Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006275.t1 | XP_013469655.1 | 96.9 | 446 | 6 | 1 | 1 | 438 | 1 | 446 | 2.70E-248 | 867.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006275.t1 | Q91WC9 | 27.4 | 164 | 89 | 6 | 96 | 241 | 357 | 508 | 6.8e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006275.t1 | A0A072VQH8 | 96.9 | 446 | 6 | 1 | 1 | 438 | 1 | 446 | 2.0e-248 | 867.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019630 | MS.gene006275 | PPI |
| MS.gene019628 | MS.gene006275 | PPI |
| MS.gene056779 | MS.gene006275 | PPI |
| MS.gene066422 | MS.gene006275 | PPI |
| MS.gene066420 | MS.gene006275 | PPI |
| MS.gene066419 | MS.gene006275 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006275.t1 | MTR_1g100950 | 96.861 | 446 | 6 | 1 | 1 | 438 | 41 | 486 | 0.0 | 897 |
| MS.gene006275.t1 | MTR_1g100950 | 96.861 | 446 | 6 | 1 | 1 | 438 | 1 | 446 | 0.0 | 896 |
| MS.gene006275.t1 | MTR_1g100950 | 95.389 | 347 | 8 | 1 | 1 | 339 | 1 | 347 | 0.0 | 686 |
| MS.gene006275.t1 | MTR_8g030890 | 66.815 | 449 | 134 | 6 | 1 | 438 | 1 | 445 | 0.0 | 606 |
| MS.gene006275.t1 | MTR_3g065480 | 57.111 | 443 | 174 | 5 | 1 | 430 | 1 | 440 | 0.0 | 521 |
| MS.gene006275.t1 | MTR_1g100950 | 91.935 | 248 | 16 | 1 | 1 | 248 | 1 | 244 | 4.89e-169 | 474 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene006275.t1 | AT3G49050 | 70.339 | 472 | 106 | 5 | 1 | 438 | 1 | 472 | 0.0 | 674 |
| MS.gene006275.t1 | AT4G00500 | 62.138 | 449 | 156 | 5 | 1 | 437 | 1 | 447 | 0.0 | 558 |
| MS.gene006275.t1 | AT4G00500 | 62.138 | 449 | 156 | 5 | 1 | 437 | 1 | 447 | 0.0 | 558 |
| MS.gene006275.t1 | AT5G37710 | 56.376 | 447 | 170 | 6 | 1 | 437 | 1 | 432 | 2.12e-176 | 500 |
| MS.gene006275.t1 | AT5G37710 | 64.183 | 349 | 112 | 4 | 1 | 339 | 1 | 346 | 1.76e-161 | 459 |
Find 116 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCTGTTGGATAATAAATT+AGG | 0.146068 | 1.1:-72198637 | MS.gene006275:CDS |
| CGTCAGATCATGCCATTATT+TGG | 0.173210 | 1.1:-72197195 | MS.gene006275:CDS |
| CGCTGCATGATTTGCTTTAC+AGG | 0.173921 | 1.1:+72196130 | None:intergenic |
| GTAATGCAGCTTTGTATTCT+TGG | 0.174372 | 1.1:+72196083 | None:intergenic |
| TTGTTGAGAGAAAGCCTTTC+AGG | 0.219282 | 1.1:-72197500 | MS.gene006275:intron |
| AATTATACTCTTACATTTGC+TGG | 0.240349 | 1.1:-72198505 | MS.gene006275:CDS |
| CTGATATAGTTCTTGCTATA+AGG | 0.241938 | 1.1:-72198693 | MS.gene006275:CDS |
| TAGATGTATGTCGCTTAATT+TGG | 0.247337 | 1.1:-72198368 | MS.gene006275:CDS |
| ACGATCTTCGGAACCCTCTT+TGG | 0.259036 | 1.1:-72198828 | MS.gene006275:CDS |
| GCAAATGTAAGAGTATAATT+TGG | 0.291177 | 1.1:+72198508 | None:intergenic |
| TGTTCACAATGGGCTGTTAA+AGG | 0.304854 | 1.1:-72198590 | MS.gene006275:CDS |
| CTTCTGTTAGTTCAACTAAT+AGG | 0.307521 | 1.1:-72195958 | MS.gene006275:CDS |
| TTTACGCCACCATCAGAATA+TGG | 0.317987 | 1.1:-72196028 | MS.gene006275:CDS |
| TGCTATAAGGGGACTAAATC+TGG | 0.319987 | 1.1:-72198680 | MS.gene006275:CDS |
| TTTCTAAGTAATAACCAATC+AGG | 0.324026 | 1.1:+72198778 | None:intergenic |
| ATTGTTTAGCTTGCGCTCGT+TGG | 0.340664 | 1.1:-72198969 | MS.gene006275:CDS |
| CTCTTTCTCTATCCAAATAA+TGG | 0.346939 | 1.1:+72197183 | None:intergenic |
| AACCCTCTTTGGGCGCCTCC+TGG | 0.352249 | 1.1:-72198817 | MS.gene006275:CDS |
| TGATCAAGATACAATATATA+TGG | 0.354509 | 1.1:+72198724 | None:intergenic |
| TGCCATGCTTATTGTGCTTA+AGG | 0.358859 | 1.1:-72197605 | MS.gene006275:CDS |
| CGATCTTCGGAACCCTCTTT+GGG | 0.364296 | 1.1:-72198827 | MS.gene006275:CDS |
| TTCTGTTGGATAATAAATTA+GGG | 0.368729 | 1.1:-72198636 | MS.gene006275:CDS |
| ATATTGAGAGGAAGAGAGTT+AGG | 0.369624 | 1.1:-72198411 | MS.gene006275:CDS |
| GGCACTGCTGTTCTCACAAC+TGG | 0.373000 | 1.1:+72197262 | None:intergenic |
| ACTTACATCCAAAGCCCTTT+GGG | 0.382582 | 1.1:+72197159 | None:intergenic |
| GACTTACATCCAAAGCCCTT+TGG | 0.385089 | 1.1:+72197158 | None:intergenic |
| TGATATAGTTCTTGCTATAA+GGG | 0.394351 | 1.1:-72198692 | MS.gene006275:CDS |
| TTGTTTAGCTTGCGCTCGTT+GGG | 0.398289 | 1.1:-72198968 | MS.gene006275:CDS |
| GAAAGAGGCCCAAAGGGCTT+TGG | 0.400956 | 1.1:-72197167 | MS.gene006275:CDS |
| ACATTTGCTGGACATTCCCT+TGG | 0.407940 | 1.1:-72198493 | MS.gene006275:CDS |
| AGAACAGCAGTGCCAGTAGA+TGG | 0.408642 | 1.1:-72197253 | MS.gene006275:CDS |
| CAGGGCATGACAGTGAAACT+TGG | 0.415218 | 1.1:-72198921 | MS.gene006275:CDS |
| GCTGGACATTCCCTTGGATC+AGG | 0.417188 | 1.1:-72198487 | MS.gene006275:CDS |
| AGGAAGGAGAGGAGAGTTCA+AGG | 0.427280 | 1.1:-72195994 | MS.gene006275:CDS |
| AAAGGCTGCTGGATGGGTTA+TGG | 0.430445 | 1.1:-72198572 | MS.gene006275:CDS |
| CTGTGTATGAAGACGATCTT+CGG | 0.437451 | 1.1:-72198840 | MS.gene006275:CDS |
| ACTTGAATATATCTTCCAAC+GGG | 0.444494 | 1.1:+72197806 | None:intergenic |
| TCCAACGGGGTGGCTGTCCT+TGG | 0.464056 | 1.1:+72197820 | None:intergenic |
| GGAGTACGGTTAACGAAAGC+TGG | 0.464646 | 1.1:-72195937 | MS.gene006275:CDS |
| TAGCTTGCGCTCGTTGGGCG+TGG | 0.470914 | 1.1:-72198963 | MS.gene006275:CDS |
| TGGGCGCCTCCTGGTGGCTA+TGG | 0.472533 | 1.1:-72198808 | MS.gene006275:CDS |
| AAAGCAAATCATGCAGCGTC+AGG | 0.480132 | 1.1:-72196125 | MS.gene006275:CDS |
| AATGGGCTGTTAAAGGCTGC+TGG | 0.482503 | 1.1:-72198583 | MS.gene006275:CDS |
| TGCTCGAACCTTCCATCTAC+TGG | 0.484062 | 1.1:+72197241 | None:intergenic |
| CCAGGTGCATAGAGTCTCCT+TGG | 0.485341 | 1.1:+72197537 | None:intergenic |
| CACCAGGAGGCGCCCAAAGA+GGG | 0.495968 | 1.1:+72198815 | None:intergenic |
| CTGCCAATTGCAGTTGATGA+TGG | 0.503555 | 1.1:-72196176 | MS.gene006275:intron |
| TGCTGGATGGGTTATGGATG+CGG | 0.509716 | 1.1:-72198566 | MS.gene006275:CDS |
| GCTATGGAATCAACCCTGAT+TGG | 0.521714 | 1.1:-72198792 | MS.gene006275:CDS |
| AAAAGATGTCTCCACACTGC+AGG | 0.522926 | 1.1:-72198940 | MS.gene006275:CDS |
| CATTATTTGGATAGAGAAAG+AGG | 0.525363 | 1.1:-72197182 | MS.gene006275:CDS |
| GCTGTTAAAGGCTGCTGGAT+GGG | 0.527172 | 1.1:-72198578 | MS.gene006275:CDS |
| GATAGAGAAAGAGGCCCAAA+GGG | 0.528361 | 1.1:-72197173 | MS.gene006275:CDS |
| TTAGGGAAGAGAAAGTTTGA+TGG | 0.529142 | 1.1:-72198619 | MS.gene006275:CDS |
| AGGGCATGACAGTGAAACTT+GGG | 0.536314 | 1.1:-72198920 | MS.gene006275:CDS |
| AGGCTCAAATTCTTCTGTTG+CGG | 0.536990 | 1.1:+72198891 | None:intergenic |
| GGCTGTTAAAGGCTGCTGGA+TGG | 0.539589 | 1.1:-72198579 | MS.gene006275:CDS |
| CCACCAGGAGGCGCCCAAAG+AGG | 0.544467 | 1.1:+72198814 | None:intergenic |
| TAGCGACAAAGACGTGGGAC+AGG | 0.547885 | 1.1:+72198871 | None:intergenic |
| TTGCTTTACAGGTACTTCCA+TGG | 0.554356 | 1.1:+72196141 | None:intergenic |
| CCTCTTTGGGCGCCTCCTGG+TGG | 0.558537 | 1.1:-72198814 | MS.gene006275:CDS |
| TAGGGAAGAGAAAGTTTGAT+GGG | 0.559444 | 1.1:-72198618 | MS.gene006275:CDS |
| CTGACGTAGCATTACAAGAA+AGG | 0.560213 | 1.1:+72197212 | None:intergenic |
| CCAAGGAGACTCTATGCACC+TGG | 0.561142 | 1.1:-72197537 | MS.gene006275:CDS |
| GAGTGATTATGCTGTTCTGT+TGG | 0.561183 | 1.1:-72198650 | MS.gene006275:CDS |
| TTCTAAGTAATAACCAATCA+GGG | 0.562621 | 1.1:+72198779 | None:intergenic |
| CTGCAGCTACTCCTGATCCA+AGG | 0.564734 | 1.1:+72198476 | None:intergenic |
| TCAAAAGTTCCATATTCTGA+TGG | 0.568938 | 1.1:+72196019 | None:intergenic |
| GGGAAGAGAAAGTTTGATGG+GGG | 0.571897 | 1.1:-72198616 | MS.gene006275:CDS |
| AATCCTTAGCCATACCTGAA+AGG | 0.572964 | 1.1:+72197486 | None:intergenic |
| TTAAGCGACATACATCTAGC+AGG | 0.579156 | 1.1:+72198373 | None:intergenic |
| TAGTTCAACTAATAGGAGTA+CGG | 0.579759 | 1.1:-72195951 | MS.gene006275:CDS |
| AGAGGAGAGTTCAAGGTCAG+AGG | 0.582485 | 1.1:-72195987 | MS.gene006275:CDS |
| GACTTGAATATATCTTCCAA+CGG | 0.583155 | 1.1:+72197805 | None:intergenic |
| TGCAGCTACTCCTGATCCAA+GGG | 0.585146 | 1.1:+72198477 | None:intergenic |
| AGTAGCTGCAGCGTTGAGCA+TGG | 0.585878 | 1.1:-72198464 | MS.gene006275:CDS |
| AGAAGATGCTAAAAGATCCA+AGG | 0.590230 | 1.1:-72197554 | MS.gene006275:CDS |
| CAATATACACACTCAACAAG+AGG | 0.590440 | 1.1:+72198988 | None:intergenic |
| CACCTTAAGCACAATAAGCA+TGG | 0.593008 | 1.1:+72197603 | None:intergenic |
| GGATAGAGAAAGAGGCCCAA+AGG | 0.594158 | 1.1:-72197174 | MS.gene006275:CDS |
| AAAGATGTCTCCACACTGCA+GGG | 0.595097 | 1.1:-72198939 | MS.gene006275:CDS |
| CAGCAGTGCCAGTAGATGGA+AGG | 0.597618 | 1.1:-72197249 | MS.gene006275:CDS |
| CAGGAAACAATGACAAGACA+CGG | 0.602595 | 1.1:-72196106 | MS.gene006275:CDS |
| TCAAGATACAATATATATGG+TGG | 0.604903 | 1.1:+72198727 | None:intergenic |
| AAAATATAGCGACAAAGACG+TGG | 0.605455 | 1.1:+72198865 | None:intergenic |
| GTACAAAGATACAAGAGGAC+GGG | 0.607406 | 1.1:-72198752 | MS.gene006275:CDS |
| TGTTTCTGTGCAGATTGGGA+AGG | 0.608268 | 1.1:-72197291 | MS.gene006275:intron |
| ACCAAGGACAGCCACCCCGT+TGG | 0.612019 | 1.1:-72197821 | MS.gene006275:CDS |
| GAGTACGGTTAACGAAAGCT+GGG | 0.612808 | 1.1:-72195936 | MS.gene006275:CDS |
| AAGGGGACTAAATCTGGCAA+AGG | 0.614888 | 1.1:-72198674 | MS.gene006275:CDS |
| GTGCAGAATCGAGATAGACT+TGG | 0.616158 | 1.1:-72198436 | MS.gene006275:CDS |
| ACTGCTGTTCTCACAACTGG+AGG | 0.621198 | 1.1:+72197265 | None:intergenic |
| AAGACGTACAAAGATACAAG+AGG | 0.622138 | 1.1:-72198757 | MS.gene006275:CDS |
| GATATAGTTCTTGCTATAAG+GGG | 0.623233 | 1.1:-72198691 | MS.gene006275:CDS |
| GGGTTGATTCCATAGCCACC+AGG | 0.625363 | 1.1:+72198799 | None:intergenic |
| GTCACAATGTCGATTATCTG+CGG | 0.627450 | 1.1:-72199015 | None:intergenic |
| CACTGTCATGCCCTGCAGTG+TGG | 0.628154 | 1.1:+72198929 | None:intergenic |
| GATGGAGAAAGATAATACCA+TGG | 0.629976 | 1.1:-72196158 | MS.gene006275:CDS |
| GTTAGGATGACTTCTTACCA+AGG | 0.630330 | 1.1:-72197837 | MS.gene006275:intron |
| TATTGTGCTTAAGGTGCATG+AGG | 0.631803 | 1.1:-72197596 | MS.gene006275:CDS |
| AAAGTTCCATATTCTGATGG+TGG | 0.632248 | 1.1:+72196022 | None:intergenic |
| ATAGACTTGGAAATATTGAG+AGG | 0.643093 | 1.1:-72198423 | MS.gene006275:CDS |
| AGGGAAGAGAAAGTTTGATG+GGG | 0.643212 | 1.1:-72198617 | MS.gene006275:CDS |
| ATTGTGCTTAAGGTGCATGA+GGG | 0.654264 | 1.1:-72197595 | MS.gene006275:CDS |
| ACAATGTGATACAAGCGACC+AGG | 0.658544 | 1.1:+72197519 | None:intergenic |
| GGAAGAGAAAGTTTGATGGG+GGG | 0.658997 | 1.1:-72198615 | MS.gene006275:CDS |
| GAATATATCTTCCAACGGGG+TGG | 0.663765 | 1.1:+72197810 | None:intergenic |
| CGTACAAAGATACAAGAGGA+CGG | 0.663943 | 1.1:-72198753 | MS.gene006275:CDS |
| TAAGGATGAGCATGGTCACA+TGG | 0.671907 | 1.1:-72195888 | MS.gene006275:CDS |
| GATGGTGGCGTAAAAGCATG+TGG | 0.680362 | 1.1:+72196037 | None:intergenic |
| AAATATAGCGACAAAGACGT+GGG | 0.685383 | 1.1:+72198866 | None:intergenic |
| GAGGGATACATGTATACCAG+AGG | 0.695751 | 1.1:-72197577 | MS.gene006275:CDS |
| GGGCATGACAGTGAAACTTG+GGG | 0.699008 | 1.1:-72198919 | MS.gene006275:CDS |
| AGCTGCAGCGTTGAGCATGG+TGG | 0.702176 | 1.1:-72198461 | MS.gene006275:CDS |
| TTGATTCCATAGCCACCAGG+AGG | 0.734365 | 1.1:+72198802 | None:intergenic |
| CTTGAATATATCTTCCAACG+GGG | 0.749285 | 1.1:+72197807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAGTACAAAAATTACA+AGG | + | chr1.1:72197757-72197776 | None:intergenic | 20.0% |
| !! | CTAGATGTAAAAATATTCAA+AGG | + | chr1.1:72196629-72196648 | None:intergenic | 20.0% |
| !! | TATCACATAAAATAAACTTC+AGG | + | chr1.1:72196776-72196795 | None:intergenic | 20.0% |
| !! | TCTAAGAATTTCAAATCTTA+AGG | + | chr1.1:72197853-72197872 | None:intergenic | 20.0% |
| !! | TGATCAAGATACAATATATA+TGG | + | chr1.1:72196162-72196181 | None:intergenic | 20.0% |
| !! | TGTCAACTATAATTAAGATT+TGG | - | chr1.1:72197827-72197846 | MS.gene006275:CDS | 20.0% |
| !! | TTCTGTTGGATAATAAATTA+GGG | - | chr1.1:72196247-72196266 | MS.gene006275:intron | 20.0% |
| !! | TTTATTATGAGAGATAGTAA+AGG | - | chr1.1:72196830-72196849 | MS.gene006275:intron | 20.0% |
| !!! | AATTTTTGTACTTCATTCTT+TGG | - | chr1.1:72197760-72197779 | MS.gene006275:intron | 20.0% |
| !!! | TATGTTTTCGTAAAATATCA+TGG | + | chr1.1:72198192-72198211 | None:intergenic | 20.0% |
| ! | AATTATACTCTTACATTTGC+TGG | - | chr1.1:72196378-72196397 | MS.gene006275:intron | 25.0% |
| ! | ATAAGCTCCAATAAGTAATA+AGG | + | chr1.1:72198077-72198096 | None:intergenic | 25.0% |
| ! | ATGAAGCTGAAAACAATTTA+TGG | + | chr1.1:72198162-72198181 | None:intergenic | 25.0% |
| ! | GTATGCATACAAATTATCAT+AGG | - | chr1.1:72198020-72198039 | MS.gene006275:intron | 25.0% |
| ! | GTTCTGTTGGATAATAAATT+AGG | - | chr1.1:72196246-72196265 | MS.gene006275:intron | 25.0% |
| ! | TAAATAGAATGCCAAATTAG+TGG | + | chr1.1:72198650-72198669 | None:intergenic | 25.0% |
| ! | TCAAGATACAATATATATGG+TGG | + | chr1.1:72196159-72196178 | None:intergenic | 25.0% |
| ! | TGAAGCTGAAAACAATTTAT+GGG | + | chr1.1:72198161-72198180 | None:intergenic | 25.0% |
| ! | TGGAACTTGATTGATTATTT+AGG | + | chr1.1:72198630-72198649 | None:intergenic | 25.0% |
| ! | TTAGTTAATTTCAACTGTTG+AGG | - | chr1.1:72196920-72196939 | MS.gene006275:intron | 25.0% |
| ! | TTCTAAGTAATAACCAATCA+GGG | + | chr1.1:72196107-72196126 | None:intergenic | 25.0% |
| ! | TTTCTAAGTAATAACCAATC+AGG | + | chr1.1:72196108-72196127 | None:intergenic | 25.0% |
| !! | ATATATTCAAGTCTCTTTTC+TGG | - | chr1.1:72197088-72197107 | MS.gene006275:intron | 25.0% |
| !! | ATGAGAAGATATTGTTTTCT+TGG | - | chr1.1:72197245-72197264 | MS.gene006275:CDS | 25.0% |
| !! | GCAAATGTAAGAGTATAATT+TGG | + | chr1.1:72196378-72196397 | None:intergenic | 25.0% |
| !! | TAATTTGTATGCATACTTGA+AGG | + | chr1.1:72198016-72198035 | None:intergenic | 25.0% |
| !! | TGATATAGTTCTTGCTATAA+GGG | - | chr1.1:72196191-72196210 | MS.gene006275:intron | 25.0% |
| AAATATTCAAAGGAACGACA+AGG | + | chr1.1:72196619-72196638 | None:intergenic | 30.0% | |
| AAATGTAAAGCCAAACGAAA+AGG | + | chr1.1:72197564-72197583 | None:intergenic | 30.0% | |
| ACTTGAATATATCTTCCAAC+GGG | + | chr1.1:72197080-72197099 | None:intergenic | 30.0% | |
| AGTAATAAGGCAATCCAAAT+AGG | + | chr1.1:72198064-72198083 | None:intergenic | 30.0% | |
| ATAACGAAGTTAGTCGTATT+AGG | + | chr1.1:72197128-72197147 | None:intergenic | 30.0% | |
| ATAGACTTGGAAATATTGAG+AGG | - | chr1.1:72196460-72196479 | MS.gene006275:intron | 30.0% | |
| ATGCATACTTGAAGGAAATA+TGG | + | chr1.1:72198008-72198027 | None:intergenic | 30.0% | |
| CATTATTTGGATAGAGAAAG+AGG | - | chr1.1:72197701-72197720 | MS.gene006275:intron | 30.0% | |
| CTCTTTCTCTATCCAAATAA+TGG | + | chr1.1:72197703-72197722 | None:intergenic | 30.0% | |
| CTTCTGTTAGTTCAACTAAT+AGG | - | chr1.1:72198925-72198944 | MS.gene006275:CDS | 30.0% | |
| GAAGGCAATTTCCAAAATTA+TGG | + | chr1.1:72197450-72197469 | None:intergenic | 30.0% | |
| GACTTGAATATATCTTCCAA+CGG | + | chr1.1:72197081-72197100 | None:intergenic | 30.0% | |
| GTCAGCTTGAATAAGTATAA+GGG | + | chr1.1:72196977-72196996 | None:intergenic | 30.0% | |
| TAACGAAGTTAGTCGTATTA+GGG | + | chr1.1:72197127-72197146 | None:intergenic | 30.0% | |
| TAGTTCAACTAATAGGAGTA+CGG | - | chr1.1:72198932-72198951 | MS.gene006275:CDS | 30.0% | |
| TATCAATTTGAGCTTCTTGT+AGG | - | chr1.1:72198604-72198623 | MS.gene006275:CDS | 30.0% | |
| TCAAAAGTTCCATATTCTGA+TGG | + | chr1.1:72198867-72198886 | None:intergenic | 30.0% | |
| TCAATCAAGTTCCACTAATT+TGG | - | chr1.1:72198636-72198655 | MS.gene006275:CDS | 30.0% | |
| ! | AGAATATGGAACTTTTGATG+AGG | - | chr1.1:72198869-72198888 | MS.gene006275:CDS | 30.0% |
| ! | CAGAACTGTAACCATAATTT+TGG | - | chr1.1:72197436-72197455 | MS.gene006275:intron | 30.0% |
| ! | CTGATATAGTTCTTGCTATA+AGG | - | chr1.1:72196190-72196209 | MS.gene006275:intron | 30.0% |
| ! | GATATAGTTCTTGCTATAAG+GGG | - | chr1.1:72196192-72196211 | MS.gene006275:intron | 30.0% |
| ! | TAGATGTATGTCGCTTAATT+TGG | - | chr1.1:72196515-72196534 | MS.gene006275:intron | 30.0% |
| ! | TGGATTGCCTTATTACTTAT+TGG | - | chr1.1:72198067-72198086 | MS.gene006275:intron | 30.0% |
| ! | TGTTAAATTAGAGCTTTTGC+TGG | - | chr1.1:72196663-72196682 | MS.gene006275:intron | 30.0% |
| ! | TTTTGTACTTCATTCTTTGG+TGG | - | chr1.1:72197763-72197782 | MS.gene006275:intron | 30.0% |
| !! | AAGTTAATCGCTATTTTCCT+TGG | - | chr1.1:72197024-72197043 | MS.gene006275:intron | 30.0% |
| AAAATATAGCGACAAAGACG+TGG | + | chr1.1:72196021-72196040 | None:intergenic | 35.0% | |
| AAAGTTCCATATTCTGATGG+TGG | + | chr1.1:72198864-72198883 | None:intergenic | 35.0% | |
| AAATATAGCGACAAAGACGT+GGG | + | chr1.1:72196020-72196039 | None:intergenic | 35.0% | |
| AAGACGTACAAAGATACAAG+AGG | - | chr1.1:72196126-72196145 | MS.gene006275:CDS | 35.0% | |
| AATCCAAATAGGCCATAAGT+AGG | + | chr1.1:72198053-72198072 | None:intergenic | 35.0% | |
| ACTTATTGGAGCTTATCTAC+TGG | - | chr1.1:72198081-72198100 | MS.gene006275:intron | 35.0% | |
| AGAAGATGCTAAAAGATCCA+AGG | - | chr1.1:72197329-72197348 | MS.gene006275:intron | 35.0% | |
| ATACACTGTGTTTGAACTGA+AGG | + | chr1.1:72197468-72197487 | None:intergenic | 35.0% | |
| ATATTGAGAGGAAGAGAGTT+AGG | - | chr1.1:72196472-72196491 | MS.gene006275:intron | 35.0% | |
| ATCCAAATAGGCCATAAGTA+GGG | + | chr1.1:72198052-72198071 | None:intergenic | 35.0% | |
| ATGCATACTTGAAGGACATA+TGG | + | chr1.1:72198306-72198325 | None:intergenic | 35.0% | |
| CAATATACACACTCAACAAG+AGG | + | chr1.1:72195898-72195917 | None:intergenic | 35.0% | |
| CAGAGAGAAACAATTTATGG+CGG | - | chr1.1:72196709-72196728 | MS.gene006275:intron | 35.0% | |
| CTTGAATATATCTTCCAACG+GGG | + | chr1.1:72197079-72197098 | None:intergenic | 35.0% | |
| GATGGAGAAAGATAATACCA+TGG | - | chr1.1:72198725-72198744 | MS.gene006275:CDS | 35.0% | |
| GGTCAGCTTGAATAAGTATA+AGG | + | chr1.1:72196978-72196997 | None:intergenic | 35.0% | |
| TACAAGATTCAGCATGAATC+AGG | + | chr1.1:72196999-72197018 | None:intergenic | 35.0% | |
| TAGGGAAGAGAAAGTTTGAT+GGG | - | chr1.1:72196265-72196284 | MS.gene006275:intron | 35.0% | |
| TGCCAGAGAGAAACAATTTA+TGG | - | chr1.1:72196706-72196725 | MS.gene006275:intron | 35.0% | |
| TTAGGGAAGAGAAAGTTTGA+TGG | - | chr1.1:72196264-72196283 | MS.gene006275:intron | 35.0% | |
| TTTCAACTGTTGAGGTTAAG+TGG | - | chr1.1:72196928-72196947 | MS.gene006275:intron | 35.0% | |
| ! | CAATCGAACATTTTTCCATC+AGG | + | chr1.1:72196803-72196822 | None:intergenic | 35.0% |
| ! | CTTTTTGATAAGGATGAGCA+TGG | - | chr1.1:72198987-72199006 | MS.gene006275:CDS | 35.0% |
| ! | GATTGAGCGTCTTTTTGATA+AGG | - | chr1.1:72198977-72198996 | MS.gene006275:CDS | 35.0% |
| ! | GTAATGCAGCTTTGTATTCT+TGG | + | chr1.1:72198803-72198822 | None:intergenic | 35.0% |
| ! | TATGGAACTTTTGATGAGGA+AGG | - | chr1.1:72198873-72198892 | MS.gene006275:CDS | 35.0% |
| !! | AATCGCTATTTTCCTTGGTT+AGG | - | chr1.1:72197029-72197048 | MS.gene006275:intron | 35.0% |
| !! | GTGTGAAATTTTGAGGGAAT+TGG | - | chr1.1:72196341-72196360 | MS.gene006275:intron | 35.0% |
| !!! | CTTTTTGATTTCCCTACACA+TGG | + | chr1.1:72197967-72197986 | None:intergenic | 35.0% |
| AATCCTTAGCCATACCTGAA+AGG | + | chr1.1:72197400-72197419 | None:intergenic | 40.0% | |
| ACTTACATCCAAAGCCCTTT+GGG | + | chr1.1:72197727-72197746 | None:intergenic | 40.0% | |
| AGGCTCAAATTCTTCTGTTG+CGG | + | chr1.1:72195995-72196014 | None:intergenic | 40.0% | |
| AGGGAAGAGAAAGTTTGATG+GGG | - | chr1.1:72196266-72196285 | MS.gene006275:intron | 40.0% | |
| ATTGTGCTTAAGGTGCATGA+GGG | - | chr1.1:72197288-72197307 | MS.gene006275:intron | 40.0% | |
| CACCTTAAGCACAATAAGCA+TGG | + | chr1.1:72197283-72197302 | None:intergenic | 40.0% | |
| CAGGAAACAATGACAAGACA+CGG | - | chr1.1:72198777-72198796 | MS.gene006275:CDS | 40.0% | |
| CGTACAAAGATACAAGAGGA+CGG | - | chr1.1:72196130-72196149 | MS.gene006275:CDS | 40.0% | |
| CGTCAGATCATGCCATTATT+TGG | - | chr1.1:72197688-72197707 | MS.gene006275:intron | 40.0% | |
| CTGACGTAGCATTACAAGAA+AGG | + | chr1.1:72197674-72197693 | None:intergenic | 40.0% | |
| CTGTGTATGAAGACGATCTT+CGG | - | chr1.1:72196043-72196062 | MS.gene006275:CDS | 40.0% | |
| GAGTGATTATGCTGTTCTGT+TGG | - | chr1.1:72196233-72196252 | MS.gene006275:intron | 40.0% | |
| GTAAGAAGTCATCCTAACCA+AGG | + | chr1.1:72197044-72197063 | None:intergenic | 40.0% | |
| GTACAAAGATACAAGAGGAC+GGG | - | chr1.1:72196131-72196150 | MS.gene006275:CDS | 40.0% | |
| GTTAGGATGACTTCTTACCA+AGG | - | chr1.1:72197046-72197065 | MS.gene006275:intron | 40.0% | |
| TACCACATCTACCATGTGTA+GGG | - | chr1.1:72197953-72197972 | MS.gene006275:intron | 40.0% | |
| TATTGTGCTTAAGGTGCATG+AGG | - | chr1.1:72197287-72197306 | MS.gene006275:intron | 40.0% | |
| TCCAAATAGGCCATAAGTAG+GGG | + | chr1.1:72198051-72198070 | None:intergenic | 40.0% | |
| TCTCCATCATCAACTGCAAT+TGG | + | chr1.1:72198713-72198732 | None:intergenic | 40.0% | |
| TGCCATGCTTATTGTGCTTA+AGG | - | chr1.1:72197278-72197297 | MS.gene006275:CDS | 40.0% | |
| TGCTATAAGGGGACTAAATC+TGG | - | chr1.1:72196203-72196222 | MS.gene006275:intron | 40.0% | |
| TTAAGCGACATACATCTAGC+AGG | + | chr1.1:72196513-72196532 | None:intergenic | 40.0% | |
| TTGCTTTACAGGTACTTCCA+TGG | + | chr1.1:72198745-72198764 | None:intergenic | 40.0% | |
| TTGTTGAGAGAAAGCCTTTC+AGG | - | chr1.1:72197383-72197402 | MS.gene006275:intron | 40.0% | |
| TTTACGCCACCATCAGAATA+TGG | - | chr1.1:72198855-72198874 | MS.gene006275:CDS | 40.0% | |
| ! | AACTTTTGATGAGGAAGGAG+AGG | - | chr1.1:72198878-72198897 | MS.gene006275:CDS | 40.0% |
| ! | ATAGGTTTTCCCCCTACTTA+TGG | - | chr1.1:72198038-72198057 | MS.gene006275:intron | 40.0% |
| ! | ATGCGGAGTGTGAAATTTTG+AGG | - | chr1.1:72196334-72196353 | MS.gene006275:intron | 40.0% |
| ! | CGCCATAAATTGTTTCTCTC+TGG | + | chr1.1:72196711-72196730 | None:intergenic | 40.0% |
| ! | GCTTATACAGCCTTTTCGTT+TGG | - | chr1.1:72197551-72197570 | MS.gene006275:CDS | 40.0% |
| ! | TCTTTTAGCATCTTCTCCTC+TGG | + | chr1.1:72197325-72197344 | None:intergenic | 40.0% |
| ! | TGCGGAGTGTGAAATTTTGA+GGG | - | chr1.1:72196335-72196354 | MS.gene006275:intron | 40.0% |
| ! | TTTATGTGATAGCGACCTGA+TGG | - | chr1.1:72196785-72196804 | MS.gene006275:intron | 40.0% |
| !! | AACACTGTTTCTGTGCAGAT+TGG | - | chr1.1:72197587-72197606 | MS.gene006275:CDS | 40.0% |
| !! | ACACTGTTTCTGTGCAGATT+GGG | - | chr1.1:72197588-72197607 | MS.gene006275:CDS | 40.0% |
| !! | TGTTCACAATGGGCTGTTAA+AGG | - | chr1.1:72196293-72196312 | MS.gene006275:intron | 40.0% |
| AAAAGATGTCTCCACACTGC+AGG | - | chr1.1:72195943-72195962 | MS.gene006275:CDS | 45.0% | |
| AAAGATGTCTCCACACTGCA+GGG | - | chr1.1:72195944-72195963 | MS.gene006275:CDS | 45.0% | |
| AAAGCAAATCATGCAGCGTC+AGG | - | chr1.1:72198758-72198777 | MS.gene006275:CDS | 45.0% | |
| AAGGGGACTAAATCTGGCAA+AGG | - | chr1.1:72196209-72196228 | MS.gene006275:intron | 45.0% | |
| ACAATGTGATACAAGCGACC+AGG | + | chr1.1:72197367-72197386 | None:intergenic | 45.0% | |
| AGGGCATGACAGTGAAACTT+GGG | - | chr1.1:72195963-72195982 | MS.gene006275:CDS | 45.0% | |
| CATAAACTCTGTCGTGCTTC+AGG | - | chr1.1:72196557-72196576 | MS.gene006275:intron | 45.0% | |
| CCAAATAGGCCATAAGTAGG+GGG | + | chr1.1:72198050-72198069 | None:intergenic | 45.0% | |
| CTACCACATCTACCATGTGT+AGG | - | chr1.1:72197952-72197971 | MS.gene006275:intron | 45.0% | |
| GAATATATCTTCCAACGGGG+TGG | + | chr1.1:72197076-72197095 | None:intergenic | 45.0% | |
| GACTTACATCCAAAGCCCTT+TGG | + | chr1.1:72197728-72197747 | None:intergenic | 45.0% | |
| GAGGGATACATGTATACCAG+AGG | - | chr1.1:72197306-72197325 | MS.gene006275:intron | 45.0% | |
| GAGTACGGTTAACGAAAGCT+GGG | - | chr1.1:72198947-72198966 | MS.gene006275:CDS | 45.0% | |
| GATAGAGAAAGAGGCCCAAA+GGG | - | chr1.1:72197710-72197729 | MS.gene006275:intron | 45.0% | |
| GCTATGGAATCAACCCTGAT+TGG | - | chr1.1:72196091-72196110 | MS.gene006275:CDS | 45.0% | |
| GGAAGAGAAAGTTTGATGGG+GGG | - | chr1.1:72196268-72196287 | MS.gene006275:intron | 45.0% | |
| GGGAAGAGAAAGTTTGATGG+GGG | - | chr1.1:72196267-72196286 | MS.gene006275:intron | 45.0% | |
| GTGCAGAATCGAGATAGACT+TGG | - | chr1.1:72196447-72196466 | MS.gene006275:intron | 45.0% | |
| TAAGGATGAGCATGGTCACA+TGG | - | chr1.1:72198995-72199014 | MS.gene006275:CDS | 45.0% | |
| TCATCAACTGCAATTGGCAG+TGG | + | chr1.1:72198707-72198726 | None:intergenic | 45.0% | |
| TGAGCACTTGTGAGACTAGT+TGG | - | chr1.1:72198106-72198125 | MS.gene006275:intron | 45.0% | |
| TGGTAGATGTGGTAGACACA+TGG | + | chr1.1:72197947-72197966 | None:intergenic | 45.0% | |
| TTCCCTACACATGGTAGATG+TGG | + | chr1.1:72197958-72197977 | None:intergenic | 45.0% | |
| ! | AAGCCTTTCAGGTATGGCTA+AGG | - | chr1.1:72197394-72197413 | MS.gene006275:intron | 45.0% |
| ! | ACATTTGCTGGACATTCCCT+TGG | - | chr1.1:72196390-72196409 | MS.gene006275:intron | 45.0% |
| ! | AGCACTTGTGAGACTAGTTG+GGG | - | chr1.1:72198108-72198127 | MS.gene006275:intron | 45.0% |
| ! | ATGGGGGGTATGTTCACAAT+GGG | - | chr1.1:72196283-72196302 | MS.gene006275:intron | 45.0% |
| ! | GAGAGAAAGCCTTTCAGGTA+TGG | - | chr1.1:72197388-72197407 | MS.gene006275:intron | 45.0% |
| ! | GAGCACTTGTGAGACTAGTT+GGG | - | chr1.1:72198107-72198126 | MS.gene006275:intron | 45.0% |
| ! | TGTTTCTGTGCAGATTGGGA+AGG | - | chr1.1:72197592-72197611 | MS.gene006275:CDS | 45.0% |
| !! | ATTGTTTAGCTTGCGCTCGT+TGG | - | chr1.1:72195914-72195933 | MS.gene006275:CDS | 45.0% |
| !! | CGCTGCATGATTTGCTTTAC+AGG | + | chr1.1:72198756-72198775 | None:intergenic | 45.0% |
| !! | CTGCCAATTGCAGTTGATGA+TGG | - | chr1.1:72198707-72198726 | MS.gene006275:CDS | 45.0% |
| !! | TTGTTTAGCTTGCGCTCGTT+GGG | - | chr1.1:72195915-72195934 | MS.gene006275:CDS | 45.0% |
| !!! | TTTTTTTTATTATATATCAA+TGG | + | chr1.1:72197528-72197547 | None:intergenic | 5.0% |
| ACGATCTTCGGAACCCTCTT+TGG | - | chr1.1:72196055-72196074 | MS.gene006275:CDS | 50.0% | |
| ACTGCTGTTCTCACAACTGG+AGG | + | chr1.1:72197621-72197640 | None:intergenic | 50.0% | |
| AGAACAGCAGTGCCAGTAGA+TGG | - | chr1.1:72197630-72197649 | MS.gene006275:intron | 50.0% | |
| AGAGGAGAGTTCAAGGTCAG+AGG | - | chr1.1:72198896-72198915 | MS.gene006275:CDS | 50.0% | |
| AGGAAGGAGAGGAGAGTTCA+AGG | - | chr1.1:72198889-72198908 | MS.gene006275:CDS | 50.0% | |
| CAGGGCATGACAGTGAAACT+TGG | - | chr1.1:72195962-72195981 | MS.gene006275:CDS | 50.0% | |
| CCCCCTACTTATGGCCTATT+TGG | - | chr1.1:72198047-72198066 | MS.gene006275:intron | 50.0% | |
| CGATCTTCGGAACCCTCTTT+GGG | - | chr1.1:72196056-72196075 | MS.gene006275:CDS | 50.0% | |
| GCTGTTAAAGGCTGCTGGAT+GGG | - | chr1.1:72196305-72196324 | MS.gene006275:intron | 50.0% | |
| GGAGTACGGTTAACGAAAGC+TGG | - | chr1.1:72198946-72198965 | MS.gene006275:CDS | 50.0% | |
| GGATAGAGAAAGAGGCCCAA+AGG | - | chr1.1:72197709-72197728 | MS.gene006275:intron | 50.0% | |
| GGGCATGACAGTGAAACTTG+GGG | - | chr1.1:72195964-72195983 | MS.gene006275:CDS | 50.0% | |
| TGCAGCTACTCCTGATCCAA+GGG | + | chr1.1:72196409-72196428 | None:intergenic | 50.0% | |
| TGCTCGAACCTTCCATCTAC+TGG | + | chr1.1:72197645-72197664 | None:intergenic | 50.0% | |
| TTGATTCCATAGCCACCAGG+AGG | + | chr1.1:72196084-72196103 | None:intergenic | 50.0% | |
| ! | GATGGGGGGTATGTTCACAA+TGG | - | chr1.1:72196282-72196301 | MS.gene006275:intron | 50.0% |
| ! | GATGGTGGCGTAAAAGCATG+TGG | + | chr1.1:72198849-72198868 | None:intergenic | 50.0% |
| ! | GCACTTGTGAGACTAGTTGG+GGG | - | chr1.1:72198109-72198128 | MS.gene006275:intron | 50.0% |
| !! | AAAGGCTGCTGGATGGGTTA+TGG | - | chr1.1:72196311-72196330 | MS.gene006275:intron | 50.0% |
| !! | AATGGGCTGTTAAAGGCTGC+TGG | - | chr1.1:72196300-72196319 | MS.gene006275:intron | 50.0% |
| !! | TGCTGGATGGGTTATGGATG+CGG | - | chr1.1:72196317-72196336 | MS.gene006275:intron | 50.0% |
| CAGCAGTGCCAGTAGATGGA+AGG | - | chr1.1:72197634-72197653 | MS.gene006275:intron | 55.0% | |
| CCAAGGAGACTCTATGCACC+TGG | - | chr1.1:72197346-72197365 | MS.gene006275:intron | 55.0% | |
| CCAGGTGCATAGAGTCTCCT+TGG | + | chr1.1:72197349-72197368 | None:intergenic | 55.0% | |
| CTGCAGCTACTCCTGATCCA+AGG | + | chr1.1:72196410-72196429 | None:intergenic | 55.0% | |
| GAAAGAGGCCCAAAGGGCTT+TGG | - | chr1.1:72197716-72197735 | MS.gene006275:intron | 55.0% | |
| GCTGGACATTCCCTTGGATC+AGG | - | chr1.1:72196396-72196415 | MS.gene006275:intron | 55.0% | |
| GGCACTGCTGTTCTCACAAC+TGG | + | chr1.1:72197624-72197643 | None:intergenic | 55.0% | |
| GGCTGTTAAAGGCTGCTGGA+TGG | - | chr1.1:72196304-72196323 | MS.gene006275:intron | 55.0% | |
| TAGCGACAAAGACGTGGGAC+AGG | + | chr1.1:72196015-72196034 | None:intergenic | 55.0% | |
| ! | AGACTAGTTGGGGGAGCTTG+TGG | - | chr1.1:72198118-72198137 | MS.gene006275:intron | 55.0% |
| ! | AGTAGCTGCAGCGTTGAGCA+TGG | - | chr1.1:72196419-72196438 | MS.gene006275:intron | 55.0% |
| ! | GGGTTGATTCCATAGCCACC+AGG | + | chr1.1:72196087-72196106 | None:intergenic | 55.0% |
| CACTGTCATGCCCTGCAGTG+TGG | + | chr1.1:72195957-72195976 | None:intergenic | 60.0% | |
| ! | AGCTGCAGCGTTGAGCATGG+TGG | - | chr1.1:72196422-72196441 | MS.gene006275:intron | 60.0% |
| AACCCTCTTTGGGCGCCTCC+TGG | - | chr1.1:72196066-72196085 | MS.gene006275:CDS | 65.0% | |
| ACCAAGGACAGCCACCCCGT+TGG | - | chr1.1:72197062-72197081 | MS.gene006275:intron | 65.0% | |
| TCCAACGGGGTGGCTGTCCT+TGG | + | chr1.1:72197066-72197085 | None:intergenic | 65.0% | |
| ! | TAGCTTGCGCTCGTTGGGCG+TGG | - | chr1.1:72195920-72195939 | MS.gene006275:CDS | 65.0% |
| !! | CACCAGGAGGCGCCCAAAGA+GGG | + | chr1.1:72196071-72196090 | None:intergenic | 65.0% |
| CCTCTTTGGGCGCCTCCTGG+TGG | - | chr1.1:72196069-72196088 | MS.gene006275:CDS | 70.0% | |
| TGGGCGCCTCCTGGTGGCTA+TGG | - | chr1.1:72196075-72196094 | MS.gene006275:CDS | 70.0% | |
| !! | CCACCAGGAGGCGCCCAAAG+AGG | + | chr1.1:72196072-72196091 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 72195874 | 72199031 | 72195874 | ID=MS.gene006275 |
| chr1.1 | mRNA | 72195874 | 72199031 | 72195874 | ID=MS.gene006275.t1;Parent=MS.gene006275 |
| chr1.1 | exon | 72198351 | 72199031 | 72198351 | ID=MS.gene006275.t1.exon1;Parent=MS.gene006275.t1 |
| chr1.1 | CDS | 72198351 | 72199031 | 72198351 | ID=cds.MS.gene006275.t1;Parent=MS.gene006275.t1 |
| chr1.1 | exon | 72197796 | 72197854 | 72197796 | ID=MS.gene006275.t1.exon2;Parent=MS.gene006275.t1 |
| chr1.1 | CDS | 72197796 | 72197854 | 72197796 | ID=cds.MS.gene006275.t1;Parent=MS.gene006275.t1 |
| chr1.1 | exon | 72197501 | 72197629 | 72197501 | ID=MS.gene006275.t1.exon3;Parent=MS.gene006275.t1 |
| chr1.1 | CDS | 72197501 | 72197629 | 72197501 | ID=cds.MS.gene006275.t1;Parent=MS.gene006275.t1 |
| chr1.1 | exon | 72197165 | 72197300 | 72197165 | ID=MS.gene006275.t1.exon4;Parent=MS.gene006275.t1 |
| chr1.1 | CDS | 72197165 | 72197300 | 72197165 | ID=cds.MS.gene006275.t1;Parent=MS.gene006275.t1 |
| chr1.1 | exon | 72195874 | 72196185 | 72195874 | ID=MS.gene006275.t1.exon5;Parent=MS.gene006275.t1 |
| chr1.1 | CDS | 72195874 | 72196185 | 72195874 | ID=cds.MS.gene006275.t1;Parent=MS.gene006275.t1 |
| Gene Sequence |
| Protein sequence |
