Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008299.t1 | XP_003600695.2 | 83.1 | 272 | 43 | 2 | 1 | 269 | 1 | 272 | 8.90E-97 | 363.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008299.t1 | A0A396IYR1 | 83.1 | 272 | 43 | 2 | 1 | 269 | 1 | 272 | 6.4e-97 | 363.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene008299 | MS.gene05127 | PPI |
| MS.gene008299 | MS.gene009653 | PPI |
| MS.gene008299 | MS.gene53889 | PPI |
| MS.gene008299 | MS.gene049594 | PPI |
| MS.gene017247 | MS.gene008299 | PPI |
| MS.gene98045 | MS.gene008299 | PPI |
| MS.gene008299 | MS.gene26246 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008299.t1 | MTR_3g065180 | 89.231 | 260 | 25 | 2 | 13 | 269 | 1 | 260 | 9.13e-155 | 436 |
| MS.gene008299.t1 | MTR_7g056407 | 68.797 | 266 | 70 | 6 | 13 | 269 | 1 | 262 | 5.74e-95 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene008299.t1 | AT3G07120 | 33.218 | 289 | 149 | 11 | 13 | 269 | 1 | 277 | 2.26e-22 | 95.9 |
| MS.gene008299.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.85e-13 | 69.3 |
| MS.gene008299.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.85e-13 | 69.3 |
| MS.gene008299.t1 | AT3G25030 | 39.496 | 119 | 58 | 7 | 3 | 116 | 7 | 116 | 1.85e-13 | 69.3 |
| MS.gene008299.t1 | AT4G13100 | 35.135 | 111 | 64 | 4 | 8 | 116 | 13 | 117 | 3.04e-12 | 65.9 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.44e-12 | 65.5 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 4 | 114 | 4.87e-12 | 65.5 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.92e-12 | 65.5 |
| MS.gene008299.t1 | AT4G13100 | 35.897 | 117 | 66 | 5 | 3 | 116 | 7 | 117 | 4.92e-12 | 65.5 |
Find 76 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTCTGCTGTTTGGATTT+TGG | 0.125473 | 3.1:-54609924 | None:intergenic |
| TAGCCGAAGCTTGTCTTTAA+AGG | 0.159939 | 3.1:-54609842 | None:intergenic |
| GAGCTCCCACGAGTGAATTT+TGG | 0.247907 | 3.1:-54610066 | None:intergenic |
| GATGTGTTCAAGGGAGCTTC+TGG | 0.299919 | 3.1:+54610575 | MS.gene008299:CDS |
| TGTGAAAAGCTTCTGCTGTT+TGG | 0.327474 | 3.1:-54609931 | None:intergenic |
| ATGTCGTTGATGGATTTGTT+AGG | 0.340148 | 3.1:+54610363 | MS.gene008299:CDS |
| TGCAGCGGAGGCTGAGGCTG+AGG | 0.380447 | 3.1:+54610320 | MS.gene008299:CDS |
| GATAATGCCCTCCCCGTCTC+TGG | 0.395714 | 3.1:-54610258 | None:intergenic |
| GGGGAGACTGATAGAGAGAT+GGG | 0.409616 | 3.1:+54610384 | MS.gene008299:CDS |
| GCTGAGGCTGAGGCTGCAAC+AGG | 0.416381 | 3.1:+54610330 | MS.gene008299:CDS |
| AGAAGCTGCAGCGGAGGCTG+AGG | 0.420492 | 3.1:+54610314 | MS.gene008299:CDS |
| TGTCGTTGATGGATTTGTTA+GGG | 0.426572 | 3.1:+54610364 | MS.gene008299:CDS |
| ACCTCCGACGATGTCGTTGA+TGG | 0.428506 | 3.1:+54610353 | MS.gene008299:CDS |
| TTTGAATATGGAAGGTCATC+GGG | 0.444490 | 3.1:+54609150 | None:intergenic |
| TGGATAGGGATGTCTGATGT+TGG | 0.451282 | 3.1:-54609904 | None:intergenic |
| AAGCCTTTAAAGACAAGCTT+CGG | 0.451547 | 3.1:+54609839 | MS.gene008299:CDS |
| TGGATCCGACGACACACTAC+TGG | 0.451753 | 3.1:-54610163 | None:intergenic |
| AGCGGCAGAAGCTGCAGCGG+AGG | 0.453049 | 3.1:+54610308 | MS.gene008299:CDS |
| AGAGCTTGGCGGTGTAGAGC+CGG | 0.453417 | 3.1:-54609269 | None:intergenic |
| CGTCTTTGATGATGTCTATG+AGG | 0.458675 | 3.1:-54609327 | None:intergenic |
| AGCAGTGGCGGCACAAGAAG+CGG | 0.461146 | 3.1:+54610290 | MS.gene008299:CDS |
| GGATGCTTGGTATCATCGTC+TGG | 0.461468 | 3.1:-54610237 | None:intergenic |
| GAAGCATAAGGGCACTGCTT+TGG | 0.462618 | 3.1:+54610527 | MS.gene008299:intron |
| CCTCCCCGTCTCTGGATGCT+TGG | 0.465184 | 3.1:-54610250 | None:intergenic |
| AGGGATGTCTGATGTTGGAA+TGG | 0.468079 | 3.1:-54609899 | None:intergenic |
| TGCTTTGGCGTTGTAGAGCT+TGG | 0.469785 | 3.1:-54609283 | None:intergenic |
| AGGGGAGACTGATAGAGAGA+TGG | 0.472745 | 3.1:+54610383 | MS.gene008299:CDS |
| TCGTCGGATCCATTCCGAAA+AGG | 0.487048 | 3.1:+54610174 | MS.gene008299:CDS |
| CGTCGGATCCATTCCGAAAA+GGG | 0.487282 | 3.1:+54610175 | MS.gene008299:CDS |
| ATTTGCATGGTGAAGCATAA+GGG | 0.490601 | 3.1:+54610516 | MS.gene008299:intron |
| TGTCTGAGTCGTGATGAGTT+TGG | 0.492254 | 3.1:-54609981 | None:intergenic |
| AAGGGAGCTTCTGGTTGCTA+AGG | 0.496586 | 3.1:+54610584 | MS.gene008299:CDS |
| GATACCAAGCATCCAGAGAC+GGG | 0.496822 | 3.1:+54610246 | MS.gene008299:CDS |
| AGAAGCGGCAGAAGCTGCAG+CGG | 0.497737 | 3.1:+54610305 | MS.gene008299:CDS |
| GAGCTTGGCGGTGTAGAGCC+GGG | 0.499580 | 3.1:-54609268 | None:intergenic |
| TGGCCTGCTAGCTGGAGCAT+GGG | 0.500180 | 3.1:-54610046 | None:intergenic |
| GACTGATAGAGAGATGGGGT+TGG | 0.500325 | 3.1:+54610389 | MS.gene008299:CDS |
| AATCCCATGCTCCAGCTAGC+AGG | 0.507491 | 3.1:+54610043 | MS.gene008299:CDS |
| GATAGAGAGATGGGGTTGGA+AGG | 0.508067 | 3.1:+54610393 | MS.gene008299:CDS |
| TAAAGCGTGCTGGCTCTGCT+TGG | 0.510415 | 3.1:+54609863 | MS.gene008299:CDS |
| AGATGGGGTTGGAAGGGTCA+AGG | 0.511672 | 3.1:+54610400 | MS.gene008299:CDS |
| GGGATGTCTGATGTTGGAAT+GGG | 0.514310 | 3.1:-54609898 | None:intergenic |
| TTGGCCTGCTAGCTGGAGCA+TGG | 0.514758 | 3.1:-54610047 | None:intergenic |
| AAGCTTCGGCTAAAGCGTGC+TGG | 0.527008 | 3.1:+54609853 | MS.gene008299:CDS |
| AGGGAGCTTCTGGTTGCTAA+GGG | 0.527571 | 3.1:+54610585 | MS.gene008299:CDS |
| ATACTAGTGGAGGAAATCTC+CGG | 0.536362 | 3.1:+54610118 | MS.gene008299:CDS |
| AGCAAGCGAGAGAAGCTAGC+GGG | 0.542475 | 3.1:+54609208 | MS.gene008299:CDS |
| ATGGATCGAGGTCATCTACT+TGG | 0.544070 | 3.1:-54610014 | None:intergenic |
| GTCTTTGATGATGTCTATGA+GGG | 0.544217 | 3.1:-54609326 | None:intergenic |
| GGAGCATGGGATTCATCTGA+TGG | 0.544263 | 3.1:-54610033 | None:intergenic |
| TCGAGACAGCTTCGACGATG+AGG | 0.576310 | 3.1:+54610212 | MS.gene008299:CDS |
| AAAACGAAATTATTACAAAG+TGG | 0.576401 | 3.1:-54610615 | None:intergenic |
| TTTGGCGTTGTAGAGCTTGG+CGG | 0.578554 | 3.1:-54609280 | None:intergenic |
| ATAGAGAGATGGGGTTGGAA+GGG | 0.584366 | 3.1:+54610394 | MS.gene008299:CDS |
| AGCAGGCCAAAATTCACTCG+TGG | 0.590104 | 3.1:+54610060 | MS.gene008299:CDS |
| GAATTCTTGCGTGATAATTG+TGG | 0.593473 | 3.1:-54610141 | None:intergenic |
| GATTCCTCTGAGAATACTAG+TGG | 0.594699 | 3.1:+54610105 | MS.gene008299:CDS |
| TCCTCTGAGAATACTAGTGG+AGG | 0.597257 | 3.1:+54610108 | MS.gene008299:CDS |
| TGATACCAAGCATCCAGAGA+CGG | 0.598650 | 3.1:+54610245 | MS.gene008299:CDS |
| GAATTCCAGTAGTGTGTCGT+CGG | 0.603076 | 3.1:+54610158 | MS.gene008299:CDS |
| TCTTGCGTGATAATTGTGGC+CGG | 0.603393 | 3.1:-54610137 | None:intergenic |
| TCCATCAACGACATCGTCGG+AGG | 0.611948 | 3.1:-54610354 | None:intergenic |
| GCAGGCCAAAATTCACTCGT+GGG | 0.618628 | 3.1:+54610061 | MS.gene008299:CDS |
| AAATCCATCAACGACATCGT+CGG | 0.618750 | 3.1:-54610357 | None:intergenic |
| GTCGTTGATGGATTTGTTAG+GGG | 0.618908 | 3.1:+54610365 | MS.gene008299:CDS |
| ATCTGCGAGAGAAGCAGTGG+CGG | 0.621972 | 3.1:+54610278 | MS.gene008299:CDS |
| ATTATCTGCGAGAGAAGCAG+TGG | 0.640834 | 3.1:+54610275 | MS.gene008299:CDS |
| TTATGAGGAAATGTCAGCTG+CGG | 0.647602 | 3.1:+54609183 | MS.gene008299:CDS |
| GGGAGACTGATAGAGAGATG+GGG | 0.649131 | 3.1:+54610385 | MS.gene008299:CDS |
| CAAGCATCCAGAGACGGGGA+GGG | 0.651075 | 3.1:+54610251 | MS.gene008299:CDS |
| TCCTCCACTAGTATTCTCAG+AGG | 0.651316 | 3.1:-54610109 | None:intergenic |
| CCAAGCATCCAGAGACGGGG+AGG | 0.656073 | 3.1:+54610250 | MS.gene008299:CDS |
| TTAGCGAATCAACAAAGACC+CGG | 0.663952 | 3.1:+54609250 | MS.gene008299:CDS |
| GGGATTCATCTGATGGATCG+AGG | 0.669034 | 3.1:-54610026 | None:intergenic |
| GAGCAAGCGAGAGAAGCTAG+CGG | 0.703074 | 3.1:+54609207 | MS.gene008299:CDS |
| ATACCAAGCATCCAGAGACG+GGG | 0.703842 | 3.1:+54610247 | MS.gene008299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAGAAAATATTCTTTTTTT+AGG | - | chr3.1:54609605-54609624 | None:intergenic | 10.0% |
| !!! | TATTGATCAATTTTATTTTA+TGG | + | chr3.1:54609729-54609748 | MS.gene008299:intron | 10.0% |
| !!! | TAAGAAAAGATTCTTTTTTT+AGG | + | chr3.1:54609516-54609535 | MS.gene008299:intron | 15.0% |
| !! | AAAACGAAATTATTACAAAG+TGG | - | chr3.1:54610618-54610637 | None:intergenic | 20.0% |
| !! | GACATATATATAAAAAGAAG+TGG | + | chr3.1:54609416-54609435 | MS.gene008299:intron | 20.0% |
| ! | AAGGTATATATTAAGTGATG+AGG | + | chr3.1:54610419-54610438 | MS.gene008299:intron | 25.0% |
| ! | AATTAGTTAGTTACTCTACA+AGG | - | chr3.1:54609476-54609495 | None:intergenic | 25.0% |
| ! | ATTAGTTAGTTACTCTACAA+GGG | - | chr3.1:54609475-54609494 | None:intergenic | 25.0% |
| !!! | TATTTTCTTACATTTGAGAC+CGG | + | chr3.1:54609615-54609634 | MS.gene008299:intron | 25.0% |
| !!! | TTTTCTGATGATGATTATGA+AGG | + | chr3.1:54610447-54610466 | MS.gene008299:intron | 25.0% |
| AACACATCCTACAAAAACTA+TGG | - | chr3.1:54610563-54610582 | None:intergenic | 30.0% | |
| TTCATTGATATGGAAGATCT+TGG | + | chr3.1:54609815-54609834 | MS.gene008299:intron | 30.0% | |
| ! | CTGCTTCATTTTCATTGATA+TGG | + | chr3.1:54609805-54609824 | MS.gene008299:intron | 30.0% |
| ! | TTTTTGTAGGATGTGTTCAA+GGG | + | chr3.1:54610566-54610585 | MS.gene008299:CDS | 30.0% |
| AAACCAACAAAAAAGATCGC+AGG | + | chr3.1:54609353-54609372 | MS.gene008299:CDS | 35.0% | |
| AACTAACTAATTACTCCCTC+TGG | + | chr3.1:54609484-54609503 | MS.gene008299:intron | 35.0% | |
| AAGGTGAAGATGATGAAGAT+GGG | + | chr3.1:54610466-54610485 | MS.gene008299:intron | 35.0% | |
| ACACACTTGTTCTATTTGCA+TGG | + | chr3.1:54610503-54610522 | MS.gene008299:intron | 35.0% | |
| ATTTGCATGGTGAAGCATAA+GGG | + | chr3.1:54610516-54610535 | MS.gene008299:intron | 35.0% | |
| GAATTCTTGCGTGATAATTG+TGG | - | chr3.1:54610144-54610163 | None:intergenic | 35.0% | |
| TATTTGCATGGTGAAGCATA+AGG | + | chr3.1:54610515-54610534 | MS.gene008299:intron | 35.0% | |
| TCATTATACAATACTCCCTC+CGG | - | chr3.1:54609637-54609656 | None:intergenic | 35.0% | |
| TTCTTACATATGAGACCAGA+GGG | - | chr3.1:54609502-54609521 | None:intergenic | 35.0% | |
| TTTCTTACATATGAGACCAG+AGG | - | chr3.1:54609503-54609522 | None:intergenic | 35.0% | |
| ! | AAGCCTTTAAAGACAAGCTT+CGG | + | chr3.1:54609839-54609858 | MS.gene008299:CDS | 35.0% |
| ! | AGCAGAAGCTTTTCACAATT+CGG | + | chr3.1:54609937-54609956 | MS.gene008299:CDS | 35.0% |
| ! | CTTGTAGCCATAGTTTTTGT+AGG | + | chr3.1:54610553-54610572 | MS.gene008299:CDS | 35.0% |
| ! | GGAAAACCACTTCTTTTTAG+AGG | - | chr3.1:54609454-54609473 | None:intergenic | 35.0% |
| ! | GTTTTTGTAGGATGTGTTCA+AGG | + | chr3.1:54610565-54610584 | MS.gene008299:CDS | 35.0% |
| ! | TCGGGAAAGAACATTTTATG+AGG | + | chr3.1:54609168-54609187 | MS.gene008299:CDS | 35.0% |
| ! | TTCCTTCCTCTAAAAAGAAG+TGG | + | chr3.1:54609445-54609464 | MS.gene008299:intron | 35.0% |
| !! | AACCACTTCTTTTTAGAGGA+AGG | - | chr3.1:54609450-54609469 | None:intergenic | 35.0% |
| !! | ATGTCGTTGATGGATTTGTT+AGG | + | chr3.1:54610363-54610382 | MS.gene008299:CDS | 35.0% |
| !! | GTCTTTGATGATGTCTATGA+GGG | - | chr3.1:54609329-54609348 | None:intergenic | 35.0% |
| !! | TGCTGTTTGGATTTTGGATA+GGG | - | chr3.1:54609921-54609940 | None:intergenic | 35.0% |
| !! | TGTCGTTGATGGATTTGTTA+GGG | + | chr3.1:54610364-54610383 | MS.gene008299:CDS | 35.0% |
| !!! | TTACCTGCGATCTTTTTTGT+TGG | - | chr3.1:54609359-54609378 | None:intergenic | 35.0% |
| AAATCCATCAACGACATCGT+CGG | - | chr3.1:54610360-54610379 | None:intergenic | 40.0% | |
| AGGTGAAGATGATGAAGATG+GGG | + | chr3.1:54610467-54610486 | MS.gene008299:intron | 40.0% | |
| ATACTAGTGGAGGAAATCTC+CGG | + | chr3.1:54610118-54610137 | MS.gene008299:CDS | 40.0% | |
| GAAGGTGAAGATGATGAAGA+TGG | + | chr3.1:54610465-54610484 | MS.gene008299:intron | 40.0% | |
| TAGCCGAAGCTTGTCTTTAA+AGG | - | chr3.1:54609845-54609864 | None:intergenic | 40.0% | |
| TGTGAAAAGCTTCTGCTGTT+TGG | - | chr3.1:54609934-54609953 | None:intergenic | 40.0% | |
| TTAGCGAATCAACAAAGACC+CGG | + | chr3.1:54609250-54609269 | MS.gene008299:CDS | 40.0% | |
| TTATGAGGAAATGTCAGCTG+CGG | + | chr3.1:54609183-54609202 | MS.gene008299:CDS | 40.0% | |
| ! | ATGAGGGTTCGACTTTTAGA+GGG | - | chr3.1:54609313-54609332 | None:intergenic | 40.0% |
| ! | GATTCCTCTGAGAATACTAG+TGG | + | chr3.1:54610105-54610124 | MS.gene008299:CDS | 40.0% |
| ! | TATGAGGGTTCGACTTTTAG+AGG | - | chr3.1:54609314-54609333 | None:intergenic | 40.0% |
| ! | TTCTTACATTTGAGACCGGA+GGG | + | chr3.1:54609619-54609638 | MS.gene008299:intron | 40.0% |
| ! | TTTCTTACATTTGAGACCGG+AGG | + | chr3.1:54609618-54609637 | MS.gene008299:intron | 40.0% |
| !! | AGCTTCTGCTGTTTGGATTT+TGG | - | chr3.1:54609927-54609946 | None:intergenic | 40.0% |
| !! | CGTCTTTGATGATGTCTATG+AGG | - | chr3.1:54609330-54609349 | None:intergenic | 40.0% |
| !! | CTGCTGTTTGGATTTTGGAT+AGG | - | chr3.1:54609922-54609941 | None:intergenic | 40.0% |
| !! | GTCGTTGATGGATTTGTTAG+GGG | + | chr3.1:54610365-54610384 | MS.gene008299:CDS | 40.0% |
| AGGGATGTCTGATGTTGGAA+TGG | - | chr3.1:54609902-54609921 | None:intergenic | 45.0% | |
| ATAGAGAGATGGGGTTGGAA+GGG | + | chr3.1:54610394-54610413 | MS.gene008299:CDS | 45.0% | |
| ATGGATCGAGGTCATCTACT+TGG | - | chr3.1:54610017-54610036 | None:intergenic | 45.0% | |
| ATTATCTGCGAGAGAAGCAG+TGG | + | chr3.1:54610275-54610294 | MS.gene008299:CDS | 45.0% | |
| GAATTCCAGTAGTGTGTCGT+CGG | + | chr3.1:54610158-54610177 | MS.gene008299:CDS | 45.0% | |
| GGGATGTCTGATGTTGGAAT+GGG | - | chr3.1:54609901-54609920 | None:intergenic | 45.0% | |
| TCCTCCACTAGTATTCTCAG+AGG | - | chr3.1:54610112-54610131 | None:intergenic | 45.0% | |
| TCTTGCGTGATAATTGTGGC+CGG | - | chr3.1:54610140-54610159 | None:intergenic | 45.0% | |
| TGATACCAAGCATCCAGAGA+CGG | + | chr3.1:54610245-54610264 | MS.gene008299:CDS | 45.0% | |
| TGGATAGGGATGTCTGATGT+TGG | - | chr3.1:54609907-54609926 | None:intergenic | 45.0% | |
| TGTCTGAGTCGTGATGAGTT+TGG | - | chr3.1:54609984-54610003 | None:intergenic | 45.0% | |
| ! | AAGTCACTACACGCCCTTTT+CGG | - | chr3.1:54610191-54610210 | None:intergenic | 45.0% |
| ! | TCCTCTGAGAATACTAGTGG+AGG | + | chr3.1:54610108-54610127 | MS.gene008299:CDS | 45.0% |
| ! | TGAAGATGGGGAAAGTGCAT+TGG | + | chr3.1:54610479-54610498 | MS.gene008299:intron | 45.0% |
| !! | CTTTTAGAGGGTGGTTGCTT+TGG | - | chr3.1:54609301-54609320 | None:intergenic | 45.0% |
| AGCAGGCCAAAATTCACTCG+TGG | + | chr3.1:54610060-54610079 | MS.gene008299:CDS | 50.0% | |
| AGGGGAGACTGATAGAGAGA+TGG | + | chr3.1:54610383-54610402 | MS.gene008299:CDS | 50.0% | |
| ATACCAAGCATCCAGAGACG+GGG | + | chr3.1:54610247-54610266 | MS.gene008299:CDS | 50.0% | |
| CGTCGGATCCATTCCGAAAA+GGG | + | chr3.1:54610175-54610194 | MS.gene008299:CDS | 50.0% | |
| GACTGATAGAGAGATGGGGT+TGG | + | chr3.1:54610389-54610408 | MS.gene008299:CDS | 50.0% | |
| GATACCAAGCATCCAGAGAC+GGG | + | chr3.1:54610246-54610265 | MS.gene008299:CDS | 50.0% | |
| GATAGAGAGATGGGGTTGGA+AGG | + | chr3.1:54610393-54610412 | MS.gene008299:CDS | 50.0% | |
| GATGTGTTCAAGGGAGCTTC+TGG | + | chr3.1:54610575-54610594 | MS.gene008299:CDS | 50.0% | |
| GCAGGCCAAAATTCACTCGT+GGG | + | chr3.1:54610061-54610080 | MS.gene008299:CDS | 50.0% | |
| GGAGCATGGGATTCATCTGA+TGG | - | chr3.1:54610036-54610055 | None:intergenic | 50.0% | |
| GGATGCTTGGTATCATCGTC+TGG | - | chr3.1:54610240-54610259 | None:intergenic | 50.0% | |
| GGGAGACTGATAGAGAGATG+GGG | + | chr3.1:54610385-54610404 | MS.gene008299:CDS | 50.0% | |
| GGGGAGACTGATAGAGAGAT+GGG | + | chr3.1:54610384-54610403 | MS.gene008299:CDS | 50.0% | |
| TCGTCGGATCCATTCCGAAA+AGG | + | chr3.1:54610174-54610193 | MS.gene008299:CDS | 50.0% | |
| TGCTTTGGCGTTGTAGAGCT+TGG | - | chr3.1:54609286-54609305 | None:intergenic | 50.0% | |
| TTTGGCGTTGTAGAGCTTGG+CGG | - | chr3.1:54609283-54609302 | None:intergenic | 50.0% | |
| ! | AAGGGAGCTTCTGGTTGCTA+AGG | + | chr3.1:54610584-54610603 | MS.gene008299:CDS | 50.0% |
| ! | ACTACACGCCCTTTTCGGAA+TGG | - | chr3.1:54610186-54610205 | None:intergenic | 50.0% |
| ! | AGGGAGCTTCTGGTTGCTAA+GGG | + | chr3.1:54610585-54610604 | MS.gene008299:CDS | 50.0% |
| ! | GAGCTCCCACGAGTGAATTT+TGG | - | chr3.1:54610069-54610088 | None:intergenic | 50.0% |
| ! | GGGATTCATCTGATGGATCG+AGG | - | chr3.1:54610029-54610048 | None:intergenic | 50.0% |
| !! | AGGGTTCGACTTTTAGAGGG+TGG | - | chr3.1:54609310-54609329 | None:intergenic | 50.0% |
| !! | GAAGCATAAGGGCACTGCTT+TGG | + | chr3.1:54610527-54610546 | MS.gene008299:intron | 50.0% |
| !! | GTGAATTTTGGCCTGCTAGC+TGG | - | chr3.1:54610057-54610076 | None:intergenic | 50.0% |
| AAGCTTCGGCTAAAGCGTGC+TGG | + | chr3.1:54609853-54609872 | MS.gene008299:CDS | 55.0% | |
| AATCCCATGCTCCAGCTAGC+AGG | + | chr3.1:54610043-54610062 | MS.gene008299:CDS | 55.0% | |
| ACCTCCGACGATGTCGTTGA+TGG | + | chr3.1:54610353-54610372 | MS.gene008299:CDS | 55.0% | |
| AGATGGGGTTGGAAGGGTCA+AGG | + | chr3.1:54610400-54610419 | MS.gene008299:CDS | 55.0% | |
| AGCAAGCGAGAGAAGCTAGC+GGG | + | chr3.1:54609208-54609227 | MS.gene008299:CDS | 55.0% | |
| ATCTGCGAGAGAAGCAGTGG+CGG | + | chr3.1:54610278-54610297 | MS.gene008299:CDS | 55.0% | |
| GAGCAAGCGAGAGAAGCTAG+CGG | + | chr3.1:54609207-54609226 | MS.gene008299:CDS | 55.0% | |
| TCCATCAACGACATCGTCGG+AGG | - | chr3.1:54610357-54610376 | None:intergenic | 55.0% | |
| TCGAGACAGCTTCGACGATG+AGG | + | chr3.1:54610212-54610231 | MS.gene008299:CDS | 55.0% | |
| TGGATCCGACGACACACTAC+TGG | - | chr3.1:54610166-54610185 | None:intergenic | 55.0% | |
| !! | TAAAGCGTGCTGGCTCTGCT+TGG | + | chr3.1:54609863-54609882 | MS.gene008299:CDS | 55.0% |
| AGAAGCGGCAGAAGCTGCAG+CGG | + | chr3.1:54610305-54610324 | MS.gene008299:CDS | 60.0% | |
| AGAGCTTGGCGGTGTAGAGC+CGG | - | chr3.1:54609272-54609291 | None:intergenic | 60.0% | |
| AGCAGTGGCGGCACAAGAAG+CGG | + | chr3.1:54610290-54610309 | MS.gene008299:CDS | 60.0% | |
| CAAGCATCCAGAGACGGGGA+GGG | + | chr3.1:54610251-54610270 | MS.gene008299:CDS | 60.0% | |
| GATAATGCCCTCCCCGTCTC+TGG | - | chr3.1:54610261-54610280 | None:intergenic | 60.0% | |
| TGGCCTGCTAGCTGGAGCAT+GGG | - | chr3.1:54610049-54610068 | None:intergenic | 60.0% | |
| TTGGCCTGCTAGCTGGAGCA+TGG | - | chr3.1:54610050-54610069 | None:intergenic | 60.0% | |
| AGAAGCTGCAGCGGAGGCTG+AGG | + | chr3.1:54610314-54610333 | MS.gene008299:CDS | 65.0% | |
| CCAAGCATCCAGAGACGGGG+AGG | + | chr3.1:54610250-54610269 | MS.gene008299:CDS | 65.0% | |
| CCTCCCCGTCTCTGGATGCT+TGG | - | chr3.1:54610253-54610272 | None:intergenic | 65.0% | |
| GAGCTTGGCGGTGTAGAGCC+GGG | - | chr3.1:54609271-54609290 | None:intergenic | 65.0% | |
| GCTGAGGCTGAGGCTGCAAC+AGG | + | chr3.1:54610330-54610349 | MS.gene008299:CDS | 65.0% | |
| AGCGGCAGAAGCTGCAGCGG+AGG | + | chr3.1:54610308-54610327 | MS.gene008299:CDS | 70.0% | |
| TGCAGCGGAGGCTGAGGCTG+AGG | + | chr3.1:54610320-54610339 | MS.gene008299:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 54609157 | 54610639 | 54609157 | ID=MS.gene008299 |
| chr3.1 | mRNA | 54609157 | 54610639 | 54609157 | ID=MS.gene008299.t1;Parent=MS.gene008299 |
| chr3.1 | exon | 54609157 | 54609374 | 54609157 | ID=MS.gene008299.t1.exon1;Parent=MS.gene008299.t1 |
| chr3.1 | CDS | 54609157 | 54609374 | 54609157 | ID=cds.MS.gene008299.t1;Parent=MS.gene008299.t1 |
| chr3.1 | exon | 54609831 | 54610421 | 54609831 | ID=MS.gene008299.t1.exon2;Parent=MS.gene008299.t1 |
| chr3.1 | CDS | 54609831 | 54610421 | 54609831 | ID=cds.MS.gene008299.t1;Parent=MS.gene008299.t1 |
| chr3.1 | exon | 54610531 | 54610639 | 54610531 | ID=MS.gene008299.t1.exon3;Parent=MS.gene008299.t1 |
| chr3.1 | CDS | 54610531 | 54610639 | 54610531 | ID=cds.MS.gene008299.t1;Parent=MS.gene008299.t1 |
| Gene Sequence |
| Protein sequence |
