AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006796

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006796.t1 MTR_4g081950 98.790 248 3 0 1 248 37 284 0.0 504
MS.gene006796.t1 MTR_5g041700 86.235 247 34 0 1 247 1 247 1.71e-163 452
MS.gene006796.t1 MTR_3g094040 80.165 242 48 0 6 247 12 253 3.35e-146 409
MS.gene006796.t1 MTR_3g094060 80.165 242 48 0 6 247 12 253 7.15e-146 408
MS.gene006796.t1 MTR_3g435430 82.051 234 42 0 14 247 14 247 2.12e-144 404
MS.gene006796.t1 MTR_5g075320 77.143 245 55 1 4 247 7 251 1.89e-139 392
MS.gene006796.t1 MTR_3g466790 76.923 247 57 0 1 247 8 254 8.33e-136 382
MS.gene006796.t1 MTR_3g466760 76.210 248 57 2 1 247 14 260 5.38e-134 378
MS.gene006796.t1 MTR_7g011060 74.699 249 52 3 1 247 1 240 1.08e-132 374
MS.gene006796.t1 MTR_5g079950 70.732 246 69 2 1 244 10 254 7.02e-128 362
MS.gene006796.t1 MTR_7g061720 68.379 253 71 3 1 244 1 253 2.00e-123 351
MS.gene006796.t1 MTR_6g012520 74.502 251 53 3 1 248 1 243 3.79e-123 350
MS.gene006796.t1 MTR_2g097030 69.048 252 68 4 1 244 6 255 4.42e-123 350
MS.gene006796.t1 MTR_1g026020 63.563 247 85 4 1 243 5 250 1.38e-114 329
MS.gene006796.t1 MTR_4g063975 66.400 250 77 3 1 244 5 253 2.08e-114 328
MS.gene006796.t1 MTR_1g085460 64.502 231 78 3 16 242 21 251 4.26e-107 310
MS.gene006796.t1 MTR_7g111010 60.408 245 88 4 7 242 4 248 3.28e-104 302
MS.gene006796.t1 MTR_7g110990 61.667 240 78 4 7 242 4 233 1.47e-103 300
MS.gene006796.t1 MTR_4g124340 57.778 225 90 3 23 244 59 281 6.30e-97 285
MS.gene006796.t1 MTR_7g013120 55.731 253 103 4 1 246 1 251 9.44e-95 278
MS.gene006796.t1 MTR_7g013150 59.091 220 86 2 25 242 30 247 6.97e-94 276
MS.gene006796.t1 MTR_7g013140 58.108 222 89 2 25 244 28 247 2.73e-91 270
MS.gene006796.t1 MTR_8g058990 57.399 223 91 2 25 245 30 250 3.22e-91 270
MS.gene006796.t1 MTR_5g076950 56.250 224 97 1 25 247 41 264 2.94e-90 267
MS.gene006796.t1 MTR_8g464350 56.364 220 92 2 25 242 31 248 3.94e-88 261
MS.gene006796.t1 MTR_5g011210 55.405 222 95 3 25 243 37 257 1.46e-86 258
MS.gene006796.t1 MTR_0040s0140 52.889 225 104 1 25 247 32 256 7.91e-86 256
MS.gene006796.t1 MTR_4g102450 55.605 223 93 4 25 243 36 256 2.74e-84 252
MS.gene006796.t1 MTR_2g090255 52.232 224 105 1 25 246 28 251 3.93e-84 251
MS.gene006796.t1 MTR_3g064510 52.586 232 101 5 25 247 53 284 2.68e-78 238
MS.gene006796.t1 MTR_0008s0120 43.439 221 69 3 25 245 32 196 2.51e-52 169
MS.gene006796.t1 MTR_6g012500 77.228 101 23 0 148 248 181 281 1.33e-51 169
MS.gene006796.t1 MTR_2g090270 30.769 234 132 9 25 243 35 253 1.26e-26 104
MS.gene006796.t1 MTR_2g090265 31.197 234 131 10 25 243 33 251 1.37e-25 101
MS.gene006796.t1 MTR_0118s0070 32.314 229 127 10 30 242 53 269 2.13e-24 98.6
MS.gene006796.t1 MTR_0122s0020 31.602 231 134 9 25 243 41 259 5.05e-24 97.4
MS.gene006796.t1 MTR_4g028640 29.218 243 139 11 16 242 33 258 1.72e-20 87.8
MS.gene006796.t1 MTR_0809s0010 29.536 237 129 12 25 242 47 264 3.75e-20 87.0
MS.gene006796.t1 MTR_4g099370 27.347 245 161 9 6 242 9 244 5.96e-18 80.9
MS.gene006796.t1 MTR_5g013440 26.446 242 163 8 8 242 12 245 1.58e-16 77.0
MS.gene006796.t1 MTR_1g085365 60.784 51 20 0 192 242 4 54 1.96e-15 68.9
MS.gene006796.t1 MTR_4g075790 28.700 223 126 8 36 242 32 237 2.56e-15 73.6
MS.gene006796.t1 MTR_4g098930 29.461 241 135 12 25 247 29 252 3.40e-15 73.2
MS.gene006796.t1 MTR_0122s0020 31.250 176 98 8 25 189 41 204 5.68e-14 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006796.t1 AT1G69530 82.329 249 42 2 1 247 1 249 6.18e-151 421
MS.gene006796.t1 AT1G69530 82.329 249 42 2 1 247 1 249 6.18e-151 421
MS.gene006796.t1 AT2G03090 78.947 247 52 0 1 247 6 252 3.68e-149 416
MS.gene006796.t1 AT1G69530 82.449 245 41 2 1 243 1 245 8.63e-149 416
MS.gene006796.t1 AT1G26770 81.855 248 44 1 1 247 1 248 2.30e-141 396
MS.gene006796.t1 AT1G26770 81.855 248 44 1 1 247 11 258 3.51e-141 396
MS.gene006796.t1 AT5G56320 72.510 251 65 1 1 247 1 251 8.75e-136 382
MS.gene006796.t1 AT5G56320 72.510 251 65 1 1 247 1 251 8.75e-136 382
MS.gene006796.t1 AT5G56320 72.510 251 65 1 1 247 1 251 5.04e-135 382
MS.gene006796.t1 AT2G40610 74.074 243 62 1 6 247 11 253 5.31e-135 380
MS.gene006796.t1 AT2G39700 69.444 252 69 2 1 244 1 252 5.03e-127 360
MS.gene006796.t1 AT5G05290 69.076 249 74 2 2 247 7 255 2.40e-126 358
MS.gene006796.t1 AT1G69530 71.888 249 38 3 1 247 1 219 3.03e-125 354
MS.gene006796.t1 AT1G69530 73.333 240 52 4 1 238 1 230 4.82e-125 355
MS.gene006796.t1 AT5G02260 67.742 248 76 2 1 244 6 253 1.34e-124 354
MS.gene006796.t1 AT2G37640 70.539 241 68 2 6 244 18 257 1.40e-124 354
MS.gene006796.t1 AT3G55500 73.333 225 58 1 22 244 31 255 3.07e-124 353
MS.gene006796.t1 AT3G29030 74.107 224 49 2 25 247 38 253 1.15e-119 342
MS.gene006796.t1 AT2G28950 66.667 252 76 2 1 244 1 252 3.86e-117 335
MS.gene006796.t1 AT1G20190 71.300 223 61 2 24 243 25 247 1.92e-114 328
MS.gene006796.t1 AT2G37640 71.707 205 56 1 42 244 28 232 9.16e-110 316
MS.gene006796.t1 AT4G01630 62.762 239 85 3 8 242 11 249 8.68e-107 309
MS.gene006796.t1 AT5G39280 56.067 239 100 2 9 244 35 271 4.11e-98 288
MS.gene006796.t1 AT5G39300 58.636 220 89 1 25 244 55 272 2.78e-97 286
MS.gene006796.t1 AT5G39270 58.182 220 90 1 25 244 58 275 1.90e-93 276
MS.gene006796.t1 AT5G39290 57.273 220 92 1 25 244 58 275 1.17e-92 274
MS.gene006796.t1 AT1G20190 68.449 187 56 2 60 243 2 188 2.61e-91 268
MS.gene006796.t1 AT5G39310 56.757 222 93 2 24 244 89 308 3.51e-89 266
MS.gene006796.t1 AT1G12560 55.217 230 100 3 15 242 27 255 1.96e-86 258
MS.gene006796.t1 AT1G62980 52.479 242 109 5 6 242 10 250 4.07e-85 254
MS.gene006796.t1 AT3G03220 52.679 224 105 1 25 247 40 263 3.76e-84 252
MS.gene006796.t1 AT3G15370 52.675 243 101 7 6 243 12 245 6.01e-82 246
MS.gene006796.t1 AT5G39260 53.846 221 94 2 25 244 45 258 7.71e-79 238
MS.gene006796.t1 AT4G38210 50.661 227 108 2 25 247 28 254 2.59e-78 237
MS.gene006796.t1 AT3G15370 47.253 273 100 8 6 243 12 275 2.30e-75 230
MS.gene006796.t1 AT4G28250 33.190 232 130 9 25 243 36 255 8.63e-28 107
MS.gene006796.t1 AT2G20750 33.047 233 132 9 25 243 40 262 4.52e-26 103
MS.gene006796.t1 AT4G28250 32.468 231 127 9 25 243 36 249 1.96e-24 98.2
MS.gene006796.t1 AT1G65680 30.901 233 134 10 25 242 47 267 7.65e-23 94.4
MS.gene006796.t1 AT1G65681 29.954 217 127 9 39 242 12 216 3.47e-19 83.6
MS.gene006796.t1 AT2G45110 28.750 240 132 9 24 242 32 253 5.66e-19 83.6
MS.gene006796.t1 AT4G17030 27.203 261 161 9 2 248 4 249 1.18e-18 82.8
MS.gene006796.t1 AT4G28250 33.143 175 90 7 25 189 36 193 7.57e-17 77.0
MS.gene006796.t1 AT2G20750 31.214 173 99 6 25 186 40 203 2.11e-16 75.9
MS.gene006796.t1 AT3G60570 25.000 232 146 8 25 242 34 251 2.22e-16 76.6
MS.gene006796.t1 AT4G28250 33.140 172 88 7 25 186 36 190 3.96e-16 75.1
MS.gene006796.t1 AT3G45970 26.147 218 138 10 43 247 14 221 5.65e-14 69.7
MS.gene006796.t1 AT3G45960 29.577 213 126 10 48 247 46 247 1.60e-13 68.6
MS.gene006796.t1 AT4G38400 27.830 212 131 10 48 247 47 248 2.03e-12 65.5
MS.gene006796.t1 AT3G60570 23.832 214 135 8 43 242 4 203 2.99e-12 64.3
MS.gene006796.t1 AT3G45970 25.352 213 136 10 48 247 46 248 2.37e-11 62.8

Find 67 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGCACATGCCACCTTCTA+TGG 0.202737 4.1:+25190797 MS.gene006796:CDS
GCTCCAGCTGGATGGTCTTT+TGG 0.250334 4.1:+25191657 MS.gene006796:CDS
CACCAACCACCTTGATTGTT+TGG 0.269349 4.1:-25191185 None:intergenic
TCCAGCTGGAGCAACATTAT+TGG 0.273928 4.1:-25191646 None:intergenic
GACCATAGATGGTGCCTTCC+TGG 0.298042 4.1:+25191113 MS.gene006796:CDS
GTAGGTGGGGCTTGTGGATA+TGG 0.300951 4.1:+25190984 MS.gene006796:intron
GGATATCTATGTCAAGAAAC+TGG 0.302501 4.1:+25191538 MS.gene006796:CDS
TTCCATACCCTTGACTATAA+AGG 0.310459 4.1:-25191010 None:intergenic
GGCTTACATTGGCTTGCTTT+TGG 0.310735 4.1:+25190721 MS.gene006796:CDS
GGTATAAGGTTCACTATTAA+TGG 0.324866 4.1:+25191426 MS.gene006796:CDS
GTGGCTCTTGCTATGAAATT+AGG 0.339101 4.1:+25191081 MS.gene006796:CDS
CAAGAAACTGGGGACAAAAT+TGG 0.340071 4.1:+25191550 MS.gene006796:CDS
TTCTCCTCTGTTTATGCCTA+TGG 0.366961 4.1:+25190761 MS.gene006796:CDS
TCCAATAATGTTGCTCCAGC+TGG 0.392823 4.1:+25191645 MS.gene006796:CDS
AACCAGGAAGGCACCATCTA+TGG 0.400538 4.1:-25191115 None:intergenic
TTGTTTGGTAAGGCATTGTT+TGG 0.404496 4.1:-25191170 None:intergenic
ATCACAAACGTTGGTGGTGC+TGG 0.417253 4.1:+25191474 MS.gene006796:CDS
TATGGAGGAAGTGATGCTTC+AGG 0.438776 4.1:+25190815 MS.gene006796:CDS
AGCATCACTTCCTCCATAGA+AGG 0.449496 4.1:-25190810 None:intergenic
AGGGTGTCATGCAGAAGAAA+GGG 0.474428 4.1:+25191402 MS.gene006796:intron
TAGGGTGTCATGCAGAAGAA+AGG 0.498929 4.1:+25191401 MS.gene006796:intron
CAGAGCAACAATTATCTCAA+TGG 0.508519 4.1:+25191573 MS.gene006796:CDS
AACCTTTATAGTCAAGGGTA+TGG 0.513145 4.1:+25191008 MS.gene006796:CDS
TCTGTTTATGCCTATGGTGG+AGG 0.513461 4.1:+25190767 MS.gene006796:CDS
CGTATTGCTCAATACAAAGC+TGG 0.513556 4.1:+25191254 MS.gene006796:CDS
AGTGATGCTTCAGGAACAAT+GGG 0.514794 4.1:+25190824 MS.gene006796:CDS
TCCTCTGTTTATGCCTATGG+TGG 0.517540 4.1:+25190764 MS.gene006796:CDS
ACCACCTTGATTGTTTGGTA+AGG 0.522218 4.1:-25191180 None:intergenic
TTTGGTAAGGCATTGTTTGG+AGG 0.522270 4.1:-25191167 None:intergenic
GTTGAGCAAGATCAAAATGT+TGG 0.527634 4.1:-25191220 None:intergenic
TTTAAGGTTACAACTAGTGA+TGG 0.529102 4.1:+25191609 MS.gene006796:CDS
ACCTACCTTCTAAAATCTAC+AGG 0.533353 4.1:-25191284 None:intergenic
AAACAGGAAATGGCTTACAT+TGG 0.533906 4.1:+25190710 None:intergenic
GTTCTTATCACAAACGTTGG+TGG 0.543313 4.1:+25191468 MS.gene006796:CDS
TACATGCTGCATCCATCAAA+GGG 0.543754 4.1:+25191502 MS.gene006796:CDS
TATGGTAACCTTTATAGTCA+AGG 0.546440 4.1:+25191002 MS.gene006796:CDS
TTCAACAATGGCTTAAGCTG+TGG 0.546607 4.1:+25191062 MS.gene006796:CDS
GATCAAAATGTTGGAGAGGA+GGG 0.550651 4.1:-25191211 None:intergenic
GTTTGGAGGACAGAAATTTG+TGG 0.554497 4.1:-25191153 None:intergenic
AAGTGATGCTTCAGGAACAA+TGG 0.556486 4.1:+25190823 MS.gene006796:CDS
GTACATGCTGCATCCATCAA+AGG 0.567778 4.1:+25191501 MS.gene006796:CDS
TGACCAAAAGACCATCCAGC+TGG 0.568697 4.1:-25191660 None:intergenic
GATATCTATGTCAAGAAACT+GGG 0.570919 4.1:+25191539 MS.gene006796:CDS
TTTATGCCTATGGTGGAGGA+TGG 0.581237 4.1:+25190771 MS.gene006796:CDS
AGATCAAAATGTTGGAGAGG+AGG 0.586254 4.1:-25191212 None:intergenic
ATGGTAACCTTTATAGTCAA+GGG 0.589746 4.1:+25191003 MS.gene006796:CDS
ATAATGTTGCTCCAGCTGGA+TGG 0.590574 4.1:+25191649 MS.gene006796:CDS
GTGCCTTCCTGGTTCCATTG+TGG 0.591922 4.1:+25191124 MS.gene006796:CDS
TACCAAACAATCAAGGTGGT+TGG 0.598522 4.1:+25191183 MS.gene006796:CDS
ATTAGTCCATCCTCCACCAT+AGG 0.598598 4.1:-25190777 None:intergenic
GCAGTGACCACAATGGAACC+AGG 0.602351 4.1:-25191131 None:intergenic
TTAGTTCTTATCACAAACGT+TGG 0.605020 4.1:+25191465 MS.gene006796:CDS
GGGTGTCATGCAGAAGAAAG+GGG 0.608021 4.1:+25191403 MS.gene006796:intron
AATGCCTTACCAAACAATCA+AGG 0.612141 4.1:+25191176 MS.gene006796:CDS
GAGGATTTGAGCACCAGTGT+AGG 0.625146 4.1:-25191685 None:intergenic
GGTGTGCTAATGACCATAGA+TGG 0.625411 4.1:+25191102 MS.gene006796:CDS
GGTGTCATGCAGAAGAAAGG+GGG 0.628611 4.1:+25191404 MS.gene006796:CDS
GCAAGATCAAAATGTTGGAG+AGG 0.641783 4.1:-25191215 None:intergenic
ATCACTTCCTCCATAGAAGG+TGG 0.643748 4.1:-25190807 None:intergenic
GCACATGCCACCTTCTATGG+AGG 0.644186 4.1:+25190800 MS.gene006796:CDS
GAAAAGTGCTGTACTCAAAG+CGG 0.652141 4.1:-25191042 None:intergenic
TGACCACAATGGAACCAGGA+AGG 0.676921 4.1:-25191127 None:intergenic
ATTTGTGGCAGTGACCACAA+TGG 0.706109 4.1:-25191138 None:intergenic
ATATCTATGTCAAGAAACTG+GGG 0.706710 4.1:+25191540 MS.gene006796:CDS
GTGTCATGCAGAAGAAAGGG+GGG 0.710137 4.1:+25191405 MS.gene006796:CDS
GCCTTACCAAACAATCAAGG+TGG 0.713350 4.1:+25191179 MS.gene006796:CDS
TCCACCATAGGCATAAACAG+AGG 0.739179 4.1:-25190765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTCAATTTTTTTGTATT+TGG + chr4.1:25191340-25191359 MS.gene006796:intron 10.0%
!! ATATAAAAAATGTAGATGCT+TGG - chr4.1:25191318-25191337 None:intergenic 20.0%
!!! ACTAATTTGTGTTTTTATTG+CGG + chr4.1:25191368-25191387 MS.gene006796:intron 20.0%
!!! TAGTGGTTTTTATTGAAAAA+TGG - chr4.1:25190856-25190875 None:intergenic 20.0%
!! CAAAACTTTATTTCAAGTAG+TGG - chr4.1:25190873-25190892 None:intergenic 25.0%
AAACAACAAAGTCAGTGAAA+TGG - chr4.1:25190959-25190978 None:intergenic 30.0%
AACAACAAAGTCAGTGAAAT+GGG - chr4.1:25190958-25190977 None:intergenic 30.0%
ATATCTATGTCAAGAAACTG+GGG + chr4.1:25191540-25191559 MS.gene006796:CDS 30.0%
ATGGTAACCTTTATAGTCAA+GGG + chr4.1:25191003-25191022 MS.gene006796:CDS 30.0%
GATATCTATGTCAAGAAACT+GGG + chr4.1:25191539-25191558 MS.gene006796:CDS 30.0%
GGTATAAGGTTCACTATTAA+TGG + chr4.1:25191426-25191445 MS.gene006796:CDS 30.0%
TATGGTAACCTTTATAGTCA+AGG + chr4.1:25191002-25191021 MS.gene006796:CDS 30.0%
! TGGTCAAAGTTTGTCTTTTA+AGG + chr4.1:25191593-25191612 MS.gene006796:CDS 30.0%
! TTAGTTCTTATCACAAACGT+TGG + chr4.1:25191465-25191484 MS.gene006796:CDS 30.0%
! TTGTTCCTGTAGATTTTAGA+AGG + chr4.1:25191279-25191298 MS.gene006796:CDS 30.0%
! TTTAAGGTTACAACTAGTGA+TGG + chr4.1:25191609-25191628 MS.gene006796:CDS 30.0%
!!! GACTTTGTTGTTTTTTGTGT+AGG + chr4.1:25190966-25190985 MS.gene006796:intron 30.0%
!!! TTGTTGTTTTTTGTGTAGGT+GGG + chr4.1:25190970-25190989 MS.gene006796:intron 30.0%
!!! TTTGTTGTTTTTTGTGTAGG+TGG + chr4.1:25190969-25190988 MS.gene006796:intron 30.0%
AACCTTTATAGTCAAGGGTA+TGG + chr4.1:25191008-25191027 MS.gene006796:CDS 35.0%
AATGCCTTACCAAACAATCA+AGG + chr4.1:25191176-25191195 MS.gene006796:CDS 35.0%
CAGAGCAACAATTATCTCAA+TGG + chr4.1:25191573-25191592 MS.gene006796:CDS 35.0%
GGATATCTATGTCAAGAAAC+TGG + chr4.1:25191538-25191557 MS.gene006796:CDS 35.0%
GTTGAGCAAGATCAAAATGT+TGG - chr4.1:25191223-25191242 None:intergenic 35.0%
TATTGCGGTGAATTTGTGTA+GGG + chr4.1:25191383-25191402 MS.gene006796:intron 35.0%
TGAGCAATACGAAGAAAAAC+AGG - chr4.1:25191245-25191264 None:intergenic 35.0%
TTATTGCGGTGAATTTGTGT+AGG + chr4.1:25191382-25191401 MS.gene006796:intron 35.0%
TTCCATACCCTTGACTATAA+AGG - chr4.1:25191013-25191032 None:intergenic 35.0%
! AGTACAGCACTTTTCAACAA+TGG + chr4.1:25191050-25191069 MS.gene006796:CDS 35.0%
!! ACCTACCTTCTAAAATCTAC+AGG - chr4.1:25191287-25191306 None:intergenic 35.0%
!! TCCTGTAGATTTTAGAAGGT+AGG + chr4.1:25191283-25191302 MS.gene006796:intron 35.0%
!! TTGTTTGGTAAGGCATTGTT+TGG - chr4.1:25191173-25191192 None:intergenic 35.0%
!!! TGTTGTTTTTTGTGTAGGTG+GGG + chr4.1:25190971-25190990 MS.gene006796:intron 35.0%
AAGTGATGCTTCAGGAACAA+TGG + chr4.1:25190823-25190842 MS.gene006796:CDS 40.0%
ACCACCTTGATTGTTTGGTA+AGG - chr4.1:25191183-25191202 None:intergenic 40.0%
AGATCAAAATGTTGGAGAGG+AGG - chr4.1:25191215-25191234 None:intergenic 40.0%
AGTGATGCTTCAGGAACAAT+GGG + chr4.1:25190824-25190843 MS.gene006796:CDS 40.0%
CAAGAAACTGGGGACAAAAT+TGG + chr4.1:25191550-25191569 MS.gene006796:CDS 40.0%
CGTATTGCTCAATACAAAGC+TGG + chr4.1:25191254-25191273 MS.gene006796:CDS 40.0%
GATCAAAATGTTGGAGAGGA+GGG - chr4.1:25191214-25191233 None:intergenic 40.0%
GCAAGATCAAAATGTTGGAG+AGG - chr4.1:25191218-25191237 None:intergenic 40.0%
GTTCTTATCACAAACGTTGG+TGG + chr4.1:25191468-25191487 MS.gene006796:CDS 40.0%
GTTTGGAGGACAGAAATTTG+TGG - chr4.1:25191156-25191175 None:intergenic 40.0%
TACATGCTGCATCCATCAAA+GGG + chr4.1:25191502-25191521 MS.gene006796:CDS 40.0%
TACCAAACAATCAAGGTGGT+TGG + chr4.1:25191183-25191202 MS.gene006796:CDS 40.0%
TCAAAGGGTCAAAAACTGGT+TGG + chr4.1:25191517-25191536 MS.gene006796:CDS 40.0%
TCCATCAAAGGGTCAAAAAC+TGG + chr4.1:25191513-25191532 MS.gene006796:CDS 40.0%
TTCAACAATGGCTTAAGCTG+TGG + chr4.1:25191062-25191081 MS.gene006796:CDS 40.0%
TTCTCCTCTGTTTATGCCTA+TGG + chr4.1:25190761-25190780 MS.gene006796:CDS 40.0%
! ACCAGTTTTTGACCCTTTGA+TGG - chr4.1:25191517-25191536 None:intergenic 40.0%
! GTGGCTCTTGCTATGAAATT+AGG + chr4.1:25191081-25191100 MS.gene006796:CDS 40.0%
! TCTTTTGGTCAAACCTACAC+TGG + chr4.1:25191672-25191691 MS.gene006796:CDS 40.0%
!! GAAAAGTGCTGTACTCAAAG+CGG - chr4.1:25191045-25191064 None:intergenic 40.0%
!! TTTGGTAAGGCATTGTTTGG+AGG - chr4.1:25191170-25191189 None:intergenic 40.0%
AATGCACATGCCACCTTCTA+TGG + chr4.1:25190797-25190816 MS.gene006796:CDS 45.0%
AGCATCACTTCCTCCATAGA+AGG - chr4.1:25190813-25190832 None:intergenic 45.0%
ATAATGTTGCTCCAGCTGGA+TGG + chr4.1:25191649-25191668 MS.gene006796:CDS 45.0%
ATCACTTCCTCCATAGAAGG+TGG - chr4.1:25190810-25190829 None:intergenic 45.0%
ATTAGTCCATCCTCCACCAT+AGG - chr4.1:25190780-25190799 None:intergenic 45.0%
ATTTGTGGCAGTGACCACAA+TGG - chr4.1:25191141-25191160 None:intergenic 45.0%
CACCAACCACCTTGATTGTT+TGG - chr4.1:25191188-25191207 None:intergenic 45.0%
GCCTTACCAAACAATCAAGG+TGG + chr4.1:25191179-25191198 MS.gene006796:CDS 45.0%
GGTGTGCTAATGACCATAGA+TGG + chr4.1:25191102-25191121 MS.gene006796:CDS 45.0%
GTACATGCTGCATCCATCAA+AGG + chr4.1:25191501-25191520 MS.gene006796:CDS 45.0%
TATGGAGGAAGTGATGCTTC+AGG + chr4.1:25190815-25190834 MS.gene006796:CDS 45.0%
TCCAATAATGTTGCTCCAGC+TGG + chr4.1:25191645-25191664 MS.gene006796:CDS 45.0%
TCCACCATAGGCATAAACAG+AGG - chr4.1:25190768-25190787 None:intergenic 45.0%
TCCAGCTGGAGCAACATTAT+TGG - chr4.1:25191649-25191668 None:intergenic 45.0%
TCCTCTGTTTATGCCTATGG+TGG + chr4.1:25190764-25190783 MS.gene006796:CDS 45.0%
TCTGTTTATGCCTATGGTGG+AGG + chr4.1:25190767-25190786 MS.gene006796:CDS 45.0%
! AGGGTGTCATGCAGAAGAAA+GGG + chr4.1:25191402-25191421 MS.gene006796:intron 45.0%
! TAGGGTGTCATGCAGAAGAA+AGG + chr4.1:25191401-25191420 MS.gene006796:intron 45.0%
! TTTATGCCTATGGTGGAGGA+TGG + chr4.1:25190771-25190790 MS.gene006796:CDS 45.0%
!!! GGCTTACATTGGCTTGCTTT+TGG + chr4.1:25190721-25190740 MS.gene006796:CDS 45.0%
GAGGATTTGAGCACCAGTGT+AGG - chr4.1:25191688-25191707 None:intergenic 50.0%
GTGTCATGCAGAAGAAAGGG+GGG + chr4.1:25191405-25191424 MS.gene006796:CDS 50.0%
TGACCAAAAGACCATCCAGC+TGG - chr4.1:25191663-25191682 None:intergenic 50.0%
TGACCACAATGGAACCAGGA+AGG - chr4.1:25191130-25191149 None:intergenic 50.0%
! GCAGAAGAAAGGGGGGTATA+AGG + chr4.1:25191412-25191431 MS.gene006796:CDS 50.0%
! GGGTGTCATGCAGAAGAAAG+GGG + chr4.1:25191403-25191422 MS.gene006796:intron 50.0%
! GGTGTCATGCAGAAGAAAGG+GGG + chr4.1:25191404-25191423 MS.gene006796:CDS 50.0%
! TTTTGTGTAGGTGGGGCTTG+TGG + chr4.1:25190978-25190997 MS.gene006796:intron 50.0%
!! AACCAGGAAGGCACCATCTA+TGG - chr4.1:25191118-25191137 None:intergenic 50.0%
!! ATCACAAACGTTGGTGGTGC+TGG + chr4.1:25191474-25191493 MS.gene006796:CDS 50.0%
GACCATAGATGGTGCCTTCC+TGG + chr4.1:25191113-25191132 MS.gene006796:CDS 55.0%
GCACATGCCACCTTCTATGG+AGG + chr4.1:25190800-25190819 MS.gene006796:CDS 55.0%
GCAGTGACCACAATGGAACC+AGG - chr4.1:25191134-25191153 None:intergenic 55.0%
GTAGGTGGGGCTTGTGGATA+TGG + chr4.1:25190984-25191003 MS.gene006796:intron 55.0%
GTGCCTTCCTGGTTCCATTG+TGG + chr4.1:25191124-25191143 MS.gene006796:CDS 55.0%
! GCTCCAGCTGGATGGTCTTT+TGG + chr4.1:25191657-25191676 MS.gene006796:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 25190719 25191710 25190719 ID=MS.gene006796
chr4.1 mRNA 25190719 25191710 25190719 ID=MS.gene006796.t1;Parent=MS.gene006796
chr4.1 exon 25190719 25190845 25190719 ID=MS.gene006796.t1.exon1;Parent=MS.gene006796.t1
chr4.1 CDS 25190719 25190845 25190719 ID=cds.MS.gene006796.t1;Parent=MS.gene006796.t1
chr4.1 exon 25190988 25191300 25190988 ID=MS.gene006796.t1.exon2;Parent=MS.gene006796.t1
chr4.1 CDS 25190988 25191300 25190988 ID=cds.MS.gene006796.t1;Parent=MS.gene006796.t1
chr4.1 exon 25191404 25191710 25191404 ID=MS.gene006796.t1.exon3;Parent=MS.gene006796.t1
chr4.1 CDS 25191404 25191710 25191404 ID=cds.MS.gene006796.t1;Parent=MS.gene006796.t1
Gene Sequence

>MS.gene006796

ATGGCTTACATTGGCTTGCTTTTGGTGTGTTCTCTCACTATGTTCTCCTCTGTTTATGCCTATGGTGGAGGATGGACTAATGCACATGCCACCTTCTATGGAGGAAGTGATGCTTCAGGAACAATGGGTATGCACCATTTTTCAATAAAAACCACTACTTGAAATAAAGTTTTGATTTTTAAGCTTTTTTGTAAAAAAAAAAAAAAAAAACAGATCTTGAAGCAAAAAACAAGTAACCCATTTCACTGACTTTGTTGTTTTTTGTGTAGGTGGGGCTTGTGGATATGGTAACCTTTATAGTCAAGGGTATGGAACAAACACTGCCGCTTTGAGTACAGCACTTTTCAACAATGGCTTAAGCTGTGGCTCTTGCTATGAAATTAGGTGTGCTAATGACCATAGATGGTGCCTTCCTGGTTCCATTGTGGTCACTGCCACAAATTTCTGTCCTCCAAACAATGCCTTACCAAACAATCAAGGTGGTTGGTGTAACCCTCCTCTCCAACATTTTGATCTTGCTCAACCTGTTTTTCTTCGTATTGCTCAATACAAAGCTGGAATTGTTCCTGTAGATTTTAGAAGGTAGGTTGCTTTTACCAAGCATCTACATTTTTTATATAAATTTTCAATTTTTTTGTATTTGGTATAAACTAATTTGTGTTTTTATTGCGGTGAATTTGTGTAGGGTGTCATGCAGAAGAAAGGGGGGTATAAGGTTCACTATTAATGGACATTCTTACTTTAACTTAGTTCTTATCACAAACGTTGGTGGTGCTGGAGATGTACATGCTGCATCCATCAAAGGGTCAAAAACTGGTTGGATATCTATGTCAAGAAACTGGGGACAAAATTGGCAGAGCAACAATTATCTCAATGGTCAAAGTTTGTCTTTTAAGGTTACAACTAGTGATGGTCGTACTGTTGTTTCCAATAATGTTGCTCCAGCTGGATGGTCTTTTGGTCAAACCTACACTGGTGCTCAAATCCTCTAG
Protein sequence

>MS.gene006796.t1

MAYIGLLLVCSLTMFSSVYAYGGGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCANDHRWCLPGSIVVTATNFCPPNNALPNNQGGWCNPPLQHFDLAQPVFLRIAQYKAGIVPVDFRRVSCRRKGGIRFTINGHSYFNLVLITNVGGAGDVHAASIKGSKTGWISMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSNNVAPAGWSFGQTYTGAQIL