGTAGCTCACGGCCGATCA+AGG + chr1.1:62012626-62012645 None:intergenic 60.0%
!! GTTGCTGGCATCGGCAACAC+AGG + chr1.1:62014165-62014184 None:intergenic 60.0%
CCACCAGGCCAACAGCGAAG+AGG + chr1.1:62013664-62013683 None:intergenic 65.0%
! CCTCTTCGCTGTTGGCCTGG+TGG - chr1.1:62013661-62013680 MS.gene005288:CDS 65.0%
!! AGGGAGCGGGTTACAGCCAG+TGG - chr1.1:62013512-62013531 MS.gene005288:intron 65.0%
!! GAGCGGGTTACAGCCAGTGG+TGG - chr1.1:62013515-62013534 MS.gene005288:intron 65.0%
GGGCCTCTTCGCTGTTGGCC+TGG - chr1.1:62013658-62013677 MS.gene005288:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 62012571 62014983 62012571 ID=MS.gene005288
chr1.1 mRNA 62012571 62014983 62012571 ID=MS.gene005288.t1;Parent=MS.gene005288
chr1.1 exon 62014774 62014983 62014774 ID=MS.gene005288.t1.exon1;Parent=MS.gene005288.t1
chr1.1 CDS 62014774 62014983 62014774 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
chr1.1 exon 62014281 62014452 62014281 ID=MS.gene005288.t1.exon2;Parent=MS.gene005288.t1
chr1.1 CDS 62014281 62014452 62014281 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
chr1.1 exon 62013980 62014197 62013980 ID=MS.gene005288.t1.exon3;Parent=MS.gene005288.t1
chr1.1 CDS 62013980 62014197 62013980 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
chr1.1 exon 62013792 62013899 62013792 ID=MS.gene005288.t1.exon4;Parent=MS.gene005288.t1
chr1.1 CDS 62013792 62013899 62013792 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
chr1.1 exon 62013562 62013687 62013562 ID=MS.gene005288.t1.exon5;Parent=MS.gene005288.t1
chr1.1 CDS 62013562 62013687 62013562 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
chr1.1 exon 62013226 62013464 62013226 ID=MS.gene005288.t1.exon6;Parent=MS.gene005288.t1
chr1.1 CDS 62013226 62013464 62013226 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
chr1.1 exon 62012571 62012769 62012571 ID=MS.gene005288.t1.exon7;Parent=MS.gene005288.t1
chr1.1 CDS 62012571 62012769 62012571 ID=cds.MS.gene005288.t1;Parent=MS.gene005288.t1
Gene Sequence

>MS.gene005288

ATGAGTAAGACTGAATTATCAAGGATGAAGCAACCACTTGTTCCGTTGGCAACCTTGATCGGCCGTGAGCTACGAAATGGAAAAACGGAGAAGCCTTTTGTGAAGTATGGACAGGCTGGTTTGGCAAAAAAAGGAGAAGATTACTTTCTAATCAAGACAGATTGCCATAGAGTTCCTGGCGATTCTTCAACGTCATTTTCTGTTTTCGCGGTAGGTATCATACACGTTCTTTGTTTACATGTGTTTTTAATTAACTTGATTGTCATTCTTTTGTTTTTAGTGAAATGTTTGATGAGAGGTATTTGATTGGTAAGAAATGAAAATATTGCTTAAGATAAGATCTTATGAATGAATTGGCAATTTGTTCTGCTTCGAGAGACCAAAGGGAATGTATCTTTCTTAGGTTTAGTACATAAATGAGAGTTGAAGTGTGTGATTTCTATCTTATCTTACATTTTCTCAGTGATCAAGTGGAGCGTCAATTTATTCCCACAATGGTTATGATATCAATAAGGAATTCTTGATTGGCAGATCCTTGACGGGCATAATGGTATATCCGCTGCTATTTTTGCGAAGGAAAACATAATAAACAATGTCATGAGTGCCATACCGCAAGCTGTAAGCAGGGAGGAATGGCTTCAAGCACTGCCTCGGGCTCTAGTTGTCGCTTTTGTGAAAACTGACATGGAATTTCAGAAAAAAGGTACACACACAGTTTTCTTTGTATCCTTATTGGAGCTGTACTTGTTCATGTACACTCATTCTAAAATTTAATTTCACCTGCAGGGGAAACTTCTGGAACGACAGCTACGTTTGTGATTATTGATGGATGGACCGTTACAGTTGCATCTGTTGGGGATTCCCGATGCATATTAGATACCCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGACTGGAAGAAAATGTAGAAGAGAGGGAGCGGGTTACAGCCAGTGGTGGTGAAGTAGGAAGACTCAACGTATTCGGAGGCAATGAGGTATGATGTGTAATCTTCTTCATATTCCTTTCATATAATTTCTTCCTTATCTAACTTGTTTTGGTTCCTTAATATTTTAGGTAGGGCCTCTTCGCTGTTGGCCTGGTGGATTGTGCCTTTCTAGATCGATTGGTGACACCGATGTGGGAGAGTATATCGTTCCAATACCACATGTTAAGCAAGTGAAGGTGAGTTGGTTTCATTTTCATGGTTTTAGTCTAGTGACCCTTTTATGTGAAGGTGTTTACTTCTAAAGTTCAATGCTCACTGGCTCCCCTGATTTGTTTCCTAGCTTTCAAATGCTGGCGGAAGACTAATTATAGCTTCTGATGGAATTTGGGATACTTTGTCTTCTGATACGGCTGCCAAGTCATGTCGTGGTGTACCTGCAGAACTTGCTGCCAAGCTGGTGGTTAAGGTGATGGTTATTTGTGGCAGTGTTCTTATTTTTTGAGGAATTCAAGTCTCATTATGTTGGTTACTCAATGCTTTGTCTATTGTTTTAACCTGAACAGGAAGCTCTAAGGTCAAGAGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCAGACTATCCTGTGTTGCCGATGCCAGCAACTCCAAGAAAGAAACATAATGTGCTTAGTTCACTTCTCTTTGGAAAGAAATCTCAAAACTCGACAAACAAAGGAACTAATAAGCTTTCTGCAGTTGGTATTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGTCACTCTTAGACTATAACTGCAAAATTTATATTTGCATGCTGCCTTTTAAAGTTTAGTAGTTCTTTTGTGCCATCATCAACAAGTGATTGGAACAAAAATGTTTAGGGTCTGTTTACTTCGGGTGTTTTCTGTTTTTCATTTTAACTGATAAAATAAATATTAGAGAGACATTATAGACATTTTTGAAAATGCATTTTATAAATGGATTCAATATTTCTGAAAATTCTGAAAAATGTCAAAACATTGTTGTTAGTGTTTCCGAAAATGCACTTTCTCTAGTTTGCCTTCATGTTCTCTCAATGACAGCCAAAAAGATTCATAATCAAATGTCATTCCAGCTGCCGATGTAAAAAGTAAAAATTGAAAATGTTTTTAGAAAGTAAACATGTCCTTATTTTCCCATTTTGGGTGTATTCATGTGTTTGATAAGATTTTTTGTTTTCTTAAAATGCAGGCTAGGTAAGGATGTTCCTTCCAATACAAATTCTGGTATTCACCGCTGTGCAGTTTGCCTAGCAGATCAACCATCTGGTGATGGTTTACCAGTGAACACCGATCATTTTATCACTCCGGTATCTAAGCCATGGGAAGGTCCATTCCTCTGCACAAACTGTCAGAAGAAGAAAGACGCCATGGAAGGAAAAAGGTCCTGA
Protein sequence

>MS.gene005288.t1

MSKTELSRMKQPLVPLATLIGRELRNGKTEKPFVKYGQAGLAKKGEDYFLIKTDCHRVPGDSSTSFSVFAILDGHNGISAAIFAKENIINNVMSAIPQAVSREEWLQALPRALVVAFVKTDMEFQKKGETSGTTATFVIIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDTAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPVLPMPATPRKKHNVLSSLLFGKKSQNSTNKGTNKLSAVGIVEELFEEGSAMLTERLGKDVPSNTNSGIHRCAVCLADQPSGDGLPVNTDHFITPVSKPWEGPFLCTNCQKKKDAMEGKRS