AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene24107

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24107.t1 MTR_1g026020 98.824 255 3 0 1 255 1 255 0.0 523
MS.gene24107.t1 MTR_7g111010 63.347 251 91 1 6 255 4 254 9.84e-121 345
MS.gene24107.t1 MTR_1g085460 68.103 232 73 1 25 255 26 257 1.14e-120 345
MS.gene24107.t1 MTR_7g110990 67.982 228 72 1 29 255 12 239 5.42e-119 340
MS.gene24107.t1 MTR_3g094060 68.000 225 69 2 28 252 30 251 6.41e-116 332
MS.gene24107.t1 MTR_3g094040 63.454 249 86 3 2 250 6 249 6.41e-116 332
MS.gene24107.t1 MTR_4g081950 63.855 249 85 4 3 250 35 279 2.92e-115 332
MS.gene24107.t1 MTR_5g041700 61.382 246 92 2 5 250 1 243 1.11e-112 324
MS.gene24107.t1 MTR_5g075320 63.265 245 82 3 10 249 5 246 1.75e-111 321
MS.gene24107.t1 MTR_3g435430 64.912 228 76 3 28 255 24 247 1.30e-110 318
MS.gene24107.t1 MTR_7g061720 65.778 225 74 2 29 252 32 254 1.34e-108 314
MS.gene24107.t1 MTR_5g079950 64.069 231 80 2 23 252 27 255 2.47e-108 313
MS.gene24107.t1 MTR_3g466760 64.463 242 81 3 10 249 17 255 4.07e-107 310
MS.gene24107.t1 MTR_3g466790 64.463 242 81 3 10 249 11 249 5.43e-107 310
MS.gene24107.t1 MTR_2g097030 57.812 256 102 3 1 252 3 256 2.29e-106 308
MS.gene24107.t1 MTR_7g011060 58.400 250 90 5 5 252 1 238 1.61e-101 295
MS.gene24107.t1 MTR_4g063975 58.498 253 101 3 1 252 5 254 3.13e-97 285
MS.gene24107.t1 MTR_6g012520 58.167 251 91 4 5 252 1 240 3.66e-95 279
MS.gene24107.t1 MTR_7g013150 56.140 228 95 3 29 255 30 253 9.38e-91 268
MS.gene24107.t1 MTR_7g013120 55.459 229 96 4 29 255 29 253 1.11e-90 268
MS.gene24107.t1 MTR_8g464350 55.652 230 97 3 27 255 29 254 3.09e-89 265
MS.gene24107.t1 MTR_8g058990 52.609 230 104 3 27 255 28 253 4.42e-86 256
MS.gene24107.t1 MTR_7g013140 50.980 255 117 4 5 255 1 251 3.15e-85 254
MS.gene24107.t1 MTR_5g011210 49.801 251 119 5 7 255 17 262 2.14e-84 253
MS.gene24107.t1 MTR_4g124340 48.511 235 115 4 20 252 52 282 3.93e-81 245
MS.gene24107.t1 MTR_4g102450 48.016 252 126 3 5 255 14 261 3.57e-80 242
MS.gene24107.t1 MTR_5g076950 50.893 224 108 1 29 252 41 262 2.40e-79 240
MS.gene24107.t1 MTR_3g064510 48.707 232 113 4 27 252 51 282 5.28e-74 227
MS.gene24107.t1 MTR_0040s0140 43.529 255 135 5 1 252 6 254 3.10e-73 224
MS.gene24107.t1 MTR_2g090255 41.365 249 140 3 5 252 7 250 8.76e-70 215
MS.gene24107.t1 MTR_0008s0120 53.571 112 52 0 144 255 88 199 2.22e-36 128
MS.gene24107.t1 MTR_0008s0120 63.793 58 21 0 27 84 30 87 3.85e-17 77.8
MS.gene24107.t1 MTR_6g012500 55.102 98 44 0 155 252 181 278 4.28e-35 127
MS.gene24107.t1 MTR_2g090270 30.544 239 139 9 29 255 35 258 1.73e-28 109
MS.gene24107.t1 MTR_0122s0020 31.799 239 136 10 29 255 41 264 3.15e-27 106
MS.gene24107.t1 MTR_2g090265 29.368 269 153 11 4 255 8 256 5.49e-27 105
MS.gene24107.t1 MTR_0809s0010 30.290 241 139 13 24 251 42 266 1.51e-20 88.2
MS.gene24107.t1 MTR_4g028640 27.839 273 152 12 7 255 13 264 3.47e-20 87.4
MS.gene24107.t1 MTR_1g085365 64.286 56 20 0 198 253 3 58 1.38e-19 80.1
MS.gene24107.t1 MTR_0118s0070 28.452 239 138 12 34 255 53 275 1.47e-17 80.1
MS.gene24107.t1 MTR_4g099370 24.803 254 169 11 12 255 9 250 1.52e-16 77.0
MS.gene24107.t1 MTR_0122s0020 32.386 176 93 8 29 193 41 201 1.22e-15 73.9
MS.gene24107.t1 MTR_5g013440 24.242 231 157 9 32 255 32 251 4.09e-15 73.2
MS.gene24107.t1 MTR_4g075790 27.111 225 142 9 40 255 32 243 1.79e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene24107.t1 AT1G20190 78.541 233 50 0 23 255 20 252 1.26e-141 397
MS.gene24107.t1 AT4G01630 63.672 256 91 2 1 255 1 255 1.32e-119 342
MS.gene24107.t1 AT1G20190 78.125 192 42 0 64 255 2 193 3.59e-116 331
MS.gene24107.t1 AT2G37640 68.000 225 69 2 29 252 36 258 1.25e-112 324
MS.gene24107.t1 AT1G69530 60.800 250 93 3 1 250 1 245 1.71e-112 323
MS.gene24107.t1 AT1G69530 60.800 250 93 3 1 250 1 245 1.71e-112 323
MS.gene24107.t1 AT1G69530 60.317 252 95 3 1 252 1 247 1.83e-112 324
MS.gene24107.t1 AT5G05290 60.800 250 92 4 2 250 7 251 4.00e-112 323
MS.gene24107.t1 AT2G40610 66.816 223 70 3 28 249 29 248 7.39e-111 320
MS.gene24107.t1 AT2G03090 60.000 250 93 4 5 252 6 250 8.66e-110 317
MS.gene24107.t1 AT2G39700 64.783 230 78 2 24 252 26 253 1.17e-109 317
MS.gene24107.t1 AT5G56320 59.200 250 96 3 3 252 6 249 1.36e-107 311
MS.gene24107.t1 AT5G56320 59.200 250 96 3 3 252 6 249 1.36e-107 311
MS.gene24107.t1 AT5G02260 57.874 254 100 4 3 252 4 254 6.88e-107 310
MS.gene24107.t1 AT5G56320 59.200 250 96 3 3 252 6 249 9.13e-107 311
MS.gene24107.t1 AT3G55500 62.771 231 83 2 23 252 28 256 2.22e-106 308
MS.gene24107.t1 AT2G28950 60.400 250 95 3 4 252 7 253 2.86e-105 305
MS.gene24107.t1 AT1G26770 60.000 250 94 3 1 250 1 244 9.74e-105 304
MS.gene24107.t1 AT1G26770 60.000 250 94 3 1 250 11 254 1.49e-104 304
MS.gene24107.t1 AT3G29030 61.261 222 76 2 29 250 38 249 9.68e-103 299
MS.gene24107.t1 AT2G37640 65.865 208 68 2 46 252 28 233 5.26e-100 291
MS.gene24107.t1 AT1G69530 57.576 231 91 4 1 231 1 224 4.78e-95 279
MS.gene24107.t1 AT1G69530 61.321 212 77 3 1 212 1 207 2.43e-94 276
MS.gene24107.t1 AT3G15370 50.781 256 106 6 1 252 8 247 1.77e-90 268
MS.gene24107.t1 AT5G39310 52.174 230 104 4 27 255 88 312 3.08e-87 262
MS.gene24107.t1 AT5G39290 54.185 227 99 3 29 255 58 279 5.21e-87 260
MS.gene24107.t1 AT5G39270 53.275 229 102 3 27 255 56 279 9.28e-87 259
MS.gene24107.t1 AT5G39300 51.965 229 105 3 27 255 53 276 2.56e-86 258
MS.gene24107.t1 AT5G39280 52.402 229 104 3 27 255 52 275 3.83e-86 258
MS.gene24107.t1 AT3G15370 45.455 286 106 7 1 252 8 277 6.06e-84 252
MS.gene24107.t1 AT1G12560 50.644 233 111 3 24 255 32 261 1.02e-83 251
MS.gene24107.t1 AT3G03220 49.107 224 112 1 29 252 40 261 1.36e-75 230
MS.gene24107.t1 AT1G62980 44.488 254 135 4 3 255 8 256 2.86e-75 229
MS.gene24107.t1 AT5G39260 49.565 230 105 4 27 255 43 262 1.46e-72 223
MS.gene24107.t1 AT4G38210 40.891 247 138 4 12 252 8 252 1.00e-62 197
MS.gene24107.t1 AT4G28250 29.851 268 160 9 1 255 8 260 1.59e-30 114
MS.gene24107.t1 AT2G20750 34.252 254 138 13 17 255 28 267 2.68e-29 111
MS.gene24107.t1 AT4G28250 28.839 267 158 9 1 255 8 254 3.41e-27 105
MS.gene24107.t1 AT1G65680 28.740 254 151 11 17 255 35 273 5.38e-22 92.4
MS.gene24107.t1 AT2G20750 34.043 188 101 8 17 193 28 203 4.10e-19 83.6
MS.gene24107.t1 AT4G28250 27.885 208 120 7 1 198 8 195 1.82e-17 79.0
MS.gene24107.t1 AT2G45110 26.172 256 156 10 16 255 21 259 1.18e-16 77.4
MS.gene24107.t1 AT4G28250 28.079 203 116 7 1 193 8 190 1.23e-16 76.6
MS.gene24107.t1 AT3G60570 23.482 247 160 7 22 255 27 257 1.76e-15 74.3
MS.gene24107.t1 AT4G17030 25.106 235 158 8 26 253 24 247 2.66e-15 73.6
MS.gene24107.t1 AT1G65681 24.444 225 142 9 44 255 13 222 3.13e-15 72.8
MS.gene24107.t1 AT3G45960 26.818 220 127 11 52 255 46 247 4.04e-12 65.1
MS.gene24107.t1 AT4G38400 25.581 215 136 9 52 255 47 248 4.07e-12 65.1
MS.gene24107.t1 AT3G45960 27.830 212 119 12 60 255 6 199 4.41e-11 61.2
MS.gene24107.t1 AT3G60570 23.318 223 140 8 47 255 4 209 7.36e-11 60.8

Find 66 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACCAAAGTTATGTTTATTT+TGG 0.046470 1.2:+285328 MS.gene24107:CDS
ATCCAATCTGTTTCCATTAA+AGG 0.093347 1.2:+286845 MS.gene24107:CDS
GTTCCTTCCAATTGGGAATT+TGG 0.137567 1.2:+287001 MS.gene24107:CDS
GGATGGCTATGTCAAGAAAT+TGG 0.226118 1.2:+286882 MS.gene24107:CDS
TCCTATGCCTTCAAAGCTTC+TGG 0.234899 1.2:+285386 MS.gene24107:CDS
AATTGGAAGGAACAATGTTT+TGG 0.262015 1.2:-286991 None:intergenic
CATAGCCATCCAATCAGTTT+TGG 0.278389 1.2:-286870 None:intergenic
GACCCAAGATGGTGCATAAA+AGG 0.304165 1.2:+285846 MS.gene24107:CDS
TCGTTTGGAAGATCAAAATT+TGG 0.307168 1.2:-285906 None:intergenic
CAAGAAATTGGGGTGCAAAT+TGG 0.319801 1.2:+286894 MS.gene24107:CDS
AAAACATTGTTCCTTCCAAT+TGG 0.325428 1.2:+286993 MS.gene24107:CDS
ACAGAAATTTGTGGCTGTTA+TGG 0.346098 1.2:-285880 None:intergenic
GCCATATCAAAATGCTTTAG+AGG 0.358797 1.2:-285951 None:intergenic
CAATCTAATGCTTATTTGAA+TGG 0.361539 1.2:+286917 MS.gene24107:CDS
CACCATCCTCCATCGTCGTT+TGG 0.370587 1.2:-285921 None:intergenic
GCAGGAGGAGCTTGTGGTTA+TGG 0.372980 1.2:+285711 MS.gene24107:intron
AACCTTTAATGGAAACAGAT+TGG 0.387190 1.2:-286847 None:intergenic
TATGGAAATCTATATTCAAC+GGG 0.392318 1.2:+285729 MS.gene24107:CDS
AGTACTGCTTTGTTTAATGA+TGG 0.399136 1.2:+285777 MS.gene24107:CDS
AATCTATATTCAACGGGGTA+TGG 0.399794 1.2:+285735 MS.gene24107:CDS
TTAAAGGTTCCAAAACTGAT+TGG 0.401631 1.2:+286861 MS.gene24107:CDS
TGATATGGCACAACCTGCTT+GGG 0.402518 1.2:+285965 MS.gene24107:CDS
AAACATTGTTCCTTCCAATT+GGG 0.415555 1.2:+286994 MS.gene24107:CDS
ATCAGCAATCTGGCTGGTGC+TGG 0.426311 1.2:+286818 MS.gene24107:CDS
GGAGTTAGGTTCAGTGTGAA+TGG 0.426417 1.2:+286770 MS.gene24107:CDS
GATGGCTATGTCAAGAAATT+GGG 0.440562 1.2:+286883 MS.gene24107:CDS
TAGTGACGCAGAAGGCACTA+TGG 0.446763 1.2:+285442 MS.gene24107:CDS
GGTCCATCCAGAAGCTTTGA+AGG 0.448252 1.2:-285393 None:intergenic
TTGATATGGCACAACCTGCT+TGG 0.457983 1.2:+285964 MS.gene24107:CDS
ATCAGTAGTTGTGACCTTGA+AGG 0.458996 1.2:-286951 None:intergenic
CAACCTGCTTGGGAAAAGAT+TGG 0.464220 1.2:+285975 MS.gene24107:CDS
GGATCTTGCTAGAGAAAGAT+TGG 0.465897 1.2:-287024 None:intergenic
GTTAGTGTTGATCAGCAATC+TGG 0.470023 1.2:+286808 MS.gene24107:CDS
TGGTCAATCTATGTCCTTCA+AGG 0.475974 1.2:+286937 MS.gene24107:CDS
AGATTGGCCAAATTCCCAAT+TGG 0.482710 1.2:-287008 None:intergenic
TCTAACCTTTGGAATAAGAC+AGG 0.485412 1.2:-286020 None:intergenic
ATCTATATTCAACGGGGTAT+GGG 0.496489 1.2:+285736 MS.gene24107:CDS
GCCCAAAATAAACATAACTT+TGG 0.499632 1.2:-285330 None:intergenic
ATTTGGAGGACAGAAATTTG+TGG 0.505739 1.2:-285889 None:intergenic
TTCAAGGTCACAACTACTGA+TGG 0.534151 1.2:+286953 MS.gene24107:CDS
AGGTTCCAAAACTGATTGGA+TGG 0.535558 1.2:+286865 MS.gene24107:CDS
TTTGGAAGATCAAAATTTGG+AGG 0.549026 1.2:-285903 None:intergenic
TTAGGTTCAGTGTGAATGGA+AGG 0.549239 1.2:+286774 MS.gene24107:CDS
ATTATAAGACAGACCCAAGA+TGG 0.565868 1.2:+285835 MS.gene24107:CDS
TGGCCAAATTCCCAATTGGA+AGG 0.568133 1.2:-287004 None:intergenic
TCGTCCCTGTCTTATTCCAA+AGG 0.569211 1.2:+286015 MS.gene24107:CDS
TATCAAAATGCTTTAGAGGT+GGG 0.577409 1.2:-285947 None:intergenic
AGTGACGCAGAAGGCACTAT+GGG 0.580958 1.2:+285443 MS.gene24107:CDS
GTGTTGATCAGCAATCTGGC+TGG 0.582992 1.2:+286812 MS.gene24107:CDS
TTATGGAAATCTATATTCAA+CGG 0.585825 1.2:+285728 MS.gene24107:CDS
ATGCCTTCAAAGCTTCTGGA+TGG 0.586668 1.2:+285390 MS.gene24107:CDS
TTTGATCTTCCAAACGACGA+TGG 0.587589 1.2:+285912 MS.gene24107:CDS
TTCCAAACGACGATGGAGGA+TGG 0.589231 1.2:+285919 MS.gene24107:CDS
AAGATTGGAATCTACAGAGG+AGG 0.589893 1.2:+285990 MS.gene24107:CDS
TTTAATGATGGAGCTTCATG+TGG 0.590206 1.2:+285789 MS.gene24107:CDS
CTAACCTTTGGAATAAGACA+GGG 0.602543 1.2:-286019 None:intergenic
ATATCAAAATGCTTTAGAGG+TGG 0.603348 1.2:-285948 None:intergenic
GATCTTCCAAACGACGATGG+AGG 0.615762 1.2:+285915 MS.gene24107:CDS
TGTGATGCAGGAGGAGCTTG+TGG 0.625862 1.2:+285705 MS.gene24107:intron
AGATTGGAATCTACAGAGGA+GGG 0.626103 1.2:+285991 MS.gene24107:CDS
TCCAGAAGCTTTGAAGGCAT+AGG 0.644558 1.2:-285387 None:intergenic
TAGGTTCAGTGTGAATGGAA+GGG 0.653972 1.2:+286775 MS.gene24107:CDS
GAAAAGATTGGAATCTACAG+AGG 0.666370 1.2:+285987 MS.gene24107:CDS
ATGGCTATGTCAAGAAATTG+GGG 0.694107 1.2:+286884 MS.gene24107:CDS
TTAATGATGGAGCTTCATGT+GGG 0.742051 1.2:+285790 MS.gene24107:CDS
ATGGAAATCTATATTCAACG+GGG 0.807681 1.2:+285730 MS.gene24107:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAACACAGTTTAAAAATT+GGG - chr1.2:286547-286566 None:intergenic 15.0%
!! TATATTCATTAATCATCAAA+TGG - chr1.2:286258-286277 None:intergenic 15.0%
!!! TTTATACACAAATTATGTTT+TGG + chr1.2:286363-286382 MS.gene24107:intron 15.0%
!! AGAAATAAAATGTTGAAAAG+TGG - chr1.2:285484-285503 None:intergenic 20.0%
!! ATTGGGTTAATTATGTTTAA+TGG - chr1.2:286530-286549 None:intergenic 20.0%
!! GATTAACACAGTTTAAAAAT+TGG - chr1.2:286548-286567 None:intergenic 20.0%
!! TTATGGAAATCTATATTCAA+CGG + chr1.2:285728-285747 MS.gene24107:CDS 20.0%
!!! ACCAAAGTTATGTTTATTTT+GGG + chr1.2:285329-285348 MS.gene24107:CDS 20.0%
!!! AGTTAGTTGAATATTGTTTT+AGG + chr1.2:285628-285647 MS.gene24107:intron 20.0%
!!! ATTATTTTCACAAATTGCAT+GGG - chr1.2:286637-286656 None:intergenic 20.0%
!!! ATTTAATCACTTTAAAATCG+TGG + chr1.2:286445-286464 MS.gene24107:intron 20.0%
!!! CAAATTTGAAACAATTTAGA+TGG + chr1.2:286200-286219 MS.gene24107:intron 20.0%
!!! GTTAAAGCATTTTAAATATG+TGG + chr1.2:286222-286241 MS.gene24107:intron 20.0%
! CAATCTAATGCTTATTTGAA+TGG + chr1.2:286917-286936 MS.gene24107:CDS 25.0%
! GGTTAATTATGTTTAATGGA+TGG - chr1.2:286526-286545 None:intergenic 25.0%
! TAAGATCAATGACATGTTAT+TGG + chr1.2:286141-286160 MS.gene24107:intron 25.0%
! TATGGAAATCTATATTCAAC+GGG + chr1.2:285729-285748 MS.gene24107:CDS 25.0%
! TGTTCAGTAATTTAGTAGTT+AGG + chr1.2:286686-286705 MS.gene24107:intron 25.0%
!! GACCAAAGTTATGTTTATTT+TGG + chr1.2:285328-285347 MS.gene24107:CDS 25.0%
!! GATTATTTTCACAAATTGCA+TGG - chr1.2:286638-286657 None:intergenic 25.0%
!!! TGTTTTTATATTTTTGGGCA+GGG + chr1.2:286727-286746 MS.gene24107:intron 25.0%
!!! TTATTGCACTTTTTTATGAG+AGG - chr1.2:286106-286125 None:intergenic 25.0%
!!! TTGTTTTTATATTTTTGGGC+AGG + chr1.2:286726-286745 MS.gene24107:intron 25.0%
AAAACATTGTTCCTTCCAAT+TGG + chr1.2:286993-287012 MS.gene24107:CDS 30.0%
AAACATTGTTCCTTCCAATT+GGG + chr1.2:286994-287013 MS.gene24107:CDS 30.0%
AACCTTTAATGGAAACAGAT+TGG - chr1.2:286850-286869 None:intergenic 30.0%
ATAAAAAGTTGCATGAGCAT+TGG - chr1.2:285417-285436 None:intergenic 30.0%
ATACTTGAAAATCGTCGTTA+AGG - chr1.2:286340-286359 None:intergenic 30.0%
ATCCAATCTGTTTCCATTAA+AGG + chr1.2:286845-286864 MS.gene24107:CDS 30.0%
ATGGAAATCTATATTCAACG+GGG + chr1.2:285730-285749 MS.gene24107:CDS 30.0%
CAGATCAAAATTCTAACCTT+TGG - chr1.2:286034-286053 None:intergenic 30.0%
GCCCAAAATAAACATAACTT+TGG - chr1.2:285333-285352 None:intergenic 30.0%
TACTTGAAAATCGTCGTTAA+GGG - chr1.2:286339-286358 None:intergenic 30.0%
TCGTTTGGAAGATCAAAATT+TGG - chr1.2:285909-285928 None:intergenic 30.0%
TGTGGTTAATTGTTATGAGT+GGG - chr1.2:286306-286325 None:intergenic 30.0%
TTAAAGGTTCCAAAACTGAT+TGG + chr1.2:286861-286880 MS.gene24107:CDS 30.0%
TTGTGGTTAATTGTTATGAG+TGG - chr1.2:286307-286326 None:intergenic 30.0%
TTTGGAAGATCAAAATTTGG+AGG - chr1.2:285906-285925 None:intergenic 30.0%
! AATGCTCATGCAACTTTTTA+TGG + chr1.2:285416-285435 MS.gene24107:CDS 30.0%
! AATTGGAAGGAACAATGTTT+TGG - chr1.2:286994-287013 None:intergenic 30.0%
! ATGCTCATGCAACTTTTTAT+GGG + chr1.2:285417-285436 MS.gene24107:CDS 30.0%
!! ACATGTTATTGGTAGTTTTG+AGG + chr1.2:286152-286171 MS.gene24107:intron 30.0%
!! AGTACTGCTTTGTTTAATGA+TGG + chr1.2:285777-285796 MS.gene24107:CDS 30.0%
!! ATATCAAAATGCTTTAGAGG+TGG - chr1.2:285951-285970 None:intergenic 30.0%
!! GTTAAGGGTGTTTAAAATTG+TGG - chr1.2:286324-286343 None:intergenic 30.0%
!! TATCAAAATGCTTTAGAGGT+GGG - chr1.2:285950-285969 None:intergenic 30.0%
!!! AACAATGTTTTGGAAAGTTC+TGG - chr1.2:286984-287003 None:intergenic 30.0%
!!! ACCTCTAAAGCATTTTGATA+TGG + chr1.2:285950-285969 MS.gene24107:CDS 30.0%
!!! ATCAGTTTTGGAACCTTTAA+TGG - chr1.2:286861-286880 None:intergenic 30.0%
!!! CATGTTATTGGTAGTTTTGA+GGG + chr1.2:286153-286172 MS.gene24107:intron 30.0%
AATCTATATTCAACGGGGTA+TGG + chr1.2:285735-285754 MS.gene24107:CDS 35.0%
ACAGAAATTTGTGGCTGTTA+TGG - chr1.2:285883-285902 None:intergenic 35.0%
ATCTATATTCAACGGGGTAT+GGG + chr1.2:285736-285755 MS.gene24107:CDS 35.0%
ATGGCTATGTCAAGAAATTG+GGG + chr1.2:286884-286903 MS.gene24107:CDS 35.0%
ATTATAAGACAGACCCAAGA+TGG + chr1.2:285835-285854 MS.gene24107:CDS 35.0%
ATTTGGAGGACAGAAATTTG+TGG - chr1.2:285892-285911 None:intergenic 35.0%
CATTTGAATATGTGTGATGC+AGG + chr1.2:285693-285712 MS.gene24107:intron 35.0%
GAAAAGATTGGAATCTACAG+AGG + chr1.2:285987-286006 MS.gene24107:CDS 35.0%
GATGGCTATGTCAAGAAATT+GGG + chr1.2:286883-286902 MS.gene24107:CDS 35.0%
GCCATATCAAAATGCTTTAG+AGG - chr1.2:285954-285973 None:intergenic 35.0%
TCTGTGCTACATCTTATCTT+AGG + chr1.2:286050-286069 MS.gene24107:intron 35.0%
! TGCTCATGCAACTTTTTATG+GGG + chr1.2:285418-285437 MS.gene24107:CDS 35.0%
! TTAATGATGGAGCTTCATGT+GGG + chr1.2:285790-285809 MS.gene24107:CDS 35.0%
! TTCCTTTTATGCACCATCTT+GGG - chr1.2:285851-285870 None:intergenic 35.0%
! TTTAATGATGGAGCTTCATG+TGG + chr1.2:285789-285808 MS.gene24107:CDS 35.0%
!! CTAACCTTTGGAATAAGACA+GGG - chr1.2:286022-286041 None:intergenic 35.0%
!! TCTAACCTTTGGAATAAGAC+AGG - chr1.2:286023-286042 None:intergenic 35.0%
!!! TTTATTTTGGGCACACTCAT+TGG + chr1.2:285341-285360 MS.gene24107:CDS 35.0%
AAGATTGGAATCTACAGAGG+AGG + chr1.2:285990-286009 MS.gene24107:CDS 40.0%
AGATTGGAATCTACAGAGGA+GGG + chr1.2:285991-286010 MS.gene24107:CDS 40.0%
AGGTTCCAAAACTGATTGGA+TGG + chr1.2:286865-286884 MS.gene24107:CDS 40.0%
ATCAGTAGTTGTGACCTTGA+AGG - chr1.2:286954-286973 None:intergenic 40.0%
CAAGAAATTGGGGTGCAAAT+TGG + chr1.2:286894-286913 MS.gene24107:CDS 40.0%
GGATCTTGCTAGAGAAAGAT+TGG - chr1.2:287027-287046 None:intergenic 40.0%
GGATGGCTATGTCAAGAAAT+TGG + chr1.2:286882-286901 MS.gene24107:CDS 40.0%
GGTTAATTGTTATGAGTGGG+TGG - chr1.2:286303-286322 None:intergenic 40.0%
GTTCCTTCCAATTGGGAATT+TGG + chr1.2:287001-287020 MS.gene24107:CDS 40.0%
GTTGAAAAGTGGTGTGACAA+GGG - chr1.2:285473-285492 None:intergenic 40.0%
TAGGTTCAGTGTGAATGGAA+GGG + chr1.2:286775-286794 MS.gene24107:CDS 40.0%
TGGTCAATCTATGTCCTTCA+AGG + chr1.2:286937-286956 MS.gene24107:CDS 40.0%
TGTTGAAAAGTGGTGTGACA+AGG - chr1.2:285474-285493 None:intergenic 40.0%
TTAGGTTCAGTGTGAATGGA+AGG + chr1.2:286774-286793 MS.gene24107:CDS 40.0%
TTCAAGGTCACAACTACTGA+TGG + chr1.2:286953-286972 MS.gene24107:CDS 40.0%
TTGAATATGTGTGATGCAGG+AGG + chr1.2:285696-285715 MS.gene24107:intron 40.0%
TTTGATCTTCCAAACGACGA+TGG + chr1.2:285912-285931 MS.gene24107:CDS 40.0%
! AGATTGGCCAAATTCCCAAT+TGG - chr1.2:287011-287030 None:intergenic 40.0%
! ATTCCAATCTTTTCCCAAGC+AGG - chr1.2:285981-286000 None:intergenic 40.0%
! CATAGCCATCCAATCAGTTT+TGG - chr1.2:286873-286892 None:intergenic 40.0%
! CTTCCTTTTATGCACCATCT+TGG - chr1.2:285852-285871 None:intergenic 40.0%
! GCTCATGCAACTTTTTATGG+GGG + chr1.2:285419-285438 MS.gene24107:CDS 40.0%
!! GTTAGTGTTGATCAGCAATC+TGG + chr1.2:286808-286827 MS.gene24107:CDS 40.0%
AGGGTTCCTTGCAAAAAGCA+TGG + chr1.2:286746-286765 MS.gene24107:intron 45.0%
ATGCCTTCAAAGCTTCTGGA+TGG + chr1.2:285390-285409 MS.gene24107:CDS 45.0%
CAACCTGCTTGGGAAAAGAT+TGG + chr1.2:285975-285994 MS.gene24107:CDS 45.0%
GACCCAAGATGGTGCATAAA+AGG + chr1.2:285846-285865 MS.gene24107:CDS 45.0%
GGAGTTAGGTTCAGTGTGAA+TGG + chr1.2:286770-286789 MS.gene24107:CDS 45.0%
TCCTATGCCTTCAAAGCTTC+TGG + chr1.2:285386-285405 MS.gene24107:CDS 45.0%
TGATATGGCACAACCTGCTT+GGG + chr1.2:285965-285984 MS.gene24107:CDS 45.0%
TGGCCAAATTCCCAATTGGA+AGG - chr1.2:287007-287026 None:intergenic 45.0%
TTGATATGGCACAACCTGCT+TGG + chr1.2:285964-285983 MS.gene24107:CDS 45.0%
! GCAAAAAGCATGGAGGAGTT+AGG + chr1.2:286756-286775 MS.gene24107:CDS 45.0%
! GTTCCTTGCAAAAAGCATGG+AGG + chr1.2:286749-286768 MS.gene24107:CDS 45.0%
! TCGTCCCTGTCTTATTCCAA+AGG + chr1.2:286015-286034 MS.gene24107:CDS 45.0%
!! ACTCCTCCATGCTTTTTGCA+AGG - chr1.2:286755-286774 None:intergenic 45.0%
!! TCCAGAAGCTTTGAAGGCAT+AGG - chr1.2:285390-285409 None:intergenic 45.0%
!!! AAAATTGTTTTTATATTTTT+GGG + chr1.2:286722-286741 MS.gene24107:intron 5.0%
!!! TAAAATTGTTTTTATATTTT+TGG + chr1.2:286721-286740 MS.gene24107:intron 5.0%
GATCTTCCAAACGACGATGG+AGG + chr1.2:285915-285934 MS.gene24107:CDS 50.0%
TTCCAAACGACGATGGAGGA+TGG + chr1.2:285919-285938 MS.gene24107:CDS 50.0%
! GGTCCATCCAGAAGCTTTGA+AGG - chr1.2:285396-285415 None:intergenic 50.0%
! GTGTTGATCAGCAATCTGGC+TGG + chr1.2:286812-286831 MS.gene24107:CDS 50.0%
!! AGTGACGCAGAAGGCACTAT+GGG + chr1.2:285443-285462 MS.gene24107:CDS 50.0%
!! TAGTGACGCAGAAGGCACTA+TGG + chr1.2:285442-285461 MS.gene24107:CDS 50.0%
ATCAGCAATCTGGCTGGTGC+TGG + chr1.2:286818-286837 MS.gene24107:CDS 55.0%
CACCATCCTCCATCGTCGTT+TGG - chr1.2:285924-285943 None:intergenic 55.0%
GCAGGAGGAGCTTGTGGTTA+TGG + chr1.2:285711-285730 MS.gene24107:intron 55.0%
TATGGGGGTAGTGACGCAGA+AGG + chr1.2:285434-285453 MS.gene24107:CDS 55.0%
TGTGATGCAGGAGGAGCTTG+TGG + chr1.2:285705-285724 MS.gene24107:intron 55.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 285326 287054 285326 ID=MS.gene24107
chr1.2 mRNA 285326 287054 285326 ID=MS.gene24107.t1;Parent=MS.gene24107
chr1.2 exon 285326 285464 285326 ID=MS.gene24107.t1.exon1;Parent=MS.gene24107.t1
chr1.2 CDS 285326 285464 285326 ID=cds.MS.gene24107.t1;Parent=MS.gene24107.t1
chr1.2 exon 285715 286036 285715 ID=MS.gene24107.t1.exon2;Parent=MS.gene24107.t1
chr1.2 CDS 285715 286036 285715 ID=cds.MS.gene24107.t1;Parent=MS.gene24107.t1
chr1.2 exon 286748 287054 286748 ID=MS.gene24107.t1.exon3;Parent=MS.gene24107.t1
chr1.2 CDS 286748 287054 286748 ID=cds.MS.gene24107.t1;Parent=MS.gene24107.t1
Gene Sequence

>MS.gene24107

ATGACCAAAGTTATGTTTATTTTGGGCACACTCATTGGATTATGTTGTTTCACAATAAATTCCTATGCCTTCAAAGCTTCTGGATGGACCAATGCTCATGCAACTTTTTATGGGGGTAGTGACGCAGAAGGCACTATGGGTAAGCCCTTGTCACACCACTTTTCAACATTTTATTTCTAGTTTTTTTAGATTTCTTATAAAATAAAATTTTCATGACAATAATTTGATCTGCGACATCACTTTTATTTGTAGTGATGTCTTTCACTCATGTGTAATTTTCTGTATATAGATAATCATGTTAGAGTTAGTTGAATATTGTTTTAGGTCGTTACAAGTTAGTCATGATTAGTTGAAAATCGCTAACGATCATTTGAATATGTGTGATGCAGGAGGAGCTTGTGGTTATGGAAATCTATATTCAACGGGGTATGGGACAAGAACAGCTGCATTAAGTACTGCTTTGTTTAATGATGGAGCTTCATGTGGGCAATGCTACAAAATCATTTGTGATTATAAGACAGACCCAAGATGGTGCATAAAAGGAAGATCTATTACCATAACAGCCACAAATTTCTGTCCTCCAAATTTTGATCTTCCAAACGACGATGGAGGATGGTGCAACCCACCTCTAAAGCATTTTGATATGGCACAACCTGCTTGGGAAAAGATTGGAATCTACAGAGGAGGGATCGTCCCTGTCTTATTCCAAAGGTTAGAATTTTGATCTGTGCTACATCTTATCTTAGGTTTAATATTTAATAATGTAATAGAATCAATCCTCTCATAAAAAAGTGCAATAATATTAATGTCATTAATAAGATCAATGACATGTTATTGGTAGTTTTGAGGGAAAAAAAAAATGATATTTTGACATCAAATTTGAAACAATTTAGATGGTTAAAGCATTTTAAATATGTGGTTAACGTAGACCATTTGATGATTAATGAATATAACAAAGTGTCATACTTCATTAACCACCCACTCATAACAATTAACCACAATTTTAAACACCCTTAACGACGATTTTCAAGTATATATTTATACACAAATTATGTTTTGGTTAATGAGTATCATAATATATTTGAATGTTGTTTGATCGAGTAATATATGTATGTGTATATTTAATCACTTTAAAATCGTGGTTAATTTCATTCAGCTGATAGTTAATGTGTTGCGACACATTCTTATATTCATAAACCATCCATTAAACATAATTAACCCAATTTTTAAACTGTGTTAATCATTTAATTTGTTGCTGAAATTTTATGCAATTCTTTTTTTCAAAAAATAACATAAGTCAATTGAGAACCCATGCAATTTGTGAAAATAATCTATGTTTATTATGATTTAAATTTTGTTGTGTTCAGTAATTTAGTAGTTAGGTTCAACTTGCAATAAAATTGTTTTTATATTTTTGGGCAGGGTTCCTTGCAAAAAGCATGGAGGAGTTAGGTTCAGTGTGAATGGAAGGGACTACTTTGAGTTAGTGTTGATCAGCAATCTGGCTGGTGCTGGTTCAATCCAATCTGTTTCCATTAAAGGTTCCAAAACTGATTGGATGGCTATGTCAAGAAATTGGGGTGCAAATTGGCAATCTAATGCTTATTTGAATGGTCAATCTATGTCCTTCAAGGTCACAACTACTGATGGAGTAACCAGAACTTTCCAAAACATTGTTCCTTCCAATTGGGAATTTGGCCAATCTTTCTCTAGCAAGATCCAGTTCTAA
Protein sequence

>MS.gene24107.t1

MTKVMFILGTLIGLCCFTINSYAFKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPNDDGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISNLAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQNIVPSNWEFGQSFSSKIQF