AlfalfaGEDB | MS.gene049594

M. sativa cultivar XinJiangDaYe / MS.gene049594

KEGG: K06689
GO: -
PFAM: PF00179.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049594.t1	XP_019461676.1	100	148	0	0	1	148	50	197	1.50E-81	312

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049594.t1	P35135	98.0	148	3	0	1	148	1	148	1.2e-82	307.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049594.t1	B7FMV8	100.0	148	0	0	1	148	1	148	1.1e-81	312.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049594	MS.gene07738	0.805037	1.62E-49	-1.69E-46
MS.gene049594	MS.gene37722	0.826799	2.22E-54	-1.69E-46
MS.gene049594	MS.gene43083	0.800381	1.48E-48	-1.69E-46
MS.gene049594	MS.gene77445	0.816347	5.79E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003553	MS.gene049594	PPI
MS.gene008299	MS.gene049594	PPI
MS.gene009653	MS.gene049594	PPI
MS.gene013177	MS.gene049594	PPI
MS.gene014659	MS.gene049594	PPI
MS.gene017247	MS.gene049594	PPI
MS.gene023529	MS.gene049594	PPI
MS.gene029877	MS.gene049594	PPI
MS.gene031698	MS.gene049594	PPI
MS.gene033148	MS.gene049594	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049594.t1	MTR_3g062450	100.000	148	0	0	1	148	1	148	6.68e-110	308
MS.gene049594.t1	MTR_5g075580	98.649	148	2	0	1	148	1	148	1.46e-108	305
MS.gene049594.t1	MTR_7g116940	97.297	148	4	0	1	148	1	148	2.68e-107	302
MS.gene049594.t1	MTR_8g071040	93.919	148	9	0	1	148	1	148	2.75e-104	294
MS.gene049594.t1	MTR_7g116940	92.903	155	4	1	1	148	1	155	3.58e-104	294
MS.gene049594.t1	MTR_1g021150	91.892	148	12	0	1	148	1	148	5.88e-103	291
MS.gene049594.t1	MTR_4g073240	91.892	148	12	0	1	148	1	148	6.35e-103	291
MS.gene049594.t1	MTR_1g021150	92.063	126	10	0	23	148	31	156	2.47e-87	252
MS.gene049594.t1	MTR_5g075580	98.319	119	2	0	30	148	1	119	2.73e-86	248
MS.gene049594.t1	MTR_4g073240	92.437	119	9	0	30	148	1	119	6.54e-82	237

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049594.t1	AT5G41700	96.622	148	5	1	148	1	148	2.35e-107	302
MS.gene049594.t1	AT5G41700	96.622	148	5	1	148	1	148	2.35e-107	302
MS.gene049594.t1	AT5G41700	96.622	148	5	1	148	1	148	2.35e-107	302
MS.gene049594.t1	AT1G64230	95.946	148	6	1	148	1	148	2.65e-107	302
MS.gene049594.t1	AT1G64230	95.946	148	6	1	148	1	148	2.65e-107	302
MS.gene049594.t1	AT5G53300	95.946	148	6	1	148	1	148	8.04e-107	301
MS.gene049594.t1	AT5G53300	95.946	148	6	1	148	1	148	8.04e-107	301
MS.gene049594.t1	AT5G53300	95.946	148	6	1	148	1	148	8.04e-107	301
MS.gene049594.t1	AT4G27960	95.270	148	7	1	148	1	148	1.66e-106	300
MS.gene049594.t1	AT4G27960	95.270	148	7	1	148	31	178	5.57e-106	300

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Find 48 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACACCACCAGCATAG+GGG	0.699264	3.2:+58657579	None:intergenic
AATACCTTTGGTGGCTTGAA+AGG	0.424308	3.2:+58657527	None:intergenic
ACAAGCGGGTCATCGGGATT+GGG	0.433760	3.2:+58655480	None:intergenic
ACCTTGGAAATGGTCAGTGC+AGG	0.479512	3.2:+58656160	None:intergenic
ACGGATCCTCAAGGAGCTCA+AGG	0.606874	3.2:-58658061	MS.gene049594:CDS
AGGAGGAATTGGTCATCCCA+TGG	0.622867	3.2:+58655380	None:intergenic
ATGAAGCAACCGCACGCAGC+TGG	0.472596	3.2:-58655416	MS.gene049594:CDS
ATTTGAGCATGGCATCGAAA+CGG	0.533369	3.2:-58658080	None:intergenic
CAATACTGCAGGTTGCATTT+AGG	0.246319	3.2:-58656255	MS.gene049594:intron
CACAAGCGGGTCATCGGGAT+TGG	0.353907	3.2:+58655479	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATAATATGGTCCCTGT+CGG	+	chr3.2:58656234-58656253	None:intergenic	30.0%
AACATAAAACTATCTTCAGG+TGG	+	chr3.2:58657041-58657060	None:intergenic	30.0%
ACTATTATCAAGTCCTTACT+TGG	+	chr3.2:58656526-58656545	None:intergenic	30.0%
AGATCAGTGGAAAACAAAAA+AGG	+	chr3.2:58656824-58656843	None:intergenic	30.0%
ATGTTATGGTTTATGAAGCT+AGG	-	chr3.2:58655732-58655751	MS.gene049594:intron	30.0%
CAACAACTAAAATCAAACCT+TGG	+	chr3.2:58657323-58657342	None:intergenic	30.0%
CACCTAAAATAGTGAATGTT+AGG	+	chr3.2:58657934-58657953	None:intergenic	30.0%
CCTAACATAAAACTATCTTC+AGG	+	chr3.2:58657044-58657063	None:intergenic	30.0%
CTAAAATCAAACCTTGGAAA+TGG	+	chr3.2:58657317-58657336	None:intergenic	30.0%
CTTGAGATAATTAAAGAGCA+AGG	+	chr3.2:58656600-58656619	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	58655392	58658094	58655392	ID=MS.gene049594
chr3.2	mRNA	58655392	58658094	58655392	ID=MS.gene049594.t1;Parent=MS.gene049594
chr3.2	exon	58658025	58658094	58658025	ID=MS.gene049594.t1.exon1;Parent=MS.gene049594.t1
chr3.2	CDS	58658025	58658094	58658025	ID=cds.MS.gene049594.t1;Parent=MS.gene049594.t1
chr3.2	exon	58657532	58657659	58657532	ID=MS.gene049594.t1.exon2;Parent=MS.gene049594.t1
chr3.2	CDS	58657532	58657659	58657532	ID=cds.MS.gene049594.t1;Parent=MS.gene049594.t1
chr3.2	exon	58656162	58656266	58656162	ID=MS.gene049594.t1.exon3;Parent=MS.gene049594.t1
chr3.2	CDS	58656162	58656266	58656162	ID=cds.MS.gene049594.t1;Parent=MS.gene049594.t1
chr3.2	exon	58655392	58655535	58655392	ID=MS.gene049594.t1.exon4;Parent=MS.gene049594.t1
chr3.2	CDS	58655392	58655535	58655392	ID=cds.MS.gene049594.t1;Parent=MS.gene049594.t1

Gene Sequence

>MS.gene049594

ATGGCATCGAAACGGATCCTCAAGGAGCTCAAGGATTTGCAGAAGGATCCACCAACATCATGCAGTGCAGGTGAAACAAAACAAACAAACAAACAAACCCTTTTTTTCTTTTATCATATAGAATATATTCAACCCTTAAAGTTTTGATTTTTAGCTTTTTTATTTTGATGCATAATAATAAAATTTTAATGATTTATTTTTAAAATTATGGATACCCTTTTGTTGTTTTATGATTTTTATCAATGATTTGTTATGGATCTGTTATTTGAAGGGTTTTTGAGGTGATTTGGATTTAGAATTATAGACATGAAACTTTAGGAATTCAAATTATTTGTTAGATATGTTATGGTTTATGAAGCTAGGTTTTTTGATGTTTTTATTTTAATAATAATTTTTTGTTGTTGTTGTTGATGATGATGATGTTTTGTATTTTAGGTCCTGTGGCTGAGGACATGTTTCATTGGCAAGCAACAATCATGGGACCTGCTGATAGCCCCTATGCTGGTGGTGTGTTTTTGGTTTCAATTCATTTTCCTCCGGATTATCCTTTCAAGCCACCAAAGGTATTGAAAGTTGAAACCCTAGCTTGTATGTATGATCTGTGCTTTTATGTTAATAATTTGTTGAGATTTGTTTGGTTTTTGTTCAAATTGCTTCTAAACAGAAGCAGATCTTTTGAAAGTTTTATTCTTTTTGGCGCGTGCTTGTGTGTGTGTATAATATATTGTAGCATGTATGTTTTTCTATAAATTGCAAGTTATAGCGCGAATATCAAATCTATCTAGCCGCGCAGTGGCGGGGTCTGTTTTGAGGGGTGAATGTTTGGCAGGCAGTCGATCCCGACAGGGACCATATTATTTTTTCTGTTTTCAATTAGTGTATTATTTTTAAAAAATCGCTATGAGGAGGTTCTAACCATGGACGCGAGGTAAACCGATGCGCTTTAATACCACGACGCCAAGATGCAAAGCTTTCATTGCACATTAAATGCTAATTATTATATTTGGTCCCGTCAAAATTATCGATCAAGCTCCGCCTTCAGGAAAAGGTTGCTTCTCTTGTACTGCTTGTGCTTGAAACTGTTTTTTATATTGATCATTTTCCATAAAATCGATCCTCTGCAAGGCCTTACCAAGTAAGGACTTGATAATAGTTTTGCGCTTGTTTCCTACAATCTCTTATTTATACTACCCATTCGTCCATCCCCTTGCTCTTTAATTATCTCAAGCAAACAAGCTAGTGGGGTTACCTAGCATAAACCTGCCTCAAGAAGCCTCAGGTTATTTGTGTTGCAACTTGCAAGGTCAACCTTACCTCAATGCCGAAGTGGCCGAGAGCCTGAGTGTATTGCAAACTGTTGCTTACTAGCCCTGTGTTAATTGAAAAAAAAAATGATCATTGGTTGGCTGTTTTGTTCTGTTTATGTCTTCCTTTTTTGTTTTCCACTGATCTTTTTGTCCCAGTTTCGCTTGCATGCATGCATGTGTTCATCCACACGTTCACAATTGTCGTCTGATACAACTTCTTTTTAATAATTTAAAAAAAATATCATCTTGATTACATTTTGTTTCTTGATTTCAAAGACATGTATAAAACATATTCTCAAACCAATGAAATCCGTGGATGTTGTTAATATTGACATCAATCCACCTGAAGATAGTTTTATGTTAGGAAGATTTTCTTTTTCTTGCTGATGAGGTGATTTATTAAATTTATGCAGCCAAGTTCAGTATATTTGTCCGGTTTAATTGAGTTTGCAAACATCTTGTACTTTGGATCTTGTTTAATATTCGAGAAATGACAGAGTTATTGTCTTGCAATACTGCAGGTTGCATTTAGGACTAAGGTATTCCACCCAAACATCAACAGCAATGGAAGTATTTGTCTCGACATTCTTAAGGAACAATGGAGCCCTGCACTGACCATTTCCAAGGTTTGATTTTAGTTGTTGTTACTTGATAATTAATGATTTATATAAGGTTTTAGAGTGACAAGCTTTGTTAATTGTTTGGAAAATGGAGCATACACTTTAATCAATGAATCAGGTTTATTTTCACATGTTAAATTTGTCTATGCATGTATTTTGTACTCTTAGAATTTCTATTGATACAAATTACACTTGTCTCTTGACGTCTTTCACATGTTTGATGTACTACTTTTGTTGATGTCATTCTTGTGGGAAGGCTCAGTAGTATTCATCAATTTGAAAGTCTAGCCCAAGAAAAAGATTCATGATTTGTTTACACTACAGTTTTTAAAAGCATCGAAGAACTGTGATTTTTTTTGGAAGATCAGTTCATAAGATAAAAATTCAGATTAGTAATATTTCAAGTCTAAAAGTAGTTGAATATAGATATATACTCTCTCTTGACCTGAGATATAGTTTGTGTGTGTCACTTTGATAAGTTGATCATATGATTGTTAGGAATTTAATTTGAAGTATTGAATGTATTATCTTTCTCCGTGTTTAATGACCTGCATTTGGAATGTTGTTGTTCTTATGTGTCATGGTGTTGTTCTAAATCTCGCAAAAAATAATCCTAACATTCACTATTTTAGGTGCTTTTGTCAATCTGCTCATTGTTGACGGATCCCAATCCCGATGACCCGCTTGTGCCTGAAATTGCACATATGTACAAGACTGACAGGACCAAGTATGAAGCAACCGCACGCAGCTGGACACAGAAGTATGCCATGGGATGA

Protein sequence

>MS.gene049594.t1

MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRTKYEATARSWTQKYAMG