Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005541.t1 | XP_024639356.1 | 99.5 | 562 | 3 | 0 | 1 | 562 | 1 | 562 | 0.00E+00 | 1120.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005541.t1 | Q54V77 | 61.0 | 569 | 202 | 7 | 1 | 551 | 1 | 567 | 3.5e-196 | 686.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005541.t1 | G7IDT8 | 99.5 | 562 | 3 | 0 | 1 | 562 | 1 | 562 | 0.0e+00 | 1120.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene93045 | MS.gene005541 | PPI |
| MS.gene95693 | MS.gene005541 | PPI |
| MS.gene056502 | MS.gene005541 | PPI |
| MS.gene008780 | MS.gene005541 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005541.t1 | MTR_1g087440 | 99.466 | 562 | 3 | 0 | 1 | 562 | 1 | 562 | 0.0 | 1152 |
| MS.gene005541.t1 | MTR_1g087440 | 99.356 | 466 | 3 | 0 | 1 | 466 | 1 | 466 | 0.0 | 953 |
| MS.gene005541.t1 | MTR_8g446910 | 71.228 | 570 | 156 | 2 | 1 | 562 | 1 | 570 | 0.0 | 853 |
| MS.gene005541.t1 | MTR_2g062770 | 72.711 | 546 | 149 | 0 | 1 | 546 | 1 | 546 | 0.0 | 839 |
| MS.gene005541.t1 | MTR_8g070540 | 71.014 | 552 | 160 | 0 | 1 | 552 | 1 | 552 | 0.0 | 833 |
| MS.gene005541.t1 | MTR_2g062770 | 71.227 | 497 | 143 | 0 | 50 | 546 | 1 | 497 | 0.0 | 752 |
| MS.gene005541.t1 | MTR_8g070540 | 71.429 | 483 | 138 | 0 | 1 | 483 | 1 | 483 | 0.0 | 726 |
| MS.gene005541.t1 | MTR_8g070540 | 68.000 | 475 | 152 | 0 | 78 | 552 | 1 | 475 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene005541.t1 | AT4G02120 | 83.633 | 556 | 91 | 0 | 1 | 556 | 1 | 556 | 0.0 | 979 |
| MS.gene005541.t1 | AT4G02120 | 80.450 | 578 | 91 | 1 | 1 | 556 | 1 | 578 | 0.0 | 969 |
| MS.gene005541.t1 | AT4G02120 | 78.957 | 556 | 78 | 1 | 1 | 556 | 1 | 517 | 0.0 | 904 |
| MS.gene005541.t1 | AT4G02120 | 86.364 | 484 | 66 | 0 | 1 | 484 | 1 | 484 | 0.0 | 873 |
| MS.gene005541.t1 | AT3G12670 | 73.551 | 552 | 145 | 1 | 1 | 552 | 1 | 551 | 0.0 | 844 |
| MS.gene005541.t1 | AT4G02120 | 86.695 | 466 | 62 | 0 | 1 | 466 | 1 | 466 | 0.0 | 842 |
| MS.gene005541.t1 | AT1G30820 | 70.962 | 551 | 160 | 0 | 1 | 551 | 1 | 551 | 0.0 | 835 |
| MS.gene005541.t1 | AT4G20320 | 69.873 | 551 | 166 | 0 | 1 | 551 | 1 | 551 | 0.0 | 803 |
| MS.gene005541.t1 | AT4G20320 | 69.873 | 551 | 166 | 0 | 1 | 551 | 1 | 551 | 0.0 | 803 |
| MS.gene005541.t1 | AT4G20320 | 69.873 | 551 | 166 | 0 | 1 | 551 | 1 | 551 | 0.0 | 803 |
| MS.gene005541.t1 | AT4G20320 | 69.873 | 551 | 166 | 0 | 1 | 551 | 1 | 551 | 0.0 | 803 |
| MS.gene005541.t1 | AT4G20320 | 69.873 | 551 | 166 | 0 | 1 | 551 | 1 | 551 | 0.0 | 803 |
| MS.gene005541.t1 | AT2G34890 | 65.302 | 562 | 193 | 1 | 1 | 560 | 1 | 562 | 0.0 | 784 |
| MS.gene005541.t1 | AT4G20320 | 68.327 | 502 | 159 | 0 | 50 | 551 | 1 | 502 | 0.0 | 735 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATGATGTACCAAATATT+TGG | 0.205073 | 1.1:+64820250 | MS.gene005541:CDS |
| ATTGTTCTCTCTGGCATATT+TGG | 0.242741 | 1.1:-64822563 | None:intergenic |
| TTTATAGGTTGATTTGGATT+TGG | 0.257444 | 1.1:+64817027 | MS.gene005541:intron |
| TTATAGGTTGATTTGGATTT+GGG | 0.261073 | 1.1:+64817028 | MS.gene005541:intron |
| GTAGCTTGTGTCTTGGTTCC+AGG | 0.263724 | 1.1:+64822499 | MS.gene005541:CDS |
| CATGCTGCGGCATGTGCTTC+TGG | 0.277150 | 1.1:-64821903 | None:intergenic |
| GTCTTGGTTCCAGGAGGATT+TGG | 0.288037 | 1.1:+64822508 | MS.gene005541:CDS |
| AGGGGAATATGCCAAATATT+TGG | 0.292011 | 1.1:-64820261 | None:intergenic |
| ATGAAAATTACAACAGGATT+TGG | 0.292322 | 1.1:-64822784 | None:intergenic |
| TTACAACAGGATTTGGTGTT+TGG | 0.292770 | 1.1:-64822777 | None:intergenic |
| AATTGCACGCCTACATAATA+TGG | 0.299023 | 1.1:-64824656 | None:intergenic |
| CTAGTCATAAACAGGGTTCT+AGG | 0.329918 | 1.1:+64822877 | MS.gene005541:intron |
| AGAGACTCACTCTAAGTAAC+AGG | 0.332129 | 1.1:-64820281 | None:intergenic |
| GGGTCTTCATTTCCATCAAC+CGG | 0.349986 | 1.1:-64817454 | None:intergenic |
| GGCGGAGTCGTTAGCGGCCT+CGG | 0.350600 | 1.1:+64816652 | MS.gene005541:CDS |
| AGCCGACACAACACAGTGTC+AGG | 0.360915 | 1.1:+64819067 | MS.gene005541:CDS |
| CCTTACTTGGGGATTTGCTT+GGG | 0.363800 | 1.1:+64822589 | MS.gene005541:CDS |
| CCAGGCCGAGATTTGAATTC+GGG | 0.365733 | 1.1:-64824683 | None:intergenic |
| TACAACAGGATTTGGTGTTT+GGG | 0.372108 | 1.1:-64822776 | None:intergenic |
| TCCTTACTTGGGGATTTGCT+TGG | 0.377880 | 1.1:+64822588 | MS.gene005541:CDS |
| CCCAGGCCGAGATTTGAATT+CGG | 0.381611 | 1.1:-64824684 | None:intergenic |
| CTACACCCAACACTGGTATC+AGG | 0.389842 | 1.1:-64818944 | None:intergenic |
| TACTACTGGGAAAATATATC+AGG | 0.394580 | 1.1:+64817099 | MS.gene005541:CDS |
| ATTGAAACTTTAGAAGAAGC+TGG | 0.397254 | 1.1:+64824372 | MS.gene005541:CDS |
| CGCGGAGGCCGCAGGCTTTG+AGG | 0.401516 | 1.1:-64816708 | None:intergenic |
| ATTCAATGTGCAGCCTCTGC+TGG | 0.411306 | 1.1:+64820078 | MS.gene005541:intron |
| AGAGAACAATGTTCCTTACT+TGG | 0.411823 | 1.1:+64822576 | MS.gene005541:CDS |
| GGTCTCATATTGGCGGCAAC+GGG | 0.413570 | 1.1:+64825076 | MS.gene005541:intron |
| TCACCGATGCAATCAGAAAC+TGG | 0.416127 | 1.1:+64817410 | MS.gene005541:CDS |
| TCAGTCCATTGCCGCAAATC+AGG | 0.416330 | 1.1:-64821079 | None:intergenic |
| TTTGCGGCAATGGACTGATA+TGG | 0.421515 | 1.1:+64821084 | MS.gene005541:CDS |
| AAGGATAATAATATTACTAC+TGG | 0.423934 | 1.1:+64817085 | MS.gene005541:CDS |
| CGCGTCACCTCCATCAAAAT+CGG | 0.434250 | 1.1:+64816727 | MS.gene005541:CDS |
| TTCATATTTATCTGTTGTAA+AGG | 0.435122 | 1.1:+64821266 | MS.gene005541:CDS |
| GAAGCTGGGCTAAAATTTGT+TGG | 0.438329 | 1.1:+64824387 | MS.gene005541:CDS |
| CACCTCCTGATTTGCGGCAA+TGG | 0.440971 | 1.1:+64821074 | MS.gene005541:CDS |
| GTTGCTGTGATCCCGGTTGA+TGG | 0.443273 | 1.1:+64817442 | MS.gene005541:CDS |
| GCAGCAATCCAGTCAATTGA+TGG | 0.445868 | 1.1:-64821745 | None:intergenic |
| TGCCGTAGAGCCTCAATAAA+CGG | 0.445911 | 1.1:-64817635 | None:intergenic |
| TGACATTGTTCAGGTAAATC+CGG | 0.446706 | 1.1:+64824344 | MS.gene005541:intron |
| TGCTTGAGAAGGAACGTAAA+GGG | 0.447613 | 1.1:+64817219 | MS.gene005541:CDS |
| GATGTTTGTGTGATTGAGCT+TGG | 0.449727 | 1.1:+64817481 | MS.gene005541:CDS |
| GAGGACGACGCCGATGCTGC+TGG | 0.450311 | 1.1:-64816689 | None:intergenic |
| GAGAACAATGTTCCTTACTT+GGG | 0.452256 | 1.1:+64822577 | MS.gene005541:CDS |
| ATTGTGCACTGTCATCTTCA+AGG | 0.452441 | 1.1:-64821774 | None:intergenic |
| AATTACCAGGTATGGCAATT+CGG | 0.452917 | 1.1:+64824204 | MS.gene005541:intron |
| ATTGGCGGCAACGGGGAAGT+TGG | 0.454817 | 1.1:+64825084 | MS.gene005541:CDS |
| GATACCAGTGTTGGGTGTAG+TGG | 0.458939 | 1.1:+64818947 | MS.gene005541:CDS |
| TCTAAAGTTTCAATAACATC+CGG | 0.459751 | 1.1:-64824363 | None:intergenic |
| GTCGTTAGCGGCCTCGGCAA+AGG | 0.462544 | 1.1:+64816658 | MS.gene005541:CDS |
| AAAACTTCTCCATGTTCAAA+AGG | 0.464491 | 1.1:-64816868 | None:intergenic |
| GTCAGGGAACTAAGAGCATT+GGG | 0.465525 | 1.1:+64819084 | MS.gene005541:CDS |
| ATGAAGTACGTTCTCATCTC+CGG | 0.466118 | 1.1:+64816631 | MS.gene005541:CDS |
| CCCGAATTCAAATCTCGGCC+TGG | 0.467639 | 1.1:+64824683 | MS.gene005541:CDS |
| ATCACTAGCATTCATGAGAA+TGG | 0.472024 | 1.1:+64825115 | MS.gene005541:CDS |
| CATTGAGACCATCAATTGAC+TGG | 0.472847 | 1.1:+64821737 | MS.gene005541:CDS |
| ATACCAGTGTTGGGTGTAGT+GGG | 0.477063 | 1.1:+64818948 | MS.gene005541:CDS |
| GTAAGGAACATTGTTCTCTC+TGG | 0.480928 | 1.1:-64822572 | None:intergenic |
| GGAGGTGACGCGGAGGCCGC+AGG | 0.484019 | 1.1:-64816716 | None:intergenic |
| AACAAAGCAGATGGTCTCCC+AGG | 0.484640 | 1.1:-64824701 | None:intergenic |
| CTATACTGTAGGTCTCATAT+TGG | 0.486234 | 1.1:+64825066 | MS.gene005541:intron |
| GGCGTCACCGCCAGCAGCAT+CGG | 0.487935 | 1.1:+64816679 | MS.gene005541:CDS |
| TCAATCACACAAACATCAGC+AGG | 0.489125 | 1.1:-64817475 | None:intergenic |
| CCTACATAATATGGATGACT+TGG | 0.496534 | 1.1:-64824647 | None:intergenic |
| CCCAAGCAAATCCCCAAGTA+AGG | 0.496781 | 1.1:-64822589 | None:intergenic |
| GCAGAGTGTAGCTTGTGTCT+TGG | 0.496933 | 1.1:+64822492 | MS.gene005541:intron |
| TACAGCAGCTTAACTTACTT+AGG | 0.505369 | 1.1:+64820412 | MS.gene005541:CDS |
| CCGAATTCAAATCTCGGCCT+GGG | 0.505440 | 1.1:+64824684 | MS.gene005541:CDS |
| AGGTCTCATATTGGCGGCAA+CGG | 0.505545 | 1.1:+64825075 | MS.gene005541:intron |
| TTGAAACTTTAGAAGAAGCT+GGG | 0.507446 | 1.1:+64824373 | MS.gene005541:CDS |
| TGGATGAGACAGAAGTTGTC+AGG | 0.508265 | 1.1:-64818915 | None:intergenic |
| TCCTTGGTACTTTCCAGCAG+AGG | 0.508640 | 1.1:-64820091 | None:intergenic |
| TCTGGCATGAAAATTACAAC+AGG | 0.511552 | 1.1:-64822790 | None:intergenic |
| TACTGTAGGTCTCATATTGG+CGG | 0.513078 | 1.1:+64825069 | MS.gene005541:intron |
| TGTCAGGGAACTAAGAGCAT+TGG | 0.513673 | 1.1:+64819083 | MS.gene005541:CDS |
| TGCCGTTTATTGAGGCTCTA+CGG | 0.516145 | 1.1:+64817633 | MS.gene005541:CDS |
| TTCATCCCGAATTCAAATCT+CGG | 0.519745 | 1.1:+64824678 | MS.gene005541:CDS |
| GTATGGCAATTCGGAGTATG+TGG | 0.526581 | 1.1:+64824213 | MS.gene005541:CDS |
| CCAGCGTCAATGTTCAAATA+CGG | 0.527929 | 1.1:-64816835 | None:intergenic |
| TGTTAGCCTGATACCAGTGT+TGG | 0.528405 | 1.1:+64818938 | MS.gene005541:CDS |
| ACCAGTGTTGGGTGTAGTGG+GGG | 0.530013 | 1.1:+64818950 | MS.gene005541:CDS |
| CCAAGTCATCCATATTATGT+AGG | 0.530338 | 1.1:+64824647 | MS.gene005541:CDS |
| GTGCAACACAAGCATGCAGT+AGG | 0.531316 | 1.1:-64821711 | None:intergenic |
| TGAGTCTATGCCGTTTATTG+AGG | 0.534928 | 1.1:+64817625 | MS.gene005541:CDS |
| CCACGATCTCCAAATCCTCC+TGG | 0.535514 | 1.1:-64822517 | None:intergenic |
| CTGGGCTAAAATTTGTTGGA+AGG | 0.539194 | 1.1:+64824391 | MS.gene005541:CDS |
| ATCTCCGGCGGAGTCGTTAG+CGG | 0.542697 | 1.1:+64816646 | MS.gene005541:CDS |
| GGATGAAAGCGGAAGACGAA+TGG | 0.543231 | 1.1:+64824413 | MS.gene005541:CDS |
| TGAGTCAGTTGCTGTGATCC+CGG | 0.544517 | 1.1:+64817435 | MS.gene005541:CDS |
| GTTTGTGTGATTGAGCTTGG+AGG | 0.545170 | 1.1:+64817484 | MS.gene005541:CDS |
| GTGCTACACCTCCTGATTTG+CGG | 0.545667 | 1.1:+64821068 | MS.gene005541:CDS |
| TCCCTGACACTGTGTTGTGT+CGG | 0.548570 | 1.1:-64819069 | None:intergenic |
| TTTGGAGATCGTGGTGTGAG+AGG | 0.552633 | 1.1:+64822526 | MS.gene005541:CDS |
| GTTAGCCTGATACCAGTGTT+GGG | 0.554596 | 1.1:+64818939 | MS.gene005541:CDS |
| TCTTGATGTTACACTTACAA+AGG | 0.556810 | 1.1:+64817066 | MS.gene005541:CDS |
| AGAACAATGTTCCTTACTTG+GGG | 0.557436 | 1.1:+64822578 | MS.gene005541:CDS |
| TGCTGTCATACCCACTTGAA+AGG | 0.561108 | 1.1:-64817663 | None:intergenic |
| GAACGTAAAGGGGATTATCT+CGG | 0.561874 | 1.1:+64817230 | MS.gene005541:CDS |
| TACCAGTGTTGGGTGTAGTG+GGG | 0.563851 | 1.1:+64818949 | MS.gene005541:CDS |
| ACACTGGTATCAGGCTAACA+TGG | 0.566475 | 1.1:-64818935 | None:intergenic |
| GTGCTTGAGAAGGAACGTAA+AGG | 0.567093 | 1.1:+64817218 | MS.gene005541:CDS |
| TGGGCTAAAATTTGTTGGAA+GGG | 0.568783 | 1.1:+64824392 | MS.gene005541:CDS |
| CCAGGAGGATTTGGAGATCG+TGG | 0.581850 | 1.1:+64822517 | MS.gene005541:CDS |
| AATCCAGTTTCTGATTGCAT+CGG | 0.583198 | 1.1:-64817413 | None:intergenic |
| CAGGTTAGGATTGCCATGGT+GGG | 0.589890 | 1.1:+64821222 | MS.gene005541:intron |
| ATGGGAAGTACCATGAGACT+TGG | 0.591140 | 1.1:+64822906 | MS.gene005541:CDS |
| TCCATGTTCAAAAGGAGACA+TGG | 0.591963 | 1.1:-64816860 | None:intergenic |
| GCAAATCAGGAGGTGTAGCA+CGG | 0.592136 | 1.1:-64821066 | None:intergenic |
| TTTACAGGTTAGGATTGCCA+TGG | 0.595375 | 1.1:+64821218 | MS.gene005541:intron |
| TGCAACACAAGCATGCAGTA+GGG | 0.596048 | 1.1:-64821710 | None:intergenic |
| ATTGAGCTTGGAGGCACTGT+GGG | 0.598258 | 1.1:+64817493 | MS.gene005541:CDS |
| TGGCGGTGACGCCTTTGCCG+AGG | 0.599015 | 1.1:-64816669 | None:intergenic |
| ACAGGTTAGGATTGCCATGG+TGG | 0.599284 | 1.1:+64821221 | MS.gene005541:intron |
| ACGGCAATTATCCTTTCAAG+TGG | 0.601495 | 1.1:+64817652 | MS.gene005541:CDS |
| CAGAAGCACATGCCGCAGCA+TGG | 0.601979 | 1.1:+64821904 | MS.gene005541:CDS |
| GAGGCCGCTAACGACTCCGC+CGG | 0.602079 | 1.1:-64816650 | None:intergenic |
| TTTAGCAAGTCGCTCTGCTG+AGG | 0.603158 | 1.1:+64819122 | MS.gene005541:CDS |
| ACTGAAAACTTACTGGAACA+TGG | 0.606549 | 1.1:-64820132 | None:intergenic |
| CTTCAGAGTCTTCCATGCTG+CGG | 0.607051 | 1.1:-64821916 | None:intergenic |
| CTGCTGTAAAATTGAGTGGT+GGG | 0.610647 | 1.1:-64820397 | None:intergenic |
| CTGATTGCATCGGTGATATG+CGG | 0.611112 | 1.1:-64817403 | None:intergenic |
| ATTCGGAGTATGTGGATGAA+CGG | 0.613690 | 1.1:+64824221 | MS.gene005541:CDS |
| TTTGTTGGAAGGGATGAAAG+CGG | 0.613844 | 1.1:+64824402 | MS.gene005541:CDS |
| GAGCGACTTGCTAAAAGATG+AGG | 0.613956 | 1.1:-64819114 | None:intergenic |
| GCTTGTGTCTTGGTTCCAGG+AGG | 0.615728 | 1.1:+64822502 | MS.gene005541:CDS |
| GGTCTTCATTTCCATCAACC+GGG | 0.617073 | 1.1:-64817453 | None:intergenic |
| TCTTCGAGATCCAAGTCTCA+TGG | 0.624956 | 1.1:-64822916 | None:intergenic |
| TGAAAGCGGAAGACGAATGG+AGG | 0.626991 | 1.1:+64824416 | MS.gene005541:CDS |
| GCCATGGTGGGAAAATATGT+TGG | 0.628848 | 1.1:+64821234 | MS.gene005541:CDS |
| GTCCATTGCCGCAAATCAGG+AGG | 0.628942 | 1.1:-64821076 | None:intergenic |
| CGGCAATTATCCTTTCAAGT+GGG | 0.631841 | 1.1:+64817653 | MS.gene005541:CDS |
| GCCGACACAACACAGTGTCA+GGG | 0.640779 | 1.1:+64819068 | MS.gene005541:CDS |
| GCTTGAGAAGGAACGTAAAG+GGG | 0.642782 | 1.1:+64817220 | MS.gene005541:CDS |
| GCCTCTGCTGGAAAGTACCA+AGG | 0.645176 | 1.1:+64820090 | MS.gene005541:intron |
| ACAGGGTTCTAGGACTCACA+TGG | 0.646100 | 1.1:+64822887 | MS.gene005541:intron |
| GAGACTCACTCTAAGTAACA+GGG | 0.646615 | 1.1:-64820280 | None:intergenic |
| TGTTCTTGATGATGGCGGAG+AGG | 0.649503 | 1.1:+64816891 | MS.gene005541:CDS |
| GATTGAGCTTGGAGGCACTG+TGG | 0.652060 | 1.1:+64817492 | MS.gene005541:CDS |
| CGCAGCATGGAAGACTCTGA+AGG | 0.652129 | 1.1:+64821917 | MS.gene005541:CDS |
| CCGTATTTGAACATTGACGC+TGG | 0.659655 | 1.1:+64816835 | MS.gene005541:CDS |
| GCTGCTGTAAAATTGAGTGG+TGG | 0.662926 | 1.1:-64820398 | None:intergenic |
| AGGATAATAATATTACTACT+GGG | 0.667804 | 1.1:+64817086 | MS.gene005541:CDS |
| TAAGCTGCTGTAAAATTGAG+TGG | 0.672139 | 1.1:-64820401 | None:intergenic |
| AAGTACGTTCTCATCTCCGG+CGG | 0.674090 | 1.1:+64816634 | MS.gene005541:CDS |
| GTCTCATATTGGCGGCAACG+GGG | 0.674517 | 1.1:+64825077 | MS.gene005541:CDS |
| GACGACGCCGATGCTGCTGG+CGG | 0.688026 | 1.1:-64816686 | None:intergenic |
| GGCGTCGTCCTCAAAGCCTG+CGG | 0.692971 | 1.1:+64816700 | MS.gene005541:CDS |
| CAATCACACAAACATCAGCA+GGG | 0.701082 | 1.1:-64817474 | None:intergenic |
| AGACTCACTCTAAGTAACAG+GGG | 0.704240 | 1.1:-64820279 | None:intergenic |
| CAGGGTTCTAGGACTCACAT+GGG | 0.704702 | 1.1:+64822888 | MS.gene005541:intron |
| TAGTACTAACAGATTCAGTG+AGG | 0.746597 | 1.1:-64821123 | None:intergenic |
| ACGGCATCGTCATAGATACG+AGG | 0.761487 | 1.1:+64824240 | MS.gene005541:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 64816631 | 64825144 | 64816631 | ID=MS.gene005541 |
| chr1.1 | mRNA | 64816631 | 64825144 | 64816631 | ID=MS.gene005541.t1;Parent=MS.gene005541 |
| chr1.1 | exon | 64816631 | 64816748 | 64816631 | ID=MS.gene005541.t1.exon1;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64816631 | 64816748 | 64816631 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64816833 | 64816912 | 64816833 | ID=MS.gene005541.t1.exon2;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64816833 | 64816912 | 64816833 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64817034 | 64817120 | 64817034 | ID=MS.gene005541.t1.exon3;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64817034 | 64817120 | 64817034 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64817215 | 64817265 | 64817215 | ID=MS.gene005541.t1.exon4;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64817215 | 64817265 | 64817215 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64817397 | 64817514 | 64817397 | ID=MS.gene005541.t1.exon5;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64817397 | 64817514 | 64817397 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64817618 | 64817674 | 64817618 | ID=MS.gene005541.t1.exon6;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64817618 | 64817674 | 64817618 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64818913 | 64818977 | 64818913 | ID=MS.gene005541.t1.exon7;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64818913 | 64818977 | 64818913 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64819060 | 64819143 | 64819060 | ID=MS.gene005541.t1.exon8;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64819060 | 64819143 | 64819060 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64820091 | 64820141 | 64820091 | ID=MS.gene005541.t1.exon9;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64820091 | 64820141 | 64820091 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64820231 | 64820293 | 64820231 | ID=MS.gene005541.t1.exon10;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64820231 | 64820293 | 64820231 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64820387 | 64820433 | 64820387 | ID=MS.gene005541.t1.exon11;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64820387 | 64820433 | 64820387 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64821066 | 64821135 | 64821066 | ID=MS.gene005541.t1.exon12;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64821066 | 64821135 | 64821066 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64821225 | 64821287 | 64821225 | ID=MS.gene005541.t1.exon13;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64821225 | 64821287 | 64821225 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64821709 | 64821798 | 64821709 | ID=MS.gene005541.t1.exon14;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64821709 | 64821798 | 64821709 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64821900 | 64821938 | 64821900 | ID=MS.gene005541.t1.exon15;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64821900 | 64821938 | 64821900 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64822496 | 64822645 | 64822496 | ID=MS.gene005541.t1.exon16;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64822496 | 64822645 | 64822496 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64822736 | 64822813 | 64822736 | ID=MS.gene005541.t1.exon17;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64822736 | 64822813 | 64822736 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64822891 | 64822976 | 64822891 | ID=MS.gene005541.t1.exon18;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64822891 | 64822976 | 64822891 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64824213 | 64824261 | 64824213 | ID=MS.gene005541.t1.exon19;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64824213 | 64824261 | 64824213 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64824357 | 64824437 | 64824357 | ID=MS.gene005541.t1.exon20;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64824357 | 64824437 | 64824357 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64824635 | 64824728 | 64824635 | ID=MS.gene005541.t1.exon21;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64824635 | 64824728 | 64824635 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| chr1.1 | exon | 64825077 | 64825144 | 64825077 | ID=MS.gene005541.t1.exon22;Parent=MS.gene005541.t1 |
| chr1.1 | CDS | 64825077 | 64825144 | 64825077 | ID=cds.MS.gene005541.t1;Parent=MS.gene005541.t1 |
| Gene Sequence |
| Protein sequence |
