Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007870.t1 | XP_012575306.1 | 88.6 | 229 | 24 | 1 | 1 | 229 | 1 | 227 | 5.10E-120 | 440.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007870.t1 | Q9LDJ3 | 67.8 | 214 | 69 | 0 | 16 | 229 | 11 | 224 | 8.0e-90 | 331.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007870.t1 | A0A1S3EK36 | 88.6 | 229 | 24 | 1 | 1 | 229 | 1 | 227 | 3.7e-120 | 440.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007870 | MS.gene24107 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007870.t1 | MTR_7g111010 | 52.232 | 224 | 99 | 3 | 11 | 227 | 4 | 226 | 2.04e-85 | 256 |
| MS.gene007870.t1 | MTR_1g085460 | 52.558 | 215 | 96 | 2 | 20 | 229 | 18 | 231 | 3.22e-84 | 253 |
| MS.gene007870.t1 | MTR_7g110990 | 52.093 | 215 | 91 | 3 | 18 | 227 | 4 | 211 | 2.49e-82 | 247 |
| MS.gene007870.t1 | MTR_1g026020 | 51.584 | 221 | 97 | 4 | 17 | 229 | 11 | 229 | 2.52e-82 | 248 |
| MS.gene007870.t1 | MTR_3g435430 | 53.991 | 213 | 88 | 5 | 22 | 229 | 15 | 222 | 1.25e-79 | 241 |
| MS.gene007870.t1 | MTR_5g041700 | 56.863 | 204 | 78 | 5 | 31 | 229 | 24 | 222 | 1.16e-78 | 238 |
| MS.gene007870.t1 | MTR_4g081950 | 51.073 | 233 | 103 | 6 | 3 | 229 | 31 | 258 | 1.24e-78 | 239 |
| MS.gene007870.t1 | MTR_7g011060 | 55.814 | 215 | 83 | 6 | 16 | 226 | 6 | 212 | 8.50e-78 | 236 |
| MS.gene007870.t1 | MTR_3g094040 | 49.356 | 233 | 106 | 6 | 4 | 229 | 1 | 228 | 6.65e-76 | 231 |
| MS.gene007870.t1 | MTR_3g094060 | 50.215 | 233 | 104 | 7 | 4 | 229 | 1 | 228 | 1.31e-75 | 231 |
| MS.gene007870.t1 | MTR_5g075320 | 51.121 | 223 | 96 | 7 | 15 | 229 | 9 | 226 | 1.75e-75 | 230 |
| MS.gene007870.t1 | MTR_3g466790 | 49.782 | 229 | 100 | 6 | 11 | 229 | 6 | 229 | 3.24e-73 | 224 |
| MS.gene007870.t1 | MTR_7g061720 | 50.463 | 216 | 97 | 5 | 32 | 241 | 32 | 243 | 7.45e-73 | 224 |
| MS.gene007870.t1 | MTR_5g079950 | 47.619 | 231 | 111 | 5 | 5 | 229 | 6 | 232 | 2.77e-72 | 222 |
| MS.gene007870.t1 | MTR_3g466760 | 49.333 | 225 | 99 | 6 | 15 | 229 | 16 | 235 | 2.41e-71 | 220 |
| MS.gene007870.t1 | MTR_2g097030 | 48.649 | 222 | 102 | 6 | 16 | 229 | 16 | 233 | 1.46e-70 | 218 |
| MS.gene007870.t1 | MTR_4g063975 | 53.061 | 196 | 82 | 5 | 32 | 221 | 32 | 223 | 1.14e-69 | 216 |
| MS.gene007870.t1 | MTR_6g012520 | 58.673 | 196 | 73 | 5 | 31 | 226 | 27 | 214 | 6.62e-68 | 211 |
| MS.gene007870.t1 | MTR_7g013150 | 45.740 | 223 | 110 | 6 | 11 | 229 | 12 | 227 | 1.71e-65 | 205 |
| MS.gene007870.t1 | MTR_7g013140 | 44.783 | 230 | 115 | 7 | 15 | 240 | 12 | 233 | 1.84e-65 | 205 |
| MS.gene007870.t1 | MTR_4g102450 | 44.444 | 243 | 120 | 6 | 11 | 243 | 11 | 248 | 2.89e-64 | 202 |
| MS.gene007870.t1 | MTR_8g058990 | 48.165 | 218 | 104 | 6 | 16 | 229 | 15 | 227 | 4.30e-64 | 201 |
| MS.gene007870.t1 | MTR_7g013120 | 45.205 | 219 | 112 | 5 | 15 | 229 | 13 | 227 | 5.28e-64 | 201 |
| MS.gene007870.t1 | MTR_4g124340 | 46.635 | 208 | 98 | 6 | 29 | 229 | 58 | 259 | 1.98e-63 | 201 |
| MS.gene007870.t1 | MTR_5g011210 | 41.633 | 245 | 131 | 6 | 4 | 242 | 10 | 248 | 3.80e-63 | 199 |
| MS.gene007870.t1 | MTR_8g464350 | 46.053 | 228 | 108 | 6 | 13 | 229 | 5 | 228 | 1.27e-61 | 195 |
| MS.gene007870.t1 | MTR_0040s0140 | 43.534 | 232 | 116 | 7 | 1 | 226 | 6 | 228 | 2.87e-59 | 189 |
| MS.gene007870.t1 | MTR_3g064510 | 46.445 | 211 | 96 | 7 | 32 | 229 | 53 | 259 | 2.47e-58 | 187 |
| MS.gene007870.t1 | MTR_5g076950 | 46.829 | 205 | 96 | 5 | 32 | 229 | 41 | 239 | 1.87e-57 | 185 |
| MS.gene007870.t1 | MTR_2g090255 | 42.922 | 219 | 115 | 5 | 15 | 227 | 11 | 225 | 7.38e-57 | 182 |
| MS.gene007870.t1 | MTR_0008s0120 | 33.790 | 219 | 88 | 4 | 11 | 229 | 12 | 173 | 1.09e-30 | 114 |
| MS.gene007870.t1 | MTR_2g090270 | 31.707 | 246 | 133 | 12 | 15 | 239 | 9 | 240 | 1.72e-25 | 101 |
| MS.gene007870.t1 | MTR_0122s0020 | 34.703 | 219 | 119 | 10 | 32 | 239 | 41 | 246 | 1.12e-23 | 97.1 |
| MS.gene007870.t1 | MTR_2g090265 | 31.967 | 244 | 133 | 12 | 15 | 239 | 9 | 238 | 1.58e-23 | 96.7 |
| MS.gene007870.t1 | MTR_4g028640 | 33.772 | 228 | 127 | 9 | 9 | 226 | 19 | 232 | 6.47e-22 | 92.4 |
| MS.gene007870.t1 | MTR_6g012500 | 54.795 | 73 | 32 | 1 | 154 | 226 | 181 | 252 | 7.20e-21 | 89.7 |
| MS.gene007870.t1 | MTR_0122s0020 | 36.207 | 174 | 91 | 8 | 32 | 195 | 41 | 204 | 1.46e-17 | 79.3 |
| MS.gene007870.t1 | MTR_0809s0010 | 31.100 | 209 | 120 | 8 | 14 | 211 | 29 | 224 | 2.25e-17 | 80.1 |
| MS.gene007870.t1 | MTR_0118s0070 | 29.570 | 186 | 111 | 7 | 37 | 211 | 53 | 229 | 1.05e-13 | 69.7 |
| MS.gene007870.t1 | MTR_5g013440 | 28.571 | 231 | 131 | 11 | 15 | 234 | 17 | 224 | 1.53e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007870.t1 | AT3G15370 | 67.757 | 214 | 69 | 0 | 16 | 229 | 11 | 224 | 1.06e-111 | 322 |
| MS.gene007870.t1 | AT3G15370 | 59.426 | 244 | 69 | 1 | 16 | 229 | 11 | 254 | 5.08e-105 | 306 |
| MS.gene007870.t1 | AT4G01630 | 49.123 | 228 | 110 | 2 | 9 | 231 | 5 | 231 | 9.95e-85 | 254 |
| MS.gene007870.t1 | AT1G69530 | 54.260 | 223 | 89 | 6 | 15 | 229 | 7 | 224 | 1.39e-79 | 241 |
| MS.gene007870.t1 | AT1G69530 | 54.260 | 223 | 89 | 6 | 15 | 229 | 7 | 224 | 1.39e-79 | 241 |
| MS.gene007870.t1 | AT1G69530 | 54.260 | 223 | 89 | 6 | 15 | 229 | 7 | 224 | 2.00e-79 | 241 |
| MS.gene007870.t1 | AT5G56320 | 52.055 | 219 | 95 | 5 | 16 | 229 | 13 | 226 | 7.16e-79 | 239 |
| MS.gene007870.t1 | AT5G56320 | 52.055 | 219 | 95 | 5 | 16 | 229 | 13 | 226 | 7.16e-79 | 239 |
| MS.gene007870.t1 | AT5G56320 | 52.055 | 219 | 95 | 5 | 16 | 229 | 13 | 226 | 4.57e-78 | 239 |
| MS.gene007870.t1 | AT2G40610 | 50.685 | 219 | 99 | 4 | 16 | 229 | 14 | 228 | 7.45e-78 | 236 |
| MS.gene007870.t1 | AT2G03090 | 52.137 | 234 | 95 | 7 | 1 | 229 | 6 | 227 | 1.52e-76 | 233 |
| MS.gene007870.t1 | AT1G20190 | 53.052 | 213 | 90 | 4 | 25 | 229 | 16 | 226 | 2.73e-76 | 232 |
| MS.gene007870.t1 | AT3G29030 | 48.760 | 242 | 97 | 6 | 1 | 229 | 1 | 228 | 2.91e-76 | 233 |
| MS.gene007870.t1 | AT3G55500 | 48.511 | 235 | 111 | 5 | 1 | 229 | 3 | 233 | 2.22e-75 | 230 |
| MS.gene007870.t1 | AT2G39700 | 51.570 | 223 | 96 | 6 | 15 | 229 | 12 | 230 | 7.28e-75 | 229 |
| MS.gene007870.t1 | AT1G69530 | 54.854 | 206 | 80 | 6 | 15 | 212 | 7 | 207 | 3.00e-73 | 224 |
| MS.gene007870.t1 | AT5G05290 | 49.321 | 221 | 102 | 5 | 15 | 229 | 14 | 230 | 3.18e-73 | 224 |
| MS.gene007870.t1 | AT1G69530 | 54.854 | 206 | 80 | 6 | 15 | 212 | 7 | 207 | 3.32e-73 | 223 |
| MS.gene007870.t1 | AT5G02260 | 50.000 | 218 | 98 | 6 | 32 | 243 | 32 | 244 | 3.58e-72 | 222 |
| MS.gene007870.t1 | AT2G37640 | 52.451 | 204 | 87 | 5 | 32 | 229 | 36 | 235 | 7.95e-72 | 221 |
| MS.gene007870.t1 | AT1G26770 | 50.909 | 220 | 98 | 5 | 15 | 229 | 9 | 223 | 6.24e-70 | 216 |
| MS.gene007870.t1 | AT1G26770 | 50.909 | 220 | 98 | 5 | 15 | 229 | 19 | 233 | 7.41e-70 | 216 |
| MS.gene007870.t1 | AT2G28950 | 49.309 | 217 | 98 | 6 | 17 | 225 | 14 | 226 | 1.68e-69 | 215 |
| MS.gene007870.t1 | AT5G39280 | 49.751 | 201 | 93 | 5 | 32 | 229 | 54 | 249 | 3.94e-67 | 210 |
| MS.gene007870.t1 | AT5G39300 | 48.756 | 201 | 95 | 5 | 32 | 229 | 55 | 250 | 4.02e-67 | 210 |
| MS.gene007870.t1 | AT1G12560 | 44.068 | 236 | 117 | 6 | 1 | 226 | 1 | 231 | 4.63e-65 | 204 |
| MS.gene007870.t1 | AT2G37640 | 52.083 | 192 | 82 | 5 | 49 | 234 | 28 | 215 | 1.53e-64 | 202 |
| MS.gene007870.t1 | AT5G39290 | 48.259 | 201 | 96 | 5 | 32 | 229 | 58 | 253 | 1.68e-62 | 198 |
| MS.gene007870.t1 | AT5G39270 | 48.259 | 201 | 96 | 5 | 32 | 229 | 58 | 253 | 1.87e-62 | 198 |
| MS.gene007870.t1 | AT1G62980 | 45.045 | 222 | 109 | 5 | 14 | 226 | 9 | 226 | 3.45e-62 | 196 |
| MS.gene007870.t1 | AT1G20190 | 54.762 | 168 | 69 | 3 | 67 | 229 | 2 | 167 | 2.04e-61 | 192 |
| MS.gene007870.t1 | AT3G03220 | 47.826 | 207 | 95 | 5 | 32 | 231 | 40 | 240 | 2.35e-60 | 192 |
| MS.gene007870.t1 | AT5G39310 | 44.175 | 206 | 107 | 5 | 27 | 229 | 85 | 285 | 5.99e-58 | 187 |
| MS.gene007870.t1 | AT4G38210 | 45.000 | 220 | 109 | 6 | 16 | 227 | 12 | 227 | 2.02e-55 | 179 |
| MS.gene007870.t1 | AT5G39260 | 44.724 | 199 | 102 | 6 | 32 | 229 | 45 | 236 | 1.64e-52 | 172 |
| MS.gene007870.t1 | AT4G28250 | 35.391 | 243 | 127 | 10 | 3 | 229 | 5 | 233 | 3.27e-31 | 117 |
| MS.gene007870.t1 | AT2G20750 | 38.974 | 195 | 102 | 8 | 26 | 210 | 34 | 221 | 5.69e-29 | 111 |
| MS.gene007870.t1 | AT4G28250 | 33.891 | 239 | 124 | 10 | 3 | 226 | 5 | 224 | 2.90e-26 | 103 |
| MS.gene007870.t1 | AT2G20750 | 38.983 | 177 | 91 | 8 | 26 | 192 | 34 | 203 | 1.90e-23 | 95.5 |
| MS.gene007870.t1 | AT4G28250 | 34.135 | 208 | 103 | 10 | 3 | 195 | 5 | 193 | 3.06e-21 | 89.4 |
| MS.gene007870.t1 | AT4G28250 | 34.634 | 205 | 100 | 10 | 3 | 192 | 5 | 190 | 7.75e-21 | 88.2 |
| MS.gene007870.t1 | AT1G65680 | 33.036 | 224 | 126 | 10 | 32 | 242 | 47 | 259 | 1.92e-19 | 85.9 |
| MS.gene007870.t1 | AT1G65681 | 31.250 | 176 | 102 | 8 | 48 | 214 | 14 | 179 | 5.36e-14 | 69.7 |
| MS.gene007870.t1 | AT2G45110 | 30.568 | 229 | 127 | 11 | 17 | 222 | 10 | 229 | 2.18e-13 | 68.6 |
| MS.gene007870.t1 | AT3G60570 | 30.120 | 166 | 96 | 5 | 1 | 157 | 1 | 155 | 2.72e-13 | 68.6 |
| MS.gene007870.t1 | AT4G17030 | 28.846 | 208 | 120 | 8 | 11 | 208 | 11 | 200 | 8.98e-12 | 63.9 |
Find 72 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTACCATTGCACAGAAAT+TGG | 0.160155 | 8.3:+48003177 | MS.gene007870:CDS |
| AACGCTCATGCAACGTTCTA+TGG | 0.182142 | 8.3:+47999618 | MS.gene007870:CDS |
| CGACTTCTAAGACACCATTT+TGG | 0.231012 | 8.3:-48001507 | None:intergenic |
| TTTCACATGAAGAGCCTCTT+TGG | 0.281375 | 8.3:-48003806 | None:intergenic |
| TAATCTTGAACGAGAGTCTT+TGG | 0.293184 | 8.3:-48003235 | None:intergenic |
| TGGTGGCAGCGGTGATATAA+AGG | 0.294731 | 8.3:+48003121 | MS.gene007870:CDS |
| AAGTCCTTTCCTCAACAAAT+AGG | 0.295985 | 8.3:-48003851 | None:intergenic |
| ACTATAAAATCGACCCAAAA+TGG | 0.309177 | 8.3:+48001493 | MS.gene007870:CDS |
| TTCAAGATTACTTTGGTTGA+TGG | 0.313364 | 8.3:+48003248 | MS.gene007870:CDS |
| ACAGAAATTGGGGAGCTAAT+TGG | 0.336521 | 8.3:+48003189 | MS.gene007870:CDS |
| CACCATCCTCCATGATTGTT+TGG | 0.340496 | 8.3:-48001564 | None:intergenic |
| GTTACCATTGCACAGAAATT+GGG | 0.345806 | 8.3:+48003178 | MS.gene007870:CDS |
| AAGGCTGGTTGGACTTTGAT+TGG | 0.372747 | 8.3:-47999643 | None:intergenic |
| TGGTAACCAAGCTCCACTTC+TGG | 0.376497 | 8.3:-48003162 | None:intergenic |
| GGCAAAGCAGTGCAGATCTA+AGG | 0.383218 | 8.3:+48003210 | MS.gene007870:CDS |
| GATACCTTTCATGCTGGGTT+TGG | 0.393917 | 8.3:+48001393 | MS.gene007870:CDS |
| TTGTTCCTGTCCTTTATAGA+AGG | 0.394122 | 8.3:+48001661 | MS.gene007870:CDS |
| GCAAAAGAAGAGGAGGAGTT+AGG | 0.422267 | 8.3:+48003048 | MS.gene007870:CDS |
| TTCAGAGAAGGTGAGGTTTG+TGG | 0.423134 | 8.3:+48001447 | MS.gene007870:CDS |
| GGTGGCAGCGGTGATATAAA+GGG | 0.440322 | 8.3:+48003122 | MS.gene007870:CDS |
| TATGATGATACCTTTCATGC+TGG | 0.440717 | 8.3:+48001387 | MS.gene007870:CDS |
| TTGAGGAAAGGACTTGAGAA+AGG | 0.451995 | 8.3:+48003859 | MS.gene007870:CDS |
| AGGAGTTAGGTTCACATTGA+AGG | 0.456036 | 8.3:+48003061 | MS.gene007870:CDS |
| ACGCTCATGCAACGTTCTAT+GGG | 0.460595 | 8.3:+47999619 | MS.gene007870:CDS |
| ATGATGATACCTTTCATGCT+GGG | 0.461474 | 8.3:+48001388 | MS.gene007870:CDS |
| AAGAGGCTCTTCATGTGAAA+GGG | 0.466701 | 8.3:+48003809 | MS.gene007870:CDS |
| CACATGAAGAGCCTCTTTGG+AGG | 0.479422 | 8.3:-48003803 | None:intergenic |
| CGGGGTCATCTGTCAGAGAA+AGG | 0.481092 | 8.3:+48003773 | MS.gene007870:CDS |
| ACTCTCGTTCAAGATTACTT+TGG | 0.482452 | 8.3:+48003241 | MS.gene007870:CDS |
| TTCTACCTTCTATAAAGGAC+AGG | 0.483939 | 8.3:-48001666 | None:intergenic |
| GTCATAACTCATACCAAGGC+TGG | 0.504359 | 8.3:-47999658 | None:intergenic |
| AAAGAGGCTCTTCATGTGAA+AGG | 0.513421 | 8.3:+48003808 | MS.gene007870:CDS |
| ACATGAAGAGCCTCTTTGGA+GGG | 0.518241 | 8.3:-48003802 | None:intergenic |
| AAAACCTATTTGTTGAGGAA+AGG | 0.520101 | 8.3:+48003847 | MS.gene007870:CDS |
| ATAACAAACGTTGGTGGCAG+CGG | 0.525888 | 8.3:+48003110 | MS.gene007870:CDS |
| GGAGTTAGGTTCACATTGAA+GGG | 0.526521 | 8.3:+48003062 | MS.gene007870:CDS |
| AATCAAAGTCCAACCAGCCT+TGG | 0.527653 | 8.3:+47999645 | MS.gene007870:CDS |
| CACACCAAACCCAGCATGAA+AGG | 0.535814 | 8.3:-48001397 | None:intergenic |
| TTCTTTCGCATTGCACGACA+AGG | 0.541785 | 8.3:+48001627 | MS.gene007870:CDS |
| CGTGCAATGCGAAAGAAAGC+AGG | 0.542098 | 8.3:-48001621 | None:intergenic |
| AATATTTCAGGAGGAGCTTG+TGG | 0.542340 | 8.3:+48001363 | MS.gene007870:intron |
| CATGAAGAGCCTCTTTGGAG+GGG | 0.549712 | 8.3:-48003801 | None:intergenic |
| GAGGTTCCAGAAGTGGAGCT+TGG | 0.549845 | 8.3:+48003156 | MS.gene007870:CDS |
| GCTCCCCAATTTCTGTGCAA+TGG | 0.550029 | 8.3:-48003182 | None:intergenic |
| CATCCTCCATGATTGTTTGG+AGG | 0.550332 | 8.3:-48001561 | None:intergenic |
| TGGATAAGAGGTTCCAGAAG+TGG | 0.560366 | 8.3:+48003149 | MS.gene007870:CDS |
| GGGGTCATCTGTCAGAGAAA+GGG | 0.564279 | 8.3:+48003774 | MS.gene007870:CDS |
| ATTGCACGACAAGGAAATGA+AGG | 0.572173 | 8.3:+48001636 | MS.gene007870:CDS |
| AGAATCCACGTTGAAGCTAA+CGG | 0.575394 | 8.3:+47999588 | MS.gene007870:CDS |
| TAACTCATACCAAGGCTGGT+TGG | 0.575835 | 8.3:-47999654 | None:intergenic |
| AGATGAAAACCTATTTGTTG+AGG | 0.576336 | 8.3:+48003842 | MS.gene007870:CDS |
| TTACCATTGCACAGAAATTG+GGG | 0.582471 | 8.3:+48003179 | MS.gene007870:CDS |
| TCCACGTTGAAGCTAACGGT+TGG | 0.587064 | 8.3:+47999592 | MS.gene007870:CDS |
| CTCCAAACAATCATGGAGGA+TGG | 0.600779 | 8.3:+48001562 | MS.gene007870:CDS |
| GCATGGACATATCAAAGTGA+TGG | 0.615233 | 8.3:-48001599 | None:intergenic |
| TTAAATGAAGAAATCACAAG+AGG | 0.618476 | 8.3:-47999525 | None:intergenic |
| AGGGTAGCATGCAAAAGAAG+AGG | 0.620539 | 8.3:+48003038 | MS.gene007870:intron |
| GTAGCATGCAAAAGAAGAGG+AGG | 0.621264 | 8.3:+48003041 | MS.gene007870:CDS |
| GACATATCAAAGTGATGGTG+TGG | 0.621785 | 8.3:-48001594 | None:intergenic |
| ATATCAAAGTGATGGTGTGG+AGG | 0.623230 | 8.3:-48001591 | None:intergenic |
| AGAGGCTCTTCATGTGAAAG+GGG | 0.630446 | 8.3:+48003810 | MS.gene007870:CDS |
| CGCTCATGCAACGTTCTATG+GGG | 0.631588 | 8.3:+47999620 | MS.gene007870:CDS |
| AATGCGAAAGAAAGCAGGCA+TGG | 0.655376 | 8.3:-48001616 | None:intergenic |
| GTGGCAGCGGTGATATAAAG+GGG | 0.655664 | 8.3:+48003123 | MS.gene007870:CDS |
| AAGGGAGAGCCCCTCCAAAG+AGG | 0.655925 | 8.3:+48003792 | MS.gene007870:CDS |
| AAAGTTTGTGGACAGTCTCG+GGG | 0.662102 | 8.3:+48003755 | MS.gene007870:intron |
| GGGTCAATCAAATTTCAACA+TGG | 0.676126 | 8.3:+48003082 | MS.gene007870:CDS |
| GTGATGATAACAAACGTTGG+TGG | 0.676699 | 8.3:+48003104 | MS.gene007870:CDS |
| TGTCCTCCAAACAATCATGG+AGG | 0.680110 | 8.3:+48001558 | MS.gene007870:CDS |
| GCCAACCGTTAGCTTCAACG+TGG | 0.691827 | 8.3:-47999593 | None:intergenic |
| TGGCAGCGGTGATATAAAGG+GGG | 0.752235 | 8.3:+48003124 | MS.gene007870:CDS |
| ATGGTGATGATAACAAACGT+TGG | 0.779869 | 8.3:+48003101 | MS.gene007870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATTAATTAATTTTTTAA+AGG | - | chr8.3:48003647-48003666 | None:intergenic | 0.0% |
| !! | AATATTAATAAAATTCAACA+TGG | + | chr8.3:48001057-48001076 | MS.gene007870:intron | 10.0% |
| !! | TAAAGAAAAAAAAGATTTAT+AGG | + | chr8.3:48002182-48002201 | MS.gene007870:intron | 10.0% |
| !! | TATATAGTATAAATAACTAA+CGG | + | chr8.3:48002825-48002844 | MS.gene007870:intron | 10.0% |
| !!! | AAGTTTGTTTAATTAATTTT+TGG | + | chr8.3:48000232-48000251 | MS.gene007870:intron | 10.0% |
| !!! | ATTATAGAAAAATTTGTTTA+AGG | + | chr8.3:48002561-48002580 | MS.gene007870:intron | 10.0% |
| !!! | TATTTTTTTTGTTATATTGT+TGG | - | chr8.3:48002501-48002520 | None:intergenic | 10.0% |
| !!! | TTATAGAAAAATTTGTTTAA+GGG | + | chr8.3:48002562-48002581 | MS.gene007870:intron | 10.0% |
| !!! | TTCAATTTTATCTATAATTA+TGG | + | chr8.3:47999750-47999769 | MS.gene007870:intron | 10.0% |
| !!! | TTTCTTCATTTAATTTTATT+TGG | + | chr8.3:47999535-47999554 | MS.gene007870:CDS | 10.0% |
| !! | AAAACATATCTTTCTTTAAT+AGG | + | chr8.3:48001690-48001709 | MS.gene007870:intron | 15.0% |
| !! | AAACTAATAGAATTGATTAT+GGG | - | chr8.3:48003336-48003355 | None:intergenic | 15.0% |
| !! | AATAATACTTCTCAATAAAA+AGG | - | chr8.3:48000741-48000760 | None:intergenic | 15.0% |
| !! | AATTAATTATATACAACTGA+AGG | + | chr8.3:48003657-48003676 | MS.gene007870:intron | 15.0% |
| !! | AATTATTTGTTTGTGATATT+GGG | - | chr8.3:48002010-48002029 | None:intergenic | 15.0% |
| !! | AGAAAAAGTTGTAAAAAAAA+TGG | - | chr8.3:48000771-48000790 | None:intergenic | 15.0% |
| !! | AGTTAAGATTAGAATATATA+AGG | - | chr8.3:48001257-48001276 | None:intergenic | 15.0% |
| !! | ATAAATTTACAAAGAAAAAG+AGG | - | chr8.3:48000851-48000870 | None:intergenic | 15.0% |
| !! | ATAATACTTCTCAATAAAAA+GGG | - | chr8.3:48000740-48000759 | None:intergenic | 15.0% |
| !! | ATTAATTATATACAACTGAA+GGG | + | chr8.3:48003658-48003677 | MS.gene007870:intron | 15.0% |
| !! | ATTATATCCCTAAAATAAAA+AGG | - | chr8.3:47999883-47999902 | None:intergenic | 15.0% |
| !! | GTTATTTGTATTGAAAATTA+AGG | + | chr8.3:48002744-48002763 | MS.gene007870:intron | 15.0% |
| !! | TAATTATTTGTTTGTGATAT+TGG | - | chr8.3:48002011-48002030 | None:intergenic | 15.0% |
| !! | TATAAATAAAAAATCTGATG+AGG | + | chr8.3:48001925-48001944 | MS.gene007870:intron | 15.0% |
| !! | TGTTATATTAAATTATCAGA+AGG | - | chr8.3:48001320-48001339 | None:intergenic | 15.0% |
| !!! | AAAAATAGTGATTTCTTTTT+CGG | - | chr8.3:48001905-48001924 | None:intergenic | 15.0% |
| !!! | AACATTTTTTAGTTAAATAG+TGG | - | chr8.3:48002273-48002292 | None:intergenic | 15.0% |
| !!! | AAGCAAAAAAATTTTTTTAG+CGG | + | chr8.3:48000553-48000572 | MS.gene007870:intron | 15.0% |
| !!! | AATTGTACCTTTTTATTTTA+GGG | + | chr8.3:47999873-47999892 | MS.gene007870:intron | 15.0% |
| !!! | CAGTATTTTTTATGAAATTT+TGG | + | chr8.3:48002390-48002409 | MS.gene007870:intron | 15.0% |
| !!! | GTTAATATTTGGAATATTAT+CGG | + | chr8.3:48000158-48000177 | MS.gene007870:intron | 15.0% |
| !!! | TAACATTTTCAAAAACAATA+TGG | - | chr8.3:48002904-48002923 | None:intergenic | 15.0% |
| !!! | TAATTGTACCTTTTTATTTT+AGG | + | chr8.3:47999872-47999891 | MS.gene007870:intron | 15.0% |
| !!! | TACACTTTTAATATGATAAA+AGG | + | chr8.3:48002635-48002654 | MS.gene007870:intron | 15.0% |
| !!! | TAGTTTTAAATTTATCAAGA+AGG | + | chr8.3:47999812-47999831 | MS.gene007870:intron | 15.0% |
| !!! | TCTTTTTCTTTGTAAATTTA+TGG | + | chr8.3:48000850-48000869 | MS.gene007870:intron | 15.0% |
| !!! | TGGTCTATATAAAATATTTT+TGG | - | chr8.3:48001168-48001187 | None:intergenic | 15.0% |
| !! | AAATAAATGATGATTTGAAG+TGG | + | chr8.3:48003570-48003589 | MS.gene007870:intron | 20.0% |
| !! | AGAAAAAAAAGATTTATAGG+TGG | + | chr8.3:48002185-48002204 | MS.gene007870:intron | 20.0% |
| !! | ATATATACATGTAATTGAAC+AGG | + | chr8.3:48003018-48003037 | MS.gene007870:intron | 20.0% |
| !! | ATATTCCAAATATTAACATG+CGG | - | chr8.3:48000155-48000174 | None:intergenic | 20.0% |
| !! | ATTTATGTAAAGATTTAGAG+AGG | - | chr8.3:48001191-48001210 | None:intergenic | 20.0% |
| !! | CTCATTATGTATCATATAAA+GGG | - | chr8.3:48002079-48002098 | None:intergenic | 20.0% |
| !! | CTTTATATGATACATAATGA+GGG | + | chr8.3:48002078-48002097 | MS.gene007870:intron | 20.0% |
| !! | GAAACTAATAGAATTGATTA+TGG | - | chr8.3:48003337-48003356 | None:intergenic | 20.0% |
| !! | GGTTCTTAATATTAAACAAA+TGG | - | chr8.3:48001299-48001318 | None:intergenic | 20.0% |
| !! | TAATACTTCTCAATAAAAAG+GGG | - | chr8.3:48000739-48000758 | None:intergenic | 20.0% |
| !! | TATATACATGTAATTGAACA+GGG | + | chr8.3:48003019-48003038 | MS.gene007870:intron | 20.0% |
| !! | TTAAATTAATCCACTCAAAT+TGG | + | chr8.3:48002921-48002940 | MS.gene007870:intron | 20.0% |
| !! | TTAATTATATACAACTGAAG+GGG | + | chr8.3:48003659-48003678 | MS.gene007870:intron | 20.0% |
| !! | TTCTATAATAAAGATTGTGT+TGG | - | chr8.3:48002550-48002569 | None:intergenic | 20.0% |
| !!! | ATAATTTTTACACGCATATA+AGG | - | chr8.3:47999910-47999929 | None:intergenic | 20.0% |
| !!! | TATTTGGTGTCTTTTATTAT+TGG | + | chr8.3:47999551-47999570 | MS.gene007870:CDS | 20.0% |
| !!! | TTGAAAATTAAGGACAATTT+TGG | + | chr8.3:48002754-48002773 | MS.gene007870:intron | 20.0% |
| !!! | TTTAGATATTTTTATAGAGC+TGG | + | chr8.3:48001802-48001821 | MS.gene007870:intron | 20.0% |
| !!! | TTTTATTCTACCTTCTATAA+AGG | - | chr8.3:48001674-48001693 | None:intergenic | 20.0% |
| ! | AGGATGCAACATTATAATAT+GGG | - | chr8.3:48002975-48002994 | None:intergenic | 25.0% |
| ! | ATCCTCTATTGTAAATCAAT+TGG | + | chr8.3:48002990-48003009 | MS.gene007870:intron | 25.0% |
| ! | CATGGAAAAATAAATATGAC+AGG | + | chr8.3:48000207-48000226 | MS.gene007870:intron | 25.0% |
| ! | CCTCATTATGTATCATATAA+AGG | - | chr8.3:48002080-48002099 | None:intergenic | 25.0% |
| ! | CCTTTATATGATACATAATG+AGG | + | chr8.3:48002077-48002096 | MS.gene007870:intron | 25.0% |
| ! | CTGAAATTACTTGATTGTAT+AGG | + | chr8.3:48001840-48001859 | MS.gene007870:intron | 25.0% |
| ! | GAAGAAAAAAGAAAAGAAAG+AGG | - | chr8.3:48000427-48000446 | None:intergenic | 25.0% |
| ! | GTAAATCTCATATTAACACA+GGG | - | chr8.3:48000028-48000047 | None:intergenic | 25.0% |
| ! | TAAATCTCATATTAACACAG+GGG | - | chr8.3:48000027-48000046 | None:intergenic | 25.0% |
| ! | TATTCCAAATATTAACATGC+GGG | - | chr8.3:48000154-48000173 | None:intergenic | 25.0% |
| ! | TGTAAATCTCATATTAACAC+AGG | - | chr8.3:48000029-48000048 | None:intergenic | 25.0% |
| ! | TGTGATTATGACAATATTTC+AGG | + | chr8.3:48001351-48001370 | MS.gene007870:intron | 25.0% |
| ! | TTAAATGAAGAAATCACAAG+AGG | - | chr8.3:47999528-47999547 | None:intergenic | 25.0% |
| !! | CTATTTCTTAAACGTAACTT+GGG | - | chr8.3:48000263-48000282 | None:intergenic | 25.0% |
| !! | GAAACCTATAAACATTTTTG+AGG | - | chr8.3:48002160-48002179 | None:intergenic | 25.0% |
| !! | TCATACTTGTAAGTTTTACA+TGG | + | chr8.3:48001140-48001159 | MS.gene007870:intron | 25.0% |
| !! | TCTATTTCTTAAACGTAACT+TGG | - | chr8.3:48000264-48000283 | None:intergenic | 25.0% |
| !! | TTTTATAGTCACATATGACT+TGG | - | chr8.3:48001482-48001501 | None:intergenic | 25.0% |
| !!! | GGTTACTTTGTTTTTATTGA+AGG | + | chr8.3:48001946-48001965 | MS.gene007870:intron | 25.0% |
| !!! | TAATTTTTTCAGATCTCTGT+AGG | + | chr8.3:48002108-48002127 | MS.gene007870:intron | 25.0% |
| AATCTGTACAGACTTAGATT+CGG | + | chr8.3:48002331-48002350 | MS.gene007870:intron | 30.0% | |
| ACAAACATTTAATACTCCCT+TGG | - | chr8.3:48003529-48003548 | None:intergenic | 30.0% | |
| ACTATAAAATCGACCCAAAA+TGG | + | chr8.3:48001493-48001512 | MS.gene007870:CDS | 30.0% | |
| ATATCCCGCATGTTAATATT+TGG | + | chr8.3:48000147-48000166 | MS.gene007870:intron | 30.0% | |
| ATATGTCATAACTCATACCA+AGG | - | chr8.3:47999665-47999684 | None:intergenic | 30.0% | |
| GAGGATGCAACATTATAATA+TGG | - | chr8.3:48002976-48002995 | None:intergenic | 30.0% | |
| GATTATGACAATATTTCAGG+AGG | + | chr8.3:48001354-48001373 | MS.gene007870:intron | 30.0% | |
| GGTAATTTCCCAGAAATAAT+GGG | - | chr8.3:47999998-48000017 | None:intergenic | 30.0% | |
| GGTATGCATCCAATTATATA+TGG | + | chr8.3:48003591-48003610 | MS.gene007870:intron | 30.0% | |
| GTCATTGAAATAGATCATCA+TGG | - | chr8.3:48002477-48002496 | None:intergenic | 30.0% | |
| TATGTAAAGATTTAGAGAGG+TGG | - | chr8.3:48001188-48001207 | None:intergenic | 30.0% | |
| TATGTTACTATGCATATGCA+AGG | + | chr8.3:48000345-48000364 | MS.gene007870:intron | 30.0% | |
| TGATGCATGCCATATATAAT+TGG | - | chr8.3:48003603-48003622 | None:intergenic | 30.0% | |
| TGGACCTCAAAAATGTTTAT+AGG | + | chr8.3:48002153-48002172 | MS.gene007870:intron | 30.0% | |
| TGGTAATTTCCCAGAAATAA+TGG | - | chr8.3:47999999-48000018 | None:intergenic | 30.0% | |
| TTCAAGATTACTTTGGTTGA+TGG | + | chr8.3:48003248-48003267 | MS.gene007870:CDS | 30.0% | |
| TTGTTCTTTAGTGAAAACAG+TGG | + | chr8.3:47999936-47999955 | MS.gene007870:intron | 30.0% | |
| ! | AAAACCTATTTGTTGAGGAA+AGG | + | chr8.3:48003847-48003866 | MS.gene007870:CDS | 30.0% |
| ! | AGATGAAAACCTATTTGTTG+AGG | + | chr8.3:48003842-48003861 | MS.gene007870:CDS | 30.0% |
| ! | GTTTAAGACAAAGAAGAAAC+TGG | + | chr8.3:48000292-48000311 | MS.gene007870:intron | 30.0% |
| ! | TATTAGTTTCTCATATGAGC+TGG | + | chr8.3:48003347-48003366 | MS.gene007870:intron | 30.0% |
| ! | TCATGCCTTTAAAAATTGCA+GGG | - | chr8.3:48003403-48003422 | None:intergenic | 30.0% |
| ! | TGCCAATTGATTTACAATAG+AGG | - | chr8.3:48002995-48003014 | None:intergenic | 30.0% |
| ! | TTATTGAAGGCACAATCAAA+GGG | + | chr8.3:48001959-48001978 | MS.gene007870:intron | 30.0% |
| ! | TTTATTGAAGGCACAATCAA+AGG | + | chr8.3:48001958-48001977 | MS.gene007870:intron | 30.0% |
| !! | CTTTCTTTAATAGGCATTGA+TGG | + | chr8.3:48001699-48001718 | MS.gene007870:intron | 30.0% |
| !! | TTTGGTTGATGGTAAAACAT+TGG | + | chr8.3:48003259-48003278 | MS.gene007870:intron | 30.0% |
| !!! | ATATTAACACAGGGGTATTT+TGG | - | chr8.3:48000019-48000038 | None:intergenic | 30.0% |
| !!! | TGCGAATTTTTTTACTTGTG+TGG | - | chr8.3:48002878-48002897 | None:intergenic | 30.0% |
| AACGAATTGTGAAGGTTTGA+GGG | - | chr8.3:48000525-48000544 | None:intergenic | 35.0% | |
| AAGAAACTGGATAACAGTCA+CGG | + | chr8.3:48000305-48000324 | MS.gene007870:intron | 35.0% | |
| AAGTCCTTTCCTCAACAAAT+AGG | - | chr8.3:48003854-48003873 | None:intergenic | 35.0% | |
| ACTCTCGTTCAAGATTACTT+TGG | + | chr8.3:48003241-48003260 | MS.gene007870:CDS | 35.0% | |
| ATGATGATACCTTTCATGCT+GGG | + | chr8.3:48001388-48001407 | MS.gene007870:CDS | 35.0% | |
| CATCTCTTTGAACCAAATCA+TGG | - | chr8.3:48003685-48003704 | None:intergenic | 35.0% | |
| GACATATTGTAGAACAAAGG+TGG | + | chr8.3:48000099-48000118 | MS.gene007870:intron | 35.0% | |
| GGGTCAATCAAATTTCAACA+TGG | + | chr8.3:48003082-48003101 | MS.gene007870:CDS | 35.0% | |
| GGTGACATATTGTAGAACAA+AGG | + | chr8.3:48000096-48000115 | MS.gene007870:intron | 35.0% | |
| GTTAAGAGGACTAATGTTCA+TGG | + | chr8.3:48000189-48000208 | MS.gene007870:intron | 35.0% | |
| GTTACCATTGCACAGAAATT+GGG | + | chr8.3:48003178-48003197 | MS.gene007870:CDS | 35.0% | |
| GTTTGGAGGACAAAAATTTG+TGG | - | chr8.3:48001550-48001569 | None:intergenic | 35.0% | |
| TAATCCACTCAAATTGGTAC+CGG | + | chr8.3:48002927-48002946 | MS.gene007870:intron | 35.0% | |
| TAATCTTGAACGAGAGTCTT+TGG | - | chr8.3:48003238-48003257 | None:intergenic | 35.0% | |
| TATCGGATTAACGTGTTAAG+AGG | + | chr8.3:48000175-48000194 | MS.gene007870:intron | 35.0% | |
| TATGATGATACCTTTCATGC+TGG | + | chr8.3:48001387-48001406 | MS.gene007870:CDS | 35.0% | |
| TCAATGTTGTGTCTTCCAAT+TGG | + | chr8.3:48003288-48003307 | MS.gene007870:intron | 35.0% | |
| TGTTTGTCCAAATCTCCAAT+TGG | - | chr8.3:48003306-48003325 | None:intergenic | 35.0% | |
| TTACCATTGCACAGAAATTG+GGG | + | chr8.3:48003179-48003198 | MS.gene007870:CDS | 35.0% | |
| TTCTACCTTCTATAAAGGAC+AGG | - | chr8.3:48001669-48001688 | None:intergenic | 35.0% | |
| TTCTTTAGTGAAAACAGTGG+CGG | + | chr8.3:47999939-47999958 | MS.gene007870:intron | 35.0% | |
| TTGTTCCTGTCCTTTATAGA+AGG | + | chr8.3:48001661-48001680 | MS.gene007870:CDS | 35.0% | |
| ! | AAAGCGTTTCAGAAAAAGGT+GGG | - | chr8.3:48000062-48000081 | None:intergenic | 35.0% |
| ! | ATGGTGATGATAACAAACGT+TGG | + | chr8.3:48003101-48003120 | MS.gene007870:CDS | 35.0% |
| ! | CAACACCCTGCAATTTTTAA+AGG | + | chr8.3:48003395-48003414 | MS.gene007870:intron | 35.0% |
| ! | CTCATGCCTTTAAAAATTGC+AGG | - | chr8.3:48003404-48003423 | None:intergenic | 35.0% |
| ! | CTTTAAAAATTGCAGGGTGT+TGG | - | chr8.3:48003397-48003416 | None:intergenic | 35.0% |
| ! | TATTGAAGGCACAATCAAAG+GGG | + | chr8.3:48001960-48001979 | MS.gene007870:intron | 35.0% |
| ! | TTTTGTCCTCCAAACAATCA+TGG | + | chr8.3:48001555-48001574 | MS.gene007870:CDS | 35.0% |
| !! | AATTTGTTTTCACTCAGTGG+CGG | - | chr8.3:48000604-48000623 | None:intergenic | 35.0% |
| !! | ATTTCCCAGAAATAATGGGT+AGG | - | chr8.3:47999994-48000013 | None:intergenic | 35.0% |
| !! | ATTTTTAAAGGCATGAGTGG+AGG | + | chr8.3:48003407-48003426 | MS.gene007870:intron | 35.0% |
| !! | GCAATTTTTAAAGGCATGAG+TGG | + | chr8.3:48003404-48003423 | MS.gene007870:intron | 35.0% |
| !! | GTCAATTTGTTTTCACTCAG+TGG | - | chr8.3:48000607-48000626 | None:intergenic | 35.0% |
| !!! | GACTTCTAAGACACCATTTT+GGG | - | chr8.3:48001509-48001528 | None:intergenic | 35.0% |
| !!! | GAGCCAGACAAATTTTTTTG+GGG | - | chr8.3:48000582-48000601 | None:intergenic | 35.0% |
| !!! | GGAGCCAGACAAATTTTTTT+GGG | - | chr8.3:48000583-48000602 | None:intergenic | 35.0% |
| AAAGAGGCTCTTCATGTGAA+AGG | + | chr8.3:48003808-48003827 | MS.gene007870:CDS | 40.0% | |
| AAGAGGCTCTTCATGTGAAA+GGG | + | chr8.3:48003809-48003828 | MS.gene007870:CDS | 40.0% | |
| AATATTTCAGGAGGAGCTTG+TGG | + | chr8.3:48001363-48001382 | MS.gene007870:intron | 40.0% | |
| ACAAAGTTTGTGGACAGTCT+CGG | + | chr8.3:48003753-48003772 | MS.gene007870:intron | 40.0% | |
| ACAGAAATTGGGGAGCTAAT+TGG | + | chr8.3:48003189-48003208 | MS.gene007870:CDS | 40.0% | |
| ACCTCTTGAACGAATTGTGA+AGG | - | chr8.3:48000533-48000552 | None:intergenic | 40.0% | |
| ACCTTCACAATTCGTTCAAG+AGG | + | chr8.3:48000529-48000548 | MS.gene007870:intron | 40.0% | |
| AGAAACTGGATAACAGTCAC+GGG | + | chr8.3:48000306-48000325 | MS.gene007870:intron | 40.0% | |
| AGAATCCACGTTGAAGCTAA+CGG | + | chr8.3:47999588-47999607 | MS.gene007870:CDS | 40.0% | |
| AGGAGTTAGGTTCACATTGA+AGG | + | chr8.3:48003061-48003080 | MS.gene007870:CDS | 40.0% | |
| ATTGCACGACAAGGAAATGA+AGG | + | chr8.3:48001636-48001655 | MS.gene007870:CDS | 40.0% | |
| CACTACACTGTACTACTAGT+TGG | + | chr8.3:48002133-48002152 | MS.gene007870:intron | 40.0% | |
| CCACCCCAAAAAAATTTGTC+TGG | + | chr8.3:48000576-48000595 | MS.gene007870:intron | 40.0% | |
| CCTCAAGCAAACAAAGTTTG+TGG | + | chr8.3:48003743-48003762 | MS.gene007870:intron | 40.0% | |
| GAACGAATTGTGAAGGTTTG+AGG | - | chr8.3:48000526-48000545 | None:intergenic | 40.0% | |
| GCATGGACATATCAAAGTGA+TGG | - | chr8.3:48001602-48001621 | None:intergenic | 40.0% | |
| GGAGTTAGGTTCACATTGAA+GGG | + | chr8.3:48003062-48003081 | MS.gene007870:CDS | 40.0% | |
| GGTTACCATTGCACAGAAAT+TGG | + | chr8.3:48003177-48003196 | MS.gene007870:CDS | 40.0% | |
| GGTTCAAAGAGATGAAACCA+TGG | + | chr8.3:48003691-48003710 | MS.gene007870:intron | 40.0% | |
| GTGATGATAACAAACGTTGG+TGG | + | chr8.3:48003104-48003123 | MS.gene007870:CDS | 40.0% | |
| GTGTCTTCCAATTGGAGATT+TGG | + | chr8.3:48003296-48003315 | MS.gene007870:intron | 40.0% | |
| TTGAGGAAAGGACTTGAGAA+AGG | + | chr8.3:48003859-48003878 | MS.gene007870:CDS | 40.0% | |
| TTGTTTGCTTGAGGCAAAGT+GGG | - | chr8.3:48003737-48003756 | None:intergenic | 40.0% | |
| TTTCACATGAAGAGCCTCTT+TGG | - | chr8.3:48003809-48003828 | None:intergenic | 40.0% | |
| TTTGTTTGCTTGAGGCAAAG+TGG | - | chr8.3:48003738-48003757 | None:intergenic | 40.0% | |
| ! | AGCACTATGCTTTTCAGAGA+AGG | + | chr8.3:48001435-48001454 | MS.gene007870:CDS | 40.0% |
| ! | ATATCAAAGTGATGGTGTGG+AGG | - | chr8.3:48001594-48001613 | None:intergenic | 40.0% |
| ! | ATGGCCTACCCATTATTTCT+GGG | + | chr8.3:47999987-48000006 | MS.gene007870:intron | 40.0% |
| ! | CCACAAACTTTGTTTGCTTG+AGG | - | chr8.3:48003746-48003765 | None:intergenic | 40.0% |
| ! | GACATATCAAAGTGATGGTG+TGG | - | chr8.3:48001597-48001616 | None:intergenic | 40.0% |
| ! | TATGCTTTTCAGAGAAGGTG+AGG | + | chr8.3:48001440-48001459 | MS.gene007870:CDS | 40.0% |
| !! | CGGGATATTACAGTGTTGAT+TGG | - | chr8.3:48000135-48000154 | None:intergenic | 40.0% |
| !! | GAAAGCGTTTCAGAAAAAGG+TGG | - | chr8.3:48000063-48000082 | None:intergenic | 40.0% |
| !! | GAGGAAAGCGTTTCAGAAAA+AGG | - | chr8.3:48000066-48000085 | None:intergenic | 40.0% |
| !! | TGCAAGGCACTTTTACTGTT+TGG | + | chr8.3:48000361-48000380 | MS.gene007870:intron | 40.0% |
| !!! | CCAGACAAATTTTTTTGGGG+TGG | - | chr8.3:48000579-48000598 | None:intergenic | 40.0% |
| !!! | CGACTTCTAAGACACCATTT+TGG | - | chr8.3:48001510-48001529 | None:intergenic | 40.0% |
| !!! | CGGAGCCAGACAAATTTTTT+TGG | - | chr8.3:48000584-48000603 | None:intergenic | 40.0% |
| AAAGTTTGTGGACAGTCTCG+GGG | + | chr8.3:48003755-48003774 | MS.gene007870:intron | 45.0% | |
| AACGCTCATGCAACGTTCTA+TGG | + | chr8.3:47999618-47999637 | MS.gene007870:CDS | 45.0% | |
| AATCAAAGTCCAACCAGCCT+TGG | + | chr8.3:47999645-47999664 | MS.gene007870:CDS | 45.0% | |
| AATGCGAAAGAAAGCAGGCA+TGG | - | chr8.3:48001619-48001638 | None:intergenic | 45.0% | |
| ACATGAAGAGCCTCTTTGGA+GGG | - | chr8.3:48003805-48003824 | None:intergenic | 45.0% | |
| ACGCTCATGCAACGTTCTAT+GGG | + | chr8.3:47999619-47999638 | MS.gene007870:CDS | 45.0% | |
| AGAGGCTCTTCATGTGAAAG+GGG | + | chr8.3:48003810-48003829 | MS.gene007870:CDS | 45.0% | |
| AGGGTAGCATGCAAAAGAAG+AGG | + | chr8.3:48003038-48003057 | MS.gene007870:intron | 45.0% | |
| CAAAGTTTGTGGACAGTCTC+GGG | + | chr8.3:48003754-48003773 | MS.gene007870:intron | 45.0% | |
| CACCATCCTCCATGATTGTT+TGG | - | chr8.3:48001567-48001586 | None:intergenic | 45.0% | |
| CATCCTCCATGATTGTTTGG+AGG | - | chr8.3:48001564-48001583 | None:intergenic | 45.0% | |
| CATGGCCTACCCATTATTTC+TGG | + | chr8.3:47999986-48000005 | MS.gene007870:intron | 45.0% | |
| CGTTTCAGAAAAAGGTGGGA+TGG | - | chr8.3:48000058-48000077 | None:intergenic | 45.0% | |
| CTCCAAACAATCATGGAGGA+TGG | + | chr8.3:48001562-48001581 | MS.gene007870:CDS | 45.0% | |
| GAAACTGGATAACAGTCACG+GGG | + | chr8.3:48000307-48000326 | MS.gene007870:intron | 45.0% | |
| GATACCTTTCATGCTGGGTT+TGG | + | chr8.3:48001393-48001412 | MS.gene007870:CDS | 45.0% | |
| GCAAAAGAAGAGGAGGAGTT+AGG | + | chr8.3:48003048-48003067 | MS.gene007870:CDS | 45.0% | |
| GTAGCATGCAAAAGAAGAGG+AGG | + | chr8.3:48003041-48003060 | MS.gene007870:CDS | 45.0% | |
| GTCATAACTCATACCAAGGC+TGG | - | chr8.3:47999661-47999680 | None:intergenic | 45.0% | |
| TAACTCATACCAAGGCTGGT+TGG | - | chr8.3:47999657-47999676 | None:intergenic | 45.0% | |
| TGAAACGTCAGCAAAGACCA+TGG | - | chr8.3:48003711-48003730 | None:intergenic | 45.0% | |
| TGAAGGTTTGAGGGAAAGCT+TGG | - | chr8.3:48000516-48000535 | None:intergenic | 45.0% | |
| TGGATAAGAGGTTCCAGAAG+TGG | + | chr8.3:48003149-48003168 | MS.gene007870:CDS | 45.0% | |
| TGTCCTCCAAACAATCATGG+AGG | + | chr8.3:48001558-48001577 | MS.gene007870:CDS | 45.0% | |
| TTCAGAGAAGGTGAGGTTTG+TGG | + | chr8.3:48001447-48001466 | MS.gene007870:CDS | 45.0% | |
| TTCTTTCGCATTGCACGACA+AGG | + | chr8.3:48001627-48001646 | MS.gene007870:CDS | 45.0% | |
| ! | AAAGCTTGGTGGAATGGAGA+TGG | - | chr8.3:48000502-48000521 | None:intergenic | 45.0% |
| ! | AAGCTTGGTGGAATGGAGAT+GGG | - | chr8.3:48000501-48000520 | None:intergenic | 45.0% |
| ! | AAGGCTGGTTGGACTTTGAT+TGG | - | chr8.3:47999646-47999665 | None:intergenic | 45.0% |
| ! | ATAAAGGGGGTGTGGATAAG+AGG | + | chr8.3:48003137-48003156 | MS.gene007870:CDS | 45.0% |
| ! | TCAAATTGGTACCGGAGAGT+AGG | + | chr8.3:48002935-48002954 | MS.gene007870:intron | 45.0% |
| ! | TCTGAAACGCTTTCCTCTCT+TGG | + | chr8.3:48000069-48000088 | MS.gene007870:intron | 45.0% |
| !! | ATAACAAACGTTGGTGGCAG+CGG | + | chr8.3:48003110-48003129 | MS.gene007870:CDS | 45.0% |
| !! | CAGAAATAATGGGTAGGCCA+TGG | - | chr8.3:47999988-48000007 | None:intergenic | 45.0% |
| !! | TAAAATTAAATAATTAACTT+TGG | + | chr8.3:48001099-48001118 | MS.gene007870:intron | 5.0% |
| !!! | TTTTTTATCTATAATTTTAT+TGG | + | chr8.3:47999724-47999743 | MS.gene007870:intron | 5.0% |
| AGAGGACGCGAGAGATAGAA+AGG | - | chr8.3:48000409-48000428 | None:intergenic | 50.0% | |
| AGGTTTGAGGGAAAGCTTGG+TGG | - | chr8.3:48000513-48000532 | None:intergenic | 50.0% | |
| CAACTGAAGGGGCCATGATT+TGG | + | chr8.3:48003670-48003689 | MS.gene007870:intron | 50.0% | |
| CACACCAAACCCAGCATGAA+AGG | - | chr8.3:48001400-48001419 | None:intergenic | 50.0% | |
| CACATGAAGAGCCTCTTTGG+AGG | - | chr8.3:48003806-48003825 | None:intergenic | 50.0% | |
| CAGAAAAAGGTGGGATGGCA+TGG | - | chr8.3:48000053-48000072 | None:intergenic | 50.0% | |
| CGCTCATGCAACGTTCTATG+GGG | + | chr8.3:47999620-47999639 | MS.gene007870:CDS | 50.0% | |
| CGTGCAATGCGAAAGAAAGC+AGG | - | chr8.3:48001624-48001643 | None:intergenic | 50.0% | |
| CTCTCCGGTACCAATTTGAG+TGG | - | chr8.3:48002934-48002953 | None:intergenic | 50.0% | |
| GCTCCCCAATTTCTGTGCAA+TGG | - | chr8.3:48003185-48003204 | None:intergenic | 50.0% | |
| GGCAAAGCAGTGCAGATCTA+AGG | + | chr8.3:48003210-48003229 | MS.gene007870:CDS | 50.0% | |
| GGGGTCATCTGTCAGAGAAA+GGG | + | chr8.3:48003774-48003793 | MS.gene007870:CDS | 50.0% | |
| GGTGGCAGCGGTGATATAAA+GGG | + | chr8.3:48003122-48003141 | MS.gene007870:CDS | 50.0% | |
| GGTTGTCACAAAGCCACTAC+TGG | + | chr8.3:48002846-48002865 | MS.gene007870:intron | 50.0% | |
| GTGGCAGCGGTGATATAAAG+GGG | + | chr8.3:48003123-48003142 | MS.gene007870:CDS | 50.0% | |
| TATGTCACCACAGCCAAGAG+AGG | - | chr8.3:48000085-48000104 | None:intergenic | 50.0% | |
| TCCACGTTGAAGCTAACGGT+TGG | + | chr8.3:47999592-47999611 | MS.gene007870:CDS | 50.0% | |
| TGGCAGCGGTGATATAAAGG+GGG | + | chr8.3:48003124-48003143 | MS.gene007870:CDS | 50.0% | |
| TGGTAACCAAGCTCCACTTC+TGG | - | chr8.3:48003165-48003184 | None:intergenic | 50.0% | |
| TGGTGGCAGCGGTGATATAA+AGG | + | chr8.3:48003121-48003140 | MS.gene007870:CDS | 50.0% | |
| TGTGTGGATCTCTCCAGTAG+TGG | - | chr8.3:48002862-48002881 | None:intergenic | 50.0% | |
| ! | CATGAAGAGCCTCTTTGGAG+GGG | - | chr8.3:48003804-48003823 | None:intergenic | 50.0% |
| ! | TGAGGGAAAGCTTGGTGGAA+TGG | - | chr8.3:48000508-48000527 | None:intergenic | 50.0% |
| ACGCTTTCCTCTCTTGGCTG+TGG | + | chr8.3:48000075-48000094 | MS.gene007870:intron | 55.0% | |
| CGGGGTCATCTGTCAGAGAA+AGG | + | chr8.3:48003773-48003792 | MS.gene007870:CDS | 55.0% | |
| CGTGAGAGAGTAGAGGAGGA+AGG | - | chr8.3:48000472-48000491 | None:intergenic | 55.0% | |
| GAGGTTCCAGAAGTGGAGCT+TGG | + | chr8.3:48003156-48003175 | MS.gene007870:CDS | 55.0% | |
| GCGGTGATATAAAGGGGGTG+TGG | + | chr8.3:48003129-48003148 | MS.gene007870:CDS | 55.0% | |
| GGTGGAATGGAGATGGGAAG+AGG | - | chr8.3:48000495-48000514 | None:intergenic | 55.0% | |
| TCCTACTCGCTCCTACTCTC+CGG | - | chr8.3:48002949-48002968 | None:intergenic | 55.0% | |
| ! | GAAGAGGCGTGAGAGAGTAG+AGG | - | chr8.3:48000479-48000498 | None:intergenic | 55.0% |
| ! | GCCAACCGTTAGCTTCAACG+TGG | - | chr8.3:47999596-47999615 | None:intergenic | 55.0% |
| AAGGGAGAGCCCCTCCAAAG+AGG | + | chr8.3:48003792-48003811 | MS.gene007870:CDS | 60.0% | |
| ACCGGAGAGTAGGAGCGAGT+AGG | + | chr8.3:48002945-48002964 | MS.gene007870:intron | 60.0% | |
| AGCTACACCAGGACTGGGGT+AGG | + | chr8.3:47999962-47999981 | MS.gene007870:intron | 60.0% | |
| GAGGCGTGAGAGAGTAGAGG+AGG | - | chr8.3:48000476-48000495 | None:intergenic | 60.0% | |
| ! | AACAGTGGCGGAGCTACACC+AGG | + | chr8.3:47999951-47999970 | MS.gene007870:intron | 60.0% |
| ACCAGGACTGGGGTAGGCCA+TGG | + | chr8.3:47999968-47999987 | MS.gene007870:intron | 65.0% | |
| GCGGAGCTACACCAGGACTG+GGG | + | chr8.3:47999958-47999977 | MS.gene007870:intron | 65.0% | |
| GGCGGAGCTACACCAGGACT+GGG | + | chr8.3:47999957-47999976 | MS.gene007870:intron | 65.0% | |
| TGGCGGAGCTACACCAGGAC+TGG | + | chr8.3:47999956-47999975 | MS.gene007870:intron | 65.0% | |
| GCCATGGCCTACCCCAGTCC+TGG | - | chr8.3:47999972-47999991 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 47999519 | 48003897 | 47999519 | ID=MS.gene007870 |
| chr8.3 | mRNA | 47999519 | 48003897 | 47999519 | ID=MS.gene007870.t1;Parent=MS.gene007870 |
| chr8.3 | exon | 47999519 | 47999666 | 47999519 | ID=MS.gene007870.t1.exon1;Parent=MS.gene007870.t1 |
| chr8.3 | CDS | 47999519 | 47999666 | 47999519 | ID=cds.MS.gene007870.t1;Parent=MS.gene007870.t1 |
| chr8.3 | exon | 48001373 | 48001682 | 48001373 | ID=MS.gene007870.t1.exon2;Parent=MS.gene007870.t1 |
| chr8.3 | CDS | 48001373 | 48001682 | 48001373 | ID=cds.MS.gene007870.t1;Parent=MS.gene007870.t1 |
| chr8.3 | exon | 48003040 | 48003269 | 48003040 | ID=MS.gene007870.t1.exon3;Parent=MS.gene007870.t1 |
| chr8.3 | CDS | 48003040 | 48003269 | 48003040 | ID=cds.MS.gene007870.t1;Parent=MS.gene007870.t1 |
| chr8.3 | exon | 48003770 | 48003897 | 48003770 | ID=MS.gene007870.t1.exon4;Parent=MS.gene007870.t1 |
| chr8.3 | CDS | 48003770 | 48003897 | 48003770 | ID=cds.MS.gene007870.t1;Parent=MS.gene007870.t1 |
| Gene Sequence |
| Protein sequence |
