AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009541

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009541.t1 MTR_5g076830 97.509 843 21 0 1 843 1 843 0.0 1722
MS.gene009541.t1 MTR_3g064610 81.731 832 147 2 1 827 1 832 0.0 1442
MS.gene009541.t1 MTR_6g478000 64.792 818 216 3 13 828 15 762 0.0 1095
MS.gene009541.t1 MTR_6g478030 75.439 627 154 0 130 756 894 1520 0.0 994
MS.gene009541.t1 MTR_7g108930 56.040 803 349 2 9 811 9 807 0.0 958
MS.gene009541.t1 MTR_1g088170 56.804 801 345 1 1 801 1 800 0.0 952
MS.gene009541.t1 MTR_2g044070 54.771 807 359 4 6 811 3 804 0.0 937
MS.gene009541.t1 MTR_4g124660 55.031 805 356 4 4 807 3 802 0.0 932
MS.gene009541.t1 MTR_4g124660 56.516 752 321 4 4 754 3 749 0.0 887
MS.gene009541.t1 MTR_6g478020 73.000 200 52 1 636 833 1 200 1.01e-96 329
MS.gene009541.t1 MTR_0277s0020 60.417 192 42 2 644 833 1159 1318 1.28e-65 239
MS.gene009541.t1 MTR_0419s0050 54.088 159 13 2 580 738 1 99 2.90e-45 157
MS.gene009541.t1 MTR_4g115620 26.248 541 321 20 283 777 168 676 5.24e-36 147
MS.gene009541.t1 MTR_5g091340 25.869 518 318 18 283 758 171 664 6.57e-35 144
MS.gene009541.t1 MTR_3g047380 25.581 516 319 18 283 758 167 657 8.93e-33 137
MS.gene009541.t1 MTR_0277s0030 72.059 68 19 0 580 647 1 68 8.78e-25 103
MS.gene009541.t1 MTR_0277s0030 48.148 81 40 1 755 833 65 145 1.28e-19 89.0
MS.gene009541.t1 MTR_0419s0010 47.115 104 20 1 699 802 2 70 4.55e-24 96.7
MS.gene009541.t1 MTR_4g021160 52.239 67 31 1 7 72 10 76 5.36e-17 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009541.t1 AT1G73370 72.084 806 225 0 7 812 9 814 0.0 1259
MS.gene009541.t1 AT1G73370 72.084 806 225 0 7 812 9 814 0.0 1259
MS.gene009541.t1 AT5G37180 70.933 836 238 2 10 843 5 837 0.0 1246
MS.gene009541.t1 AT1G73370 72.857 770 209 0 43 812 1 770 0.0 1207
MS.gene009541.t1 AT5G37180 75.193 649 159 1 197 843 1 649 0.0 1034
MS.gene009541.t1 AT4G02280 56.646 805 348 1 7 811 6 809 0.0 976
MS.gene009541.t1 AT5G37180 75.635 591 142 1 255 843 1 591 0.0 946
MS.gene009541.t1 AT5G49190 54.635 809 354 3 9 811 5 806 0.0 939
MS.gene009541.t1 AT5G49190 55.725 786 335 3 32 811 18 796 0.0 932
MS.gene009541.t1 AT5G20830 55.638 807 350 5 7 811 8 808 0.0 928
MS.gene009541.t1 AT5G20830 55.638 807 350 5 7 811 8 808 0.0 928
MS.gene009541.t1 AT5G20830 55.638 807 350 5 7 811 8 808 0.0 928
MS.gene009541.t1 AT5G49190 57.781 739 311 1 73 811 3 740 0.0 919
MS.gene009541.t1 AT3G43190 54.950 808 356 5 6 811 7 808 0.0 916
MS.gene009541.t1 AT3G43190 54.950 808 356 5 6 811 7 808 0.0 916
MS.gene009541.t1 AT5G11110 26.729 535 328 21 283 781 177 683 1.92e-35 145
MS.gene009541.t1 AT4G10120 25.391 512 319 17 283 758 23 507 4.63e-34 140
MS.gene009541.t1 AT5G20280 25.185 540 339 20 283 783 170 683 9.07e-34 140
MS.gene009541.t1 AT4G10120 25.631 515 314 18 283 758 197 681 9.71e-34 140
MS.gene009541.t1 AT4G10120 25.631 515 314 18 283 758 197 681 9.71e-34 140
MS.gene009541.t1 AT4G10120 25.631 515 314 18 283 758 197 681 9.71e-34 140
MS.gene009541.t1 AT4G10120 25.051 491 307 15 302 758 17 480 1.39e-32 136
MS.gene009541.t1 AT1G04920 25.683 549 336 21 258 758 138 662 1.47e-32 136

Find 176 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCAGTTCATGGTTATTT+TGG 0.070641 5.3:+62458064 MS.gene009541:CDS
TGCAAACAAGTTGGTAAATA+TGG 0.130999 5.3:+62461164 MS.gene009541:CDS
TAATTTCTTATTCAAGAATT+TGG 0.152548 5.3:+62461263 MS.gene009541:CDS
CTTGCCATTGAGAAGATTAT+TGG 0.177357 5.3:-62460175 None:intergenic
GAAGAAGACAAGGTTAATTT+AGG 0.178184 5.3:-62456631 None:intergenic
GGATGCAGCAACCAAGATTT+TGG 0.185147 5.3:+62458969 MS.gene009541:intron
GGCCTATGTAGAGTTGTTTC+TGG 0.186575 5.3:+62459516 MS.gene009541:CDS
GACTTTGGAGCATTTGATAT+TGG 0.226670 5.3:+62456604 MS.gene009541:CDS
TGACATGAGAAGTGATATTT+AGG 0.235805 5.3:-62459261 None:intergenic
AAATTTGGTGGCATCATTAA+TGG 0.240820 5.3:+62459041 MS.gene009541:CDS
CAAACCTTCCAGCAATTTCT+TGG 0.245784 5.3:-62459341 None:intergenic
GGTTATTACTTGGAGCTTAA+TGG 0.249918 5.3:+62462102 MS.gene009541:intron
AAATTACACAGATGGAAATT+TGG 0.250139 5.3:+62459026 MS.gene009541:CDS
TTCAAGGACAACTGGGAAAT+TGG 0.253007 5.3:+62456693 MS.gene009541:CDS
GGGAAGCCAGATCTTGTTAT+TGG 0.282391 5.3:+62459003 MS.gene009541:CDS
TGGGGAACACTTACACCTTT+TGG 0.282985 5.3:+62461184 MS.gene009541:CDS
GGTTGCTTGCCAACTGGTTT+TGG 0.291946 5.3:-62461429 None:intergenic
CATATGTAGCCTTTGCAATT+AGG 0.298129 5.3:+62455998 MS.gene009541:CDS
CATGCTGCATTTACTCTTCC+AGG 0.298265 5.3:+62459495 MS.gene009541:CDS
ATCACTACTTTGAATATTGT+TGG 0.304732 5.3:-62458040 None:intergenic
CATGAAACTTCATGAATTAA+TGG 0.308219 5.3:+62455644 MS.gene009541:CDS
CTTCCTTTCAGGTTATTACT+TGG 0.312619 5.3:+62462092 MS.gene009541:intron
ACTTTGGAGCATTTGATATT+GGG 0.313644 5.3:+62456605 MS.gene009541:CDS
TTAACCTTGTCTTCTTCAAT+TGG 0.317572 5.3:+62456637 MS.gene009541:CDS
ATAACAGGTTGTTTACATAT+TGG 0.318845 5.3:+62458417 MS.gene009541:intron
TTCTTAACTTCAAGGACAAC+TGG 0.323354 5.3:+62456685 MS.gene009541:CDS
TTGTCTTCTTCAATTGGAAA+TGG 0.326217 5.3:+62456643 MS.gene009541:CDS
TTTGGGCAAGCAGATGTTCT+TGG 0.338987 5.3:+62458082 MS.gene009541:CDS
AAATGAAAGAAATTATGTTT+TGG 0.349393 5.3:+62455695 MS.gene009541:CDS
GTAGTGATCTTCTCAGTTCA+TGG 0.349932 5.3:+62458055 MS.gene009541:CDS
TTCCATTAGGTCCAAAATCT+TGG 0.351148 5.3:-62458980 None:intergenic
TTTCAAAGTTCTTAACTTCA+AGG 0.358243 5.3:+62456677 MS.gene009541:CDS
CCTGCTTTGTATGAAGCATT+TGG 0.360209 5.3:+62460472 MS.gene009541:CDS
ACACCCTTTCCTTGAATTTG+AGG 0.366684 5.3:-62456098 None:intergenic
TACTCCCAGACTCCTGGATT+TGG 0.368840 5.3:-62456021 None:intergenic
GCAAAGTAGATCCATCATAT+TGG 0.388106 5.3:+62460653 MS.gene009541:CDS
TAAAGAATTTGTCCGCTTCA+AGG 0.389301 5.3:-62455535 None:intergenic
GGAGGTTCATCACTTGGAAT+AGG 0.389616 5.3:-62461408 None:intergenic
ATAAGAAATTATAGAACATA+TGG 0.396630 5.3:-62461251 None:intergenic
GCAAACAAGTTGGTAAATAT+GGG 0.397058 5.3:+62461165 MS.gene009541:CDS
AGCAATTTCTTGGTATGTAC+TGG 0.397249 5.3:-62459331 None:intergenic
TCACTTCTCATGTCAATTCA+TGG 0.397520 5.3:+62459269 MS.gene009541:CDS
ATCAAAAGACAGAGAGGAAA+TGG 0.399897 5.3:+62460309 MS.gene009541:CDS
ATTTCTAGGTTCACTGGATC+CGG 0.401056 5.3:-62458001 None:intergenic
TCATTAATGGCTAGAAAACT+TGG 0.402888 5.3:+62459054 MS.gene009541:CDS
TAGCAAAACACTTCTTCATA+TGG 0.411596 5.3:-62455596 None:intergenic
TTCATTTATGCGCTGCAATC+CGG 0.411646 5.3:-62460692 None:intergenic
ATAATTGTTGATGGTGTCTC+AGG 0.422446 5.3:+62460565 MS.gene009541:CDS
TTTACCTGGCCACCAGTGTC+TGG 0.422921 5.3:-62458109 None:intergenic
GATCTGGCTTCCCTTCCATT+AGG 0.423211 5.3:-62458993 None:intergenic
AGACTCACCACAAGAATTTG+AGG 0.424284 5.3:-62458505 None:intergenic
TAATTTCCAATAACAAGATC+TGG 0.429386 5.3:-62459009 None:intergenic
TTAGGCCAAATCCAGGAGTC+TGG 0.431019 5.3:+62456016 MS.gene009541:CDS
CAATGTGGATTGTGAACGTC+TGG 0.431421 5.3:-62461991 None:intergenic
ACGTAGAATGTGAGAGTGTT+TGG 0.432164 5.3:-62458673 None:intergenic
TGTTATCTACTTTGTTAAAG+AGG 0.432624 5.3:-62459659 None:intergenic
AATGCATTTGAAGCAGACTT+TGG 0.434330 5.3:+62456589 MS.gene009541:CDS
CTTCTTCCAAAGCCTTGACT+TGG 0.437629 5.3:-62458441 None:intergenic
ATTGGACCAAGTCAAGGCTT+TGG 0.438859 5.3:+62458435 MS.gene009541:CDS
CTACTCTGCTTCAATGCATC+AGG 0.439087 5.3:-62455570 None:intergenic
AGATAATGCAGGAAGGGTGA+AGG 0.439483 5.3:+62457943 MS.gene009541:CDS
ACTTAAGCGGGTTAGTTGAA+TGG 0.440702 5.3:+62460215 MS.gene009541:CDS
TTTGTTAGCTTGCTTCCAAA+AGG 0.443692 5.3:-62461199 None:intergenic
GCCTATGTAGAGTTGTTTCT+GGG 0.445424 5.3:+62459517 MS.gene009541:CDS
ATTCCTTTCTCTGTATGAAA+AGG 0.447223 5.3:-62458699 None:intergenic
CCATCAACAATTATTTCTGC+TGG 0.448191 5.3:-62460556 None:intergenic
GGTTCACTGGATCCGGAGCT+TGG 0.459186 5.3:-62457994 None:intergenic
TTTGCTAAGTACCTAGAAAA+GGG 0.461640 5.3:+62455612 MS.gene009541:CDS
CTTGCCAGACACTGGTGGCC+AGG 0.463571 5.3:+62458105 MS.gene009541:CDS
GAGTAAACCTCTCAAGATAA+GGG 0.468220 5.3:-62458755 None:intergenic
CACTTAGTTCCTCTAGCATC+AGG 0.468958 5.3:-62458621 None:intergenic
TGTACTGGTTATGATAAAAT+CGG 0.469449 5.3:-62459316 None:intergenic
AGAGTTGGTTGCTTGCCAAC+TGG 0.472054 5.3:-62461435 None:intergenic
CATTGATTGGTTCAAACTCC+TGG 0.474899 5.3:-62458647 None:intergenic
CGATGCATTGCCGACACAAA+GGG 0.475516 5.3:+62460436 MS.gene009541:CDS
CACAGATTACCTCAAATTCA+AGG 0.476544 5.3:+62456089 MS.gene009541:CDS
GAAATCACGTTCCAATATGA+TGG 0.477070 5.3:-62460664 None:intergenic
GAGTGTTTGGTATCATTGAT+TGG 0.478819 5.3:-62458660 None:intergenic
GTCCGCTTCAAGGTATGTGT+TGG 0.479582 5.3:-62455525 None:intergenic
CGTACATACTCCCAGACTCC+TGG 0.479613 5.3:-62456027 None:intergenic
CTTGAATTTGAGGTAATCTG+TGG 0.479667 5.3:-62456088 None:intergenic
TGAGTAAACCTCTCAAGATA+AGG 0.482349 5.3:-62458756 None:intergenic
GAAAGGAATCTTGCGCCAAT+GGG 0.483913 5.3:+62458713 MS.gene009541:CDS
AAGAGGAGATCTTCAATAGC+AGG 0.484163 5.3:-62459642 None:intergenic
AGAAAGGAATCTTGCGCCAA+TGG 0.485834 5.3:+62458712 MS.gene009541:CDS
AGTACATACCAAGAAATTGC+TGG 0.486522 5.3:+62459333 MS.gene009541:CDS
AAAGGATGGGGAGATAATGC+AGG 0.486672 5.3:+62457932 MS.gene009541:CDS
CCAGCAGAAATAATTGTTGA+TGG 0.490757 5.3:+62460556 MS.gene009541:CDS
ATGAAGACTCAGATGTTAAG+TGG 0.491444 5.3:+62459226 MS.gene009541:CDS
CTAATTGCAAAGGCTACATA+TGG 0.493536 5.3:-62455997 None:intergenic
GTTCACAATCCACATTGAAA+AGG 0.494536 5.3:+62461997 MS.gene009541:CDS
GAACAAGCGGCTAAGAAACT+TGG 0.495244 5.3:+62460246 MS.gene009541:CDS
AGGTGAAGCTATATTGAACT+TGG 0.506881 5.3:-62459556 None:intergenic
GAGCCTTGTTGTTTGAGAGT+TGG 0.508078 5.3:-62461450 None:intergenic
GTTATTGGAAATTACACAGA+TGG 0.508428 5.3:+62459018 MS.gene009541:CDS
TTGAATTTGAGGTAATCTGT+GGG 0.512878 5.3:-62456087 None:intergenic
CTTGATTCATCTCCATTGAG+AGG 0.513096 5.3:-62460601 None:intergenic
AGCGGGTTAGTTGAATGGTA+TGG 0.513516 5.3:+62460220 MS.gene009541:CDS
GAAACCAATAATCTTCTCAA+TGG 0.514548 5.3:+62460171 MS.gene009541:CDS
TTACCTCAAATTCAAGGAAA+GGG 0.515471 5.3:+62456095 MS.gene009541:CDS
GTTCTTGGCTTGCCAGACAC+TGG 0.515609 5.3:+62458097 MS.gene009541:CDS
ATCAGAAGTACTCCAAGCTC+CGG 0.522664 5.3:+62457982 MS.gene009541:CDS
TTCCACATTGATCCTCTCAA+TGG 0.523550 5.3:+62460589 MS.gene009541:CDS
GGCAAAAGCACAGACTATAG+TGG 0.530206 5.3:+62456714 MS.gene009541:CDS
GATAAATGACACGCTGAGCT+CGG 0.532444 5.3:+62456882 MS.gene009541:CDS
CTTAACTTTGACAGGTAACA+AGG 0.533143 5.3:+62458592 MS.gene009541:intron
CCTTGATTAGTAGCAAAAGT+TGG 0.536164 5.3:-62460529 None:intergenic
ATTACCTCAAATTCAAGGAA+AGG 0.536681 5.3:+62456094 MS.gene009541:CDS
TTTGCAATTAGGCCAAATCC+AGG 0.538416 5.3:+62456009 MS.gene009541:CDS
CTCGGCTGCAAAGCTTCAGA+TGG 0.543389 5.3:+62456900 MS.gene009541:CDS
GAAGATCTATGCAAACAAGT+TGG 0.543446 5.3:+62461155 MS.gene009541:CDS
GAAACAACTCTACATAGGCC+TGG 0.545252 5.3:-62459513 None:intergenic
CTCTCAAACAACAAGGCTCT+AGG 0.545501 5.3:+62461454 MS.gene009541:CDS
ATGTTGTGAAGAACTTAAGC+GGG 0.548780 5.3:+62460203 MS.gene009541:CDS
TTACACAGATGGAAATTTGG+TGG 0.550864 5.3:+62459029 MS.gene009541:CDS
TCATGAATTAATGGAAGAAG+TGG 0.551105 5.3:+62455653 MS.gene009541:CDS
CTTGGCTTGCCAGACACTGG+TGG 0.554446 5.3:+62458100 MS.gene009541:CDS
CCAAATGCTTCATACAAAGC+AGG 0.557880 5.3:-62460472 None:intergenic
TTCTAAGAATTAAGCAACAA+GGG 0.558053 5.3:+62458470 MS.gene009541:CDS
AACAAAAGCTCCCTTTGTGT+CGG 0.558432 5.3:-62460446 None:intergenic
TAGGCCAAATCCAGGAGTCT+GGG 0.558832 5.3:+62456017 MS.gene009541:CDS
TTGTTGAAACTAAATCATCA+TGG 0.559548 5.3:+62456742 MS.gene009541:CDS
AACTAAAGGGACAATTCAGA+TGG 0.563580 5.3:+62460371 MS.gene009541:CDS
TTATCTTGAGAGGTTTACTC+AGG 0.564285 5.3:+62458758 MS.gene009541:CDS
TTATAAACCTCAAATTCTTG+TGG 0.564326 5.3:+62458498 MS.gene009541:CDS
ATTGCAAAGGCTACATATGG+TGG 0.571806 5.3:-62455994 None:intergenic
CAATAATCTTCTCAATGGCA+AGG 0.572371 5.3:+62460176 MS.gene009541:CDS
GATTGCAGCGCATAAATGAA+TGG 0.573820 5.3:+62460695 MS.gene009541:CDS
ACATTTACCCTTATCTTGAG+AGG 0.575762 5.3:+62458748 MS.gene009541:CDS
TGGATTTGGCCTAATTGCAA+AGG 0.577939 5.3:-62456007 None:intergenic
CTTTATATTGAGCTCTACAC+AGG 0.580216 5.3:+62455731 MS.gene009541:CDS
AGTACCTAGAAAAGGGGAGA+AGG 0.582580 5.3:+62455619 MS.gene009541:CDS
GTGAACCTTGTCATAGTCGG+TGG 0.584258 5.3:+62460268 MS.gene009541:CDS
TGTCGAAGCGAGAAACCCAT+TGG 0.584554 5.3:-62458728 None:intergenic
GTGGATATCTAGCAGAGAAG+AGG 0.585549 5.3:+62460149 MS.gene009541:intron
TCTTAACTTCAAGGACAACT+GGG 0.587344 5.3:+62456686 MS.gene009541:CDS
CATTAATGGCTAGAAAACTT+GGG 0.588048 5.3:+62459055 MS.gene009541:CDS
TGGAACGTGATTTCTGCGGC+CGG 0.591424 5.3:+62460673 MS.gene009541:CDS
ATGGGGAGATAATGCAGGAA+GGG 0.592050 5.3:+62457937 MS.gene009541:CDS
ATTCTAAGAATTAAGCAACA+AGG 0.594252 5.3:+62458469 MS.gene009541:CDS
GGAGTATGTACGTGTCAACT+CGG 0.597670 5.3:+62456038 MS.gene009541:CDS
GATGGGGAGATAATGCAGGA+AGG 0.601426 5.3:+62457936 MS.gene009541:CDS
TTGCTAAGTACCTAGAAAAG+GGG 0.602169 5.3:+62455613 MS.gene009541:CDS
TTACATATTGGACCAAGTCA+AGG 0.606244 5.3:+62458429 MS.gene009541:CDS
TCGATGCATTGCCGACACAA+AGG 0.607087 5.3:+62460435 MS.gene009541:CDS
TAGAAAACTTGGGATAACTC+AGG 0.607985 5.3:+62459065 MS.gene009541:CDS
TAGAGGAACTAAGTGCCACC+AGG 0.609338 5.3:+62458629 MS.gene009541:CDS
CAAACAAGTTGGTAAATATG+GGG 0.611526 5.3:+62461166 MS.gene009541:CDS
AGCTAACAAAGAGCAAAATG+AGG 0.613966 5.3:+62461212 MS.gene009541:CDS
ATTTCCAATTGAAGAAGACA+AGG 0.616302 5.3:-62456641 None:intergenic
CTCGGAGGACCTCTCTGTTG+AGG 0.619017 5.3:+62456056 MS.gene009541:CDS
GGTGAAGCTATATTGAACTT+GGG 0.621197 5.3:-62459555 None:intergenic
GATGTTGTGAAGAACTTAAG+CGG 0.622437 5.3:+62460202 MS.gene009541:CDS
GATGAACCTCCAAAACCAGT+TGG 0.627880 5.3:+62461420 MS.gene009541:CDS
CAACCAACTCTCAAACAACA+AGG 0.628977 5.3:+62461447 MS.gene009541:CDS
AGAGGAGATCTTCAATAGCA+GGG 0.629949 5.3:-62459641 None:intergenic
TTCAAAATCAAAAGACAGAG+AGG 0.630615 5.3:+62460303 MS.gene009541:CDS
TCCCAGAAACAACTCTACAT+AGG 0.630829 5.3:-62459518 None:intergenic
CTCCAACACATACCTTGAAG+CGG 0.632080 5.3:+62455523 MS.gene009541:CDS
TTGGTGAACCTTGTCATAGT+CGG 0.633446 5.3:+62460265 MS.gene009541:CDS
AAGTTCAATATAGCTTCACC+TGG 0.636766 5.3:+62459558 MS.gene009541:CDS
AATGGTATGGCAAGAACAAG+CGG 0.638930 5.3:+62460233 MS.gene009541:CDS
TAGATACTTTGATCAGCACC+AGG 0.643107 5.3:-62459576 None:intergenic
GAATTTGAGGTAATCTGTGG+GGG 0.644323 5.3:-62456085 None:intergenic
CTGGAAGAGTAAATGCAGCA+TGG 0.646190 5.3:-62459494 None:intergenic
TGATTGGTTCAAACTCCTGG+TGG 0.652035 5.3:-62458644 None:intergenic
CATACCAAGAAATTGCTGGA+AGG 0.653894 5.3:+62459337 MS.gene009541:CDS
TGAATTTGAGGTAATCTGTG+GGG 0.661174 5.3:-62456086 None:intergenic
AGAAGCCACCGACTATGACA+AGG 0.683004 5.3:-62460273 None:intergenic
CTCCATTGAGAGGATCAATG+TGG 0.693616 5.3:-62460591 None:intergenic
GTCATTGAAGCAATGAACTG+TGG 0.697770 5.3:+62460502 MS.gene009541:CDS
ATATTGGAACGTGATTTCTG+CGG 0.707520 5.3:+62460669 MS.gene009541:CDS
CAGACTGATAGATATCGCAA+CGG 0.722489 5.3:+62460403 MS.gene009541:CDS
GGGTGATAGCCTCAACAGAG+AGG 0.723003 5.3:-62456065 None:intergenic
AGGTTGATACCTGATGCTAG+AGG 0.743701 5.3:+62458612 MS.gene009541:CDS
GTATGTACGTGTCAACTCGG+AGG 0.747738 5.3:+62456041 MS.gene009541:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACAAACATATTAAATTTA+AGG - chr5.3:62457795-62457814 None:intergenic 10.0%
!! AACAAATATTAATAAATGAA+AGG - chr5.3:62459376-62459395 None:intergenic 10.0%
!! TAGATTTATTTATATAATCT+TGG + chr5.3:62462021-62462040 MS.gene009541:intron 10.0%
!!! AAAATTGAACAATTTTTATA+AGG + chr5.3:62457722-62457741 MS.gene009541:intron 10.0%
!!! AATTTTAATTATAAGTAGTA+AGG + chr5.3:62458153-62458172 MS.gene009541:intron 10.0%
!!! ATAATTTTTATTGTTGAAAA+AGG - chr5.3:62457436-62457455 None:intergenic 10.0%
!!! TCAAGAATAATATTTTTTTT+GGG - chr5.3:62457238-62457257 None:intergenic 10.0%
!!! TTCAAGAATAATATTTTTTT+TGG - chr5.3:62457239-62457258 None:intergenic 10.0%
!! AAAAAAGATGTAACATAATT+AGG - chr5.3:62460813-62460832 None:intergenic 15.0%
!! AAAAAATTCTTCTTTATAGT+TGG + chr5.3:62457822-62457841 MS.gene009541:intron 15.0%
!! AAAAAGATGTAACATAATTA+GGG - chr5.3:62460812-62460831 None:intergenic 15.0%
!! AATTGAAAAATATCAACTAA+AGG + chr5.3:62460357-62460376 MS.gene009541:CDS 15.0%
!! ACAAAAATAGAAAGAATTTA+CGG - chr5.3:62461875-62461894 None:intergenic 15.0%
!! ACCTAAAAAAATGAAATTTA+TGG + chr5.3:62457750-62457769 MS.gene009541:intron 15.0%
!! AGATATGATTTAACATATAA+AGG - chr5.3:62461612-62461631 None:intergenic 15.0%
!! ATAAGAAATTATAGAACATA+TGG - chr5.3:62461254-62461273 None:intergenic 15.0%
!! ATTAAAATTAATGTTCCTTA+TGG - chr5.3:62458142-62458161 None:intergenic 15.0%
!! ATTGAAAAATATCAACTAAA+GGG + chr5.3:62460358-62460377 MS.gene009541:CDS 15.0%
!! ATTGATAGATTTATTTGTAT+TGG + chr5.3:62457373-62457392 MS.gene009541:intron 15.0%
!! CAAATAAGAAAATATTGTTT+CGG + chr5.3:62461532-62461551 MS.gene009541:intron 15.0%
!! CCTAAAAAAATGAAATTTAT+GGG + chr5.3:62457751-62457770 MS.gene009541:intron 15.0%
!! TAAGCAGTAAAAAAATTAAA+GGG - chr5.3:62460768-62460787 None:intergenic 15.0%
!! TAATCTCTAACAAAAAATTA+AGG - chr5.3:62457651-62457670 None:intergenic 15.0%
!! TAATTTCTTATTCAAGAATT+TGG + chr5.3:62461263-62461282 MS.gene009541:CDS 15.0%
!! TGTTAAATACATATTTAAGT+TGG + chr5.3:62461848-62461867 MS.gene009541:intron 15.0%
!! TTAAGCAGTAAAAAAATTAA+AGG - chr5.3:62460769-62460788 None:intergenic 15.0%
!!! AAAACTAAAGTATTAAAAGT+TGG + chr5.3:62458355-62458374 MS.gene009541:intron 15.0%
!!! AAATGAAAGAAATTATGTTT+TGG + chr5.3:62455695-62455714 MS.gene009541:CDS 15.0%
!!! AACTGAAAGTTTTAAAATTT+AGG - chr5.3:62460028-62460047 None:intergenic 15.0%
!!! ATTTTGTTTTAGAATTTTAG+AGG + chr5.3:62461491-62461510 MS.gene009541:intron 15.0%
!!! CAAGAATAATATTTTTTTTG+GGG - chr5.3:62457237-62457256 None:intergenic 15.0%
!!! CTTTTTATATTTTGTCTAAT+AGG + chr5.3:62455756-62455775 MS.gene009541:intron 15.0%
!!! TTAACATTTTCTATATTGTA+GGG + chr5.3:62456555-62456574 MS.gene009541:intron 15.0%
!! AATATTATTCTTGAAGTAGT+CGG + chr5.3:62457244-62457263 MS.gene009541:intron 20.0%
!! AGACAATAGTCATAATTAAA+TGG + chr5.3:62457458-62457477 MS.gene009541:intron 20.0%
!! AGACAATTATTGATGAAATT+GGG + chr5.3:62457549-62457568 MS.gene009541:intron 20.0%
!! ATAGTTATATACTTCTGATA+TGG + chr5.3:62457079-62457098 MS.gene009541:intron 20.0%
!! ATCACAAGAATTAAAAAAGT+TGG - chr5.3:62460933-62460952 None:intergenic 20.0%
!! CAAGTAGAGTTTAAAAAAAA+TGG - chr5.3:62457162-62457181 None:intergenic 20.0%
!! CTTTAACCTGAAAATAAAAT+TGG - chr5.3:62457897-62457916 None:intergenic 20.0%
!! GACTAAAATTAACAAATCTT+AGG - chr5.3:62457629-62457648 None:intergenic 20.0%
!! TATAATTCTTCGTAATATCA+AGG - chr5.3:62457062-62457081 None:intergenic 20.0%
!! TGAAAATAAAATTGGCATTA+GGG - chr5.3:62457889-62457908 None:intergenic 20.0%
!! TTGAAAGGAAAACTAAATAA+AGG - chr5.3:62459104-62459123 None:intergenic 20.0%
!! TTGAAGCTAAGAAAATTATA+TGG - chr5.3:62461004-62461023 None:intergenic 20.0%
!!! ATTCGCTTTTGAAATTATTA+TGG + chr5.3:62460121-62460140 MS.gene009541:intron 20.0%
!!! CAATTTTATTTTCAGGTTAA+AGG + chr5.3:62457895-62457914 MS.gene009541:intron 20.0%
!!! CATTTTTCTCTCATTATTAT+CGG - chr5.3:62461766-62461785 None:intergenic 20.0%
!!! CCCATAAATTTCATTTTTTT+AGG - chr5.3:62457754-62457773 None:intergenic 20.0%
!!! CTTAACATTTTCTATATTGT+AGG + chr5.3:62456554-62456573 MS.gene009541:intron 20.0%
!!! TTTGCATTTTTCAAAGAAAT+CGG - chr5.3:62460638-62460657 None:intergenic 20.0%
!!! TTTTCCTTTCAATATTTTTG+TGG + chr5.3:62459112-62459131 MS.gene009541:intron 20.0%
! AAAACTCACTATGCAATAAT+TGG - chr5.3:62461328-62461347 None:intergenic 25.0%
! AAAAGCGAATATCAATCATT+TGG - chr5.3:62460067-62460086 None:intergenic 25.0%
! AAAGAATATGTAACTGTTGT+TGG - chr5.3:62456815-62456834 None:intergenic 25.0%
! AAATCGCCATTTAAAAATGT+TGG - chr5.3:62457594-62457613 None:intergenic 25.0%
! AAATTACACAGATGGAAATT+TGG + chr5.3:62459026-62459045 MS.gene009541:CDS 25.0%
! AATATACTCTTAACTTTGAC+AGG + chr5.3:62458584-62458603 MS.gene009541:intron 25.0%
! AATCGCCATTTAAAAATGTT+GGG - chr5.3:62457593-62457612 None:intergenic 25.0%
! AATTAAAGGGTCGTATAAAA+AGG - chr5.3:62460755-62460774 None:intergenic 25.0%
! ACCAACTATGTTTATAATCT+TGG + chr5.3:62457024-62457043 MS.gene009541:intron 25.0%
! ACCAAGATTATAAACATAGT+TGG - chr5.3:62457028-62457047 None:intergenic 25.0%
! AGAGACACATAAATCTTATA+AGG - chr5.3:62461696-62461715 None:intergenic 25.0%
! AGCTCAATGTTTATTATTTG+AGG - chr5.3:62457290-62457309 None:intergenic 25.0%
! ATAACAGGTTGTTTACATAT+TGG + chr5.3:62458417-62458436 MS.gene009541:intron 25.0%
! ATCACTACTTTGAATATTGT+TGG - chr5.3:62458043-62458062 None:intergenic 25.0%
! ATTAAAGGGTCGTATAAAAA+GGG - chr5.3:62460754-62460773 None:intergenic 25.0%
! ATTAATATCAACCAAAGTGT+TGG - chr5.3:62458948-62458967 None:intergenic 25.0%
! CAGACAATTATTGATGAAAT+TGG + chr5.3:62457548-62457567 MS.gene009541:intron 25.0%
! CATATCAAAAATTTGAGCTA+AGG + chr5.3:62456971-62456990 MS.gene009541:CDS 25.0%
! CATGAAACTTCATGAATTAA+TGG + chr5.3:62455644-62455663 MS.gene009541:CDS 25.0%
! CCTTATTGTGATTGAAAATT+AGG + chr5.3:62459170-62459189 MS.gene009541:intron 25.0%
! CGAATGTATATAGTCTAATT+TGG - chr5.3:62461660-62461679 None:intergenic 25.0%
! CTGAAAATAAAATTGGCATT+AGG - chr5.3:62457890-62457909 None:intergenic 25.0%
! CTGTTTGAATATCTTATGTA+AGG + chr5.3:62456189-62456208 MS.gene009541:intron 25.0%
! TAATTTCCAATAACAAGATC+TGG - chr5.3:62459012-62459031 None:intergenic 25.0%
! TACTATCTTAGAATTTGAGT+TGG - chr5.3:62459826-62459845 None:intergenic 25.0%
! TGAAATTATTATGGAAACAG+TGG + chr5.3:62460130-62460149 MS.gene009541:intron 25.0%
! TGTTATCTACTTTGTTAAAG+AGG - chr5.3:62459662-62459681 None:intergenic 25.0%
! TTATAAACCTCAAATTCTTG+TGG + chr5.3:62458498-62458517 MS.gene009541:CDS 25.0%
! TTATAAGATTTATGTGTCTC+TGG + chr5.3:62461695-62461714 MS.gene009541:intron 25.0%
! TTCTGCTGAAAAATATTTCT+AGG - chr5.3:62458018-62458037 None:intergenic 25.0%
! TTGTTGAAACTAAATCATCA+TGG + chr5.3:62456742-62456761 MS.gene009541:CDS 25.0%
! TTTCAAAGTTCTTAACTTCA+AGG + chr5.3:62456677-62456696 MS.gene009541:CDS 25.0%
! TTTCAATCACAATAAGGAAT+TGG - chr5.3:62459167-62459186 None:intergenic 25.0%
!! AAGAAAATTATATGGCTTGT+TGG - chr5.3:62460996-62461015 None:intergenic 25.0%
!! ACACTTTGGTTGATATTAAT+AGG + chr5.3:62458948-62458967 MS.gene009541:intron 25.0%
!! ATTCTAAGAATTAAGCAACA+AGG + chr5.3:62458469-62458488 MS.gene009541:CDS 25.0%
!! CCTAATTTTCAATCACAATA+AGG - chr5.3:62459173-62459192 None:intergenic 25.0%
!! GTTAAGTGAATCTATCTTTT+TGG - chr5.3:62456521-62456540 None:intergenic 25.0%
!! GTTTGCAATTAAACTTGTTT+GGG - chr5.3:62457315-62457334 None:intergenic 25.0%
!! TAAATCTAACCTTTTCAATG+TGG - chr5.3:62462009-62462028 None:intergenic 25.0%
!! TGTTTATTATTTGAGGTAGT+CGG - chr5.3:62457283-62457302 None:intergenic 25.0%
!! TGTTTGCAATTAAACTTGTT+TGG - chr5.3:62457316-62457335 None:intergenic 25.0%
!! TTCTAAGAATTAAGCAACAA+GGG + chr5.3:62458470-62458489 MS.gene009541:CDS 25.0%
!! TTTGCAATTAAACTTGTTTG+GGG - chr5.3:62457314-62457333 None:intergenic 25.0%
!! TTTTCTATTACGGTAAAAAG+CGG + chr5.3:62458847-62458866 MS.gene009541:intron 25.0%
!! TTTTGCCCAACATTTTTAAA+TGG + chr5.3:62457585-62457604 MS.gene009541:intron 25.0%
!! TTTTGTCTTTTTCTGTGTAA+GGG - chr5.3:62459605-62459624 None:intergenic 25.0%
!!! AAAAATATTTCTAGGTTCAC+TGG - chr5.3:62458010-62458029 None:intergenic 25.0%
!!! AGCAAGTGTTTTTTTTAGTA+AGG - chr5.3:62462074-62462093 None:intergenic 25.0%
!!! AGTAGTAAGGTTTTAAATCA+CGG + chr5.3:62458166-62458185 MS.gene009541:intron 25.0%
!!! CTAATGCCAATTTTATTTTC+AGG + chr5.3:62457888-62457907 MS.gene009541:intron 25.0%
!!! GAAAGAAATTATGTTTTGGA+GGG + chr5.3:62455699-62455718 MS.gene009541:CDS 25.0%
!!! TGAAAGAAATTATGTTTTGG+AGG + chr5.3:62455698-62455717 MS.gene009541:CDS 25.0%
!!! TGTAAACAACCTGTTATTTT+TGG - chr5.3:62458414-62458433 None:intergenic 25.0%
!!! TGTACTGGTTATGATAAAAT+CGG - chr5.3:62459319-62459338 None:intergenic 25.0%
!!! TTAGCCTTTGAATTTTAATG+TGG + chr5.3:62455939-62455958 MS.gene009541:intron 25.0%
!!! TTCTTTTTTCCTTTTCTTCT+TGG + chr5.3:62461959-62461978 MS.gene009541:intron 25.0%
!!! TTGTATTGGTTTGATACTTT+CGG + chr5.3:62457387-62457406 MS.gene009541:intron 25.0%
!!! TTTTGATATGAAGTGTCTTT+TGG - chr5.3:62456961-62456980 None:intergenic 25.0%
!!! TTTTTTCTTGTAGCTATACT+TGG + chr5.3:62461133-62461152 MS.gene009541:intron 25.0%
AAAATGCGTTTATAAGTGGT+GGG + chr5.3:62459949-62459968 MS.gene009541:intron 30.0%
AAAGAATTGCATCTACGATT+TGG - chr5.3:62458302-62458321 None:intergenic 30.0%
AAAGTTCATAAGAGCGAAAA+AGG - chr5.3:62458917-62458936 None:intergenic 30.0%
AAATGTTTAATGTGCAAGTG+TGG - chr5.3:62459711-62459730 None:intergenic 30.0%
AAGAATTGCATCTACGATTT+GGG - chr5.3:62458301-62458320 None:intergenic 30.0%
AAGACTCATTTGAGGATATA+AGG + chr5.3:62459738-62459757 MS.gene009541:intron 30.0%
AATCTTGTCACTACTCAAAT+TGG + chr5.3:62458326-62458345 MS.gene009541:intron 30.0%
AATGTTTAATGTGCAAGTGT+GGG - chr5.3:62459710-62459729 None:intergenic 30.0%
AGCTTGCAAAAAATTTATGC+AGG - chr5.3:62457850-62457869 None:intergenic 30.0%
AGTCTACTTAAGATCCAATT+GGG + chr5.3:62459850-62459869 MS.gene009541:intron 30.0%
ATTACCTCAAATTCAAGGAA+AGG + chr5.3:62456094-62456113 MS.gene009541:CDS 30.0%
ATTCCTTTCTCTGTATGAAA+AGG - chr5.3:62458702-62458721 None:intergenic 30.0%
ATTTCCAATTGAAGAAGACA+AGG - chr5.3:62456644-62456663 None:intergenic 30.0%
CAACTTAAAACCATAGTACA+AGG - chr5.3:62458811-62458830 None:intergenic 30.0%
CAGGTAAAATTTCTACCATA+AGG + chr5.3:62458124-62458143 MS.gene009541:intron 30.0%
CATATGTATGAATGTCAAGT+CGG + chr5.3:62461802-62461821 MS.gene009541:intron 30.0%
CATTAATGGCTAGAAAACTT+GGG + chr5.3:62459055-62459074 MS.gene009541:CDS 30.0%
CTACCTATGTCCTTAAATAT+AGG - chr5.3:62460970-62460989 None:intergenic 30.0%
GAAACCAATAATCTTCTCAA+TGG + chr5.3:62460171-62460190 MS.gene009541:CDS 30.0%
GAAGAAGACAAGGTTAATTT+AGG - chr5.3:62456634-62456653 None:intergenic 30.0%
GTTATTGGAAATTACACAGA+TGG + chr5.3:62459018-62459037 MS.gene009541:CDS 30.0%
TAGCAAAACACTTCTTCATA+TGG - chr5.3:62455599-62455618 None:intergenic 30.0%
TCAACACTGTCCTATATTTA+AGG + chr5.3:62460957-62460976 MS.gene009541:intron 30.0%
TCATGAATTAATGGAAGAAG+TGG + chr5.3:62455653-62455672 MS.gene009541:CDS 30.0%
TCATTAATGGCTAGAAAACT+TGG + chr5.3:62459054-62459073 MS.gene009541:CDS 30.0%
TCTGTTAAAAGACTCATTTG+AGG + chr5.3:62459730-62459749 MS.gene009541:intron 30.0%
TGACATGAGAAGTGATATTT+AGG - chr5.3:62459264-62459283 None:intergenic 30.0%
TGCACCACATTAAAATTCAA+AGG - chr5.3:62455946-62455965 None:intergenic 30.0%
TGTCCTATATTTAAGGACAT+AGG + chr5.3:62460964-62460983 MS.gene009541:intron 30.0%
TTAACCTTGTCTTCTTCAAT+TGG + chr5.3:62456637-62456656 MS.gene009541:CDS 30.0%
TTACCTCAAATTCAAGGAAA+GGG + chr5.3:62456095-62456114 MS.gene009541:CDS 30.0%
TTCAAAATCAAAAGACAGAG+AGG + chr5.3:62460303-62460322 MS.gene009541:CDS 30.0%
TTGTCTTCTTCAATTGGAAA+TGG + chr5.3:62456643-62456662 MS.gene009541:CDS 30.0%
TTTGCTAAGTACCTAGAAAA+GGG + chr5.3:62455612-62455631 MS.gene009541:CDS 30.0%
! AAATTTGGTGGCATCATTAA+TGG + chr5.3:62459041-62459060 MS.gene009541:CDS 30.0%
! AAGCGGTCTTTTATAAACAT+CGG - chr5.3:62456328-62456347 None:intergenic 30.0%
! CAATTTTCTTAACTGCACAA+AGG - chr5.3:62461907-62461926 None:intergenic 30.0%
! CTTATGGTAGAAATTTTACC+TGG - chr5.3:62458126-62458145 None:intergenic 30.0%
! CTTTTGTCTTTTTCTGTGTA+AGG - chr5.3:62459606-62459625 None:intergenic 30.0%
! GAATTTGGTTAGTCAATGTT+TGG + chr5.3:62461278-62461297 MS.gene009541:intron 30.0%
! GAGAAATGACATACCATTTT+TGG - chr5.3:62456128-62456147 None:intergenic 30.0%
! TTAAATGGACAACGAGTTTT+TGG + chr5.3:62457473-62457492 MS.gene009541:intron 30.0%
! TTCTCAGTTCATGGTTATTT+TGG + chr5.3:62458064-62458083 MS.gene009541:CDS 30.0%
! TTGAATTTGAGGTAATCTGT+GGG - chr5.3:62456090-62456109 None:intergenic 30.0%
! TTTTGCTAAGTACCTAGAAA+AGG + chr5.3:62455611-62455630 MS.gene009541:CDS 30.0%
!! ACTTTGGAGCATTTGATATT+GGG + chr5.3:62456605-62456624 MS.gene009541:CDS 30.0%
!! AGTGAATCTATCTTTTTGGT+AGG - chr5.3:62456517-62456536 None:intergenic 30.0%
!! CAAAACATAGTTCTAAACTG+CGG - chr5.3:62458892-62458911 None:intergenic 30.0%
!! CAAACAAGTTGGTAAATATG+GGG + chr5.3:62461166-62461185 MS.gene009541:CDS 30.0%
!! GCAAACAAGTTGGTAAATAT+GGG + chr5.3:62461165-62461184 MS.gene009541:CDS 30.0%
!! GTTTTTGATTACTCAATGTC+TGG - chr5.3:62455881-62455900 None:intergenic 30.0%
!! TCTCAGTTCATGGTTATTTT+GGG + chr5.3:62458065-62458084 MS.gene009541:CDS 30.0%
!! TGCAAACAAGTTGGTAAATA+TGG + chr5.3:62461164-62461183 MS.gene009541:CDS 30.0%
!! TTTACAAACCGGTTTTGTAA+GGG + chr5.3:62459982-62460001 MS.gene009541:intron 30.0%
!!! CAAGGTTTTTTTTTAAGTCG+CGG - chr5.3:62457111-62457130 None:intergenic 30.0%
!!! CGATTTTTTACCTTGTACTA+TGG + chr5.3:62458798-62458817 MS.gene009541:intron 30.0%
!!! CTCTGTCTTTTGATTTTGAA+GGG - chr5.3:62460303-62460322 None:intergenic 30.0%
!!! GTTTTAGAATTTTAGAGGCT+CGG + chr5.3:62461496-62461515 MS.gene009541:intron 30.0%
!!! TATTTTCAGGTTAAAGGAGT+GGG + chr5.3:62457901-62457920 MS.gene009541:intron 30.0%
!!! TCTCTGTCTTTTGATTTTGA+AGG - chr5.3:62460304-62460323 None:intergenic 30.0%
!!! TTATTTTCAGGTTAAAGGAG+TGG + chr5.3:62457900-62457919 MS.gene009541:intron 30.0%
AAAAACACTTGCTTCCTTTC+AGG + chr5.3:62462081-62462100 MS.gene009541:intron 35.0%
AACTAAAGGGACAATTCAGA+TGG + chr5.3:62460371-62460390 MS.gene009541:CDS 35.0%
AAGTTCAATATAGCTTCACC+TGG + chr5.3:62459558-62459577 MS.gene009541:CDS 35.0%
AATCATCATGGAGAAGTAAG+TGG + chr5.3:62456754-62456773 MS.gene009541:intron 35.0%
ACATTTACCCTTATCTTGAG+AGG + chr5.3:62458748-62458767 MS.gene009541:CDS 35.0%
ACTCAACCCTTACAATCTTA+CGG - chr5.3:62459798-62459817 None:intergenic 35.0%
AGCAATTTCTTGGTATGTAC+TGG - chr5.3:62459334-62459353 None:intergenic 35.0%
AGCTAACAAAGAGCAAAATG+AGG + chr5.3:62461212-62461231 MS.gene009541:CDS 35.0%
AGCTACTAACTAATCTTTCG+AGG - chr5.3:62456387-62456406 None:intergenic 35.0%
AGGTGAAGCTATATTGAACT+TGG - chr5.3:62459559-62459578 None:intergenic 35.0%
AGTACATACCAAGAAATTGC+TGG + chr5.3:62459333-62459352 MS.gene009541:CDS 35.0%
ATATTGGAACGTGATTTCTG+CGG + chr5.3:62460669-62460688 MS.gene009541:CDS 35.0%
ATCAAAAGACAGAGAGGAAA+TGG + chr5.3:62460309-62460328 MS.gene009541:CDS 35.0%
ATGAAGACTCAGATGTTAAG+TGG + chr5.3:62459226-62459245 MS.gene009541:CDS 35.0%
ATGTTGTGAAGAACTTAAGC+GGG + chr5.3:62460203-62460222 MS.gene009541:CDS 35.0%
CAATAATCTTCTCAATGGCA+AGG + chr5.3:62460176-62460195 MS.gene009541:CDS 35.0%
CACAGATTACCTCAAATTCA+AGG + chr5.3:62456089-62456108 MS.gene009541:CDS 35.0%
CATATGTAGCCTTTGCAATT+AGG + chr5.3:62455998-62456017 MS.gene009541:CDS 35.0%
CCAGCAGAAATAATTGTTGA+TGG + chr5.3:62460556-62460575 MS.gene009541:CDS 35.0%
CCTGAAAATGCGTTTATAAG+TGG + chr5.3:62459945-62459964 MS.gene009541:intron 35.0%
CCTTGATTAGTAGCAAAAGT+TGG - chr5.3:62460532-62460551 None:intergenic 35.0%
CGACTTGACATTCATACATA+TGG - chr5.3:62461804-62461823 None:intergenic 35.0%
CTAATTGCAAAGGCTACATA+TGG - chr5.3:62456000-62456019 None:intergenic 35.0%
CTCATTTGAGGATATAAGGT+AGG + chr5.3:62459742-62459761 MS.gene009541:intron 35.0%
CTTAACTTTGACAGGTAACA+AGG + chr5.3:62458592-62458611 MS.gene009541:intron 35.0%
CTTCATTCTCTCCAATGTTA+AGG - chr5.3:62458224-62458243 None:intergenic 35.0%
CTTGCCATTGAGAAGATTAT+TGG - chr5.3:62460178-62460197 None:intergenic 35.0%
CTTTATATTGAGCTCTACAC+AGG + chr5.3:62455731-62455750 MS.gene009541:CDS 35.0%
GAAAATGCGTTTATAAGTGG+TGG + chr5.3:62459948-62459967 MS.gene009541:intron 35.0%
GAAATCACGTTCCAATATGA+TGG - chr5.3:62460667-62460686 None:intergenic 35.0%
GAAGATCTATGCAAACAAGT+TGG + chr5.3:62461155-62461174 MS.gene009541:CDS 35.0%
GAGTAAACCTCTCAAGATAA+GGG - chr5.3:62458758-62458777 None:intergenic 35.0%
GAGTCTACTTAAGATCCAAT+TGG + chr5.3:62459849-62459868 MS.gene009541:intron 35.0%
GAGTGTTTGGTATCATTGAT+TGG - chr5.3:62458663-62458682 None:intergenic 35.0%
GATGTTGTGAAGAACTTAAG+CGG + chr5.3:62460202-62460221 MS.gene009541:CDS 35.0%
GCAAAGTAGATCCATCATAT+TGG + chr5.3:62460653-62460672 MS.gene009541:CDS 35.0%
GCAGCCACAAAAATATTGAA+AGG - chr5.3:62459119-62459138 None:intergenic 35.0%
GGTGAAGCTATATTGAACTT+GGG - chr5.3:62459558-62459577 None:intergenic 35.0%
GTTCACAATCCACATTGAAA+AGG + chr5.3:62461997-62462016 MS.gene009541:CDS 35.0%
TAAAGAATTTGTCCGCTTCA+AGG - chr5.3:62455538-62455557 None:intergenic 35.0%
TAACTCAACCCTTACAAAAC+CGG - chr5.3:62459993-62460012 None:intergenic 35.0%
TAGAAAACTTGGGATAACTC+AGG + chr5.3:62459065-62459084 MS.gene009541:CDS 35.0%
TCACAGTTCAATAGAGATCA+TGG - chr5.3:62458200-62458219 None:intergenic 35.0%
TCACTTCTCATGTCAATTCA+TGG + chr5.3:62459269-62459288 MS.gene009541:CDS 35.0%
TCATAGTTGCATGTAGAAAG+AGG - chr5.3:62458546-62458565 None:intergenic 35.0%
TCTTAACTTCAAGGACAACT+GGG + chr5.3:62456686-62456705 MS.gene009541:CDS 35.0%
TGAACTGTGATCCTTAACAT+TGG + chr5.3:62458210-62458229 MS.gene009541:intron 35.0%
TGAGTAAACCTCTCAAGATA+AGG - chr5.3:62458759-62458778 None:intergenic 35.0%
TGTCACAATTAGCAGATAAC+TGG + chr5.3:62456267-62456286 MS.gene009541:intron 35.0%
TTACACAGATGGAAATTTGG+TGG + chr5.3:62459029-62459048 MS.gene009541:CDS 35.0%
TTACATATTGGACCAAGTCA+AGG + chr5.3:62458429-62458448 MS.gene009541:CDS 35.0%
TTATCTTGAGAGGTTTACTC+AGG + chr5.3:62458758-62458777 MS.gene009541:CDS 35.0%
TTCCATTAGGTCCAAAATCT+TGG - chr5.3:62458983-62459002 None:intergenic 35.0%
TTCTTAACTTCAAGGACAAC+TGG + chr5.3:62456685-62456704 MS.gene009541:CDS 35.0%
TTGATTACTCAATGTCTGGT+GGG - chr5.3:62455877-62455896 None:intergenic 35.0%
TTGCTAAGTACCTAGAAAAG+GGG + chr5.3:62455613-62455632 MS.gene009541:CDS 35.0%
TTGTGATACGTTAATGTCAC+AGG + chr5.3:62461374-62461393 MS.gene009541:intron 35.0%
TTTATAAAAGACCGCTTGCT+AGG + chr5.3:62456331-62456350 MS.gene009541:intron 35.0%
TTTCCTTCTTACCAACACTT+TGG + chr5.3:62458934-62458953 MS.gene009541:intron 35.0%
TTTGATTACTCAATGTCTGG+TGG - chr5.3:62455878-62455897 None:intergenic 35.0%
! AAAGGGTGTATGACCAAAAA+TGG + chr5.3:62456112-62456131 MS.gene009541:CDS 35.0%
! AACCAAGATTTTGGACCTAA+TGG + chr5.3:62458978-62458997 MS.gene009541:CDS 35.0%
! AAGATTTTGGACCTAATGGA+AGG + chr5.3:62458982-62459001 MS.gene009541:CDS 35.0%
! AATGCATTTGAAGCAGACTT+TGG + chr5.3:62456589-62456608 MS.gene009541:CDS 35.0%
! ACTTTTGCTACTAATCAAGG+AGG + chr5.3:62460532-62460551 MS.gene009541:CDS 35.0%
! AGATTTTGGACCTAATGGAA+GGG + chr5.3:62458983-62459002 MS.gene009541:CDS 35.0%
! CACTTGTTGCCAAAAATAAC+AGG + chr5.3:62458402-62458421 MS.gene009541:intron 35.0%
! CCAACTTTTGCTACTAATCA+AGG + chr5.3:62460529-62460548 MS.gene009541:CDS 35.0%
! CCACTTATAAACGCATTTTC+AGG - chr5.3:62459948-62459967 None:intergenic 35.0%
! CGCTGCAAACTTTTCTATTA+CGG + chr5.3:62458837-62458856 MS.gene009541:intron 35.0%
! CTTGAATTTGAGGTAATCTG+TGG - chr5.3:62456091-62456110 None:intergenic 35.0%
! GTTTCGGTATAAAGTGTCAT+AGG + chr5.3:62461548-62461567 MS.gene009541:intron 35.0%
! TAGACAGTTTTGCATCTCAA+AGG - chr5.3:62461061-62461080 None:intergenic 35.0%
! TGAATTTGAGGTAATCTGTG+GGG - chr5.3:62456089-62456108 None:intergenic 35.0%
! TTTTGCAGCAAATCTAGACT+TGG + chr5.3:62459459-62459478 MS.gene009541:intron 35.0%
!! ATAATTGTTGATGGTGTCTC+AGG + chr5.3:62460565-62460584 MS.gene009541:CDS 35.0%
!! CCATCAACAATTATTTCTGC+TGG - chr5.3:62460559-62460578 None:intergenic 35.0%
!! CTTCCTTTCAGGTTATTACT+TGG + chr5.3:62462092-62462111 MS.gene009541:intron 35.0%
!! CTTTACAAACCGGTTTTGTA+AGG + chr5.3:62459981-62460000 MS.gene009541:intron 35.0%
!! GACTTTGGAGCATTTGATAT+TGG + chr5.3:62456604-62456623 MS.gene009541:CDS 35.0%
!! TTTGTTAGCTTGCTTCCAAA+AGG - chr5.3:62461202-62461221 None:intergenic 35.0%
!!! ATTTTCAGGTTAAAGGAGTG+GGG + chr5.3:62457902-62457921 MS.gene009541:intron 35.0%
!!! TATGTTTTGGAGGGAAATCT+TGG + chr5.3:62455708-62455727 MS.gene009541:CDS 35.0%
!!! TTTTTTTTAAGTCGCGGTTG+AGG - chr5.3:62457105-62457124 None:intergenic 35.0%
AAATTCTTGTGGTGAGTCTC+AGG + chr5.3:62458509-62458528 MS.gene009541:intron 40.0%
AACAAAAGCTCCCTTTGTGT+CGG - chr5.3:62460449-62460468 None:intergenic 40.0%
AAGAGGAGATCTTCAATAGC+AGG - chr5.3:62459645-62459664 None:intergenic 40.0%
AATGGTATGGCAAGAACAAG+CGG + chr5.3:62460233-62460252 MS.gene009541:CDS 40.0%
ACACCCTTTCCTTGAATTTG+AGG - chr5.3:62456101-62456120 None:intergenic 40.0%
AGACTCACCACAAGAATTTG+AGG - chr5.3:62458508-62458527 None:intergenic 40.0%
AGAGGAGATCTTCAATAGCA+GGG - chr5.3:62459644-62459663 None:intergenic 40.0%
ATTGCAAAGGCTACATATGG+TGG - chr5.3:62455997-62456016 None:intergenic 40.0%
CAAACCTTCCAGCAATTTCT+TGG - chr5.3:62459344-62459363 None:intergenic 40.0%
CAAAGATCTATGCAAGGAGA+TGG - chr5.3:62456362-62456381 None:intergenic 40.0%
CAACCAACTCTCAAACAACA+AGG + chr5.3:62461447-62461466 MS.gene009541:CDS 40.0%
CAGACTGATAGATATCGCAA+CGG + chr5.3:62460403-62460422 MS.gene009541:CDS 40.0%
CATACCAAGAAATTGCTGGA+AGG + chr5.3:62459337-62459356 MS.gene009541:CDS 40.0%
CCAAATGCTTCATACAAAGC+AGG - chr5.3:62460475-62460494 None:intergenic 40.0%
CCATACACAGACTTTGACAA+TGG + chr5.3:62461733-62461752 MS.gene009541:intron 40.0%
CCATTGTCAAAGTCTGTGTA+TGG - chr5.3:62461736-62461755 None:intergenic 40.0%
CTCAACCCTTACAATCTTAC+GGG - chr5.3:62459797-62459816 None:intergenic 40.0%
CTTGATTCATCTCCATTGAG+AGG - chr5.3:62460604-62460623 None:intergenic 40.0%
GAGGTACAAAGATCTATGCA+AGG - chr5.3:62456368-62456387 None:intergenic 40.0%
GATTGCAGCGCATAAATGAA+TGG + chr5.3:62460695-62460714 MS.gene009541:CDS 40.0%
GCTCCAAGTAATAACCTGAA+AGG - chr5.3:62462098-62462117 None:intergenic 40.0%
GGAGAGAATGAAGTGTAATG+CGG + chr5.3:62458231-62458250 MS.gene009541:intron 40.0%
GTAGTGATCTTCTCAGTTCA+TGG + chr5.3:62458055-62458074 MS.gene009541:CDS 40.0%
GTCATTGAAGCAATGAACTG+TGG + chr5.3:62460502-62460521 MS.gene009541:CDS 40.0%
TACTATCACTGATCCTCATG+TGG - chr5.3:62456474-62456493 None:intergenic 40.0%
TAGATACTTTGATCAGCACC+AGG - chr5.3:62459579-62459598 None:intergenic 40.0%
TCAACCCTTACAATCTTACG+GGG - chr5.3:62459796-62459815 None:intergenic 40.0%
TCCCAGAAACAACTCTACAT+AGG - chr5.3:62459521-62459540 None:intergenic 40.0%
TGATTACTCAATGTCTGGTG+GGG - chr5.3:62455876-62455895 None:intergenic 40.0%
TGCTAATTGTGACACAGAGT+TGG - chr5.3:62456261-62456280 None:intergenic 40.0%
TGCTGCAAACCAAGAAGAAA+AGG - chr5.3:62461971-62461990 None:intergenic 40.0%
TGGATTTGGCCTAATTGCAA+AGG - chr5.3:62456010-62456029 None:intergenic 40.0%
TGTAAGGGTTGAGTTAGGTT+AGG + chr5.3:62459997-62460016 MS.gene009541:intron 40.0%
TGTCAAACACTAACACGTGT+CGG + chr5.3:62461825-62461844 MS.gene009541:intron 40.0%
TGTTTGTACCATACCACATG+AGG + chr5.3:62456458-62456477 MS.gene009541:intron 40.0%
TTCAAGGACAACTGGGAAAT+TGG + chr5.3:62456693-62456712 MS.gene009541:CDS 40.0%
TTCATTTATGCGCTGCAATC+CGG - chr5.3:62460695-62460714 None:intergenic 40.0%
TTCCACATTGATCCTCTCAA+TGG + chr5.3:62460589-62460608 MS.gene009541:CDS 40.0%
TTGGTGAACCTTGTCATAGT+CGG + chr5.3:62460265-62460284 MS.gene009541:CDS 40.0%
TTTGCAATTAGGCCAAATCC+AGG + chr5.3:62456009-62456028 MS.gene009541:CDS 40.0%
! AGGCCTTATCTAATCCAATG+TGG - chr5.3:62459928-62459947 None:intergenic 40.0%
! ATTTCTAGGTTCACTGGATC+CGG - chr5.3:62458004-62458023 None:intergenic 40.0%
! CATTGATTGGTTCAAACTCC+TGG - chr5.3:62458650-62458669 None:intergenic 40.0%
! CCTGCTTTGTATGAAGCATT+TGG + chr5.3:62460472-62460491 MS.gene009541:CDS 40.0%
! CTACTTGTTAGTTGTGACCA+GGG + chr5.3:62457175-62457194 MS.gene009541:intron 40.0%
! GAATTTGAGGTAATCTGTGG+GGG - chr5.3:62456088-62456107 None:intergenic 40.0%
! GGCCTTATCTAATCCAATGT+GGG - chr5.3:62459927-62459946 None:intergenic 40.0%
! GTCCCACATTGGATTAGATA+AGG + chr5.3:62459922-62459941 MS.gene009541:intron 40.0%
! GTGCCTTTTCATACAGAGAA+AGG + chr5.3:62458696-62458715 MS.gene009541:CDS 40.0%
! TAACTGGTCTCTTAAGCATG+TGG + chr5.3:62456283-62456302 MS.gene009541:intron 40.0%
! TACTTGTTAGTTGTGACCAG+GGG + chr5.3:62457176-62457195 MS.gene009541:intron 40.0%
! TCTACTTGTTAGTTGTGACC+AGG + chr5.3:62457174-62457193 MS.gene009541:intron 40.0%
!! ACGTAGAATGTGAGAGTGTT+TGG - chr5.3:62458676-62458695 None:intergenic 40.0%
!! ACTTAAGCGGGTTAGTTGAA+TGG + chr5.3:62460215-62460234 MS.gene009541:CDS 40.0%
!! AGATTTCTAGTCTTCACGTG+AGG + chr5.3:62459891-62459910 MS.gene009541:intron 40.0%
!! CAAAACCGGTTTGTAAAGTG+AGG - chr5.3:62459979-62459998 None:intergenic 40.0%
!! CAACCAAAGTGTTGGTAAGA+AGG - chr5.3:62458940-62458959 None:intergenic 40.0%
!! GATTTCTAGTCTTCACGTGA+GGG + chr5.3:62459892-62459911 MS.gene009541:intron 40.0%
!! GCCTATGTAGAGTTGTTTCT+GGG + chr5.3:62459517-62459536 MS.gene009541:CDS 40.0%
!! GGTTTTGTAAGGGTTGAGTT+AGG + chr5.3:62459992-62460011 MS.gene009541:intron 40.0%
!!! TGTCTTTTGGAATTGCTGAG+AGG - chr5.3:62456948-62456967 None:intergenic 40.0%
!!! TTTTCAGGTTAAAGGAGTGG+GGG + chr5.3:62457903-62457922 MS.gene009541:intron 40.0%
AAAGGATGGGGAGATAATGC+AGG + chr5.3:62457932-62457951 MS.gene009541:CDS 45.0%
AATCTGTAGCATCACCTGAG+TGG - chr5.3:62459876-62459895 None:intergenic 45.0%
AGAAAGGAATCTTGCGCCAA+TGG + chr5.3:62458712-62458731 MS.gene009541:CDS 45.0%
AGATAATGCAGGAAGGGTGA+AGG + chr5.3:62457943-62457962 MS.gene009541:CDS 45.0%
AGTACCTAGAAAAGGGGAGA+AGG + chr5.3:62455619-62455638 MS.gene009541:CDS 45.0%
ATCCTCCCCGTAAGATTGTA+AGG + chr5.3:62459788-62459807 MS.gene009541:intron 45.0%
ATGGGGAGATAATGCAGGAA+GGG + chr5.3:62457937-62457956 MS.gene009541:CDS 45.0%
ATTGGACCAAGTCAAGGCTT+TGG + chr5.3:62458435-62458454 MS.gene009541:CDS 45.0%
CACTTAGTTCCTCTAGCATC+AGG - chr5.3:62458624-62458643 None:intergenic 45.0%
CATCAGAAAGCAAGATGTCG+CGG + chr5.3:62458275-62458294 MS.gene009541:intron 45.0%
CATGCTGCATTTACTCTTCC+AGG + chr5.3:62459495-62459514 MS.gene009541:CDS 45.0%
CGATTTAGGTCGCAACATCA+AGG - chr5.3:62457129-62457148 None:intergenic 45.0%
CTACTCTGCTTCAATGCATC+AGG - chr5.3:62455573-62455592 None:intergenic 45.0%
CTCCAACACATACCTTGAAG+CGG + chr5.3:62455523-62455542 MS.gene009541:CDS 45.0%
CTCCATTGAGAGGATCAATG+TGG - chr5.3:62460594-62460613 None:intergenic 45.0%
CTCTCAAACAACAAGGCTCT+AGG + chr5.3:62461454-62461473 MS.gene009541:CDS 45.0%
CTGGAAGAGTAAATGCAGCA+TGG - chr5.3:62459497-62459516 None:intergenic 45.0%
CTTCTTCCAAAGCCTTGACT+TGG - chr5.3:62458444-62458463 None:intergenic 45.0%
GAAACAACTCTACATAGGCC+TGG - chr5.3:62459516-62459535 None:intergenic 45.0%
GAAAGGAATCTTGCGCCAAT+GGG + chr5.3:62458713-62458732 MS.gene009541:CDS 45.0%
GAACAAGCGGCTAAGAAACT+TGG + chr5.3:62460246-62460265 MS.gene009541:CDS 45.0%
GAGAAATCTCGAGGAGACAA+AGG - chr5.3:62460726-62460745 None:intergenic 45.0%
GATAAATGACACGCTGAGCT+CGG + chr5.3:62456882-62456901 MS.gene009541:CDS 45.0%
GATGAACCTCCAAAACCAGT+TGG + chr5.3:62461420-62461439 MS.gene009541:CDS 45.0%
GCAGTCCTCACTTTACAAAC+CGG + chr5.3:62459971-62459990 MS.gene009541:intron 45.0%
GGAGGTTCATCACTTGGAAT+AGG - chr5.3:62461411-62461430 None:intergenic 45.0%
GGAGTATGTACGTGTCAACT+CGG + chr5.3:62456038-62456057 MS.gene009541:CDS 45.0%
GGGTCGTATAAAAAGGGACA+AGG - chr5.3:62460748-62460767 None:intergenic 45.0%
GTGGATATCTAGCAGAGAAG+AGG + chr5.3:62460149-62460168 MS.gene009541:intron 45.0%
TCACTGATCCTCATGTGGTA+TGG - chr5.3:62456469-62456488 None:intergenic 45.0%
TCATGAGACTCTGCAAGTGT+AGG - chr5.3:62456864-62456883 None:intergenic 45.0%
TCCTCCCCGTAAGATTGTAA+GGG + chr5.3:62459789-62459808 MS.gene009541:intron 45.0%
TGTGGTGCATATGAACTTGC+AGG + chr5.3:62455957-62455976 MS.gene009541:intron 45.0%
TTTGGGCAAGCAGATGTTCT+TGG + chr5.3:62458082-62458101 MS.gene009541:CDS 45.0%
! CAATGTGGATTGTGAACGTC+TGG - chr5.3:62461994-62462013 None:intergenic 45.0%
! GGATGCAGCAACCAAGATTT+TGG + chr5.3:62458969-62458988 MS.gene009541:intron 45.0%
! GGCAAAAGCACAGACTATAG+TGG + chr5.3:62456714-62456733 MS.gene009541:CDS 45.0%
! GGCCTATGTAGAGTTGTTTC+TGG + chr5.3:62459516-62459535 MS.gene009541:CDS 45.0%
! GGGAAGCCAGATCTTGTTAT+TGG + chr5.3:62459003-62459022 MS.gene009541:CDS 45.0%
! TGATCCTTCTCCCCTTTTCT+AGG - chr5.3:62455626-62455645 None:intergenic 45.0%
! TGATTGGTTCAAACTCCTGG+TGG - chr5.3:62458647-62458666 None:intergenic 45.0%
! TGGGGAACACTTACACCTTT+TGG + chr5.3:62461184-62461203 MS.gene009541:CDS 45.0%
!! AGCGGGTTAGTTGAATGGTA+TGG + chr5.3:62460220-62460239 MS.gene009541:CDS 45.0%
!! AGGTTGATACCTGATGCTAG+AGG + chr5.3:62458612-62458631 MS.gene009541:CDS 45.0%
!! ATCAGAAGTACTCCAAGCTC+CGG + chr5.3:62457982-62458001 MS.gene009541:CDS 45.0%
!! GAGCCTTGTTGTTTGAGAGT+TGG - chr5.3:62461453-62461472 None:intergenic 45.0%
!!! GGTTTTGGAGGTTCATCACT+TGG - chr5.3:62461417-62461436 None:intergenic 45.0%
AAGATCCAATTGGGCCACTC+AGG + chr5.3:62459859-62459878 MS.gene009541:intron 50.0%
AAGGAGTGGGGGTTTGAGAA+AGG + chr5.3:62457914-62457933 MS.gene009541:CDS 50.0%
AATGTCTGGTGGGGATCAAG+GGG - chr5.3:62455867-62455886 None:intergenic 50.0%
ACCCTTACAATCTTACGGGG+AGG - chr5.3:62459793-62459812 None:intergenic 50.0%
AGACTACCCCTCCCATATGA+AGG - chr5.3:62457208-62457227 None:intergenic 50.0%
AGGGACAAGGAGAAATCTCG+AGG - chr5.3:62460735-62460754 None:intergenic 50.0%
AGTGGGGGTTTGAGAAAGGA+TGG + chr5.3:62457918-62457937 MS.gene009541:CDS 50.0%
CAATGTCTGGTGGGGATCAA+GGG - chr5.3:62455868-62455887 None:intergenic 50.0%
CGATGCATTGCCGACACAAA+GGG + chr5.3:62460436-62460455 MS.gene009541:CDS 50.0%
GACTACCCCTCCCATATGAA+GGG - chr5.3:62457207-62457226 None:intergenic 50.0%
GATGGGGAGATAATGCAGGA+AGG + chr5.3:62457936-62457955 MS.gene009541:CDS 50.0%
GTATGTACGTGTCAACTCGG+AGG + chr5.3:62456041-62456060 MS.gene009541:CDS 50.0%
GTCCGCTTCAAGGTATGTGT+TGG - chr5.3:62455528-62455547 None:intergenic 50.0%
GTGAACCTTGTCATAGTCGG+TGG + chr5.3:62460268-62460287 MS.gene009541:CDS 50.0%
GTGGGGGTTTGAGAAAGGAT+GGG + chr5.3:62457919-62457938 MS.gene009541:CDS 50.0%
TACTCCCAGACTCCTGGATT+TGG - chr5.3:62456024-62456043 None:intergenic 50.0%
TAGAGGAACTAAGTGCCACC+AGG + chr5.3:62458629-62458648 MS.gene009541:CDS 50.0%
TAGGCCAAATCCAGGAGTCT+GGG + chr5.3:62456017-62456036 MS.gene009541:CDS 50.0%
TCAATGTCTGGTGGGGATCA+AGG - chr5.3:62455869-62455888 None:intergenic 50.0%
TCATATGGGAGGGGTAGTCT+TGG + chr5.3:62457208-62457227 MS.gene009541:intron 50.0%
TCGATGCATTGCCGACACAA+AGG + chr5.3:62460435-62460454 MS.gene009541:CDS 50.0%
TGGGGGTTTGAGAAAGGATG+GGG + chr5.3:62457920-62457939 MS.gene009541:CDS 50.0%
TGTCGAAGCGAGAAACCCAT+TGG - chr5.3:62458731-62458750 None:intergenic 50.0%
TGTCTCTGCGACTGCAACTA+AGG - chr5.3:62458257-62458276 None:intergenic 50.0%
TTAGGCCAAATCCAGGAGTC+TGG + chr5.3:62456016-62456035 MS.gene009541:CDS 50.0%
! AAAAGACCGCTTGCTAGGAG+AGG + chr5.3:62456336-62456355 MS.gene009541:intron 50.0%
! AGAAGCCACCGACTATGACA+AGG - chr5.3:62460276-62460295 None:intergenic 50.0%
! AGAGTTGGTTGCTTGCCAAC+TGG - chr5.3:62461438-62461457 None:intergenic 50.0%
! GATCTGGCTTCCCTTCCATT+AGG - chr5.3:62458996-62459015 None:intergenic 50.0%
!! GGTTGCTTGCCAACTGGTTT+TGG - chr5.3:62461432-62461451 None:intergenic 50.0%
!!! TGCTTGCCAACTGGTTTTGG+AGG - chr5.3:62461429-62461448 None:intergenic 50.0%
!!! TTTTTTGCAAGCTTCGCCGC+TGG + chr5.3:62457857-62457876 MS.gene009541:intron 50.0%
AGATGGCCTCTCCTAGCAAG+CGG - chr5.3:62456345-62456364 None:intergenic 55.0%
AGGGTGTGTGAGTCCCACAT+TGG + chr5.3:62459911-62459930 MS.gene009541:intron 55.0%
ATGGCCTGCGAGCACGATTT+AGG - chr5.3:62457143-62457162 None:intergenic 55.0%
CATCACCTGAGTGGCCCAAT+TGG - chr5.3:62459867-62459886 None:intergenic 55.0%
CGTACATACTCCCAGACTCC+TGG - chr5.3:62456030-62456049 None:intergenic 55.0%
CGTAGCCCTTCATATGGGAG+GGG + chr5.3:62457199-62457218 MS.gene009541:intron 55.0%
CTCGGCTGCAAAGCTTCAGA+TGG + chr5.3:62456900-62456919 MS.gene009541:CDS 55.0%
GCGTAGCCCTTCATATGGGA+GGG + chr5.3:62457198-62457217 MS.gene009541:intron 55.0%
GGCATTAGGGTCACAACCAG+CGG - chr5.3:62457876-62457895 None:intergenic 55.0%
GGGTGATAGCCTCAACAGAG+AGG - chr5.3:62456068-62456087 None:intergenic 55.0%
TGGAACGTGATTTCTGCGGC+CGG + chr5.3:62460673-62460692 MS.gene009541:CDS 55.0%
TTTACCTGGCCACCAGTGTC+TGG - chr5.3:62458112-62458131 None:intergenic 55.0%
! AGGGGCGTAGCCCTTCATAT+GGG + chr5.3:62457194-62457213 MS.gene009541:intron 55.0%
!! GTTCTTGGCTTGCCAGACAC+TGG + chr5.3:62458097-62458116 MS.gene009541:CDS 55.0%
CATATGAAGGGCTACGCCCC+TGG - chr5.3:62457195-62457214 None:intergenic 60.0%
CTCGGAGGACCTCTCTGTTG+AGG + chr5.3:62456056-62456075 MS.gene009541:CDS 60.0%
GCGACCTAAATCGTGCTCGC+AGG + chr5.3:62457136-62457155 MS.gene009541:intron 60.0%
GGCGTAGCCCTTCATATGGG+AGG + chr5.3:62457197-62457216 MS.gene009541:intron 60.0%
GGTTCACTGGATCCGGAGCT+TGG - chr5.3:62457997-62458016 None:intergenic 60.0%
! CAGGGGCGTAGCCCTTCATA+TGG + chr5.3:62457193-62457212 MS.gene009541:intron 60.0%
!! CTTGGCTTGCCAGACACTGG+TGG + chr5.3:62458100-62458119 MS.gene009541:CDS 60.0%
CTTGCCAGACACTGGTGGCC+AGG + chr5.3:62458105-62458124 MS.gene009541:CDS 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 62455519 62462121 62455519 ID=MS.gene009541
chr5.3 mRNA 62455519 62462121 62455519 ID=MS.gene009541.t1;Parent=MS.gene009541
chr5.3 exon 62455519 62455752 62455519 ID=MS.gene009541.t1.exon1;Parent=MS.gene009541.t1
chr5.3 CDS 62455519 62455752 62455519 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62455979 62456133 62455979 ID=MS.gene009541.t1.exon2;Parent=MS.gene009541.t1
chr5.3 CDS 62455979 62456133 62455979 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62456576 62456768 62456576 ID=MS.gene009541.t1.exon3;Parent=MS.gene009541.t1
chr5.3 CDS 62456576 62456768 62456576 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62456874 62456992 62456874 ID=MS.gene009541.t1.exon4;Parent=MS.gene009541.t1
chr5.3 CDS 62456874 62456992 62456874 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62457910 62458126 62457910 ID=MS.gene009541.t1.exon5;Parent=MS.gene009541.t1
chr5.3 CDS 62457910 62458126 62457910 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62458424 62458519 62458424 ID=MS.gene009541.t1.exon6;Parent=MS.gene009541.t1
chr5.3 CDS 62458424 62458519 62458424 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62458606 62458779 62458606 ID=MS.gene009541.t1.exon7;Parent=MS.gene009541.t1
chr5.3 CDS 62458606 62458779 62458606 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62458970 62459086 62458970 ID=MS.gene009541.t1.exon8;Parent=MS.gene009541.t1
chr5.3 CDS 62458970 62459086 62458970 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62459192 62459358 62459192 ID=MS.gene009541.t1.exon9;Parent=MS.gene009541.t1
chr5.3 CDS 62459192 62459358 62459192 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62459467 62459691 62459467 ID=MS.gene009541.t1.exon10;Parent=MS.gene009541.t1
chr5.3 CDS 62459467 62459691 62459467 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62460150 62460716 62460150 ID=MS.gene009541.t1.exon11;Parent=MS.gene009541.t1
chr5.3 CDS 62460150 62460716 62460150 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62461146 62461284 62461146 ID=MS.gene009541.t1.exon12;Parent=MS.gene009541.t1
chr5.3 CDS 62461146 62461284 62461146 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62461396 62461475 62461396 ID=MS.gene009541.t1.exon13;Parent=MS.gene009541.t1
chr5.3 CDS 62461396 62461475 62461396 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62461989 62462018 62461989 ID=MS.gene009541.t1.exon14;Parent=MS.gene009541.t1
chr5.3 CDS 62461989 62462018 62461989 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
chr5.3 exon 62462103 62462121 62462103 ID=MS.gene009541.t1.exon15;Parent=MS.gene009541.t1
chr5.3 CDS 62462103 62462121 62462103 ID=cds.MS.gene009541.t1;Parent=MS.gene009541.t1
Gene Sequence

>MS.gene009541

ATGGCTCCAACACATACCTTGAAGCGGACAAATTCTTTAGCTGATAACATGCCTGATGCATTGAAGCAGAGTAGATACCATATGAAGAAGTGTTTTGCTAAGTACCTAGAAAAGGGGAGAAGGATCATGAAACTTCATGAATTAATGGAAGAAGTGGAACGAACTATAGATGATAAAAATGAAAGAAATTATGTTTTGGAGGGAAATCTTGGCTTTATATTGAGCTCTACACAGGTTCTTTTTATATTTTGTCTAATAGGTTTAATCACTCAAATCATAATTATTTTCTTTAAGATTCAAGCTCGAGTTTACTCAAACGATTCGTTCTTAATTGAACATCATAATCCCCTTGATCCCCACCAGACATTGAGTAATCAAAAACTTTGCTATAATTCACTTCATACATATGCAACAAAATATTTAGCCTTTGAATTTTAATGTGGTGCATATGAACTTGCAGGAAGCTGTTGTTGATCCACCATATGTAGCCTTTGCAATTAGGCCAAATCCAGGAGTCTGGGAGTATGTACGTGTCAACTCGGAGGACCTCTCTGTTGAGGCTATCACCCCCACAGATTACCTCAAATTCAAGGAAAGGGTGTATGACCAAAAATGGTATGTCATTTCTCTTCATTTTCTCATATTTAATTTGAAGTCTTGATATATTTCACTGTTTGAATATCTTATGTAAGGTTAAATGTCTATGTTAGAAAATATAGTATAAAGTAAATATGAATTACCAACTCTGTGTCACAATTAGCAGATAACTGGTCTCTTAAGCATGTGGTCATGAGTTTGATCTTTGACCGATGTTTATAAAAGACCGCTTGCTAGGAGAGGCCATCTCCTTGCATAGATCTTTGTACCTCGAAAGATTAGTTAGTAGCTTTTGAAATGTGAGATAAAAAGCACATTATTTTGAATGTGTAAATCTAGAGTTGTTTGTACCATACCACATGAGGATCAGTGATAGTATCTAATTATCTATTTCAATTCCTACCAAAAAGATAGATTCACTTAACTTTGCTTTTGATGCTTAACATTTTCTATATTGTAGGGCAAATGATGAAAATGCATTTGAAGCAGACTTTGGAGCATTTGATATTGGGATTCCTAAATTAACCTTGTCTTCTTCAATTGGAAATGGACTACACTTTGTTTCAAAGTTCTTAACTTCAAGGACAACTGGGAAATTGGCAAAAGCACAGACTATAGTGGACTACTTGTTGAAACTAAATCATCATGGAGAAGTAAGTGGAAGAAACATATTAGATTAAATTCATATGCATTATACCAACAACAGTTACATATTCTTTTCAATATTAATTTTGCTTTTTTGTAACCTACACTTGCAGAGTCTCATGATAAATGACACGCTGAGCTCGGCTGCAAAGCTTCAGATGGCATTAATAGTTGCTGATGTTTTCCTCTCAGCAATTCCAAAAGACACTTCATATCAAAAATTTGAGCTAAGGTAAAAAGTTTATTATTTTTCTATTAAAGAGACCAACTATGTTTATAATCTTGGTTGCATCACAATCCTTGATATTACGAAGAATTATAGTTATATACTTCTGATATGGCCTCAACCGCGACTTAAAAAAAAACCTTGATGTTGCGACCTAAATCGTGCTCGCAGGCCATTTTTTTTAAACTCTACTTGTTAGTTGTGACCAGGGGCGTAGCCCTTCATATGGGAGGGGTAGTCTTGGCTACCCCAAAAAAAATATTATTCTTGAAGTAGTCGGTATGTATTTATATCCGACTACCTCAAATAATAAACATTGAGCTACCCCAAACAAGTTTAATTGCAAACATTAGCACAAATAATATAGTAAAAAAAATTACTACAAGATTGATAGATTTATTTGTATTGGTTTGATACTTTCGGTCTCAATAACAATAATAGAGAAACCTTTTTCAACAATAAAAATTATCAAGACAATAGTCATAATTAAATGGACAACGAGTTTTTGGCAAATAATCTATTTATTTACATTTAAAAAGACGTTATTAATCTATTATTAAACAGACAATTATTGATGAAATTGGGTTTTTGAAACGCATTTTGCCCAACATTTTTAAATGGCGATTTTTATGTTAAGTTCCTAAGATTTGTTAATTTTAGTCCTTAATTTTTTGTTAGAGATTAAATTCAAGACTGAAAACACTTTATTTTGTAGAATTTTAAAAAACTGAGACAAAAATTGAACAATTTTTATAAGGACTAAACCTAAAAAAATGAAATTTATGGGACTAAAAATAGATTTTATCCTTAAATTTAATATGTTTGTTTTAAAAAAAAAAAATTCTTCTTTATAGTTGGCTCCTGCATAAATTTTTTGCAAGCTTCGCCGCTGGTTGTGACCCTAATGCCAATTTTATTTTCAGGTTAAAGGAGTGGGGGTTTGAGAAAGGATGGGGAGATAATGCAGGAAGGGTGAAGGAGACGATGAGAACTTTATCAGAAGTACTCCAAGCTCCGGATCCAGTGAACCTAGAAATATTTTTCAGCAGAATTCCAACAATATTCAAAGTAGTGATCTTCTCAGTTCATGGTTATTTTGGGCAAGCAGATGTTCTTGGCTTGCCAGACACTGGTGGCCAGGTAAAATTTCTACCATAAGGAACATTAATTTTAATTATAAGTAGTAAGGTTTTAAATCACGGTCGATATGCCATGATCTCTATTGAACTGTGATCCTTAACATTGGAGAGAATGAAGTGTAATGCGGCCTTAGTTGCAGTCGCAGAGACATCAGAAAGCAAGATGTCGCGGCCCAAATCGTAGATGCAATTCTTTCTTAAATCTTGTCACTACTCAAATTGGAAAATAAAAACTAAAGTATTAAAAGTTGGCTCAAAATTTGTTTTCTTTTCTAACACTTGTTGCCAAAAATAACAGGTTGTTTACATATTGGACCAAGTCAAGGCTTTGGAAGAAGAGTTAATTCTAAGAATTAAGCAACAAGGGTTAAATTATAAACCTCAAATTCTTGTGGTGAGTCTCAGGCAAACATATCACCTCTTTCTACATGCAACTATGAACTTCGTAAAATCATGTGAATATACTCTTAACTTTGACAGGTAACAAGGTTGATACCTGATGCTAGAGGAACTAAGTGCCACCAGGAGTTTGAACCAATCAATGATACCAAACACTCTCACATTCTACGTGTGCCTTTTCATACAGAGAAAGGAATCTTGCGCCAATGGGTTTCTCGCTTCGACATTTACCCTTATCTTGAGAGGTTTACTCAGGCATGTACACACGCTTCACGATTTTTTACCTTGTACTATGGTTTTAAGTTGCAGTTACGCTGCAAACTTTTCTATTACGGTAAAAAGCGGATGCAATCGCAGCTGTTGACCGCAGTTTAGAACTATGTTTTGTACCTTTTTCGCTCTTATGAACTTTCCTTCTTACCAACACTTTGGTTGATATTAATAGGATGCAGCAACCAAGATTTTGGACCTAATGGAAGGGAAGCCAGATCTTGTTATTGGAAATTACACAGATGGAAATTTGGTGGCATCATTAATGGCTAGAAAACTTGGGATAACTCAGGTTACTAAAACATACCTTTATTTAGTTTTCCTTTCAATATTTTTGTGGCTGCAAAGATGTGTTATTTATCTCATGTACCAATTCCTTATTGTGATTGAAAATTAGGCAACTATAGCACATGCTTTAGAGAAAACAAAGTATGAAGACTCAGATGTTAAGTGGAAAGAGTTAGATCCTAAATATCACTTCTCATGTCAATTCATGGCTGATACAGTTGCAATGAATTCATCCGATTTTATCATAACCAGTACATACCAAGAAATTGCTGGAAGGTTTGTTAAAATAGCCTTTCATTTATTAATATTTGTTTAATTGAGAAGAAATTTAAAAATAGTACACAAAAATGAGAACTGAGTTTTGAAAGTTAATTTTTTTTGCAGCAAATCTAGACTTGGACAGTATGAAAGCCATGCTGCATTTACTCTTCCAGGCCTATGTAGAGTTGTTTCTGGGATAAATGTGTTTGATCCCAAGTTCAATATAGCTTCACCTGGTGCTGATCAAAGTATCTATTTCCCTTACACAGAAAAAGACAAAAGACACTCTCAATTTCACCCTGCTATTGAAGATCTCCTCTTTAACAAAGTAGATAACAACGAGCATATGTAAGTGATTTTGTTCCCACACTTGCACATTAAACATTTCTGTTAAAAGACTCATTTGAGGATATAAGGTAGGAAATGTGTTTATAAGCTATGACAATCCTCCCCGTAAGATTGTAAGGGTTGAGTTACGTCCAACTCAAATTCTAAGATAGTATCAGAGTCTACTTAAGATCCAATTGGGCCACTCAGGTGATGCTACAGATTTCTAGTCTTCACGTGAGGGTGTGTGAGTCCCACATTGGATTAGATAAGGCCTGAAAATGCGTTTATAAGTGGTGGGCAGTCCTCACTTTACAAACCGGTTTTGTAAGGGTTGAGTTAGGTTAGGTCAAGCCTAAATTTTAAAACTTTCAGTTATGAAATTACATTCTTCCAAATGATTGATATTCGCTTTTCAGTTATGAAATTACATTCTTCCAAATGATTGATATTCGCTTTTGAAATTATTATGGAAACAGTGGATATCTAGCAGAGAAGAGGAAACCAATAATCTTCTCAATGGCAAGGCTTGATGTTGTGAAGAACTTAAGCGGGTTAGTTGAATGGTATGGCAAGAACAAGCGGCTAAGAAACTTGGTGAACCTTGTCATAGTCGGTGGCTTCTTTGACCCTTCAAAATCAAAAGACAGAGAGGAAATGGCAGAAATAAAAAAGATGCATGATTTAATTGAAAAATATCAACTAAAGGGACAATTCAGATGGATTGCTGCGCAGACTGATAGATATCGCAACGGAGAGCTCTATCGATGCATTGCCGACACAAAGGGAGCTTTTGTTCAACCTGCTTTGTATGAAGCATTTGGTTTAACTGTCATTGAAGCAATGAACTGTGGCTTGCCAACTTTTGCTACTAATCAAGGAGGTCCAGCAGAAATAATTGTTGATGGTGTCTCAGGATTCCACATTGATCCTCTCAATGGAGATGAATCAAGCAACAAAATTGCCGATTTCTTTGAAAAATGCAAAGTAGATCCATCATATTGGAACGTGATTTCTGCGGCCGGATTGCAGCGCATAAATGAATGGTACTACCTTTGTCTCCTCGAGATTTCTCCTTGTCCCTTTTTATACGACCCTTTAATTTTTTTACTGCTTAATTATTTCTTTATCGACATAGCCCTAATTATGTTACATCTTTTTTTGTAATCTTAAATAAATACTATGATAGAAACATAAACTAATTTTATTACTTAAAAGATAAACTTGTAAAACAACTTTCAACAAATTTACTACTAATACCAACTTTTTTAATTCTTGTGATTTAATCAACACTGTCCTATATTTAAGGACATAGGTAGTAACCAACAAGCCATATAATTTTCTTAGCTTCAAACTAGTGCATTTTTTCTATATGTTAAGAGTTACGCCTTTGAGATGCAAAACTGTCTACTCTTTTATGTGCATCATCAGCAAGAAAATTAATTTTAAGCATGTTCATGTCTTTTTTCTTGTAGCTATACTTGGAAGATCTATGCAAACAAGTTGGTAAATATGGGGAACACTTACACCTTTTGGAAGCAAGCTAACAAAGAGCAAAATGAGGCAAAACAAAGATACATCCATATGTTCTATAATTTCTTATTCAAGAATTTGGTTAGTCAATGTTTGGTTTTTTATAAACATTAACAAATAACCAATTATTGCATAGTGAGTTTTAGAATAAAGATTATACGTTATAACACTTGTGATACGTTAATGTCACAGGTTAAGAATGTACCTATTCCAAGTGATGAACCTCCAAAACCAGTTGGCAAGCAACCAACTCTCAAACAACAAGGCTCTAGGTATGTCACTCAAGCATTTTGTTTTAGAATTTTAGAGGCTCGGATCAATTTCATTACAAATAAGAAAATATTGTTTCGGTATAAAGTGTCATAGGAAGCATAATTATCTCATTTGAACTGAGAATAATCTCAACCTTTATATGTTAAATCATATCTTTGAAGATTAAAAAAATATTATTGACCAAATTAGACTATATACATTCGTTAGAGTCTTTTGCCTTATAAGATTTATGTGTCTCTGGCTATGAAGCAATGATCCATACACAGACTTTGACAATGGCATGTTACCGATAATAATGAGAGAAAAATGAAGTATTAAATGTGACCATATGTATGAATGTCAAGTCGGTGTCAAACACTAACACGTGTCGGTGTTAAATACATATTTAAGTTGGTCCGTAAATTCTTTCTATTTTTGTTAGCATATACCTTTGTGCAGTTAAGAAAATTGTTTACGATTTGATTTTTCATGCTAACATCTTTTTCTTTTTTCCTTTTCTTCTTGGTTTGCAGCACCAGACGTTCACAATCCACATTGAAAAGGTTAGATTTATTTATATAATCTTGGATAAGCTTATGATTTTAAGCTGTGTCACCTTACTAAAAAAAACACTTGCTTCCTTTCAGGTTATTACTTGGAGCTTAA
Protein sequence

>MS.gene009541.t1

MAPTHTLKRTNSLADNMPDALKQSRYHMKKCFAKYLEKGRRIMKLHELMEEVERTIDDKNERNYVLEGNLGFILSSTQEAVVDPPYVAFAIRPNPGVWEYVRVNSEDLSVEAITPTDYLKFKERVYDQKWANDENAFEADFGAFDIGIPKLTLSSSIGNGLHFVSKFLTSRTTGKLAKAQTIVDYLLKLNHHGESLMINDTLSSAAKLQMALIVADVFLSAIPKDTSYQKFELRLKEWGFEKGWGDNAGRVKETMRTLSEVLQAPDPVNLEIFFSRIPTIFKVVIFSVHGYFGQADVLGLPDTGGQVVYILDQVKALEEELILRIKQQGLNYKPQILVVTRLIPDARGTKCHQEFEPINDTKHSHILRVPFHTEKGILRQWVSRFDIYPYLERFTQDAATKILDLMEGKPDLVIGNYTDGNLVASLMARKLGITQATIAHALEKTKYEDSDVKWKELDPKYHFSCQFMADTVAMNSSDFIITSTYQEIAGSKSRLGQYESHAAFTLPGLCRVVSGINVFDPKFNIASPGADQSIYFPYTEKDKRHSQFHPAIEDLLFNKVDNNEHIGYLAEKRKPIIFSMARLDVVKNLSGLVEWYGKNKRLRNLVNLVIVGGFFDPSKSKDREEMAEIKKMHDLIEKYQLKGQFRWIAAQTDRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPLNGDESSNKIADFFEKCKVDPSYWNVISAAGLQRINECYTWKIYANKLVNMGNTYTFWKQANKEQNEAKQRYIHMFYNFLFKNLVKNVPIPSDEPPKPVGKQPTLKQQGSSTRRSQSTLKRLLLGA