AlfalfaGEDB | MS.gene55382

M. sativa cultivar XinJiangDaYe / MS.gene55382

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00560.36 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55382.t1	XP_003614019.1	99.7	329	1	0	1	329	1	329	1.20E-62	250.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55382.t1	G7JXX6	99.7	329	1	0	1	329	1	329	8.5e-63	250.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene009040	MS.gene55382	PPI
MS.gene009042	MS.gene55382	PPI
MS.gene013571	MS.gene55382	PPI
MS.gene01864	MS.gene55382	PPI
MS.gene018865	MS.gene55382	PPI
MS.gene018902	MS.gene55382	PPI
MS.gene020921	MS.gene55382	PPI
MS.gene020922	MS.gene55382	PPI
MS.gene020923	MS.gene55382	PPI
MS.gene023270	MS.gene55382	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55382.t1	MTR_5g043800	99.696	329	1	0	1	329	1	329	0.0	667
MS.gene55382.t1	MTR_1g038890	36.431	269	162	3	64	327	210	474	2.01e-42	157
MS.gene55382.t1	MTR_1g038890	29.589	365	201	9	9	324	15	372	1.68e-35	137
MS.gene55382.t1	MTR_1g038890	31.852	270	163	2	65	313	283	552	3.85e-31	124
MS.gene55382.t1	MTR_1g038890	40.314	191	109	2	100	289	558	744	4.99e-30	120
MS.gene55382.t1	MTR_1g038890	31.418	261	150	3	70	305	432	688	2.26e-28	116
MS.gene55382.t1	MTR_1g038890	33.636	220	125	2	89	287	499	718	2.58e-23	101
MS.gene55382.t1	MTR_1g038890	27.863	262	168	2	65	305	355	616	1.30e-22	99.4
MS.gene55382.t1	MTR_1g038890	36.765	136	86	0	77	212	607	742	4.53e-13	70.5
MS.gene55382.t1	MTR_2g016590	36.042	283	153	4	64	323	72	349	2.95e-42	150

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55382.t1	AT5G61240	83.333	324	53	1	7	329	3	326	0.0	558
MS.gene55382.t1	AT5G61240	82.407	324	44	1	19	329	16	339	0.0	550
MS.gene55382.t1	AT1G13910	72.086	326	87	1	8	329	5	330	5.10e-175	488
MS.gene55382.t1	AT1G13910	72.000	300	80	1	8	303	5	304	2.99e-160	451
MS.gene55382.t1	AT1G35710	40.625	224	130	1	65	288	139	359	1.14e-41	155
MS.gene55382.t1	AT1G35710	36.842	266	139	2	65	305	235	496	2.52e-41	154
MS.gene55382.t1	AT1G35710	35.789	285	144	5	37	288	33	311	8.89e-41	152
MS.gene55382.t1	AT1G35710	35.294	272	151	3	65	311	187	458	1.95e-36	139
MS.gene55382.t1	AT1G35710	34.615	208	132	2	101	308	535	738	2.26e-25	107
MS.gene55382.t1	AT1G35710	31.855	248	152	2	65	305	331	568	4.75e-25	106

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Find 80 sgRNAs with CRISPR-Local

Find 288 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCAATTGGATTGACACC+AGG	0.624478	5.2:+33872270	None:intergenic
AAAGGGTTCAGGAATTCTCC+CGG	0.586931	5.2:+33872425	None:intergenic
AACAAGCTTGTAACAGCAGT+AGG	0.597162	5.2:+33875815	None:intergenic
AACACGATAATCACCGACAG+TGG	0.639159	5.2:+33876003	None:intergenic
AAGAGCGAGAATGAAGATGA+AGG	0.533795	5.2:+33876285	None:intergenic
AAGGTTGCTTTCCATCACTA+CGG	0.575470	5.2:-33873498	MS.gene55382:CDS
AATACGAATGAGTTCCCTTA+TGG	0.347362	5.2:+33873522	None:intergenic
AATGAGATCAAAGCTTCACT+TGG	0.532644	5.2:-33876106	MS.gene55382:CDS
AATTTGTAGTGAGGTGTATG+CGG	0.635757	5.2:-33875858	MS.gene55382:intron
ACATCGAGGGAAACGCATTC+CGG	0.445027	5.2:-33872293	MS.gene55382:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAGTTACCAAGAAGGTTA+AGG	+	chr5.2:33874656-33874675	None:intergenic	30.0%
AACAAACAAACAGCATGTTA+TGG	+	chr5.2:33875347-33875366	None:intergenic	30.0%
AAGATATGATATCCTTATGC+AGG	-	chr5.2:33874722-33874741	MS.gene55382:intron	30.0%
AAGCGTCTTAAAATACTGTA+CGG	-	chr5.2:33874318-33874337	MS.gene55382:intron	30.0%
AAGTAGAAGATTGTGCTAAT+AGG	+	chr5.2:33874904-33874923	None:intergenic	30.0%
AATTTCCCACTGACAAATAA+TGG	-	chr5.2:33875863-33875882	MS.gene55382:intron	30.0%
ACAAACAAACAGCATGTTAT+GGG	+	chr5.2:33875346-33875365	None:intergenic	30.0%
ACAACCATTAGTATCAAGTA+TGG	+	chr5.2:33873084-33873103	None:intergenic	30.0%
ACAAGAAATGCATAAACATC+AGG	+	chr5.2:33875671-33875690	None:intergenic	30.0%
ATAAAATGCAAAAATCGGGA+AGG	+	chr5.2:33874694-33874713	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.2	gene	33872227	33876335	33872227	ID=MS.gene55382
chr5.2	mRNA	33872227	33876335	33872227	ID=MS.gene55382.t1;Parent=MS.gene55382
chr5.2	exon	33876242	33876335	33876242	ID=MS.gene55382.t1.exon1;Parent=MS.gene55382.t1
chr5.2	CDS	33876242	33876335	33876242	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33875992	33876139	33875992	ID=MS.gene55382.t1.exon2;Parent=MS.gene55382.t1
chr5.2	CDS	33875992	33876139	33875992	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33875800	33875871	33875800	ID=MS.gene55382.t1.exon3;Parent=MS.gene55382.t1
chr5.2	CDS	33875800	33875871	33875800	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33874228	33874299	33874228	ID=MS.gene55382.t1.exon4;Parent=MS.gene55382.t1
chr5.2	CDS	33874228	33874299	33874228	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33873918	33873989	33873918	ID=MS.gene55382.t1.exon5;Parent=MS.gene55382.t1
chr5.2	CDS	33873918	33873989	33873918	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33873675	33873818	33873675	ID=MS.gene55382.t1.exon6;Parent=MS.gene55382.t1
chr5.2	CDS	33873675	33873818	33873675	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33873493	33873573	33873493	ID=MS.gene55382.t1.exon7;Parent=MS.gene55382.t1
chr5.2	CDS	33873493	33873573	33873493	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33873314	33873385	33873314	ID=MS.gene55382.t1.exon8;Parent=MS.gene55382.t1
chr5.2	CDS	33873314	33873385	33873314	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33873116	33873187	33873116	ID=MS.gene55382.t1.exon9;Parent=MS.gene55382.t1
chr5.2	CDS	33873116	33873187	33873116	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33872399	33872470	33872399	ID=MS.gene55382.t1.exon10;Parent=MS.gene55382.t1
chr5.2	CDS	33872399	33872470	33872399	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1
chr5.2	exon	33872227	33872317	33872227	ID=MS.gene55382.t1.exon11;Parent=MS.gene55382.t1
chr5.2	CDS	33872227	33872317	33872227	ID=cds.MS.gene55382.t1;Parent=MS.gene55382.t1

Gene Sequence

>MS.gene55382

ATGTTGCGAATACCCTTTACTTCACTTTCCTTCATCTTCATTCTCGCTCTTTCAATTCTCAACTTTGCACACTGCAAGACACTTAAACGTGACGGTAAAGAAACAATACCCTTTTTCAATCTTTCTCTGATTCCGTTAATTGGATTTTTTTTTTGATTTGATGGTTCGAAATCGTTGATGGGTTTTTGATTTGCAGTCAAGGCTTTGAATGAGATCAAAGCTTCACTTGGTTGGAGAGTAGTGTATGCTTGGGTTGGTGATGATCCTTGCGGTGATGGTGATCTTCCTCCTTGGTCTGGTGTTACTTGTTCCACTGTCGGTGATTATCGTGTTGTAACTGAACTGTAAGTATTGGTTTTTTTTTTATTTTAGAAAGTTTTTATGTTTAAGTGTAATTGTTATAGATTAGATTTGTGGTGTGATATTGGTGTAATTTGGAATTGATTTTTTTGTTAAATTTGTAGTGAGGTGTATGCGGTTTCGATTGTTGGACCTTTTCCTACTGCTGTTACAAGCTTGTTGGATCTTACACGCCTGTGAGTTACTTACTTAATTTGTGTTGGCTTATCTTTTGATCCTTGTAATTGCTTGAAGATTACACATTGTTGCTTGATACGGAAGTTTTAATTCGCAATTCTGGTTGCATCGCGATCCTTTATATTATGAAGAATTGCGGTAAAAGACGACTGATTTAGCCTCAATCACGTCCGCTTTTGAGATCATGTAGACATAAAAAACCATGCTGACATGTCACCGTTTTAAAGGGATAAACTTATGTGTAGTTCTTATATGTAGTGGACAACATAAACACAACACATATAGAGCAATATTTACGAAGATTTTTATTTTCAAAACCATACTTGATACTAATGGTTGTGTTGGCGTTGGATGGCAATTGGGGAAAGGGTTTGTGTGTGTATGTTTCTCATGTAGTTTTGCTAAATTATAGGGTTTTAATTGGTTTGGTTATAGTACCTTATTGGTGGTGAAAAGTTGGGTTCCTAGTGTACTAGGGTATATTTGAAGAGTTTTGTGGTGGACTGTGAATTTAGTGGTATAATGTATGATTGAAATTTAACAACTTTTGACAGAGCCGACAAATTATATTGCAATGACTATTATGTTTATTGAATGAAAATTATACTTGCAGTCATCCAAAGAGGATAATTAGAGAAGGGATAGTTTGTTACGGGAGGATAGAGAGAGCGAGTTGAGTTTGTTATATAGAGACTGAAGGATAAGGAAAAGGTATCTTTTGGGAAAACCATTTGGTTAGGTATGGACAGAGAATGTTCCCTGTAGGAGCTTTGCCCTATGGGCATTAGGATATTCATTCTTTTGCAGTTATCTTACACTTTGAGAAATAATACACCGTACTTCCAGTTTTGTGCATTTCAATCCCTTTTTCTATATTCAGTTAGTTGCGGCGATCCTGGCACGCAACAAGGATGCTCTTGCAGCAGAAAAAAATGAAAATAGACCAGAGCCAAGCCAAAGGTCCTACTCCAGGGAATAATCTCCTAACCAGAGAGAAACCTCGCATAGACCAACTTTAACAATATTTCCTAATACCCCTTCCCCACTCTCTACTTACAATATATTCTCATCCTCTACGAATCTAGCTCCACGTCACTAACTAACTAACTTCCATTCCCTCCCCCATGGCCCACTTGCATCTAGAATATACCTAGGTGTTCTATCAACTTTGTTTACTCTTATGACTTTTCATGTGCATACCCAAATTTGAAAGATTTAACGTAGAGATCAATATAGCATTTGTGCATGGGTAGAAGATATGTGTTAGCTAAAATGACTAAATAATGTATCCAAGAAGGTGAATAACTGTGATTTGTTTTTGCATTGTATTGCCAATTATAAGTTATAAATGGAACATTCAGGGACACATGTTATGACGACACACTGCTTGCTTACTGCTTGTCTACCTTTGATCTTGTTTTTTTTTTACATTCAAAGACTTCAAGTTTGCCGCTTTCTTCCAAGCTCTTAGTAATTGAAGTATTGTCCACTTTTGGCAGGGATCTCCATAATAACAAATTGACAGGGCCTATTCCTCCTCAAATTGGTCGGTTGAAGCGTCTTAAAATACTGTACGGATTTTCTACTCCCTCTTAGATTCTGATTTCTTTGTATATGGTTCAGATACTCAATTTTGATGTGATAATTGTGATGCTGTACAATGCCATTGGCAAGATTTTTATGCTAATAACAGTTGTTGATTTTTGAAGATTATGCTTTTTCCACTACTTCTATGTTAACTGTCATTAATCGCTTGGCTCTACTATTTGAATTATGCAGTTCATTATTTTACCTGTTGTTTCCTTGCAGAAATTTGAGGTGGAACAAACTGCAGGATGCAATTCCTCCAGAAATTGGGGAGCTTAAAAGTTTGACGCATCTGTATGTAGCCTTAACCTTCTTGGTAACTTTTGGCTTGTTAGTCTTTCCTTCCCGATTTTTGCATTTTATTAACAATTAAGATATGATATCCTTATGCAGGTACTTAAGCTTCAACAGTTTCAAGGGTGAAATCCCCAGGGAGCTAGCAGATCTACCTGACCTACGTTACCTTTATCTTCATGAAAACCGTTTGACCGGAAGAATACCACCAGAATTGGGCACTCTACAAAACCTTCGGCACTTGTAATTTTCAAATCCTATTAGCACAATCTTCTACTTCAGAGAATATTTATATCTCATTCTCATACCAATTATGTCTCATTATTTTACTGTCATGTTTATAGGGATGCTGGTAACAATCATTTAGTTGGTACCATAAGGGAACTCATTCGTATTGAAGGTTGCTTTCCATCACTACGGAATTTGTAAGTTCTTGTTTGTCAATTATTTATCTTGAGAAGTTTCCATTTGGTCTTAAATATCTACATTGCAGTTTTCTCTCAACATTAACATATTTTGTTCTGCTAACCAGATATCTAAACAATAATTATTTTACTGGAGGAATACCTGCACAACTTGCTAACTTATCCAGTCTTGAAATCTTGTGAGTATTTCTCCTTTACCGCGTCTTAATGTGTGTTTCAATGGTGCTGTTAAACATAATTTTACTGTGTCAAGATCTATCGAGCTGGAAAACTCCCATAACATGCTGTTTGTTTGTTGGAGACAGGTATCTGTCCTACAACAAAATGTCAGGAGTCATACCATCTAGCGTTGCTCATATTCCTAAATTGACATACTTGTAAGTTTGCAGTTCAACATTACTATTATGTATTTGATAGTTCGCTGGACTAGTTATGAAGCATATATTTAGGGTAGAATATAAAATAGTTGGTTTGATCATTGAAATATGTATATAAAAAACATTGTTCGTCAAATAGGAACTCTTGATTAATTTTTTCATTGGAGTAAATTTGGTATTTTGCTAGAATACACTTGTTTTGAATTATTTTACATTTGCTTCCTGATGTTTATGCATTTCTTGTATGTTTACTTAAAAATATCTTGGTAACAGATATATTTTAAAATTTGTATTATTTCTGAAAACTCGATGCAATTTTTTGGTTCCTCTTTTTTGTCAAAACTTGTAAACTTTCAGGCATTCAATCCTCTAATGCAATATATGAACTAGAAACTCATGCTTAACTACCTGTTATCAATTTCCCACTGACAAATAATGGTCTTAATTTGATGTTATAAGCTTCAATGCCTGATTATTTGAGCTAAATTTTTTTATTCATAATCATGTGAAAAACGGAGATGGAAATTTGCCATGATTTCTTTGCTTTCTGCCAGATAGACCAACATATATTAATACCTGCAAGAAATGTGTTTGGCATCTTAGTGAAGCATTCTCAATATAAAACATTTCTAATATTTATTTCAGGTACTTGGATCACAATCAATTTTCCGGGAGAATTCCTGAACCCTTTTACAAGCATCCATTTTTGAAAGAAATGTGAGTCTCCTACCATCGAGTAAATCAACCATTTATCTTGTGTTCGTTGAACTGAATAATCATATCATATGGTCTTGGCAGGTACATCGAGGGAAACGCATTCCGGCCTGGTGTCAATCCAATTGGTTTGCACAAAGTGCTTGAAGTTTCTGATTCAGAATTCCTTGTTTAA

Protein sequence

>MS.gene55382.t1

MLRIPFTSLSFIFILALSILNFAHCKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDLPPWSGVTCSTVGDYRVVTELEVYAVSIVGPFPTAVTSLLDLTRLDLHNNKLTGPIPPQIGRLKRLKILNLRWNKLQDAIPPEIGELKSLTHLYLSFNSFKGEIPRELADLPDLRYLYLHENRLTGRIPPELGTLQNLRHLDAGNNHLVGTIRELIRIEGCFPSLRNLYLNNNYFTGGIPAQLANLSSLEILYLSYNKMSGVIPSSVAHIPKLTYLYLDHNQFSGRIPEPFYKHPFLKEMYIEGNAFRPGVNPIGLHKVLEVSDSEFLV