Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006240.t1 | AIT98181.1 | 98.1 | 309 | 6 | 0 | 1 | 309 | 1 | 309 | 4.70E-170 | 607.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006240.t1 | O49814 | 71.4 | 294 | 75 | 3 | 17 | 309 | 31 | 316 | 9.7e-116 | 417.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006240.t1 | A0A097KXR0 | 98.1 | 309 | 6 | 0 | 1 | 309 | 1 | 309 | 3.4e-170 | 607.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006240 | MS.gene93230 | PPI |
| MS.gene006240 | MS.gene010815 | PPI |
| MS.gene006240 | MS.gene36168 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006240.t1 | MTR_1g100070 | 89.968 | 309 | 18 | 2 | 1 | 309 | 1 | 296 | 0.0 | 523 |
| MS.gene006240.t1 | MTR_1g100070 | 83.483 | 333 | 18 | 3 | 1 | 309 | 1 | 320 | 0.0 | 510 |
| MS.gene006240.t1 | MTR_1g100070 | 87.970 | 266 | 19 | 2 | 1 | 266 | 1 | 253 | 1.07e-163 | 457 |
| MS.gene006240.t1 | MTR_6g048440 | 72.468 | 316 | 77 | 4 | 1 | 309 | 1 | 313 | 5.73e-156 | 438 |
| MS.gene006240.t1 | MTR_6g048440 | 71.821 | 291 | 72 | 4 | 1 | 284 | 1 | 288 | 2.60e-149 | 422 |
| MS.gene006240.t1 | MTR_6g048440 | 69.963 | 273 | 72 | 4 | 1 | 266 | 1 | 270 | 7.01e-135 | 384 |
| MS.gene006240.t1 | MTR_6g048440 | 66.957 | 230 | 66 | 4 | 1 | 223 | 1 | 227 | 1.87e-104 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006240.t1 | AT4G25700 | 66.559 | 311 | 86 | 5 | 1 | 306 | 1 | 298 | 1.14e-144 | 410 |
| MS.gene006240.t1 | AT5G52570 | 67.722 | 316 | 74 | 8 | 1 | 307 | 1 | 297 | 1.39e-135 | 386 |
| MS.gene006240.t1 | AT4G25700 | 59.211 | 228 | 75 | 5 | 1 | 223 | 1 | 215 | 3.40e-85 | 255 |
| MS.gene006240.t1 | AT4G25700 | 59.211 | 228 | 75 | 5 | 1 | 223 | 1 | 215 | 3.40e-85 | 255 |
| MS.gene006240.t1 | AT5G52570 | 40.064 | 312 | 98 | 11 | 1 | 307 | 1 | 228 | 7.32e-44 | 150 |
Find 88 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGTAGGTATGGAATAT+TGG | 0.214997 | 1.1:+71871027 | MS.gene006240:intron |
| TTCATCTGGTTAGTGTGTTT+TGG | 0.236695 | 1.1:-71870462 | None:intergenic |
| GGTCTTGGAATTACGGTGTT+TGG | 0.277671 | 1.1:+71871615 | MS.gene006240:CDS |
| GCAATTGCTCTTCTCTCATA+TGG | 0.287011 | 1.1:+71871395 | MS.gene006240:CDS |
| CACACTAACCAGATGAAAAC+TGG | 0.295803 | 1.1:+71870468 | MS.gene006240:CDS |
| TTCTTGTTCTTTGGGTTTGA+AGG | 0.312771 | 1.1:-71870401 | None:intergenic |
| TAGCTTTGGTGTTACCTCTA+TGG | 0.317708 | 1.1:+71870602 | MS.gene006240:CDS |
| TTAGGTAGGTATGGAATATT+GGG | 0.328698 | 1.1:+71871028 | MS.gene006240:intron |
| CTTCACCGTTTGTGTTCTAA+TGG | 0.335091 | 1.1:+71870434 | MS.gene006240:CDS |
| TGAGGGCTGTGTTTACTGTT+AGG | 0.353483 | 1.1:-71870507 | None:intergenic |
| GTCTTGGAATTACGGTGTTT+GGG | 0.363241 | 1.1:+71871616 | MS.gene006240:CDS |
| GATGGGCTCATGAGGTTCTA+TGG | 0.363709 | 1.1:+71871054 | MS.gene006240:CDS |
| GCTATGACGGAAACCTCTTA+AGG | 0.364201 | 1.1:-71870373 | None:intergenic |
| TGACTAGGGTCTTGGAATTA+CGG | 0.376865 | 1.1:+71871608 | MS.gene006240:intron |
| TGAGGGTTGGAGGAGATTGT+AGG | 0.377556 | 1.1:-71870304 | None:intergenic |
| TTGGTGCCTGGTCTCTGCTT+TGG | 0.387095 | 1.1:+71871434 | MS.gene006240:CDS |
| GGGAAGAAGTTGAGGGTTGG+AGG | 0.387923 | 1.1:-71870314 | None:intergenic |
| GTATGGAATATTGGGCTAGA+TGG | 0.394991 | 1.1:+71871036 | MS.gene006240:CDS |
| GAGGAGATTGTAGGGCTTCA+AGG | 0.397415 | 1.1:-71870295 | None:intergenic |
| GTTCCTTGGTCTGAAATGTT+TGG | 0.410492 | 1.1:+71870895 | MS.gene006240:CDS |
| GGGGAAGGGGAAGAAGTTGA+GGG | 0.413157 | 1.1:-71870321 | None:intergenic |
| TCATCTTATGACTAGGGTCT+TGG | 0.416939 | 1.1:+71871600 | MS.gene006240:intron |
| CTATGACGGAAACCTCTTAA+GGG | 0.426369 | 1.1:-71870372 | None:intergenic |
| TTTAACAAGGGATTGGTGCC+TGG | 0.432109 | 1.1:+71871422 | MS.gene006240:CDS |
| AGGGGAAGGGGAAGAAGTTG+AGG | 0.434588 | 1.1:-71870322 | None:intergenic |
| GGCACATTTGCCCTCTCAGT+TGG | 0.435097 | 1.1:+71870916 | MS.gene006240:CDS |
| CATGTTTGTCCATGATGGAT+TGG | 0.437840 | 1.1:+71871647 | MS.gene006240:CDS |
| TTATAGATTCTCATGGCAAA+TGG | 0.438735 | 1.1:+71870641 | MS.gene006240:CDS |
| AAAACATCATTAAGCTCAAA+TGG | 0.441795 | 1.1:-71871350 | None:intergenic |
| CCCCTTTGAATTTGTCCGAA+TGG | 0.445592 | 1.1:-71871907 | None:intergenic |
| GAGGGTTGGAGGAGATTGTA+GGG | 0.445723 | 1.1:-71870303 | None:intergenic |
| GCCTACATGTTTGTCCATGA+TGG | 0.451700 | 1.1:+71871642 | MS.gene006240:CDS |
| AGCTCAAATGGTCCCTCTCT+TGG | 0.457561 | 1.1:-71871338 | None:intergenic |
| AGGGTAGTGGAGAGGTTCCT+TGG | 0.458584 | 1.1:+71870881 | MS.gene006240:intron |
| TTGTTTGCAGCTCCACCATT+CGG | 0.466820 | 1.1:+71871892 | MS.gene006240:intron |
| GGGCTTCAAGGTTGTGGCGG+TGG | 0.468130 | 1.1:-71870283 | None:intergenic |
| AGCTAGAGAAAGAGATAAGT+AGG | 0.469767 | 1.1:+71872381 | MS.gene006240:CDS |
| AACAGCTAAGATTGCCATAG+AGG | 0.474363 | 1.1:-71870616 | None:intergenic |
| AAATTCAAAGGGGTGCCATA+TGG | 0.476176 | 1.1:+71871917 | MS.gene006240:CDS |
| ACCATTCGGACAAATTCAAA+GGG | 0.476981 | 1.1:+71871906 | MS.gene006240:CDS |
| GCAGCTGTAATGTCTAGCTT+TGG | 0.479617 | 1.1:+71870588 | MS.gene006240:CDS |
| AGGAGAACAAGATCATATAC+TGG | 0.482339 | 1.1:+71872401 | MS.gene006240:CDS |
| TATGAGAGAAGAGCAATTGC+AGG | 0.484302 | 1.1:-71871392 | None:intergenic |
| GAAGTAGGGCACGTTGGCAA+TGG | 0.491586 | 1.1:-71871694 | None:intergenic |
| AGACCTCATGCATGTGCCAC+AGG | 0.495599 | 1.1:-71871085 | None:intergenic |
| ACGTTGGCAATGGGACCCAC+AGG | 0.500337 | 1.1:-71871684 | None:intergenic |
| AGCAGCAACTCTTGTGAAGT+AGG | 0.501312 | 1.1:-71871709 | None:intergenic |
| AAGGGGAAGAAGTTGAGGGT+TGG | 0.509214 | 1.1:-71870317 | None:intergenic |
| TATGGAATATTGGGCTAGAT+GGG | 0.511988 | 1.1:+71871037 | MS.gene006240:CDS |
| ATTGTAGGGCTTCAAGGTTG+TGG | 0.512077 | 1.1:-71870289 | None:intergenic |
| AAGTAGGGCACGTTGGCAAT+GGG | 0.513920 | 1.1:-71871693 | None:intergenic |
| ATCTTCCATTAGAACACAAA+CGG | 0.516336 | 1.1:-71870439 | None:intergenic |
| CACCATTCGGACAAATTCAA+AGG | 0.517507 | 1.1:+71871905 | MS.gene006240:CDS |
| CTTTGAATTTGTCCGAATGG+TGG | 0.523450 | 1.1:-71871904 | None:intergenic |
| GTGCAGGAAGTTGAAGAAGT+GGG | 0.525266 | 1.1:+71872347 | MS.gene006240:intron |
| CTGTTTATTATAGATTCTCA+TGG | 0.538973 | 1.1:+71870634 | MS.gene006240:CDS |
| GGTGCAGGAAGTTGAAGAAG+TGG | 0.541999 | 1.1:+71872346 | MS.gene006240:intron |
| GGGCTGTGTTTACTGTTAGG+AGG | 0.545643 | 1.1:-71870504 | None:intergenic |
| TCTTATGAACCAATCCATCA+TGG | 0.562531 | 1.1:-71871656 | None:intergenic |
| TTCCCTGTGGCACATGCATG+AGG | 0.571758 | 1.1:+71871082 | MS.gene006240:CDS |
| TTGTTTGTATGATAGGGTAG+TGG | 0.576953 | 1.1:+71870868 | MS.gene006240:intron |
| GGTGGAAAGTTCAGCCGCCA+TGG | 0.584774 | 1.1:-71870265 | None:intergenic |
| GCAGCAACTCTTGTGAAGTA+GGG | 0.586414 | 1.1:-71871708 | None:intergenic |
| CAGGAAGTTGAAGAAGTGGG+AGG | 0.586564 | 1.1:+71872350 | MS.gene006240:intron |
| TAGACATTACAGCTGCAACT+AGG | 0.594222 | 1.1:-71870581 | None:intergenic |
| AGGAAGTTGAAGAAGTGGGA+GGG | 0.595124 | 1.1:+71872351 | MS.gene006240:intron |
| ACACTAACCAGATGAAAACT+GGG | 0.600198 | 1.1:+71870469 | MS.gene006240:CDS |
| GTCACATCATCGACCAAGAG+AGG | 0.605840 | 1.1:+71871325 | MS.gene006240:intron |
| TTGGGCTAGATGGGCTCATG+AGG | 0.606671 | 1.1:+71871046 | MS.gene006240:CDS |
| TATGACGGAAACCTCTTAAG+GGG | 0.609525 | 1.1:-71870371 | None:intergenic |
| TACAGCAGCACCAACTGAGA+GGG | 0.619847 | 1.1:-71870926 | None:intergenic |
| TTCTATGGCATGCTTCCCTG+TGG | 0.625607 | 1.1:+71871069 | MS.gene006240:CDS |
| GACCTCATGCATGTGCCACA+GGG | 0.632725 | 1.1:-71871084 | None:intergenic |
| TGTATGATAGGGTAGTGGAG+AGG | 0.645728 | 1.1:+71870873 | MS.gene006240:intron |
| GTAGGGCTTCAAGGTTGTGG+CGG | 0.647798 | 1.1:-71870286 | None:intergenic |
| TAGATTCTCATGGCAAATGG+AGG | 0.648620 | 1.1:+71870644 | MS.gene006240:CDS |
| ACTGCACCAAAGCAGAGACC+AGG | 0.649131 | 1.1:-71871440 | None:intergenic |
| TCCATCATGGACAAACATGT+AGG | 0.652573 | 1.1:-71871643 | None:intergenic |
| TCACATCATCGACCAAGAGA+GGG | 0.657623 | 1.1:+71871326 | MS.gene006240:CDS |
| GTGCCAAACATTTCAGACCA+AGG | 0.665898 | 1.1:-71870898 | None:intergenic |
| TTACAGCAGCACCAACTGAG+AGG | 0.672349 | 1.1:-71870927 | None:intergenic |
| TCTTGTGAAGTAGGGCACGT+TGG | 0.672979 | 1.1:-71871700 | None:intergenic |
| CGTTGGCAATGGGACCCACA+GGG | 0.676768 | 1.1:-71871683 | None:intergenic |
| GGTTCATAAGAGATTCCCTG+TGG | 0.688013 | 1.1:+71871668 | MS.gene006240:CDS |
| ATGACGGAAACCTCTTAAGG+GGG | 0.694254 | 1.1:-71870370 | None:intergenic |
| GTTCATAAGAGATTCCCTGT+GGG | 0.700599 | 1.1:+71871669 | MS.gene006240:CDS |
| CACTAACCAGATGAAAACTG+GGG | 0.723473 | 1.1:+71870470 | MS.gene006240:CDS |
| CCATTCGGACAAATTCAAAG+GGG | 0.749285 | 1.1:+71871907 | MS.gene006240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATATTGTTTGATTCA+CGG | + | chr1.1:71870676-71870695 | MS.gene006240:intron | 15.0% |
| !!! | AAAATGAAATTGGTTAATTT+TGG | + | chr1.1:71870981-71871000 | MS.gene006240:intron | 15.0% |
| !!! | AATTCAACATTGATTTTTTT+AGG | + | chr1.1:71871010-71871029 | MS.gene006240:intron | 15.0% |
| !!! | ATTTTTATTTTTTGTGCAAA+TGG | + | chr1.1:71871839-71871858 | MS.gene006240:intron | 15.0% |
| !!! | TTTTTATTTTTTGTGCAAAT+GGG | + | chr1.1:71871840-71871859 | MS.gene006240:intron | 15.0% |
| !! | AAAAAAAAAAACCAAGAAGA+GGG | - | chr1.1:71871980-71871999 | None:intergenic | 20.0% |
| !! | TAAACAAAAGAAAATATGAG+TGG | + | chr1.1:71871797-71871816 | MS.gene006240:intron | 20.0% |
| !! | TTAGTAAATCCCTTAATTAA+CGG | + | chr1.1:71871492-71871511 | MS.gene006240:intron | 20.0% |
| !!! | ATTTTTAGTTGCACAAAAAT+TGG | + | chr1.1:71870530-71870549 | MS.gene006240:CDS | 20.0% |
| !!! | TCATATGGTTTTTTTAACAA+GGG | + | chr1.1:71871410-71871429 | MS.gene006240:CDS | 20.0% |
| ! | AAAACATCATTAAGCTCAAA+TGG | - | chr1.1:71871353-71871372 | None:intergenic | 25.0% |
| ! | ATGTGAAAGAAAAGAGAAAA+TGG | - | chr1.1:71871135-71871154 | None:intergenic | 25.0% |
| ! | ATGTGAATAAACAAATGCAT+TGG | + | chr1.1:71871181-71871200 | MS.gene006240:intron | 25.0% |
| ! | CAAAAAAAAAAACCAAGAAG+AGG | - | chr1.1:71871981-71872000 | None:intergenic | 25.0% |
| ! | CTGTTTATTATAGATTCTCA+TGG | + | chr1.1:71870634-71870653 | MS.gene006240:CDS | 25.0% |
| ! | GATTATTCATCAATTAAGTG+TGG | + | chr1.1:71872072-71872091 | MS.gene006240:intron | 25.0% |
| ! | TCAAGCAATTCTTAATTACT+TGG | - | chr1.1:71871740-71871759 | None:intergenic | 25.0% |
| ! | TCAGCAATTGAAAATGAAAT+TGG | + | chr1.1:71870971-71870990 | MS.gene006240:intron | 25.0% |
| ! | TCATTTCAGAGAATAAATCA+GGG | - | chr1.1:71871575-71871594 | None:intergenic | 25.0% |
| ! | TGTGAAAGAAAAGAGAAAAT+GGG | - | chr1.1:71871134-71871153 | None:intergenic | 25.0% |
| ! | TTTGTGCAACTAAAAATTGA+GGG | - | chr1.1:71870527-71870546 | None:intergenic | 25.0% |
| !! | TTTTGTGCAACTAAAAATTG+AGG | - | chr1.1:71870528-71870547 | None:intergenic | 25.0% |
| !!! | ATCGTTTTTTGAATGATGTT+TGG | + | chr1.1:71870844-71870863 | MS.gene006240:intron | 25.0% |
| !!! | CAACATTGATTTTTTTAGGT+AGG | + | chr1.1:71871014-71871033 | MS.gene006240:intron | 25.0% |
| !!! | CTCATATGGTTTTTTTAACA+AGG | + | chr1.1:71871409-71871428 | MS.gene006240:CDS | 25.0% |
| !!! | TCGTTTTTTGAATGATGTTT+GGG | + | chr1.1:71870845-71870864 | MS.gene006240:intron | 25.0% |
| !!! | TGTTGATTTTCTTGTTCTTT+GGG | - | chr1.1:71870412-71870431 | None:intergenic | 25.0% |
| !!! | TTGATTTTTTTAGGTAGGTA+TGG | + | chr1.1:71871019-71871038 | MS.gene006240:intron | 25.0% |
| ATCTTCCATTAGAACACAAA+CGG | - | chr1.1:71870442-71870461 | None:intergenic | 30.0% | |
| CAAACAAACAACAAAACCAA+AGG | - | chr1.1:71871879-71871898 | None:intergenic | 30.0% | |
| CATCTTTGATTCAATGCTAT+TGG | - | chr1.1:71871289-71871308 | None:intergenic | 30.0% | |
| CCAATGAAACCGTTAATTAA+GGG | - | chr1.1:71871504-71871523 | None:intergenic | 30.0% | |
| CCTTAATTAACGGTTTCATT+GGG | + | chr1.1:71871502-71871521 | MS.gene006240:intron | 30.0% | |
| GATTCAATGCTATTGGTATA+AGG | - | chr1.1:71871282-71871301 | None:intergenic | 30.0% | |
| GTCATTTCAGAGAATAAATC+AGG | - | chr1.1:71871576-71871595 | None:intergenic | 30.0% | |
| TTAGGTAGGTATGGAATATT+GGG | + | chr1.1:71871028-71871047 | MS.gene006240:intron | 30.0% | |
| TTATAGATTCTCATGGCAAA+TGG | + | chr1.1:71870641-71870660 | MS.gene006240:CDS | 30.0% | |
| TTTAGGTAGGTATGGAATAT+TGG | + | chr1.1:71871027-71871046 | MS.gene006240:intron | 30.0% | |
| TTTCAGCTCCTACAAAATTA+CGG | - | chr1.1:71870729-71870748 | None:intergenic | 30.0% | |
| ! | ATTTGACACCGTAATTTTGT+AGG | + | chr1.1:71870718-71870737 | MS.gene006240:intron | 30.0% |
| ! | CAAATTTGGATGCATTTTGT+GGG | + | chr1.1:71872293-71872312 | MS.gene006240:intron | 30.0% |
| ! | GCAAAATATTCAAGTTAGCA+TGG | - | chr1.1:71871260-71871279 | None:intergenic | 30.0% |
| ! | TAAGTGCATGTTTGAAATGA+CGG | - | chr1.1:71870809-71870828 | None:intergenic | 30.0% |
| !! | TTTGAAGGATTTTGCTATGA+CGG | - | chr1.1:71870389-71870408 | None:intergenic | 30.0% |
| !! | TTTGGGTTGTTTGTATGATA+GGG | + | chr1.1:71870862-71870881 | MS.gene006240:intron | 30.0% |
| !!! | GTGTTGATTTTCTTGTTCTT+TGG | - | chr1.1:71870413-71870432 | None:intergenic | 30.0% |
| !!! | TGGTTTTTTTAACAAGGGAT+TGG | + | chr1.1:71871415-71871434 | MS.gene006240:CDS | 30.0% |
| AAAAGAGAAAATGGGAAGAC+TGG | - | chr1.1:71871126-71871145 | None:intergenic | 35.0% | |
| ACACTAACCAGATGAAAACT+GGG | + | chr1.1:71870469-71870488 | MS.gene006240:CDS | 35.0% | |
| ACATCCTCATCTTATGACTA+GGG | + | chr1.1:71871594-71871613 | MS.gene006240:intron | 35.0% | |
| ACCATTCGGACAAATTCAAA+GGG | + | chr1.1:71871906-71871925 | MS.gene006240:CDS | 35.0% | |
| AGCTAGAGAAAGAGATAAGT+AGG | + | chr1.1:71872381-71872400 | MS.gene006240:CDS | 35.0% | |
| AGGAGAACAAGATCATATAC+TGG | + | chr1.1:71872401-71872420 | MS.gene006240:CDS | 35.0% | |
| CCACAAAATGCATCCAAATT+TGG | - | chr1.1:71872295-71872314 | None:intergenic | 35.0% | |
| CCCAATGAAACCGTTAATTA+AGG | - | chr1.1:71871505-71871524 | None:intergenic | 35.0% | |
| CCCTTAATTAACGGTTTCAT+TGG | + | chr1.1:71871501-71871520 | MS.gene006240:intron | 35.0% | |
| CTAGTTGAGTAGTACTTATG+GGG | + | chr1.1:71872173-71872192 | MS.gene006240:intron | 35.0% | |
| GCTAGTTGAGTAGTACTTAT+GGG | + | chr1.1:71872172-71872191 | MS.gene006240:intron | 35.0% | |
| TCTTATGAACCAATCCATCA+TGG | - | chr1.1:71871659-71871678 | None:intergenic | 35.0% | |
| TGTGCAAATGGGATCTAATT+TGG | + | chr1.1:71871851-71871870 | MS.gene006240:intron | 35.0% | |
| TGTGGAGAAAAGAGAAAAAC+TGG | + | chr1.1:71872090-71872109 | MS.gene006240:intron | 35.0% | |
| TTGTTTGTATGATAGGGTAG+TGG | + | chr1.1:71870868-71870887 | MS.gene006240:intron | 35.0% | |
| ! | CCAAATTTGGATGCATTTTG+TGG | + | chr1.1:71872292-71872311 | MS.gene006240:intron | 35.0% |
| ! | TATGGAATATTGGGCTAGAT+GGG | + | chr1.1:71871037-71871056 | MS.gene006240:CDS | 35.0% |
| ! | TTCATCTGGTTAGTGTGTTT+TGG | - | chr1.1:71870465-71870484 | None:intergenic | 35.0% |
| ! | TTCTTGTTCTTTGGGTTTGA+AGG | - | chr1.1:71870404-71870423 | None:intergenic | 35.0% |
| !! | GTTTGGGTTGTTTGTATGAT+AGG | + | chr1.1:71870861-71870880 | MS.gene006240:intron | 35.0% |
| AACAGCTAAGATTGCCATAG+AGG | - | chr1.1:71870619-71870638 | None:intergenic | 40.0% | |
| AAGAAGAGGGAATGTGAATG+TGG | - | chr1.1:71871967-71871986 | None:intergenic | 40.0% | |
| AAGACCCTAGTCATAAGATG+AGG | - | chr1.1:71871601-71871620 | None:intergenic | 40.0% | |
| ACATTCACATTCCCTCTTCT+TGG | + | chr1.1:71871966-71871985 | MS.gene006240:intron | 40.0% | |
| ACTCTGATACACACGTGATT+CGG | + | chr1.1:71870774-71870793 | MS.gene006240:intron | 40.0% | |
| CACACTAACCAGATGAAAAC+TGG | + | chr1.1:71870468-71870487 | MS.gene006240:CDS | 40.0% | |
| CACCATTCGGACAAATTCAA+AGG | + | chr1.1:71871905-71871924 | MS.gene006240:CDS | 40.0% | |
| CACTAACCAGATGAAAACTG+GGG | + | chr1.1:71870470-71870489 | MS.gene006240:CDS | 40.0% | |
| CCATTCGGACAAATTCAAAG+GGG | + | chr1.1:71871907-71871926 | MS.gene006240:CDS | 40.0% | |
| CGCTAGTTGAGTAGTACTTA+TGG | + | chr1.1:71872171-71872190 | MS.gene006240:intron | 40.0% | |
| CTTCACCGTTTGTGTTCTAA+TGG | + | chr1.1:71870434-71870453 | MS.gene006240:CDS | 40.0% | |
| CTTTGAATTTGTCCGAATGG+TGG | - | chr1.1:71871907-71871926 | None:intergenic | 40.0% | |
| GACATCCTCATCTTATGACT+AGG | + | chr1.1:71871593-71871612 | MS.gene006240:intron | 40.0% | |
| GCAATTGCTCTTCTCTCATA+TGG | + | chr1.1:71871395-71871414 | MS.gene006240:CDS | 40.0% | |
| GGTCCTAAAAAGAGTCCATA+TGG | - | chr1.1:71871935-71871954 | None:intergenic | 40.0% | |
| GGTGCTAATAACACATTGCT+TGG | + | chr1.1:71872314-71872333 | MS.gene006240:intron | 40.0% | |
| GTCTTGGAATTACGGTGTTT+GGG | + | chr1.1:71871616-71871635 | MS.gene006240:CDS | 40.0% | |
| GTTCATAAGAGATTCCCTGT+GGG | + | chr1.1:71871669-71871688 | MS.gene006240:CDS | 40.0% | |
| TAGACATTACAGCTGCAACT+AGG | - | chr1.1:71870584-71870603 | None:intergenic | 40.0% | |
| TAGATTCTCATGGCAAATGG+AGG | + | chr1.1:71870644-71870663 | MS.gene006240:CDS | 40.0% | |
| TATGAGAGAAGAGCAATTGC+AGG | - | chr1.1:71871395-71871414 | None:intergenic | 40.0% | |
| TCATCTTATGACTAGGGTCT+TGG | + | chr1.1:71871600-71871619 | MS.gene006240:intron | 40.0% | |
| TCCATCATGGACAAACATGT+AGG | - | chr1.1:71871646-71871665 | None:intergenic | 40.0% | |
| TGACTAGGGTCTTGGAATTA+CGG | + | chr1.1:71871608-71871627 | MS.gene006240:intron | 40.0% | |
| ! | CTATGACGGAAACCTCTTAA+GGG | - | chr1.1:71870375-71870394 | None:intergenic | 40.0% |
| ! | GTATGGAATATTGGGCTAGA+TGG | + | chr1.1:71871036-71871055 | MS.gene006240:CDS | 40.0% |
| ! | GTGCCATATGGACTCTTTTT+AGG | + | chr1.1:71871929-71871948 | MS.gene006240:CDS | 40.0% |
| ! | GTTCCTTGGTCTGAAATGTT+TGG | + | chr1.1:71870895-71870914 | MS.gene006240:CDS | 40.0% |
| ! | TATGACGGAAACCTCTTAAG+GGG | - | chr1.1:71870374-71870393 | None:intergenic | 40.0% |
| ! | TTTCTTCCCCAGTTTTCATC+TGG | - | chr1.1:71870479-71870498 | None:intergenic | 40.0% |
| !! | AAATTCAAAGGGGTGCCATA+TGG | + | chr1.1:71871917-71871936 | MS.gene006240:CDS | 40.0% |
| !! | AACAGTGTTGGGGTTGTTTT+AGG | - | chr1.1:71870345-71870364 | None:intergenic | 40.0% |
| !! | ACAGTGTTGGGGTTGTTTTA+GGG | - | chr1.1:71870344-71870363 | None:intergenic | 40.0% |
| !! | CATGTTTGTCCATGATGGAT+TGG | + | chr1.1:71871647-71871666 | MS.gene006240:CDS | 40.0% |
| !! | TAGCTTTGGTGTTACCTCTA+TGG | + | chr1.1:71870602-71870621 | MS.gene006240:CDS | 40.0% |
| !!! | TGGACTCTTTTTAGGACCAA+AGG | + | chr1.1:71871937-71871956 | MS.gene006240:CDS | 40.0% |
| AGCAGCAACTCTTGTGAAGT+AGG | - | chr1.1:71871712-71871731 | None:intergenic | 45.0% | |
| AGGAAGTTGAAGAAGTGGGA+GGG | + | chr1.1:71872351-71872370 | MS.gene006240:intron | 45.0% | |
| AGTGTGCTCGTAGCCAAATT+TGG | + | chr1.1:71872279-71872298 | MS.gene006240:intron | 45.0% | |
| ATGTGAATGTGGCTGACCTT+TGG | - | chr1.1:71871956-71871975 | None:intergenic | 45.0% | |
| ATTGTAGGGCTTCAAGGTTG+TGG | - | chr1.1:71870292-71870311 | None:intergenic | 45.0% | |
| CACATTGCTTGGCTGACATA+TGG | + | chr1.1:71872325-71872344 | MS.gene006240:intron | 45.0% | |
| CCCCTTTGAATTTGTCCGAA+TGG | - | chr1.1:71871910-71871929 | None:intergenic | 45.0% | |
| GCAGCAACTCTTGTGAAGTA+GGG | - | chr1.1:71871711-71871730 | None:intergenic | 45.0% | |
| GCCTACATGTTTGTCCATGA+TGG | + | chr1.1:71871642-71871661 | MS.gene006240:CDS | 45.0% | |
| GGTCTTGGAATTACGGTGTT+TGG | + | chr1.1:71871615-71871634 | MS.gene006240:CDS | 45.0% | |
| GGTTCATAAGAGATTCCCTG+TGG | + | chr1.1:71871668-71871687 | MS.gene006240:CDS | 45.0% | |
| GTGCAGGAAGTTGAAGAAGT+GGG | + | chr1.1:71872347-71872366 | MS.gene006240:intron | 45.0% | |
| GTGCCAAACATTTCAGACCA+AGG | - | chr1.1:71870901-71870920 | None:intergenic | 45.0% | |
| TCACATCATCGACCAAGAGA+GGG | + | chr1.1:71871326-71871345 | MS.gene006240:CDS | 45.0% | |
| TGAGGGCTGTGTTTACTGTT+AGG | - | chr1.1:71870510-71870529 | None:intergenic | 45.0% | |
| TGGGAAGACTGGTGAAGAAT+CGG | - | chr1.1:71871115-71871134 | None:intergenic | 45.0% | |
| TTGTTTGCAGCTCCACCATT+CGG | + | chr1.1:71871892-71871911 | MS.gene006240:intron | 45.0% | |
| ! | ATGACGGAAACCTCTTAAGG+GGG | - | chr1.1:71870373-71870392 | None:intergenic | 45.0% |
| ! | GCAGCTGTAATGTCTAGCTT+TGG | + | chr1.1:71870588-71870607 | MS.gene006240:CDS | 45.0% |
| ! | GCTATGACGGAAACCTCTTA+AGG | - | chr1.1:71870376-71870395 | None:intergenic | 45.0% |
| ! | TTTAACAAGGGATTGGTGCC+TGG | + | chr1.1:71871422-71871441 | MS.gene006240:CDS | 45.0% |
| !! | GGGATCTAATTTGGTGCCTT+TGG | + | chr1.1:71871860-71871879 | MS.gene006240:intron | 45.0% |
| !! | TGTATGATAGGGTAGTGGAG+AGG | + | chr1.1:71870873-71870892 | MS.gene006240:intron | 45.0% |
| !!! | CAGTGTTGGGGTTGTTTTAG+GGG | - | chr1.1:71870343-71870362 | None:intergenic | 45.0% |
| !!! | TTGGGGTTGTTTTAGGGGAA+GGG | - | chr1.1:71870338-71870357 | None:intergenic | 45.0% |
| AAGGGGAAGAAGTTGAGGGT+TGG | - | chr1.1:71870320-71870339 | None:intergenic | 50.0% | |
| AAGGGGGTGAAGAACAGTGT+TGG | - | chr1.1:71870357-71870376 | None:intergenic | 50.0% | |
| AAGTAGGGCACGTTGGCAAT+GGG | - | chr1.1:71871696-71871715 | None:intergenic | 50.0% | |
| AGCTCAAATGGTCCCTCTCT+TGG | - | chr1.1:71871341-71871360 | None:intergenic | 50.0% | |
| AGGGGGTGAAGAACAGTGTT+GGG | - | chr1.1:71870356-71870375 | None:intergenic | 50.0% | |
| CAGGAAGTTGAAGAAGTGGG+AGG | + | chr1.1:71872350-71872369 | MS.gene006240:intron | 50.0% | |
| CTGTTCTTCACCCCCTTAAG+AGG | + | chr1.1:71870360-71870379 | MS.gene006240:CDS | 50.0% | |
| GAGGAGATTGTAGGGCTTCA+AGG | - | chr1.1:71870298-71870317 | None:intergenic | 50.0% | |
| GAGGGTTGGAGGAGATTGTA+GGG | - | chr1.1:71870306-71870325 | None:intergenic | 50.0% | |
| GGGCTGTGTTTACTGTTAGG+AGG | - | chr1.1:71870507-71870526 | None:intergenic | 50.0% | |
| GGTGCAGGAAGTTGAAGAAG+TGG | + | chr1.1:71872346-71872365 | MS.gene006240:intron | 50.0% | |
| GTCACATCATCGACCAAGAG+AGG | + | chr1.1:71871325-71871344 | MS.gene006240:intron | 50.0% | |
| TACAGCAGCACCAACTGAGA+GGG | - | chr1.1:71870929-71870948 | None:intergenic | 50.0% | |
| TCTTGTGAAGTAGGGCACGT+TGG | - | chr1.1:71871703-71871722 | None:intergenic | 50.0% | |
| TGAGGGTTGGAGGAGATTGT+AGG | - | chr1.1:71870307-71870326 | None:intergenic | 50.0% | |
| TTACAGCAGCACCAACTGAG+AGG | - | chr1.1:71870930-71870949 | None:intergenic | 50.0% | |
| TTCTATGGCATGCTTCCCTG+TGG | + | chr1.1:71871069-71871088 | MS.gene006240:CDS | 50.0% | |
| ! | GATGGGCTCATGAGGTTCTA+TGG | + | chr1.1:71871054-71871073 | MS.gene006240:CDS | 50.0% |
| !!! | GTTGGGGTTGTTTTAGGGGA+AGG | - | chr1.1:71870339-71870358 | None:intergenic | 50.0% |
| !!! | TGGGGTTGTTTTAGGGGAAG+GGG | - | chr1.1:71870337-71870356 | None:intergenic | 50.0% |
| ACTGCACCAAAGCAGAGACC+AGG | - | chr1.1:71871443-71871462 | None:intergenic | 55.0% | |
| AGACCTCATGCATGTGCCAC+AGG | - | chr1.1:71871088-71871107 | None:intergenic | 55.0% | |
| AGGGGAAGGGGAAGAAGTTG+AGG | - | chr1.1:71870325-71870344 | None:intergenic | 55.0% | |
| GAAGTAGGGCACGTTGGCAA+TGG | - | chr1.1:71871697-71871716 | None:intergenic | 55.0% | |
| GACCTCATGCATGTGCCACA+GGG | - | chr1.1:71871087-71871106 | None:intergenic | 55.0% | |
| GCTTGGCTGACATATGGTGC+AGG | + | chr1.1:71872331-71872350 | MS.gene006240:intron | 55.0% | |
| GGCACATTTGCCCTCTCAGT+TGG | + | chr1.1:71870916-71870935 | MS.gene006240:CDS | 55.0% | |
| GGGAAGAAGTTGAGGGTTGG+AGG | - | chr1.1:71870317-71870336 | None:intergenic | 55.0% | |
| GGGGAAGGGGAAGAAGTTGA+GGG | - | chr1.1:71870324-71870343 | None:intergenic | 55.0% | |
| GGGGGTGAAGAACAGTGTTG+GGG | - | chr1.1:71870355-71870374 | None:intergenic | 55.0% | |
| GTAGGGCTTCAAGGTTGTGG+CGG | - | chr1.1:71870289-71870308 | None:intergenic | 55.0% | |
| TTCCCTGTGGCACATGCATG+AGG | + | chr1.1:71871082-71871101 | MS.gene006240:CDS | 55.0% | |
| ! | TTGGGCTAGATGGGCTCATG+AGG | + | chr1.1:71871046-71871065 | MS.gene006240:CDS | 55.0% |
| ! | TTGGTGCCTGGTCTCTGCTT+TGG | + | chr1.1:71871434-71871453 | MS.gene006240:CDS | 55.0% |
| !! | AGGGTAGTGGAGAGGTTCCT+TGG | + | chr1.1:71870881-71870900 | MS.gene006240:intron | 55.0% |
| ACGTTGGCAATGGGACCCAC+AGG | - | chr1.1:71871687-71871706 | None:intergenic | 60.0% | |
| CGTTGGCAATGGGACCCACA+GGG | - | chr1.1:71871686-71871705 | None:intergenic | 60.0% | |
| GGGCTTCAAGGTTGTGGCGG+TGG | - | chr1.1:71870286-71870305 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 71870267 | 71872430 | 71870267 | ID=MS.gene006240 |
| chr1.1 | mRNA | 71870267 | 71872430 | 71870267 | ID=MS.gene006240.t1;Parent=MS.gene006240 |
| chr1.1 | exon | 71870267 | 71870665 | 71870267 | ID=MS.gene006240.t1.exon1;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71870267 | 71870665 | 71870267 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| chr1.1 | exon | 71870883 | 71870945 | 71870883 | ID=MS.gene006240.t1.exon2;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71870883 | 71870945 | 71870883 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| chr1.1 | exon | 71871032 | 71871103 | 71871032 | ID=MS.gene006240.t1.exon3;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71871032 | 71871103 | 71871032 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| chr1.1 | exon | 71871326 | 71871460 | 71871326 | ID=MS.gene006240.t1.exon4;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71871326 | 71871460 | 71871326 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| chr1.1 | exon | 71871615 | 71871740 | 71871615 | ID=MS.gene006240.t1.exon5;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71871615 | 71871740 | 71871615 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| chr1.1 | exon | 71871902 | 71871958 | 71871902 | ID=MS.gene006240.t1.exon6;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71871902 | 71871958 | 71871902 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| chr1.1 | exon | 71872353 | 71872430 | 71872353 | ID=MS.gene006240.t1.exon7;Parent=MS.gene006240.t1 |
| chr1.1 | CDS | 71872353 | 71872430 | 71872353 | ID=cds.MS.gene006240.t1;Parent=MS.gene006240.t1 |
| Gene Sequence |
| Protein sequence |
