Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009042.t1 | AET03213.1 | 82 | 333 | 45 | 1 | 1 | 333 | 1 | 318 | 8.30E-157 | 563.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009042.t1 | P52839 | 52.9 | 327 | 147 | 3 | 8 | 333 | 4 | 324 | 3.4e-98 | 359.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009042.t1 | G7LG99 | 82.0 | 333 | 45 | 1 | 1 | 333 | 1 | 318 | 6.0e-157 | 563.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene009042 | MS.gene55382 | PPI |
MS.gene009042 | MS.gene99693 | PPI |
MS.gene009042 | MS.gene53169 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009042.t1 | MTR_8g066210 | 81.982 | 333 | 45 | 1 | 1 | 333 | 1 | 318 | 0.0 | 562 |
MS.gene009042.t1 | MTR_3g435130 | 78.144 | 334 | 72 | 1 | 1 | 333 | 1 | 334 | 0.0 | 549 |
MS.gene009042.t1 | MTR_8g066220 | 76.877 | 333 | 77 | 0 | 1 | 333 | 1 | 333 | 0.0 | 538 |
MS.gene009042.t1 | MTR_0071s0010 | 71.212 | 330 | 94 | 1 | 5 | 333 | 4 | 333 | 4.73e-180 | 501 |
MS.gene009042.t1 | MTR_3g046670 | 71.212 | 330 | 94 | 1 | 5 | 333 | 4 | 333 | 4.73e-180 | 501 |
MS.gene009042.t1 | MTR_7g007710 | 50.932 | 322 | 153 | 3 | 16 | 333 | 12 | 332 | 8.00e-123 | 356 |
MS.gene009042.t1 | MTR_3g013500 | 50.629 | 318 | 157 | 0 | 16 | 333 | 20 | 337 | 6.30e-119 | 347 |
MS.gene009042.t1 | MTR_7g007680 | 47.761 | 335 | 167 | 4 | 2 | 333 | 4 | 333 | 2.35e-115 | 339 |
MS.gene009042.t1 | MTR_8g040820 | 47.188 | 320 | 165 | 3 | 18 | 333 | 25 | 344 | 3.33e-114 | 335 |
MS.gene009042.t1 | MTR_8g066280 | 80.851 | 188 | 36 | 0 | 146 | 333 | 22 | 209 | 1.26e-110 | 320 |
MS.gene009042.t1 | MTR_8g035720 | 45.897 | 329 | 173 | 3 | 10 | 333 | 78 | 406 | 2.41e-109 | 325 |
MS.gene009042.t1 | MTR_8g040430 | 45.238 | 336 | 169 | 4 | 3 | 333 | 20 | 345 | 4.08e-108 | 319 |
MS.gene009042.t1 | MTR_8g040490 | 45.483 | 321 | 172 | 2 | 16 | 333 | 23 | 343 | 5.71e-107 | 318 |
MS.gene009042.t1 | MTR_8g041790 | 45.858 | 338 | 157 | 7 | 4 | 333 | 6 | 325 | 7.26e-102 | 303 |
MS.gene009042.t1 | MTR_8g040520 | 48.101 | 316 | 157 | 4 | 16 | 327 | 23 | 335 | 1.56e-99 | 297 |
MS.gene009042.t1 | MTR_3g434790 | 74.457 | 184 | 47 | 0 | 150 | 333 | 51 | 234 | 1.61e-99 | 293 |
MS.gene009042.t1 | MTR_3g434790 | 66.667 | 57 | 18 | 1 | 1 | 56 | 1 | 57 | 7.75e-16 | 76.3 |
MS.gene009042.t1 | MTR_8g040250 | 44.586 | 314 | 135 | 7 | 24 | 333 | 15 | 293 | 4.51e-90 | 271 |
MS.gene009042.t1 | MTR_8g014380 | 43.624 | 298 | 128 | 5 | 16 | 311 | 22 | 281 | 1.96e-83 | 254 |
MS.gene009042.t1 | MTR_8g040820 | 49.315 | 219 | 107 | 3 | 119 | 333 | 27 | 245 | 3.56e-79 | 242 |
MS.gene009042.t1 | MTR_8g040430 | 48.402 | 219 | 109 | 2 | 119 | 333 | 27 | 245 | 8.51e-75 | 231 |
MS.gene009042.t1 | MTR_8g040710 | 48.993 | 149 | 74 | 1 | 177 | 323 | 134 | 282 | 1.16e-46 | 159 |
MS.gene009042.t1 | MTR_8g040730 | 49.474 | 190 | 88 | 5 | 78 | 262 | 39 | 225 | 1.20e-46 | 166 |
MS.gene009042.t1 | MTR_8g040730 | 48.408 | 157 | 76 | 3 | 22 | 176 | 343 | 496 | 4.41e-40 | 148 |
MS.gene009042.t1 | MTR_8g066190 | 70.642 | 109 | 14 | 1 | 225 | 333 | 2 | 92 | 5.97e-45 | 149 |
MS.gene009042.t1 | MTR_8g040315 | 48.413 | 126 | 64 | 1 | 208 | 333 | 8 | 132 | 4.98e-32 | 117 |
MS.gene009042.t1 | MTR_8g066200 | 59.649 | 57 | 23 | 0 | 130 | 186 | 4 | 60 | 5.29e-16 | 72.0 |
MS.gene009042.t1 | MTR_8g040410 | 35.955 | 89 | 39 | 1 | 217 | 305 | 75 | 145 | 1.94e-14 | 70.1 |
MS.gene009042.t1 | MTR_8g040410 | 48.333 | 60 | 29 | 1 | 66 | 123 | 21 | 80 | 5.28e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene009042.t1 | AT3G45070 | 53.125 | 320 | 148 | 2 | 15 | 333 | 5 | 323 | 3.72e-121 | 352 |
MS.gene009042.t1 | AT3G45070 | 53.125 | 320 | 148 | 2 | 15 | 333 | 10 | 328 | 4.36e-121 | 352 |
MS.gene009042.t1 | AT3G45070 | 53.125 | 320 | 148 | 2 | 15 | 333 | 37 | 355 | 4.78e-121 | 352 |
MS.gene009042.t1 | AT5G07010 | 49.231 | 325 | 162 | 2 | 11 | 333 | 33 | 356 | 2.34e-117 | 343 |
MS.gene009042.t1 | AT2G03760 | 51.682 | 327 | 151 | 3 | 8 | 333 | 4 | 324 | 1.85e-116 | 340 |
MS.gene009042.t1 | AT2G03770 | 48.182 | 330 | 163 | 1 | 4 | 333 | 1 | 322 | 1.26e-114 | 335 |
MS.gene009042.t1 | AT3G45080 | 50.769 | 325 | 157 | 3 | 11 | 333 | 6 | 329 | 1.31e-112 | 330 |
MS.gene009042.t1 | AT5G07000 | 49.068 | 322 | 159 | 3 | 16 | 333 | 24 | 344 | 2.29e-112 | 330 |
MS.gene009042.t1 | AT1G13420 | 51.780 | 309 | 142 | 4 | 25 | 331 | 26 | 329 | 1.38e-106 | 315 |
MS.gene009042.t1 | AT5G43690 | 49.074 | 324 | 155 | 5 | 16 | 333 | 12 | 331 | 2.31e-105 | 311 |
MS.gene009042.t1 | AT2G03750 | 46.809 | 329 | 173 | 2 | 5 | 333 | 24 | 350 | 5.25e-104 | 309 |
MS.gene009042.t1 | AT4G26280 | 48.580 | 317 | 143 | 2 | 15 | 329 | 7 | 305 | 3.47e-100 | 298 |
MS.gene009042.t1 | AT2G14920 | 46.815 | 314 | 160 | 3 | 25 | 333 | 22 | 333 | 1.10e-97 | 292 |
MS.gene009042.t1 | AT1G28170 | 48.923 | 325 | 160 | 5 | 11 | 333 | 6 | 326 | 5.38e-96 | 288 |
MS.gene009042.t1 | AT1G74100 | 41.543 | 337 | 184 | 5 | 2 | 331 | 3 | 333 | 3.18e-93 | 281 |
MS.gene009042.t1 | AT1G18590 | 44.268 | 314 | 162 | 6 | 25 | 331 | 34 | 341 | 8.36e-91 | 275 |
MS.gene009042.t1 | AT1G13430 | 44.817 | 328 | 160 | 4 | 25 | 333 | 26 | 351 | 6.55e-88 | 268 |
MS.gene009042.t1 | AT2G27570 | 42.006 | 319 | 130 | 3 | 15 | 333 | 10 | 273 | 3.78e-84 | 256 |
MS.gene009042.t1 | AT1G74090 | 45.079 | 315 | 158 | 8 | 25 | 331 | 38 | 345 | 2.12e-82 | 254 |
Find 68 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCCATCTATATCAAGGATTT+TGG | 0.102319 | 8.2:+36353616 | MS.gene009042:CDS |
TCATGCTCTTGTTCCCTTCT+TGG | 0.120006 | 8.2:+36353827 | MS.gene009042:CDS |
GTTGACTCTTTCACAGATTT+TGG | 0.152840 | 8.2:-36353945 | None:intergenic |
TGTAGAGGAGTGAGTGTTTA+TGG | 0.153934 | 8.2:+36354092 | MS.gene009042:CDS |
GGATGGTTGTTATGAATATT+TGG | 0.171994 | 8.2:-36353786 | None:intergenic |
GTATCAACTCCTTGCATTCT+TGG | 0.226566 | 8.2:-36353554 | None:intergenic |
AAGCCAAGTGGTACCTGATT+TGG | 0.229554 | 8.2:-36353724 | None:intergenic |
CACCATCGTCGAAACTAAAT+TGG | 0.277160 | 8.2:+36354448 | MS.gene009042:CDS |
CAAAATCTTTGTCATTATAA+AGG | 0.292354 | 8.2:-36353857 | None:intergenic |
TCCAAAATCCTTGATATAGA+TGG | 0.314386 | 8.2:-36353617 | None:intergenic |
TGAGTGTTTATGGACCATTT+TGG | 0.320903 | 8.2:+36354102 | MS.gene009042:CDS |
GGGAGCATGTATTGGGATAT+TGG | 0.323106 | 8.2:+36354123 | MS.gene009042:CDS |
AGCCAAGTGGTACCTGATTT+GGG | 0.335808 | 8.2:-36353723 | None:intergenic |
CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8.2:-36354065 | None:intergenic |
CTAAGATGATATCTGAATCT+AGG | 0.344853 | 8.2:-36353692 | None:intergenic |
TTTATAAACATCACCTTCTC+TGG | 0.349912 | 8.2:-36354164 | None:intergenic |
AGTGAAACAAACATGTCTTT+AGG | 0.355827 | 8.2:-36353996 | None:intergenic |
GTCGTGGCCAAGTCGGAGAT+TGG | 0.377310 | 8.2:+36354387 | MS.gene009042:CDS |
GATTCTTCTTCTTCAGAGAA+TGG | 0.385323 | 8.2:-36354251 | None:intergenic |
CCCAATACATGCTCCCAAAA+TGG | 0.387620 | 8.2:-36354116 | None:intergenic |
TCTTGTGGTCAAATACTTGC+AGG | 0.400656 | 8.2:+36353518 | MS.gene009042:CDS |
GGGATATTGGAAGGAAAGCT+TGG | 0.409993 | 8.2:+36354136 | MS.gene009042:CDS |
TTAGTTACCGCTCCCAAATC+AGG | 0.417298 | 8.2:+36353711 | MS.gene009042:CDS |
AAGACATGTTTGTTTCACTT+TGG | 0.453802 | 8.2:+36354000 | MS.gene009042:CDS |
AGCCACGTCCATCTATATCA+AGG | 0.459829 | 8.2:+36353609 | MS.gene009042:CDS |
TAAGATGATATCTGAATCTA+GGG | 0.463673 | 8.2:-36353691 | None:intergenic |
TGTGTGGAGAAGAGTCTTGG+AGG | 0.474226 | 8.2:-36353903 | None:intergenic |
AATACCAGATGATACTCTTC+CGG | 0.480182 | 8.2:-36354345 | None:intergenic |
TATATCATCAACCATGCCAT+TGG | 0.484546 | 8.2:-36354273 | None:intergenic |
ATATGTGTGGAGAAGAGTCT+TGG | 0.497605 | 8.2:-36353906 | None:intergenic |
CAATCATTTCTGTTGTGAGA+AGG | 0.505255 | 8.2:-36354415 | None:intergenic |
TGAGAAGTTGAGCAACTTGG+AGG | 0.511813 | 8.2:+36354313 | MS.gene009042:CDS |
AACTTGGAGGTCAACAAGAC+CGG | 0.513880 | 8.2:+36354326 | MS.gene009042:CDS |
GGAGATAATGAGTTGAGGTC+AGG | 0.514105 | 8.2:-36353882 | None:intergenic |
GGATATTGGAAGGAAAGCTT+GGG | 0.524825 | 8.2:+36354137 | MS.gene009042:CDS |
GAATATTTGGATACTTGTTG+CGG | 0.533903 | 8.2:-36353773 | None:intergenic |
ATAAAGGTCAATCTCCAAGA+AGG | 0.540311 | 8.2:-36353841 | None:intergenic |
CTCCCAAATCAGGTACCACT+TGG | 0.546400 | 8.2:+36353721 | MS.gene009042:CDS |
GGGAACAAGAGCATGAGGGT+TGG | 0.547139 | 8.2:-36353820 | None:intergenic |
AAAGCCTCTTCTAATGGAAG+TGG | 0.551607 | 8.2:-36354059 | None:intergenic |
GACAAGATAAAACACCTTGG+AGG | 0.552847 | 8.2:-36353653 | None:intergenic |
GAAACTAAATTGGCTAAACA+TGG | 0.562951 | 8.2:+36354458 | MS.gene009042:CDS |
AAGACCGGAAGAGTATCATC+TGG | 0.573264 | 8.2:+36354341 | MS.gene009042:CDS |
GCATGTATTGGGATATTGGA+AGG | 0.583242 | 8.2:+36354127 | MS.gene009042:CDS |
TAAAGGTCAATCTCCAAGAA+GGG | 0.583924 | 8.2:-36353840 | None:intergenic |
AAGCTTGGGAAGGCCAGAGA+AGG | 0.587696 | 8.2:+36354151 | MS.gene009042:CDS |
TGTGAAAGAGTCAACTTGCA+AGG | 0.588731 | 8.2:+36353953 | MS.gene009042:CDS |
TGACTTAGGCCAAGAATGCA+AGG | 0.599341 | 8.2:+36353545 | MS.gene009042:CDS |
GGTTGGAAGTGAGCAAAGGA+TGG | 0.599932 | 8.2:-36353803 | None:intergenic |
AGGACCACTTCCATTAGAAG+AGG | 0.602220 | 8.2:+36354055 | MS.gene009042:CDS |
AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8.2:-36353825 | None:intergenic |
ACTTTGGCATTTCTCAAACA+AGG | 0.607779 | 8.2:+36354016 | MS.gene009042:CDS |
AGCCAATTTAGTTTCGACGA+TGG | 0.614591 | 8.2:-36354450 | None:intergenic |
AAGGTAAGAGCACAGAGTAG+AGG | 0.625492 | 8.2:+36354035 | MS.gene009042:CDS |
AAACTAAATTGGCTAAACAT+GGG | 0.626001 | 8.2:+36354459 | MS.gene009042:CDS |
CGTCAATGCTTTAAGCCAAG+TGG | 0.629717 | 8.2:-36353736 | None:intergenic |
AGAAGAAGAATCCAATGGCA+TGG | 0.632992 | 8.2:+36354262 | MS.gene009042:CDS |
AGTGGTACCTGATTTGGGAG+CGG | 0.637866 | 8.2:-36353718 | None:intergenic |
ATCCTTGATATAGATGGACG+TGG | 0.638873 | 8.2:-36353611 | None:intergenic |
AACCAAAGAAAACTCTCTTG+TGG | 0.640132 | 8.2:+36353503 | MS.gene009042:CDS |
CAAAACACAAGGAATATGTG+TGG | 0.645075 | 8.2:-36353919 | None:intergenic |
TCTGAAGAAGAAGAATCCAA+TGG | 0.648299 | 8.2:+36354257 | MS.gene009042:CDS |
TCTGACAAGATAAAACACCT+TGG | 0.650724 | 8.2:-36353656 | None:intergenic |
TGAGGGTTGGAAGTGAGCAA+AGG | 0.653409 | 8.2:-36353807 | None:intergenic |
TTGGAGGAGATAATGAGTTG+AGG | 0.662757 | 8.2:-36353887 | None:intergenic |
TACTTGCAGGACGATGACTT+AGG | 0.663478 | 8.2:+36353531 | MS.gene009042:CDS |
ATTGGAAGGAAAGCTTGGGA+AGG | 0.673326 | 8.2:+36354141 | MS.gene009042:CDS |
AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8.2:-36353824 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTTTCAAATAAAAACT+AGG | - | chr8.2:36354212-36354231 | None:intergenic | 10.0% |
!! | CAAAATCTTTGTCATTATAA+AGG | - | chr8.2:36353860-36353879 | None:intergenic | 20.0% |
!!! | AAAAAAATTGCTGAGTTTTT+GGG | + | chr8.2:36354224-36354243 | MS.gene009042:CDS | 20.0% |
! | AAACTAAATTGGCTAAACAT+GGG | + | chr8.2:36354459-36354478 | MS.gene009042:CDS | 25.0% |
! | TAAGATGATATCTGAATCTA+GGG | - | chr8.2:36353694-36353713 | None:intergenic | 25.0% |
!! | AAAATCAAGGATTTTTCTGA+TGG | - | chr8.2:36353588-36353607 | None:intergenic | 25.0% |
!! | GAAAAAAATTGCTGAGTTTT+TGG | + | chr8.2:36354223-36354242 | MS.gene009042:CDS | 25.0% |
AAGACATGTTTGTTTCACTT+TGG | + | chr8.2:36354000-36354019 | MS.gene009042:CDS | 30.0% | |
AGTGAAACAAACATGTCTTT+AGG | - | chr8.2:36353999-36354018 | None:intergenic | 30.0% | |
CTAAGATGATATCTGAATCT+AGG | - | chr8.2:36353695-36353714 | None:intergenic | 30.0% | |
GAAACTAAATTGGCTAAACA+TGG | + | chr8.2:36354458-36354477 | MS.gene009042:CDS | 30.0% | |
GGATGGTTGTTATGAATATT+TGG | - | chr8.2:36353789-36353808 | None:intergenic | 30.0% | |
TCCAAAATCCTTGATATAGA+TGG | - | chr8.2:36353620-36353639 | None:intergenic | 30.0% | |
TTTATAAACATCACCTTCTC+TGG | - | chr8.2:36354167-36354186 | None:intergenic | 30.0% | |
! | GAATATTTGGATACTTGTTG+CGG | - | chr8.2:36353776-36353795 | None:intergenic | 30.0% |
! | TCCATCTATATCAAGGATTT+TGG | + | chr8.2:36353616-36353635 | MS.gene009042:CDS | 30.0% |
!!! | AATAAAGCTTTTTTTCGTCG+TGG | + | chr8.2:36354371-36354390 | MS.gene009042:CDS | 30.0% |
AACCAAAGAAAACTCTCTTG+TGG | + | chr8.2:36353503-36353522 | MS.gene009042:CDS | 35.0% | |
AATACCAGATGATACTCTTC+CGG | - | chr8.2:36354348-36354367 | None:intergenic | 35.0% | |
ACTTTGGCATTTCTCAAACA+AGG | + | chr8.2:36354016-36354035 | MS.gene009042:CDS | 35.0% | |
ATAAAGGTCAATCTCCAAGA+AGG | - | chr8.2:36353844-36353863 | None:intergenic | 35.0% | |
CAAAACACAAGGAATATGTG+TGG | - | chr8.2:36353922-36353941 | None:intergenic | 35.0% | |
CAATCATTTCTGTTGTGAGA+AGG | - | chr8.2:36354418-36354437 | None:intergenic | 35.0% | |
GATTCTTCTTCTTCAGAGAA+TGG | - | chr8.2:36354254-36354273 | None:intergenic | 35.0% | |
TAAAGGTCAATCTCCAAGAA+GGG | - | chr8.2:36353843-36353862 | None:intergenic | 35.0% | |
TATATCATCAACCATGCCAT+TGG | - | chr8.2:36354276-36354295 | None:intergenic | 35.0% | |
TCTGAAGAAGAAGAATCCAA+TGG | + | chr8.2:36354257-36354276 | MS.gene009042:CDS | 35.0% | |
TCTGACAAGATAAAACACCT+TGG | - | chr8.2:36353659-36353678 | None:intergenic | 35.0% | |
! | GAGTGTTTATGGACCATTTT+GGG | + | chr8.2:36354103-36354122 | MS.gene009042:CDS | 35.0% |
! | TGAGTGTTTATGGACCATTT+TGG | + | chr8.2:36354102-36354121 | MS.gene009042:CDS | 35.0% |
!! | GATTTTGGCAACAAAACACA+AGG | - | chr8.2:36353933-36353952 | None:intergenic | 35.0% |
!! | GCTTTTGAGAGTTTTTGTAG+AGG | + | chr8.2:36354077-36354096 | MS.gene009042:CDS | 35.0% |
!! | GTTGACTCTTTCACAGATTT+TGG | - | chr8.2:36353948-36353967 | None:intergenic | 35.0% |
!! | TTTTGAGAAGTTGAGCAACT+TGG | + | chr8.2:36354310-36354329 | MS.gene009042:CDS | 35.0% |
AAAGCCTCTTCTAATGGAAG+TGG | - | chr8.2:36354062-36354081 | None:intergenic | 40.0% | |
AGAAGAAGAATCCAATGGCA+TGG | + | chr8.2:36354262-36354281 | MS.gene009042:CDS | 40.0% | |
ATATGTGTGGAGAAGAGTCT+TGG | - | chr8.2:36353909-36353928 | None:intergenic | 40.0% | |
ATCCTTGATATAGATGGACG+TGG | - | chr8.2:36353614-36353633 | None:intergenic | 40.0% | |
ATGGACGTGGCTAAAAATCA+AGG | - | chr8.2:36353601-36353620 | None:intergenic | 40.0% | |
CACCATCGTCGAAACTAAAT+TGG | + | chr8.2:36354448-36354467 | MS.gene009042:CDS | 40.0% | |
CTCTCAAAAGCCTCTTCTAA+TGG | - | chr8.2:36354068-36354087 | None:intergenic | 40.0% | |
GACAAGATAAAACACCTTGG+AGG | - | chr8.2:36353656-36353675 | None:intergenic | 40.0% | |
GCATGTATTGGGATATTGGA+AGG | + | chr8.2:36354127-36354146 | MS.gene009042:CDS | 40.0% | |
GGATATTGGAAGGAAAGCTT+GGG | + | chr8.2:36354137-36354156 | MS.gene009042:CDS | 40.0% | |
GTATCAACTCCTTGCATTCT+TGG | - | chr8.2:36353557-36353576 | None:intergenic | 40.0% | |
TCTTGTGGTCAAATACTTGC+AGG | + | chr8.2:36353518-36353537 | MS.gene009042:CDS | 40.0% | |
TGTAGAGGAGTGAGTGTTTA+TGG | + | chr8.2:36354092-36354111 | MS.gene009042:CDS | 40.0% | |
TGTGAAAGAGTCAACTTGCA+AGG | + | chr8.2:36353953-36353972 | MS.gene009042:CDS | 40.0% | |
TTGGAGGAGATAATGAGTTG+AGG | - | chr8.2:36353890-36353909 | None:intergenic | 40.0% | |
! | AACACCTTGGAGGATTTTTG+CGG | - | chr8.2:36353646-36353665 | None:intergenic | 40.0% |
! | AGCCAATTTAGTTTCGACGA+TGG | - | chr8.2:36354453-36354472 | None:intergenic | 40.0% |
! | CAAGGATTTTTCTGATGGCA+AGG | - | chr8.2:36353583-36353602 | None:intergenic | 40.0% |
! | GACCACAAGAGAGTTTTCTT+TGG | - | chr8.2:36353508-36353527 | None:intergenic | 40.0% |
! | GATTTTTCTGATGGCAAGGT+GGG | - | chr8.2:36353579-36353598 | None:intergenic | 40.0% |
!! | ACCATTTTGGGAGCATGTAT+TGG | + | chr8.2:36354115-36354134 | MS.gene009042:CDS | 40.0% |
!! | CCATTTTGGGAGCATGTATT+GGG | + | chr8.2:36354116-36354135 | MS.gene009042:CDS | 40.0% |
AACTTGGAGGTCAACAAGAC+CGG | + | chr8.2:36354326-36354345 | MS.gene009042:CDS | 45.0% | |
AAGCCAAGTGGTACCTGATT+TGG | - | chr8.2:36353727-36353746 | None:intergenic | 45.0% | |
AGCCAAGTGGTACCTGATTT+GGG | - | chr8.2:36353726-36353745 | None:intergenic | 45.0% | |
AGCCACGTCCATCTATATCA+AGG | + | chr8.2:36353609-36353628 | MS.gene009042:CDS | 45.0% | |
AGGACCACTTCCATTAGAAG+AGG | + | chr8.2:36354055-36354074 | MS.gene009042:CDS | 45.0% | |
ATTGCCGCAAAAATCCTCCA+AGG | + | chr8.2:36353639-36353658 | MS.gene009042:CDS | 45.0% | |
ATTGGAAGGAAAGCTTGGGA+AGG | + | chr8.2:36354141-36354160 | MS.gene009042:CDS | 45.0% | |
CCCAATACATGCTCCCAAAA+TGG | - | chr8.2:36354119-36354138 | None:intergenic | 45.0% | |
GGGATATTGGAAGGAAAGCT+TGG | + | chr8.2:36354136-36354155 | MS.gene009042:CDS | 45.0% | |
TACTTGCAGGACGATGACTT+AGG | + | chr8.2:36353531-36353550 | MS.gene009042:CDS | 45.0% | |
TCATGCTCTTGTTCCCTTCT+TGG | + | chr8.2:36353827-36353846 | MS.gene009042:CDS | 45.0% | |
TGACTTAGGCCAAGAATGCA+AGG | + | chr8.2:36353545-36353564 | MS.gene009042:CDS | 45.0% | |
TGAGAAGTTGAGCAACTTGG+AGG | + | chr8.2:36354313-36354332 | MS.gene009042:CDS | 45.0% | |
TTAGTTACCGCTCCCAAATC+AGG | + | chr8.2:36353711-36353730 | MS.gene009042:CDS | 45.0% | |
! | AAGAAGGGAACAAGAGCATG+AGG | - | chr8.2:36353828-36353847 | None:intergenic | 45.0% |
! | AAGGTAAGAGCACAGAGTAG+AGG | + | chr8.2:36354035-36354054 | MS.gene009042:CDS | 45.0% |
! | AGAAGGGAACAAGAGCATGA+GGG | - | chr8.2:36353827-36353846 | None:intergenic | 45.0% |
! | CGTCAATGCTTTAAGCCAAG+TGG | - | chr8.2:36353739-36353758 | None:intergenic | 45.0% |
! | GGAGATAATGAGTTGAGGTC+AGG | - | chr8.2:36353885-36353904 | None:intergenic | 45.0% |
! | GGATTTTTCTGATGGCAAGG+TGG | - | chr8.2:36353580-36353599 | None:intergenic | 45.0% |
! | GGGAGCATGTATTGGGATAT+TGG | + | chr8.2:36354123-36354142 | MS.gene009042:CDS | 45.0% |
! | GGTTTTTCCAATCTCCGACT+TGG | - | chr8.2:36354397-36354416 | None:intergenic | 45.0% |
!! | AAGACCGGAAGAGTATCATC+TGG | + | chr8.2:36354341-36354360 | MS.gene009042:CDS | 45.0% |
!!! | TTTTTTCGTCGTGGCCAAGT+CGG | + | chr8.2:36354380-36354399 | MS.gene009042:CDS | 45.0% |
CTCCCAAATCAGGTACCACT+TGG | + | chr8.2:36353721-36353740 | MS.gene009042:CDS | 50.0% | |
GGTTGGAAGTGAGCAAAGGA+TGG | - | chr8.2:36353806-36353825 | None:intergenic | 50.0% | |
TGAGGGTTGGAAGTGAGCAA+AGG | - | chr8.2:36353810-36353829 | None:intergenic | 50.0% | |
TGTGTGGAGAAGAGTCTTGG+AGG | - | chr8.2:36353906-36353925 | None:intergenic | 50.0% | |
!! | AGTGGTACCTGATTTGGGAG+CGG | - | chr8.2:36353721-36353740 | None:intergenic | 50.0% |
AAGCTTGGGAAGGCCAGAGA+AGG | + | chr8.2:36354151-36354170 | MS.gene009042:CDS | 55.0% | |
! | GGGAACAAGAGCATGAGGGT+TGG | - | chr8.2:36353823-36353842 | None:intergenic | 55.0% |
GTCGTGGCCAAGTCGGAGAT+TGG | + | chr8.2:36354387-36354406 | MS.gene009042:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 36353492 | 36354493 | 36353492 | ID=MS.gene009042 |
chr8.2 | mRNA | 36353492 | 36354493 | 36353492 | ID=MS.gene009042.t1;Parent=MS.gene009042 |
chr8.2 | exon | 36353492 | 36354493 | 36353492 | ID=MS.gene009042.t1.exon1;Parent=MS.gene009042.t1 |
chr8.2 | CDS | 36353492 | 36354493 | 36353492 | ID=cds.MS.gene009042.t1;Parent=MS.gene009042.t1 |
Gene Sequence |
Protein sequence |