AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007953.t1 MTR_3g072630 96.037 328 10 2 1 325 1 328 0.0 634
MS.gene007953.t1 MTR_3g072630 96.012 326 10 2 1 323 1 326 0.0 629
MS.gene007953.t1 MTR_5g088720 34.252 254 145 5 20 266 7 245 3.59e-42 149
MS.gene007953.t1 MTR_5g088720 34.252 254 145 5 20 266 12 250 4.53e-42 149
MS.gene007953.t1 MTR_5g088720 34.252 254 145 5 20 266 53 291 1.15e-41 149
MS.gene007953.t1 MTR_1g051105 44.872 156 64 2 169 324 107 240 2.83e-40 142
MS.gene007953.t1 MTR_2g007340 33.684 285 147 9 1 274 1 254 5.22e-37 135
MS.gene007953.t1 MTR_0067s0100 31.419 296 157 8 20 301 8 271 1.25e-36 133
MS.gene007953.t1 MTR_1g114320 31.183 279 148 10 18 284 11 257 6.26e-35 129
MS.gene007953.t1 MTR_6g079660 45.455 121 58 3 156 273 172 287 5.31e-32 123
MS.gene007953.t1 MTR_3g068005 30.588 255 155 6 20 269 7 244 3.61e-31 121
MS.gene007953.t1 MTR_3g083480 30.027 373 161 16 20 320 9 353 1.03e-30 119
MS.gene007953.t1 MTR_2g097620 28.077 260 151 4 20 274 14 242 8.33e-30 116
MS.gene007953.t1 MTR_4g064570 29.365 252 136 5 20 266 12 226 1.60e-28 113
MS.gene007953.t1 MTR_5g080350 39.655 116 61 1 172 278 135 250 1.23e-25 105
MS.gene007953.t1 MTR_7g074170 39.130 115 67 2 162 273 283 397 2.51e-23 100
MS.gene007953.t1 MTR_1g114620 43.519 108 56 2 171 275 213 318 8.76e-22 94.4
MS.gene007953.t1 MTR_5g041310 35.252 139 78 4 137 272 37 166 8.48e-21 89.4
MS.gene007953.t1 MTR_5g041330 34.091 132 77 3 141 272 35 156 9.77e-21 89.4
MS.gene007953.t1 MTR_6g032960 39.423 104 54 2 172 271 188 286 1.68e-19 87.8
MS.gene007953.t1 MTR_4g110100 33.929 112 71 2 165 273 301 412 8.33e-17 80.9
MS.gene007953.t1 MTR_3g025510 35.514 107 68 1 164 270 49 154 1.66e-14 70.5
MS.gene007953.t1 MTR_3g088080 37.838 74 44 1 196 269 15 86 1.91e-14 68.2
MS.gene007953.t1 MTR_6g016350 35.714 98 60 2 179 273 266 363 8.32e-14 72.0
MS.gene007953.t1 MTR_5g058530 49.153 59 29 1 208 265 210 268 2.36e-13 70.1
MS.gene007953.t1 MTR_2g061790 35.849 106 58 2 221 317 109 213 8.44e-13 67.4
MS.gene007953.t1 MTR_1g014710 36.486 74 44 1 195 265 204 277 1.62e-12 67.4
MS.gene007953.t1 MTR_7g116200 36.585 82 51 1 183 263 55 136 3.46e-12 64.3
MS.gene007953.t1 MTR_5g022920 36.250 80 47 2 190 265 155 234 1.34e-11 63.9
MS.gene007953.t1 MTR_2g078440 43.478 69 38 1 197 264 228 296 6.65e-11 62.8
MS.gene007953.t1 MTR_8g037150 36.986 73 42 2 197 265 168 240 7.20e-11 62.0
MS.gene007953.t1 MTR_4g106960 43.939 66 28 1 197 262 163 219 7.83e-11 62.8
MS.gene007953.t1 MTR_4g106960 43.939 66 28 1 197 262 163 219 7.90e-11 62.8
MS.gene007953.t1 MTR_4g106960 43.939 66 28 1 197 262 220 276 9.39e-11 62.8
MS.gene007953.t1 MTR_4g106960 43.939 66 28 1 197 262 220 276 9.82e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007953.t1 AT1G60360 42.857 322 166 10 1 311 1 315 2.96e-67 214
MS.gene007953.t1 AT3G56580 35.915 284 154 9 20 301 8 265 7.24e-45 155
MS.gene007953.t1 AT3G56580 35.915 284 154 9 20 301 8 265 7.24e-45 155
MS.gene007953.t1 AT3G56580 35.915 284 154 9 20 301 8 265 7.24e-45 155
MS.gene007953.t1 AT2G40830 35.798 257 132 10 20 269 8 238 2.84e-41 146
MS.gene007953.t1 AT2G40830 35.798 257 132 10 20 269 8 238 2.84e-41 146
MS.gene007953.t1 AT2G40830 35.798 257 132 10 20 269 8 238 2.84e-41 146
MS.gene007953.t1 AT2G40830 35.798 257 132 10 20 269 8 238 2.84e-41 146
MS.gene007953.t1 AT3G19950 34.701 268 147 9 18 274 19 269 3.12e-41 146
MS.gene007953.t1 AT3G19950 34.701 268 147 9 18 274 77 327 6.00e-41 147
MS.gene007953.t1 AT3G19950 34.701 268 147 9 18 274 77 327 6.00e-41 147
MS.gene007953.t1 AT1G55530 30.116 259 145 8 20 270 9 239 1.20e-30 118
MS.gene007953.t1 AT5G56340 45.968 124 60 2 152 273 193 311 1.46e-30 119
MS.gene007953.t1 AT1G55530 29.455 275 159 9 20 270 9 272 2.07e-30 118
MS.gene007953.t1 AT1G55530 29.455 275 159 9 20 270 9 272 2.07e-30 118
MS.gene007953.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.83e-30 116
MS.gene007953.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.83e-30 116
MS.gene007953.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.83e-30 116
MS.gene007953.t1 AT3G13430 49.038 104 46 2 172 272 177 276 5.83e-30 116
MS.gene007953.t1 AT3G10815 51.685 89 42 1 179 266 78 166 6.94e-28 107
MS.gene007953.t1 AT2G39720 29.348 276 143 8 20 272 6 252 3.29e-26 107
MS.gene007953.t1 AT2G39720 29.348 276 143 8 20 272 6 252 3.29e-26 107
MS.gene007953.t1 AT3G46620 30.000 270 144 9 20 275 31 269 3.52e-26 107
MS.gene007953.t1 AT1G68180 43.902 123 64 3 193 313 110 229 1.98e-25 102
MS.gene007953.t1 AT5G59550 36.842 133 75 2 163 288 241 371 7.23e-24 102
MS.gene007953.t1 AT5G59550 41.441 111 56 2 163 266 136 244 8.24e-24 101
MS.gene007953.t1 AT4G26400 44.330 97 47 2 172 266 195 286 1.93e-23 99.4
MS.gene007953.t1 AT4G26400 44.330 97 47 2 172 266 195 286 1.93e-23 99.4
MS.gene007953.t1 AT5G01980 39.640 111 65 1 165 273 292 402 2.66e-22 97.4
MS.gene007953.t1 AT3G60080 41.905 105 45 2 202 298 142 238 8.91e-19 85.5
MS.gene007953.t1 AT5G08139 35.833 120 67 3 164 273 242 361 1.31e-18 85.9
MS.gene007953.t1 AT2G44330 48.101 79 35 1 202 274 71 149 1.51e-18 82.4
MS.gene007953.t1 AT5G15820 34.314 102 64 2 168 266 235 336 3.95e-17 81.3
MS.gene007953.t1 AT1G26800 33.571 140 75 5 178 316 74 196 2.84e-16 76.6
MS.gene007953.t1 AT5G60820 43.590 78 40 1 193 266 340 417 3.74e-16 79.0
MS.gene007953.t1 AT3G02340 36.538 104 65 1 188 290 301 404 4.24e-16 79.0
MS.gene007953.t1 AT3G02340 36.538 104 65 1 188 290 301 404 4.24e-16 79.0
MS.gene007953.t1 AT1G14200 36.471 85 54 0 182 266 70 154 7.92e-15 72.0
MS.gene007953.t1 AT5G20910 37.864 103 56 3 178 274 183 283 8.71e-15 74.3
MS.gene007953.t1 AT5G64920 33.962 106 64 1 176 275 206 311 2.71e-14 73.2
MS.gene007953.t1 AT4G24015 49.206 63 27 2 218 275 102 164 7.82e-12 63.5
MS.gene007953.t1 AT2G03000 37.500 72 40 1 196 267 461 527 1.73e-11 65.5
MS.gene007953.t1 AT4G31450 46.296 54 29 0 216 269 443 496 3.66e-11 64.3
MS.gene007953.t1 AT4G31450 46.296 54 29 0 216 269 443 496 3.66e-11 64.3
MS.gene007953.t1 AT2G01735 34.483 87 50 2 188 271 275 357 5.52e-11 63.2
MS.gene007953.t1 AT1G04790 35.106 94 58 2 172 265 543 633 7.68e-11 63.5
MS.gene007953.t1 AT4G35840 37.037 81 46 2 190 265 156 236 9.38e-11 61.6
MS.gene007953.t1 AT3G19910 37.179 78 42 1 200 270 260 337 9.52e-11 62.4

Find 106 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGCGTCGGGTTTGGGTTTC+TGG -0.036611 3.4:+71497180 None:intergenic
CATGACGTGGGCGTCGGGTT+TGG 0.229750 3.4:+71497172 None:intergenic
GCTTCTAGTAAACGCGCTTC+TGG 0.237677 3.4:+71497243 None:intergenic
ATGACGTGGGCGTCGGGTTT+GGG 0.249529 3.4:+71497173 None:intergenic
ATTGCGTTTATACCTCTTTC+CGG 0.279704 3.4:+71496859 None:intergenic
CTGGTTCTGCTTCAAGAATA+AGG 0.284347 3.4:-71496504 MS.gene007953:CDS
GGACAAGAATTTCGTCTCTT+TGG 0.293654 3.4:-71496576 MS.gene007953:CDS
GTTCAGGTTCAGTTTGTGTT+TGG 0.298514 3.4:+71497100 None:intergenic
TGTCAAGAAGAGTTTGAAAT+TGG 0.316838 3.4:-71496781 MS.gene007953:CDS
GGAATCTCTTGACGACAAAT+TGG 0.318716 3.4:+71496676 None:intergenic
CGGTGTTGGATCCCGGGTTC+AGG 0.338023 3.4:+71497084 None:intergenic
GCATCAACGCCGCGTGGAAT+TGG 0.345689 3.4:+71496964 None:intergenic
CTCTTTGGCCTTTCCATGGC+AGG 0.345906 3.4:-71496561 MS.gene007953:CDS
TGTTTATTTCACATATGAAT+TGG 0.346384 3.4:+71497313 None:intergenic
TTCAGGTTCAGTTTGTGTTT+GGG 0.363394 3.4:+71497101 None:intergenic
CCAGAACCATTGTCTCTTTG+AGG 0.367252 3.4:+71496523 None:intergenic
AAACGTGTTTGAATCGGAAT+TGG 0.369421 3.4:+71497020 None:intergenic
GGCGTCGGGTTTGGGTTTCT+GGG 0.372254 3.4:+71497181 None:intergenic
TCAAACTCTTCTTGACAAAC+AGG 0.384860 3.4:+71496787 None:intergenic
CTTCTAGTAAACGCGCTTCT+GGG 0.389670 3.4:+71497244 None:intergenic
TGGTTCTGCTTCAAGAATAA+GGG 0.395926 3.4:-71496503 MS.gene007953:CDS
TGTGGTGATGAAGGTGGTGG+TGG 0.400189 3.4:-71496625 MS.gene007953:CDS
CCTCAAAGAGACAATGGTTC+TGG 0.410933 3.4:-71496523 MS.gene007953:CDS
TGGTTGTTTATTCTCTCTCT+TGG 0.415418 3.4:+71497435 None:intergenic
CCTCTTTCCGGCACCGGTGG+TGG 0.418881 3.4:+71496871 None:intergenic
CGATTCAAACACGTTTCAAC+CGG 0.424278 3.4:-71497013 MS.gene007953:CDS
GGGTTAAAGCGACGGATGGG+TGG 0.432478 3.4:+71497201 None:intergenic
GTTCAGTTTGTGTTTGGGTT+GGG 0.434037 3.4:+71497106 None:intergenic
GGTGATGAAGGTGGTGGTGG+AGG 0.434209 3.4:-71496622 MS.gene007953:CDS
ATCAAGTCAGAGGAGTTATA+TGG 0.436014 3.4:+71497354 None:intergenic
TGCAGACGGTGCGGTTGCAT+TGG 0.439465 3.4:+71497382 None:intergenic
TTGTTTATTCTCTCTCTTGG+AGG 0.443470 3.4:+71497438 None:intergenic
ATGAAGGTGGTGGTGGAGGT+AGG 0.446302 3.4:-71496618 MS.gene007953:CDS
TCCAACACCGTCCACGTACA+TGG 0.446385 3.4:-71497071 MS.gene007953:CDS
GGTTCAGTTTGTGTTTGGGT+TGG 0.447683 3.4:+71497105 None:intergenic
GGCCTTTCCATGGCAGGTAT+CGG 0.448754 3.4:-71496555 MS.gene007953:CDS
TTCTGGGTTAAAGCGACGGA+TGG 0.449024 3.4:+71497197 None:intergenic
ACTCTGATTGTATTGTTCCA+TGG 0.456363 3.4:-71496720 MS.gene007953:CDS
CAAGAAGAGTTTGAAATTGG+TGG 0.457438 3.4:-71496778 MS.gene007953:CDS
ACGTGGACGGTGTTGGATCC+CGG 0.457633 3.4:+71497077 None:intergenic
CGTGGACGGTGTTGGATCCC+GGG 0.458200 3.4:+71497078 None:intergenic
TTTATACCTCTTTCCGGCAC+CGG 0.460655 3.4:+71496865 None:intergenic
TATGAATTGGCCAAAGCAGC+GGG 0.463741 3.4:+71497326 None:intergenic
GTTCCAGTGCGCCGTCGGAC+AGG 0.464229 3.4:-71497138 MS.gene007953:CDS
TTGAAATTGGTGGTGAAGCG+AGG 0.464387 3.4:-71496768 MS.gene007953:CDS
TCTCCTGTCCGACGGCGCAC+TGG 0.471289 3.4:+71497135 None:intergenic
TGTGGCATGACGTGGGCGTC+GGG 0.472184 3.4:+71497167 None:intergenic
GCAGGGTCCACCACCGGTGC+CGG 0.475669 3.4:-71496878 MS.gene007953:CDS
GTGTGGCATGACGTGGGCGT+CGG 0.475763 3.4:+71497166 None:intergenic
GTAGGTTACAAAGGTGTTTG+AGG 0.480521 3.4:-71496600 MS.gene007953:CDS
CCACCACCGGTGCCGGAAAG+AGG 0.484120 3.4:-71496871 MS.gene007953:CDS
CGGTTGAAACGTGTTTGAAT+CGG 0.491561 3.4:+71497014 None:intergenic
ACACAAACTGAACCTGAACC+CGG 0.494798 3.4:-71497096 MS.gene007953:CDS
GCACCGGTGGTGGACCCTGC+CGG 0.504051 3.4:+71496881 None:intergenic
GTGAAGTCTACGACGAGTCT+TGG 0.504527 3.4:+71497282 None:intergenic
TCGTCTCTTTGGCCTTTCCA+TGG 0.511179 3.4:-71496565 MS.gene007953:CDS
ACCAAATAACAGAAAATGAC+CGG 0.519700 3.4:-71496900 MS.gene007953:CDS
ATTGGTCCTTGTCGTCCACC+TGG 0.519875 3.4:+71496982 None:intergenic
TCTACGACGAGTCTTGGTCT+TGG 0.525811 3.4:+71497288 None:intergenic
TTTGAATCGGAATTGGAAGA+AGG 0.528606 3.4:+71497027 None:intergenic
AGTAAACGCGCTTCTGGGGA+AGG 0.533512 3.4:+71497249 None:intergenic
TCTGGGTTAAAGCGACGGAT+GGG 0.546330 3.4:+71497198 None:intergenic
GAAAATGAGTGTGGTGATGA+AGG 0.548010 3.4:-71496634 MS.gene007953:CDS
GTGGTGGAGGTAGGTTACAA+AGG 0.549094 3.4:-71496609 MS.gene007953:CDS
AATAACAGAAAATGACCGGC+AGG 0.549894 3.4:-71496896 MS.gene007953:CDS
GATGGGTGGGTCAAGCATGA+TGG 0.552583 3.4:+71497215 None:intergenic
GGGTTTCTGGGTTAAAGCGA+CGG 0.560254 3.4:+71497193 None:intergenic
GGTTAAAGCGACGGATGGGT+GGG 0.561633 3.4:+71497202 None:intergenic
TGAAATTGGTGGTGAAGCGA+GGG 0.569510 3.4:-71496767 MS.gene007953:CDS
GAGTGATATATATGTTTACA+TGG 0.571725 3.4:+71496739 None:intergenic
TGACCGGCAGGGTCCACCAC+CGG 0.573125 3.4:-71496884 MS.gene007953:CDS
ACTTCTTGTGTGGCATGACG+TGG 0.573297 3.4:+71497159 None:intergenic
GCGCACTGGAACTTCTTGTG+TGG 0.576661 3.4:+71497149 None:intergenic
CTCCGATACCTGCCATGGAA+AGG 0.580627 3.4:+71496553 None:intergenic
ATACCTCTTTCCGGCACCGG+TGG 0.585012 3.4:+71496868 None:intergenic
AAGAAGTTCCAGTGCGCCGT+CGG 0.587134 3.4:-71497143 MS.gene007953:CDS
TTCTAGTAAACGCGCTTCTG+GGG 0.588626 3.4:+71497245 None:intergenic
GGTTCTGCTTCAAGAATAAG+GGG 0.590069 3.4:-71496502 MS.gene007953:CDS
AGAGTTGAAAGTTTCTACGT+TGG 0.598580 3.4:+71497415 None:intergenic
CCCATGTACGTGGACGGTGT+TGG 0.598601 3.4:+71497070 None:intergenic
GGTGATGATCTCCTGTCCGA+CGG 0.599729 3.4:+71497127 None:intergenic
GAACTCTCCGATACCTGCCA+TGG 0.605766 3.4:+71496548 None:intergenic
GAATTGGAAGAAGGATCCAC+AGG 0.610104 3.4:+71497036 None:intergenic
GAATTGTGAAGTCTAAGCCA+TGG 0.610327 3.4:+71496703 None:intergenic
GGTTACAAAGGTGTTTGAGG+TGG 0.613541 3.4:-71496597 MS.gene007953:CDS
TCTATTAGTTCGTTAAAACC+CGG 0.613916 3.4:+71496922 None:intergenic
CACAAACTGAACCTGAACCC+GGG 0.615987 3.4:-71497095 MS.gene007953:CDS
ATATGAATTGGCCAAAGCAG+CGG 0.622222 3.4:+71497325 None:intergenic
GTTATATGGTGCAATGCAGA+CGG 0.623975 3.4:+71497368 None:intergenic
GTTCATCCTCAAAGAGACAA+TGG 0.630874 3.4:-71496529 MS.gene007953:CDS
ATGGGTCATTCTACAACCTG+TGG 0.633466 3.4:-71497052 MS.gene007953:CDS
GAGTGTGGTGATGAAGGTGG+TGG 0.634645 3.4:-71496628 MS.gene007953:CDS
TGAATTGGCCAAAGCAGCGG+GGG 0.634695 3.4:+71497328 None:intergenic
TCTCTTGCATCAACGCCGCG+TGG 0.635767 3.4:+71496958 None:intergenic
TTCTGGGGAAGGATCATGTG+CGG 0.637567 3.4:+71497260 None:intergenic
CCAACACCGTCCACGTACAT+GGG 0.643084 3.4:-71497070 MS.gene007953:CDS
TCATCATCAGAAGAAGAACA+AGG 0.644794 3.4:+71496655 None:intergenic
AATGAGTGTGGTGATGAAGG+TGG 0.645504 3.4:-71496631 MS.gene007953:CDS
TGTAGAATGACCCATGTACG+TGG 0.664295 3.4:+71497060 None:intergenic
CTTCTTGTGTGGCATGACGT+GGG 0.672360 3.4:+71497160 None:intergenic
ATAACAGAAAATGACCGGCA+GGG 0.686987 3.4:-71496895 MS.gene007953:CDS
ATGAATTGGCCAAAGCAGCG+GGG 0.696463 3.4:+71497327 None:intergenic
GAATGACCCATGTACGTGGA+CGG 0.707803 3.4:+71497064 None:intergenic
TCTGATGATGAAAATGAGTG+TGG 0.710936 3.4:-71496643 MS.gene007953:CDS
ATGGTGCAATGCAGACGGTG+CGG 0.727040 3.4:+71497373 None:intergenic
CGACAAGGACCAATTCCACG+CGG 0.788216 3.4:-71496973 MS.gene007953:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTATTTCACATATGAAT+TGG + chr3.4:71496635-71496654 None:intergenic 20.0%
! GAGTGATATATATGTTTACA+TGG + chr3.4:71497209-71497228 None:intergenic 25.0%
ACCAAATAACAGAAAATGAC+CGG - chr3.4:71497045-71497064 MS.gene007953:CDS 30.0%
TCTATTAGTTCGTTAAAACC+CGG + chr3.4:71497026-71497045 None:intergenic 30.0%
! TGTCAAGAAGAGTTTGAAAT+TGG - chr3.4:71497164-71497183 MS.gene007953:CDS 30.0%
!!! AAGAGACTATTTTTTTGGAC+CGG - chr3.4:71497004-71497023 MS.gene007953:CDS 30.0%
!!! GATGCAAGAGACTATTTTTT+TGG - chr3.4:71496999-71497018 MS.gene007953:CDS 30.0%
AAACGTGTTTGAATCGGAAT+TGG + chr3.4:71496928-71496947 None:intergenic 35.0%
ACTCTGATTGTATTGTTCCA+TGG - chr3.4:71497225-71497244 MS.gene007953:CDS 35.0%
AGAGTTGAAAGTTTCTACGT+TGG + chr3.4:71496533-71496552 None:intergenic 35.0%
ATCAAGTCAGAGGAGTTATA+TGG + chr3.4:71496594-71496613 None:intergenic 35.0%
ATTGCGTTTATACCTCTTTC+CGG + chr3.4:71497089-71497108 None:intergenic 35.0%
TCAAACTCTTCTTGACAAAC+AGG + chr3.4:71497161-71497180 None:intergenic 35.0%
TCATCATCAGAAGAAGAACA+AGG + chr3.4:71497293-71497312 None:intergenic 35.0%
TGGTTGTTTATTCTCTCTCT+TGG + chr3.4:71496513-71496532 None:intergenic 35.0%
TTGTTTATTCTCTCTCTTGG+AGG + chr3.4:71496510-71496529 None:intergenic 35.0%
TTTGAATCGGAATTGGAAGA+AGG + chr3.4:71496921-71496940 None:intergenic 35.0%
! CAAGAAGAGTTTGAAATTGG+TGG - chr3.4:71497167-71497186 MS.gene007953:CDS 35.0%
! TCTGATGATGAAAATGAGTG+TGG - chr3.4:71497302-71497321 MS.gene007953:CDS 35.0%
! TGGTTCTGCTTCAAGAATAA+GGG - chr3.4:71497442-71497461 MS.gene007953:CDS 35.0%
! TTCAGGTTCAGTTTGTGTTT+GGG + chr3.4:71496847-71496866 None:intergenic 35.0%
! TTGCTTTCGATTTTCACTGT+TGG + chr3.4:71497113-71497132 None:intergenic 35.0%
!!! AGAGACTATTTTTTTGGACC+GGG - chr3.4:71497005-71497024 MS.gene007953:CDS 35.0%
AATAACAGAAAATGACCGGC+AGG - chr3.4:71497049-71497068 MS.gene007953:CDS 40.0%
ATAACAGAAAATGACCGGCA+GGG - chr3.4:71497050-71497069 MS.gene007953:CDS 40.0%
ATATGAATTGGCCAAAGCAG+CGG + chr3.4:71496623-71496642 None:intergenic 40.0%
CGATTCAAACACGTTTCAAC+CGG - chr3.4:71496932-71496951 MS.gene007953:CDS 40.0%
CGGTTGAAACGTGTTTGAAT+CGG + chr3.4:71496934-71496953 None:intergenic 40.0%
GAATTGTGAAGTCTAAGCCA+TGG + chr3.4:71497245-71497264 None:intergenic 40.0%
GGAATCTCTTGACGACAAAT+TGG + chr3.4:71497272-71497291 None:intergenic 40.0%
GGACAAGAATTTCGTCTCTT+TGG - chr3.4:71497369-71497388 MS.gene007953:CDS 40.0%
GGTTCTGCTTCAAGAATAAG+GGG - chr3.4:71497443-71497462 MS.gene007953:CDS 40.0%
GTTATATGGTGCAATGCAGA+CGG + chr3.4:71496580-71496599 None:intergenic 40.0%
GTTCATCCTCAAAGAGACAA+TGG - chr3.4:71497416-71497435 MS.gene007953:CDS 40.0%
! GAAAATGAGTGTGGTGATGA+AGG - chr3.4:71497311-71497330 MS.gene007953:CDS 40.0%
! GTTCAGGTTCAGTTTGTGTT+TGG + chr3.4:71496848-71496867 None:intergenic 40.0%
! GTTCAGTTTGTGTTTGGGTT+GGG + chr3.4:71496842-71496861 None:intergenic 40.0%
! TTTCAACCGGTGATTTTTCC+AGG - chr3.4:71496945-71496964 MS.gene007953:CDS 40.0%
!! CTGGTTCTGCTTCAAGAATA+AGG - chr3.4:71497441-71497460 MS.gene007953:CDS 40.0%
!! GCCGGTCATTTTCTGTTATT+TGG + chr3.4:71497049-71497068 None:intergenic 40.0%
!! GTAGGTTACAAAGGTGTTTG+AGG - chr3.4:71497345-71497364 MS.gene007953:CDS 40.0%
ACACAAACTGAACCTGAACC+CGG - chr3.4:71496849-71496868 MS.gene007953:CDS 45.0%
ATGGGTCATTCTACAACCTG+TGG - chr3.4:71496893-71496912 MS.gene007953:CDS 45.0%
CCAGAACCATTGTCTCTTTG+AGG + chr3.4:71497425-71497444 None:intergenic 45.0%
CCTCAAAGAGACAATGGTTC+TGG - chr3.4:71497422-71497441 MS.gene007953:CDS 45.0%
CTTCTAGTAAACGCGCTTCT+GGG + chr3.4:71496704-71496723 None:intergenic 45.0%
GAATTGGAAGAAGGATCCAC+AGG + chr3.4:71496912-71496931 None:intergenic 45.0%
GGTTCAGTTTGTGTTTGGGT+TGG + chr3.4:71496843-71496862 None:intergenic 45.0%
TATGAATTGGCCAAAGCAGC+GGG + chr3.4:71496622-71496641 None:intergenic 45.0%
TGTAGAATGACCCATGTACG+TGG + chr3.4:71496888-71496907 None:intergenic 45.0%
TTCTAGTAAACGCGCTTCTG+GGG + chr3.4:71496703-71496722 None:intergenic 45.0%
TTTATACCTCTTTCCGGCAC+CGG + chr3.4:71497083-71497102 None:intergenic 45.0%
! AATGAGTGTGGTGATGAAGG+TGG - chr3.4:71497314-71497333 MS.gene007953:CDS 45.0%
! ATTTTTCCAGGTGGACGACA+AGG - chr3.4:71496957-71496976 MS.gene007953:CDS 45.0%
!! GGTTACAAAGGTGTTTGAGG+TGG - chr3.4:71497348-71497367 MS.gene007953:CDS 45.0%
!! TGAAATTGGTGGTGAAGCGA+GGG - chr3.4:71497178-71497197 MS.gene007953:CDS 45.0%
!! TTGAAATTGGTGGTGAAGCG+AGG - chr3.4:71497177-71497196 MS.gene007953:CDS 45.0%
ACTTCTTGTGTGGCATGACG+TGG + chr3.4:71496789-71496808 None:intergenic 50.0%
ATGAATTGGCCAAAGCAGCG+GGG + chr3.4:71496621-71496640 None:intergenic 50.0%
CACAAACTGAACCTGAACCC+GGG - chr3.4:71496850-71496869 MS.gene007953:CDS 50.0%
CGTCCACCTGGAAAAATCAC+CGG + chr3.4:71496954-71496973 None:intergenic 50.0%
CTTCTTGTGTGGCATGACGT+GGG + chr3.4:71496788-71496807 None:intergenic 50.0%
GAATGACCCATGTACGTGGA+CGG + chr3.4:71496884-71496903 None:intergenic 50.0%
GCTTCTAGTAAACGCGCTTC+TGG + chr3.4:71496705-71496724 None:intergenic 50.0%
GTGAAGTCTACGACGAGTCT+TGG + chr3.4:71496666-71496685 None:intergenic 50.0%
TCTACGACGAGTCTTGGTCT+TGG + chr3.4:71496660-71496679 None:intergenic 50.0%
TCTGGGTTAAAGCGACGGAT+GGG + chr3.4:71496750-71496769 None:intergenic 50.0%
TTCTGGGTTAAAGCGACGGA+TGG + chr3.4:71496751-71496770 None:intergenic 50.0%
! CAACCGGTGATTTTTCCAGG+TGG - chr3.4:71496948-71496967 MS.gene007953:CDS 50.0%
! GGGTTTCTGGGTTAAAGCGA+CGG + chr3.4:71496755-71496774 None:intergenic 50.0%
! GTGGTGGAGGTAGGTTACAA+AGG - chr3.4:71497336-71497355 MS.gene007953:CDS 50.0%
! TCGTCTCTTTGGCCTTTCCA+TGG - chr3.4:71497380-71497399 MS.gene007953:CDS 50.0%
! TTCTGGGGAAGGATCATGTG+CGG + chr3.4:71496688-71496707 None:intergenic 50.0%
AAGAAGTTCCAGTGCGCCGT+CGG - chr3.4:71496802-71496821 MS.gene007953:CDS 55.0%
ATGGTGCAATGCAGACGGTG+CGG + chr3.4:71496575-71496594 None:intergenic 55.0%
ATTGGTCCTTGTCGTCCACC+TGG + chr3.4:71496966-71496985 None:intergenic 55.0%
CCAACACCGTCCACGTACAT+GGG - chr3.4:71496875-71496894 MS.gene007953:CDS 55.0%
CGACAAGGACCAATTCCACG+CGG - chr3.4:71496972-71496991 MS.gene007953:CDS 55.0%
CTCCGATACCTGCCATGGAA+AGG + chr3.4:71497395-71497414 None:intergenic 55.0%
GAACTCTCCGATACCTGCCA+TGG + chr3.4:71497400-71497419 None:intergenic 55.0%
GATGGGTGGGTCAAGCATGA+TGG + chr3.4:71496733-71496752 None:intergenic 55.0%
GCGCACTGGAACTTCTTGTG+TGG + chr3.4:71496799-71496818 None:intergenic 55.0%
GGCCTTTCCATGGCAGGTAT+CGG - chr3.4:71497390-71497409 MS.gene007953:CDS 55.0%
GGTGATGATCTCCTGTCCGA+CGG + chr3.4:71496821-71496840 None:intergenic 55.0%
GGTTAAAGCGACGGATGGGT+GGG + chr3.4:71496746-71496765 None:intergenic 55.0%
TCCAACACCGTCCACGTACA+TGG - chr3.4:71496874-71496893 MS.gene007953:CDS 55.0%
TGAATTGGCCAAAGCAGCGG+GGG + chr3.4:71496620-71496639 None:intergenic 55.0%
TTGATATGCCCCCGCTGCTT+TGG - chr3.4:71496609-71496628 MS.gene007953:CDS 55.0%
! AGTAAACGCGCTTCTGGGGA+AGG + chr3.4:71496699-71496718 None:intergenic 55.0%
! CTCTTTGGCCTTTCCATGGC+AGG - chr3.4:71497384-71497403 MS.gene007953:CDS 55.0%
! GAGTGTGGTGATGAAGGTGG+TGG - chr3.4:71497317-71497336 MS.gene007953:CDS 55.0%
! TGTGGTGATGAAGGTGGTGG+TGG - chr3.4:71497320-71497339 MS.gene007953:CDS 55.0%
!! ATGAAGGTGGTGGTGGAGGT+AGG - chr3.4:71497327-71497346 MS.gene007953:CDS 55.0%
CCCATGTACGTGGACGGTGT+TGG + chr3.4:71496878-71496897 None:intergenic 60.0%
GCATCAACGCCGCGTGGAAT+TGG + chr3.4:71496984-71497003 None:intergenic 60.0%
GGGTTAAAGCGACGGATGGG+TGG + chr3.4:71496747-71496766 None:intergenic 60.0%
TCTCTTGCATCAACGCCGCG+TGG + chr3.4:71496990-71497009 None:intergenic 60.0%
TGCAGACGGTGCGGTTGCAT+TGG + chr3.4:71496566-71496585 None:intergenic 60.0%
! ACGTGGACGGTGTTGGATCC+CGG + chr3.4:71496871-71496890 None:intergenic 60.0%
! ATACCTCTTTCCGGCACCGG+TGG + chr3.4:71497080-71497099 None:intergenic 60.0%
! GCGGGGGCATATCAAGTCAG+AGG + chr3.4:71496604-71496623 None:intergenic 60.0%
! GGCGTCGGGTTTGGGTTTCT+GGG + chr3.4:71496767-71496786 None:intergenic 60.0%
!! ATGACGTGGGCGTCGGGTTT+GGG + chr3.4:71496775-71496794 None:intergenic 60.0%
!! GGTGATGAAGGTGGTGGTGG+AGG - chr3.4:71497323-71497342 MS.gene007953:CDS 60.0%
GTGTGGCATGACGTGGGCGT+CGG + chr3.4:71496782-71496801 None:intergenic 65.0%
TGTGGCATGACGTGGGCGTC+GGG + chr3.4:71496781-71496800 None:intergenic 65.0%
! CGGTGTTGGATCCCGGGTTC+AGG + chr3.4:71496864-71496883 None:intergenic 65.0%
! CGTGGACGGTGTTGGATCCC+GGG + chr3.4:71496870-71496889 None:intergenic 65.0%
!! CATGACGTGGGCGTCGGGTT+TGG + chr3.4:71496776-71496795 None:intergenic 65.0%
!! GGGCGTCGGGTTTGGGTTTC+TGG + chr3.4:71496768-71496787 None:intergenic 65.0%
GTTCCAGTGCGCCGTCGGAC+AGG - chr3.4:71496807-71496826 MS.gene007953:CDS 70.0%
TCTCCTGTCCGACGGCGCAC+TGG + chr3.4:71496813-71496832 None:intergenic 70.0%
TGACCGGCAGGGTCCACCAC+CGG - chr3.4:71497061-71497080 MS.gene007953:CDS 70.0%
! CCACCACCGGTGCCGGAAAG+AGG - chr3.4:71497074-71497093 MS.gene007953:CDS 70.0%
!! CCTCTTTCCGGCACCGGTGG+TGG + chr3.4:71497077-71497096 None:intergenic 70.0%
GCAGGGTCCACCACCGGTGC+CGG - chr3.4:71497067-71497086 MS.gene007953:CDS 75.0%
!! GCACCGGTGGTGGACCCTGC+CGG + chr3.4:71497067-71497086 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 71496495 71497472 71496495 ID=MS.gene007953
chr3.4 mRNA 71496495 71497472 71496495 ID=MS.gene007953.t1;Parent=MS.gene007953
chr3.4 exon 71496495 71497472 71496495 ID=MS.gene007953.t1.exon1;Parent=MS.gene007953.t1
chr3.4 CDS 71496495 71497472 71496495 ID=cds.MS.gene007953.t1;Parent=MS.gene007953.t1
Gene Sequence

>MS.gene007953

ATGTCTTTGAGTCCTCCAAGAGAGAGAATAAACAACCAACGTAGAAACTTTCAACTCTACTATTGCTTCCAATGCAACCGCACCGTCTGCATTGCACCATATAACTCCTCTGACTTGATATGCCCCCGCTGCTTTGGCCAATTCATATGTGAAATAAACATTCCAAGACCAAGACTCGTCGTAGACTTCACCGCACATGATCCTTCCCCAGAAGCGCGTTTACTAGAAGCACTTTCCATCATGCTTGACCCACCCATCCGTCGCTTTAACCCAGAAACCCAAACCCGACGCCCACGTCATGCCACACAAGAAGTTCCAGTGCGCCGTCGGACAGGAGATCATCACCCAACCCAAACACAAACTGAACCTGAACCCGGGATCCAACACCGTCCACGTACATGGGTCATTCTACAACCTGTGGATCCTTCTTCCAATTCCGATTCAAACACGTTTCAACCGGTGATTTTTCCAGGTGGACGACAAGGACCAATTCCACGCGGCGTTGATGCAAGAGACTATTTTTTTGGACCGGGTTTTAACGAACTAATAGACCAAATAACAGAAAATGACCGGCAGGGTCCACCACCGGTGCCGGAAAGAGGTATAAACGCAATTCCAACAGTGAAAATCGAAAGCAAAAATCTGAAAGAGAATTCTCATTGTCCTGTTTGTCAAGAAGAGTTTGAAATTGGTGGTGAAGCGAGGGAGCTTCCATGTAAACATATATATCACTCTGATTGTATTGTTCCATGGCTTAGACTTCACAATTCTTGTCCAATTTGTCGTCAAGAGATTCCTTGTTCTTCTTCTGATGATGAAAATGAGTGTGGTGATGAAGGTGGTGGTGGAGGTAGGTTACAAAGGTGTTTGAGGTGGACAAGAATTTCGTCTCTTTGGCCTTTCCATGGCAGGTATCGGAGAGTTCATCCTCAAAGAGACAATGGTTCTGGTTCTGCTTCAAGAATAAGGGGTGATTGA
Protein sequence

>MS.gene007953.t1

MSLSPPRERINNQRRNFQLYYCFQCNRTVCIAPYNSSDLICPRCFGQFICEINIPRPRLVVDFTAHDPSPEARLLEALSIMLDPPIRRFNPETQTRRPRHATQEVPVRRRTGDHHPTQTQTEPEPGIQHRPRTWVILQPVDPSSNSDSNTFQPVIFPGGRQGPIPRGVDARDYFFGPGFNELIDQITENDRQGPPPVPERGINAIPTVKIESKNLKENSHCPVCQEEFEIGGEARELPCKHIYHSDCIVPWLRLHNSCPICRQEIPCSSSDDENECGDEGGGGGRLQRCLRWTRISSLWPFHGRYRRVHPQRDNGSGSASRIRGD