Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36168.t1 | XP_003622555.1 | 97.2 | 616 | 17 | 0 | 1 | 616 | 1 | 616 | 0.00E+00 | 1258.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36168.t1 | Q7XJM2 | 64.0 | 559 | 188 | 4 | 72 | 617 | 60 | 618 | 6.0e-226 | 785.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36168.t1 | G7KU00 | 97.2 | 616 | 17 | 0 | 1 | 616 | 1 | 616 | 0.0e+00 | 1258.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene36168 | MS.gene49146 | PPI |
MS.gene36168 | MS.gene061134 | PPI |
MS.gene006240 | MS.gene36168 | PPI |
MS.gene60605 | MS.gene36168 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36168.t1 | MTR_7g045370 | 97.240 | 616 | 17 | 0 | 1 | 616 | 1 | 616 | 0.0 | 1256 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36168.t1 | AT2G44990 | 60.130 | 617 | 225 | 6 | 14 | 617 | 14 | 622 | 0.0 | 768 |
MS.gene36168.t1 | AT2G44990 | 60.130 | 617 | 225 | 6 | 14 | 617 | 10 | 618 | 0.0 | 768 |
MS.gene36168.t1 | AT2G44990 | 59.699 | 598 | 220 | 6 | 14 | 598 | 14 | 603 | 0.0 | 734 |
MS.gene36168.t1 | AT3G24220 | 21.965 | 519 | 283 | 17 | 123 | 616 | 147 | 568 | 9.91e-20 | 93.6 |
Find 152 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTAGGCTTTCATGGTTTA+TGG | 0.075483 | 7.1:+54896326 | MS.gene36168:CDS |
TGATTTCTTCCATTTATTTA+TGG | 0.124046 | 7.1:-54895811 | None:intergenic |
CCACCCTTCAATACCGAAAA+TGG | 0.185139 | 7.1:-54885512 | None:intergenic |
TAAACAAGCTCATGGGAATT+TGG | 0.204838 | 7.1:+54888441 | MS.gene36168:CDS |
GATTTCTTCCATTTATTTAT+GGG | 0.214626 | 7.1:-54895810 | None:intergenic |
TTCAACTTCCGCAAGTTATT+TGG | 0.222731 | 7.1:+54888502 | MS.gene36168:CDS |
ATCATCTTCTTCTTCACCTT+TGG | 0.263023 | 7.1:-54896030 | None:intergenic |
CCTTTGACATTCATTATTGA+TGG | 0.273300 | 7.1:-54888856 | None:intergenic |
AAACCTAGGTAGTAAGTATA+TGG | 0.285943 | 7.1:-54888323 | None:intergenic |
TCTAGGCTTTCATGGTTTAT+GGG | 0.294341 | 7.1:+54896327 | MS.gene36168:CDS |
TGGGCTTCACATCACATTCT+TGG | 0.321693 | 7.1:-54895791 | None:intergenic |
GGGTCATCATGCTCTATAAA+AGG | 0.327515 | 7.1:-54885170 | None:intergenic |
TCAAGTACATGTAGTTTGAT+AGG | 0.341607 | 7.1:-54885254 | None:intergenic |
ATAGGCGTGGATATTGGTTT+TGG | 0.345537 | 7.1:-54885098 | None:intergenic |
GGTGATGTTTGGGAGGTTGC+TGG | 0.350337 | 7.1:+54885725 | MS.gene36168:CDS |
TCATCTTCTTCTTCACCTTT+GGG | 0.354453 | 7.1:-54896029 | None:intergenic |
CACCACCGTGATTCACATTA+TGG | 0.360768 | 7.1:-54885706 | None:intergenic |
GGGTACTACAACGTCGGTAT+TGG | 0.363950 | 7.1:-54885123 | None:intergenic |
TAAACAAATTTCAGGATCAA+TGG | 0.366103 | 7.1:+54888234 | MS.gene36168:intron |
TGCGTTGCCACATCTTGTTC+AGG | 0.374264 | 7.1:+54888885 | MS.gene36168:CDS |
TATCGAAAGTGAATGCTCTT+AGG | 0.376196 | 7.1:-54885385 | None:intergenic |
CATGGTGGACGGTTGTGATA+TGG | 0.380147 | 7.1:+54885679 | MS.gene36168:CDS |
GGTACTACAACGTCGGTATT+GGG | 0.386976 | 7.1:-54885122 | None:intergenic |
AAAAGAGATAGGAACCAAAA+AGG | 0.390801 | 7.1:+54896261 | MS.gene36168:CDS |
ACTGTTAGTGCTGATATCAT+TGG | 0.390986 | 7.1:-54888277 | None:intergenic |
GTAGTCCCATGAAGCAACTA+TGG | 0.393761 | 7.1:-54885192 | None:intergenic |
ATGTGAAGCCCATAAATAAA+TGG | 0.394130 | 7.1:+54895802 | MS.gene36168:CDS |
TTTGGTTATTGTTTGGGGTA+AGG | 0.398017 | 7.1:-54885075 | None:intergenic |
TAGTGAGACAAGAGTCTCTT+TGG | 0.400178 | 7.1:-54887111 | None:intergenic |
CTTGTTCATGTCACAAAGAT+CGG | 0.400816 | 7.1:+54885220 | MS.gene36168:CDS |
TGAATCACGGTGGTGATGTT+TGG | 0.402577 | 7.1:+54885714 | MS.gene36168:CDS |
TTGGGTATAGGCGTGGATAT+TGG | 0.407425 | 7.1:-54885104 | None:intergenic |
ATCACTTGATGATCCATGAT+TGG | 0.412199 | 7.1:+54887602 | MS.gene36168:CDS |
GGTAAGGAGGCTTGGTGCAC+CGG | 0.415528 | 7.1:-54885059 | None:intergenic |
TCCGGTGCATACTATTTAAC+CGG | 0.416542 | 7.1:+54885302 | MS.gene36168:CDS |
AGAGGAAAATTTAAGTGCAT+TGG | 0.419853 | 7.1:-54896307 | None:intergenic |
ATCTCCATGAGTTCGTCTTT+CGG | 0.420151 | 7.1:-54885475 | None:intergenic |
AAACAAATTTCAGGATCAAT+GGG | 0.421433 | 7.1:+54888235 | MS.gene36168:intron |
TGCTCTATAAAAGGTTGAAC+CGG | 0.429963 | 7.1:-54885161 | None:intergenic |
GAAAATGCAGGATTGGTTGC+TGG | 0.433568 | 7.1:-54895843 | None:intergenic |
CTCTATGCTGCAACCACCTT+AGG | 0.436424 | 7.1:+54895885 | MS.gene36168:CDS |
ACAAAATTCCTCCTCTCATA+AGG | 0.436733 | 7.1:+54885030 | MS.gene36168:CDS |
ATGGGTGATGTACTCTTACT+TGG | 0.438194 | 7.1:-54888304 | None:intergenic |
CGCATAAAGCTTGATGTACT+AGG | 0.439279 | 7.1:+54887661 | MS.gene36168:CDS |
TTGTTTGGGGTAAGGAGGCT+TGG | 0.441637 | 7.1:-54885067 | None:intergenic |
ATGACCCCATAGTTGCTTCA+TGG | 0.442980 | 7.1:+54885186 | MS.gene36168:CDS |
TCATGGATCATCAAGTGATC+TGG | 0.447297 | 7.1:-54887598 | None:intergenic |
ACAACGTCGGTATTGGGTAT+AGG | 0.449430 | 7.1:-54885116 | None:intergenic |
TGAGGGGTTGTGAATGGGCT+TGG | 0.449965 | 7.1:-54885003 | None:intergenic |
TCACTTGATGATCCATGATT+GGG | 0.457034 | 7.1:+54887603 | MS.gene36168:CDS |
TACATCAAGCTTTATGCGAT+TGG | 0.457811 | 7.1:-54887656 | None:intergenic |
TAATACGTACCATACAATAT+AGG | 0.457955 | 7.1:-54885761 | None:intergenic |
GAATCACGGTGGTGATGTTT+GGG | 0.458972 | 7.1:+54885715 | MS.gene36168:CDS |
ATCAAACTACATGTACTTGA+AGG | 0.462926 | 7.1:+54885257 | MS.gene36168:CDS |
ATGAGCTTGTTTAACTTCAA+AGG | 0.467465 | 7.1:-54888431 | None:intergenic |
GAGGCTTGGTGCACCGGAGG+AGG | 0.472926 | 7.1:-54885053 | None:intergenic |
GGTTATTGTTTGGGGTAAGG+AGG | 0.478637 | 7.1:-54885072 | None:intergenic |
ACCCGATCGGATTCTACAAC+CGG | 0.480647 | 7.1:+54885142 | MS.gene36168:CDS |
GTATGCACCGGATGGAAAAT+CGG | 0.481570 | 7.1:-54885291 | None:intergenic |
TTACTAAAGCCTATATTGTA+TGG | 0.483431 | 7.1:+54885752 | MS.gene36168:CDS |
ATACTCCTCGACTTGAGCTT+CGG | 0.485423 | 7.1:-54885450 | None:intergenic |
CTTGCCAGAAAATGCAGGAT+TGG | 0.488495 | 7.1:-54895850 | None:intergenic |
TAAGATGAGGGGTTGTGAAT+GGG | 0.494670 | 7.1:-54885008 | None:intergenic |
TATCAGTGAAAGCCCAATCA+TGG | 0.499024 | 7.1:-54887615 | None:intergenic |
GTAAGATGAGGGGTTGTGAA+TGG | 0.501000 | 7.1:-54885009 | None:intergenic |
TCGGGTACGTTGGATACGAT+TGG | 0.501181 | 7.1:+54885647 | MS.gene36168:CDS |
ATCCATGAAAATCCCCGGTC+CGG | 0.503130 | 7.1:-54885321 | None:intergenic |
TTTGAAGTTAAACAAGCTCA+TGG | 0.503613 | 7.1:+54888433 | MS.gene36168:CDS |
GGATCAATGGGAGCAGTATG+TGG | 0.503916 | 7.1:+54888247 | MS.gene36168:intron |
GGAAGAAGCTATTGTGTATG+TGG | 0.504761 | 7.1:+54885597 | MS.gene36168:CDS |
CATGGATGATCATGGTTCCA+CGG | 0.509805 | 7.1:+54885337 | MS.gene36168:CDS |
CGGGTACGTTGGATACGATT+GGG | 0.510178 | 7.1:+54885648 | MS.gene36168:CDS |
TTTGGTTTGGTTATTGTTTG+GGG | 0.512825 | 7.1:-54885080 | None:intergenic |
AACCCGTATGAGATCGAATC+GGG | 0.515275 | 7.1:+54885629 | MS.gene36168:CDS |
CTAATACTAGTGTGTTGATG+TGG | 0.516483 | 7.1:+54885573 | MS.gene36168:CDS |
GCTGGAAGTAGAAAATTTGT+TGG | 0.519058 | 7.1:+54895990 | MS.gene36168:CDS |
ATCTTGAATCCAAAAGAGAT+AGG | 0.519346 | 7.1:+54896250 | MS.gene36168:CDS |
TCCTCTCATAAGGCCTCCTC+CGG | 0.520815 | 7.1:+54885040 | MS.gene36168:CDS |
ACTTGCGGAAGTTGAACCAT+TGG | 0.522672 | 7.1:-54888495 | None:intergenic |
TGCATACTATTTAACCGGAC+CGG | 0.522878 | 7.1:+54885307 | MS.gene36168:CDS |
GGTATCCATGGCCGTCTAGC+GGG | 0.523298 | 7.1:-54885364 | None:intergenic |
GCATACTATTTAACCGGACC+GGG | 0.527393 | 7.1:+54885308 | MS.gene36168:CDS |
TAGTCCCATGAAGCAACTAT+GGG | 0.527852 | 7.1:-54885191 | None:intergenic |
AATTTCACCACAGTGTCAAA+AGG | 0.529564 | 7.1:-54895933 | None:intergenic |
ACAGTGTCAAAAGGAAAACT+TGG | 0.532181 | 7.1:-54895924 | None:intergenic |
ACTACAAGGTTGATTCTAGC+AGG | 0.536833 | 7.1:+54887130 | MS.gene36168:CDS |
AACCTAGGTAGTAAGTATAT+GGG | 0.537049 | 7.1:-54888322 | None:intergenic |
TCAGGTTTGTTTGGAAACCT+AGG | 0.541341 | 7.1:-54888337 | None:intergenic |
TCCACGGTGCACCCGCTAGA+CGG | 0.542344 | 7.1:+54885353 | MS.gene36168:CDS |
GAGACTCTTGTCTCACTACA+AGG | 0.544901 | 7.1:+54887116 | MS.gene36168:CDS |
CTAGTGCTTGCTCTTACCAA+TGG | 0.550159 | 7.1:+54888479 | MS.gene36168:CDS |
GTTAAATAGTATGCACCGGA+TGG | 0.550406 | 7.1:-54885299 | None:intergenic |
ACCGGTTGTAGAATCCGATC+GGG | 0.550878 | 7.1:-54885143 | None:intergenic |
TGACCCCATAGTTGCTTCAT+GGG | 0.553913 | 7.1:+54885187 | MS.gene36168:CDS |
AAGGAGGCTTGGTGCACCGG+AGG | 0.556369 | 7.1:-54885056 | None:intergenic |
GTAAACGTAAAATTACTTCG+TGG | 0.558120 | 7.1:-54887198 | None:intergenic |
AAACCCGTATGAGATCGAAT+CGG | 0.561013 | 7.1:+54885628 | MS.gene36168:CDS |
ATGACCGAAAGACGAACTCA+TGG | 0.563355 | 7.1:+54885471 | MS.gene36168:CDS |
TGGTTACCTTCTTGTTGTTG+AGG | 0.564215 | 7.1:+54896052 | MS.gene36168:CDS |
GATCAATGGGAGCAGTATGT+GGG | 0.566595 | 7.1:+54888248 | MS.gene36168:CDS |
GACTAATGAAGTCAAATACA+TGG | 0.568756 | 7.1:+54885412 | MS.gene36168:CDS |
TACCCGATTCGATCTCATAC+GGG | 0.575659 | 7.1:-54885631 | None:intergenic |
TGAATGCTCTTAGGTATCCA+TGG | 0.578641 | 7.1:-54885376 | None:intergenic |
AACCGGTTGTAGAATCCGAT+CGG | 0.578812 | 7.1:-54885144 | None:intergenic |
TTGAAGTTAAACAAGCTCAT+GGG | 0.579150 | 7.1:+54888434 | MS.gene36168:CDS |
TGAGATCGAATCGGGTACGT+TGG | 0.583694 | 7.1:+54885637 | MS.gene36168:CDS |
TGAGACAAGAGTCTCTTTGG+TGG | 0.585597 | 7.1:-54887108 | None:intergenic |
GTATGACTCTAATTTCAAGT+TGG | 0.586716 | 7.1:+54887552 | MS.gene36168:CDS |
TAATACTAGTGTGTTGATGT+GGG | 0.588209 | 7.1:+54885574 | MS.gene36168:CDS |
GTGCACCCGCTAGACGGCCA+TGG | 0.588244 | 7.1:+54885359 | MS.gene36168:CDS |
GCACCGGATGGAAAATCGGT+TGG | 0.589999 | 7.1:-54885287 | None:intergenic |
GTTTATGGGCAGCAAACTGA+AGG | 0.591330 | 7.1:+54896341 | MS.gene36168:CDS |
TCCGGTTAAATAGTATGCAC+CGG | 0.592419 | 7.1:-54885303 | None:intergenic |
AAAGGTGAAGAAGAAGATGA+TGG | 0.592711 | 7.1:+54896032 | MS.gene36168:CDS |
TGATCATCCATGAAAATCCC+CGG | 0.594300 | 7.1:-54885326 | None:intergenic |
CTATTGTGTATGTGGGAAGG+TGG | 0.594646 | 7.1:+54885605 | MS.gene36168:CDS |
AGGTATCCATGGCCGTCTAG+CGG | 0.597533 | 7.1:-54885365 | None:intergenic |
GAAGAAGCTATTGTGTATGT+GGG | 0.599334 | 7.1:+54885598 | MS.gene36168:CDS |
GGGAAGTTCAACATGGTGGA+CGG | 0.599457 | 7.1:+54885668 | MS.gene36168:CDS |
GTCGGTATTGGGTATAGGCG+TGG | 0.600250 | 7.1:-54885111 | None:intergenic |
GTACCCGATTCGATCTCATA+CGG | 0.600531 | 7.1:-54885632 | None:intergenic |
CACCCATATACTTACTACCT+AGG | 0.603830 | 7.1:+54888320 | MS.gene36168:CDS |
GAATTTCAAGTCTAGCAACA+AGG | 0.607670 | 7.1:-54896285 | None:intergenic |
GCCGTCTAGCGGGTGCACCG+TGG | 0.608033 | 7.1:-54885354 | None:intergenic |
TGAAGCAACCACAGTTGTGA+AGG | 0.608774 | 7.1:-54888397 | None:intergenic |
CAACTGTGGTTGCTTCATGT+TGG | 0.613135 | 7.1:+54888403 | MS.gene36168:CDS |
CCATCAATAATGAATGTCAA+AGG | 0.613364 | 7.1:+54888856 | MS.gene36168:CDS |
CCGATCGGGTACTACAACGT+CGG | 0.615762 | 7.1:-54885129 | None:intergenic |
AAGACAACATCTCTGCATTG+AGG | 0.622591 | 7.1:-54896224 | None:intergenic |
TGAATTACCTGAACAAGATG+TGG | 0.624366 | 7.1:-54888892 | None:intergenic |
TACTTACCTCAACAACAAGA+AGG | 0.624557 | 7.1:-54896058 | None:intergenic |
TCATGGAGATTTACACATAG+AGG | 0.631059 | 7.1:+54885488 | MS.gene36168:CDS |
AGTTGTGAAGGTACTTCAAG+TGG | 0.631350 | 7.1:-54888385 | None:intergenic |
AATTTCAAGTCTAGCAACAA+GGG | 0.640461 | 7.1:-54896284 | None:intergenic |
TATACATACCAAATAACTTG+CGG | 0.644281 | 7.1:-54888510 | None:intergenic |
TTGAAGTACCTTCACAACTG+TGG | 0.646179 | 7.1:+54888389 | MS.gene36168:CDS |
ACCGGAGGAGGCCTTATGAG+AGG | 0.656216 | 7.1:-54885041 | None:intergenic |
GGAGGAGGCCTTATGAGAGG+AGG | 0.657060 | 7.1:-54885038 | None:intergenic |
TCACGGTGGTGATGTTTGGG+AGG | 0.659058 | 7.1:+54885718 | MS.gene36168:CDS |
ATCAATGGGAGCAGTATGTG+GGG | 0.664465 | 7.1:+54888249 | MS.gene36168:CDS |
AAGCTATTGTGTATGTGGGA+AGG | 0.665116 | 7.1:+54885602 | MS.gene36168:CDS |
ATACTAGTGTGTTGATGTGG+GGG | 0.668555 | 7.1:+54885576 | MS.gene36168:CDS |
TACGATTGGGAAGTTCAACA+TGG | 0.674882 | 7.1:+54885661 | MS.gene36168:CDS |
CCGACGTTGTAGTACCCGAT+CGG | 0.675830 | 7.1:+54885129 | MS.gene36168:CDS |
CATACTATTTAACCGGACCG+GGG | 0.677916 | 7.1:+54885309 | MS.gene36168:CDS |
AATACTAGTGTGTTGATGTG+GGG | 0.682220 | 7.1:+54885575 | MS.gene36168:CDS |
TAAGACCGAAGCTCAAGTCG+AGG | 0.691285 | 7.1:+54885445 | MS.gene36168:CDS |
GATGACCATAATGTGAATCA+CGG | 0.706155 | 7.1:+54885701 | MS.gene36168:CDS |
CATAAACCATGAAAGCCTAG+AGG | 0.712710 | 7.1:-54896325 | None:intergenic |
AGTCCCATGAAGCAACTATG+GGG | 0.723727 | 7.1:-54885190 | None:intergenic |
GATTGGGAAGTTCAACATGG+TGG | 0.741134 | 7.1:+54885664 | MS.gene36168:CDS |
GACCATAATGTGAATCACGG+TGG | 0.827660 | 7.1:+54885704 | MS.gene36168:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 54884996 | 54896360 | 54884996 | ID=MS.gene36168 |
chr7.1 | mRNA | 54884996 | 54896360 | 54884996 | ID=MS.gene36168.t1;Parent=MS.gene36168 |
chr7.1 | exon | 54884996 | 54885773 | 54884996 | ID=MS.gene36168.t1.exon1;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54884996 | 54885773 | 54884996 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
chr7.1 | exon | 54887094 | 54887222 | 54887094 | ID=MS.gene36168.t1.exon2;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54887094 | 54887222 | 54887094 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
chr7.1 | exon | 54887551 | 54887682 | 54887551 | ID=MS.gene36168.t1.exon3;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54887551 | 54887682 | 54887551 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
chr7.1 | exon | 54888248 | 54888523 | 54888248 | ID=MS.gene36168.t1.exon4;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54888248 | 54888523 | 54888248 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
chr7.1 | exon | 54888827 | 54888906 | 54888827 | ID=MS.gene36168.t1.exon5;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54888827 | 54888906 | 54888827 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
chr7.1 | exon | 54895759 | 54896073 | 54895759 | ID=MS.gene36168.t1.exon6;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54895759 | 54896073 | 54895759 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
chr7.1 | exon | 54896217 | 54896360 | 54896217 | ID=MS.gene36168.t1.exon7;Parent=MS.gene36168.t1 |
chr7.1 | CDS | 54896217 | 54896360 | 54896217 | ID=cds.MS.gene36168.t1;Parent=MS.gene36168.t1 |
Gene Sequence |
Protein sequence |