Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009881.t1 | AES98591.2 | 93.7 | 558 | 34 | 1 | 1 | 557 | 1 | 558 | 3.40E-288 | 1000.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009881.t1 | Q84KJ3 | 69.9 | 429 | 128 | 1 | 65 | 492 | 88 | 516 | 9.1e-189 | 661.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009881.t1 | G7KE47 | 93.7 | 558 | 34 | 1 | 1 | 557 | 1 | 558 | 2.5e-288 | 1000.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030901 | MS.gene009881 | PPI |
| MS.gene27972 | MS.gene009881 | PPI |
| MS.gene53501 | MS.gene009881 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009881.t1 | MTR_5g070310 | 93.728 | 558 | 34 | 1 | 1 | 557 | 1 | 558 | 0.0 | 1014 |
| MS.gene009881.t1 | MTR_4g116900 | 25.246 | 305 | 193 | 13 | 165 | 465 | 161 | 434 | 2.88e-13 | 72.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009881.t1 | AT5G58760 | 70.784 | 510 | 139 | 4 | 5 | 509 | 6 | 510 | 0.0 | 745 |
| MS.gene009881.t1 | AT5G58760 | 74.515 | 412 | 105 | 0 | 98 | 509 | 1 | 412 | 0.0 | 670 |
| MS.gene009881.t1 | AT1G80710 | 25.000 | 344 | 206 | 14 | 165 | 492 | 209 | 516 | 1.12e-16 | 83.6 |
Find 129 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCAGTCTGCTTGGATTT+TGG | 0.092885 | 5.3:-55932069 | None:intergenic |
| CGTATATGGGATTCTATCTT+TGG | 0.201004 | 5.3:+55930916 | MS.gene009881:CDS |
| GGATTCTATCTTTGGTAATA+TGG | 0.203494 | 5.3:+55930924 | MS.gene009881:CDS |
| AGGACAATCGTCTTCGTATA+TGG | 0.237095 | 5.3:+55930902 | MS.gene009881:CDS |
| AACACCTGGAAAATGCTTTA+TGG | 0.242204 | 5.3:+55930152 | MS.gene009881:CDS |
| CAAAGAAAACAAGGTTTCAT+AGG | 0.255454 | 5.3:-55927474 | None:intergenic |
| CATGCCATCCATCAGGATTC+AGG | 0.269004 | 5.3:-55929971 | None:intergenic |
| AACCATTAGTTGTACTGATT+TGG | 0.271261 | 5.3:+55929920 | MS.gene009881:CDS |
| CAGCTTTGAAGGGTGTTAAA+TGG | 0.287007 | 5.3:-55930990 | None:intergenic |
| CACATACTCCAAAGGTTTAG+AGG | 0.287821 | 5.3:-55928890 | None:intergenic |
| AGAAAGGACAACTTGGAGTA+TGG | 0.288989 | 5.3:+55929670 | MS.gene009881:intron |
| AAATGAAAAGATTGAGAAAC+TGG | 0.311392 | 5.3:+55927225 | MS.gene009881:CDS |
| TCCTGGCAACTGGGAGTTCT+AGG | 0.318166 | 5.3:+55931295 | MS.gene009881:CDS |
| CTATATTGTAGGCGCGCATT+TGG | 0.318325 | 5.3:+55930767 | MS.gene009881:intron |
| GCATATTTCTCTCCAATAAC+TGG | 0.326448 | 5.3:+55930856 | MS.gene009881:CDS |
| TCTCTTTCAATGAGAACTTT+GGG | 0.330765 | 5.3:-55927115 | None:intergenic |
| TTGGTCTGGAATCACACATT+TGG | 0.346565 | 5.3:-55929458 | None:intergenic |
| TGGATCCCATTCAGCTTTGA+AGG | 0.350384 | 5.3:-55931001 | None:intergenic |
| CATGACTATGCACAATTTCT+CGG | 0.350606 | 5.3:-55930957 | None:intergenic |
| TTAGAGTCACTTGCTGTTGT+TGG | 0.357782 | 5.3:+55931126 | MS.gene009881:CDS |
| GGACTGATGGTTGTGATGTT+CGG | 0.374930 | 5.3:-55931243 | None:intergenic |
| TTTCTGAGAGTTAGCGTAAT+GGG | 0.378118 | 5.3:-55927283 | None:intergenic |
| GTCTCTTTCAATGAGAACTT+TGG | 0.378205 | 5.3:-55927116 | None:intergenic |
| GTGAAGAAAACCAAAGTTAT+CGG | 0.387021 | 5.3:-55930213 | None:intergenic |
| CGTGATGATATCCTGGCAAC+TGG | 0.388271 | 5.3:+55931285 | MS.gene009881:CDS |
| TGGTCTGGAATCACACATTT+GGG | 0.388716 | 5.3:-55929457 | None:intergenic |
| TACTGAGCATGGTGTTGTTC+CGG | 0.398936 | 5.3:+55928852 | MS.gene009881:CDS |
| CTTGTATCTATAAAATCAAT+AGG | 0.399051 | 5.3:-55931189 | None:intergenic |
| TAATCCTACAAATGATTGTA+TGG | 0.401174 | 5.3:+55929875 | MS.gene009881:CDS |
| TGCATCACCATTCCTATGAT+TGG | 0.401366 | 5.3:-55930570 | None:intergenic |
| CAATTTCCATTCAGTCTGCT+TGG | 0.404544 | 5.3:-55932076 | None:intergenic |
| GACTGATGGTTGTGATGTTC+GGG | 0.410135 | 5.3:-55931242 | None:intergenic |
| CCACAAGTCAAAAGGATGTC+TGG | 0.420331 | 5.3:-55930650 | None:intergenic |
| CATCCTGTTGTCGGGAGATA+AGG | 0.421944 | 5.3:+55929552 | MS.gene009881:CDS |
| CTCCAAATCAGTACAACTAA+TGG | 0.423674 | 5.3:-55929922 | None:intergenic |
| TATATTGTAGGCGCGCATTT+GGG | 0.425675 | 5.3:+55930768 | MS.gene009881:intron |
| CACTTTGAATTGTCCACATC+GGG | 0.441106 | 5.3:+55928825 | MS.gene009881:CDS |
| TGGTCATGAAGCGGGTTTCA+AGG | 0.442646 | 5.3:+55927431 | MS.gene009881:CDS |
| AGTTGTACTGATTTGGAGAC+TGG | 0.447052 | 5.3:+55929927 | MS.gene009881:CDS |
| CTGGAAAATGCTTTATGGTA+TGG | 0.452127 | 5.3:+55930157 | MS.gene009881:CDS |
| TAGACCATACAATCATTTGT+AGG | 0.454241 | 5.3:-55929879 | None:intergenic |
| TAACCTTATCTCCCGACAAC+AGG | 0.455373 | 5.3:-55929555 | None:intergenic |
| ATCTGAGACGGTCGAGGAGA+AGG | 0.459772 | 5.3:+55931936 | MS.gene009881:CDS |
| GGACAATCGTCTTCGTATAT+GGG | 0.460807 | 5.3:+55930903 | MS.gene009881:CDS |
| ACAGCGCAACTCACTTGGTC+TGG | 0.463787 | 5.3:-55929472 | None:intergenic |
| AATGAGAACTTTGGGGAAAG+AGG | 0.464363 | 5.3:-55927107 | None:intergenic |
| TCGACATGCGATCCAATCAT+AGG | 0.465469 | 5.3:+55930558 | MS.gene009881:CDS |
| TAACACCCTTCAAAGCTGAA+TGG | 0.473837 | 5.3:+55930995 | MS.gene009881:CDS |
| ACAACAGCAAGTGACTCTAA+TGG | 0.474300 | 5.3:-55931123 | None:intergenic |
| AAAAGGATGTCTGGTTGCAT+TGG | 0.474611 | 5.3:-55930641 | None:intergenic |
| TAGGAATGGCATGTCTTAGC+TGG | 0.475369 | 5.3:-55928921 | None:intergenic |
| ACCTAGAACTCCCAGTTGCC+AGG | 0.480432 | 5.3:-55931296 | None:intergenic |
| CTATAAAATCAATAGGATGC+AGG | 0.481005 | 5.3:-55931182 | None:intergenic |
| AATATTACATGCCATCCATC+AGG | 0.482629 | 5.3:-55929978 | None:intergenic |
| AAAGAGGTTCTACGAGTAAC+CGG | 0.483672 | 5.3:-55927091 | None:intergenic |
| GATCATTTCCACAAGTCAAA+AGG | 0.485595 | 5.3:-55930658 | None:intergenic |
| AACACCCTTCAAAGCTGAAT+GGG | 0.487045 | 5.3:+55930996 | MS.gene009881:CDS |
| AAGAATAACATCCTGTTGTC+GGG | 0.488018 | 5.3:+55929544 | MS.gene009881:CDS |
| TTGAAACCCGCTTCATGACC+AGG | 0.490682 | 5.3:-55927429 | None:intergenic |
| GTGCTCGTGGCCGATAACTT+TGG | 0.491495 | 5.3:+55930203 | MS.gene009881:CDS |
| TTTACTAGGGGCCAAACACC+TGG | 0.499445 | 5.3:+55930138 | MS.gene009881:intron |
| ACTATGCACAATTTCTCGGC+TGG | 0.500089 | 5.3:-55930953 | None:intergenic |
| AAAGAAAACAAGGTTTCATA+GGG | 0.501938 | 5.3:-55927473 | None:intergenic |
| TATAAAATCAATAGGATGCA+GGG | 0.504604 | 5.3:-55931181 | None:intergenic |
| ATCGATGAATCCGATGATGA+TGG | 0.505501 | 5.3:+55932024 | MS.gene009881:CDS |
| GAAGAATAACATCCTGTTGT+CGG | 0.505802 | 5.3:+55929543 | MS.gene009881:CDS |
| CTGAGAAGAAACGTGGTAAG+AGG | 0.511583 | 5.3:+55931989 | MS.gene009881:CDS |
| TCATAAAAGAAAGGACAACT+TGG | 0.517742 | 5.3:+55929663 | MS.gene009881:intron |
| GAAAGGACAACTTGGAGTAT+GGG | 0.518265 | 5.3:+55929671 | MS.gene009881:intron |
| GGATCCCATTCAGCTTTGAA+GGG | 0.518856 | 5.3:-55931000 | None:intergenic |
| GAAAGCAAAATTGTGGTTTG+TGG | 0.518880 | 5.3:+55931961 | MS.gene009881:CDS |
| TCATCCACGTGATGATATCC+TGG | 0.520328 | 5.3:+55931278 | MS.gene009881:CDS |
| TAACAACACGCTTGTGCTCA+AGG | 0.528107 | 5.3:-55930828 | None:intergenic |
| AAGCTTATTCACCGGACTGA+TGG | 0.528676 | 5.3:-55931256 | None:intergenic |
| GTCTATTCCGCATCCTCAGA+TGG | 0.528780 | 5.3:+55929897 | MS.gene009881:CDS |
| TGATAACAGCGCAACTCACT+TGG | 0.530316 | 5.3:-55929477 | None:intergenic |
| AAAGATTGAGAAACTGGAAG+TGG | 0.531341 | 5.3:+55927231 | MS.gene009881:CDS |
| ATGGATATTCACTATGAGAA+AGG | 0.532012 | 5.3:+55930176 | MS.gene009881:CDS |
| CAAAATCCAAGCAGACTGAA+TGG | 0.532156 | 5.3:+55932070 | MS.gene009881:CDS |
| CTCTTTCAATGAGAACTTTG+GGG | 0.535912 | 5.3:-55927114 | None:intergenic |
| TGAGAAGGTTTACGAGAAAG+TGG | 0.536172 | 5.3:+55929698 | MS.gene009881:CDS |
| CTATGCACAATTTCTCGGCT+GGG | 0.540395 | 5.3:-55930952 | None:intergenic |
| CCATCAGGATTCAGGTTCAT+CGG | 0.543513 | 5.3:-55929963 | None:intergenic |
| AAGAAGCCTGGTCATGAAGC+GGG | 0.545678 | 5.3:+55927423 | MS.gene009881:CDS |
| CAAAATTCTTACTACGTCAC+AGG | 0.548895 | 5.3:+55930882 | MS.gene009881:CDS |
| AACTCTCAGAAAAGTTTGCA+AGG | 0.549049 | 5.3:+55927294 | MS.gene009881:CDS |
| GGTCATGAAGCGGGTTTCAA+GGG | 0.549246 | 5.3:+55927432 | MS.gene009881:CDS |
| GATATGCGTCACTTAGAAGC+TGG | 0.550288 | 5.3:+55930790 | MS.gene009881:CDS |
| AAGATTGAGAAACTGGAAGT+GGG | 0.551746 | 5.3:+55927232 | MS.gene009881:CDS |
| CCGATGAACCTGAATCCTGA+TGG | 0.557467 | 5.3:+55929963 | MS.gene009881:CDS |
| AAGAAACGTGGTAAGAGGAA+AGG | 0.563572 | 5.3:+55931994 | MS.gene009881:CDS |
| TAGTAGACGGATAACAAGCT+TGG | 0.565758 | 5.3:+55929507 | MS.gene009881:CDS |
| TTATAGGTGTGTAAGAAGCC+TGG | 0.566694 | 5.3:+55927411 | MS.gene009881:intron |
| ACAGGATGTTATTCTTCGTA+GGG | 0.566721 | 5.3:-55929537 | None:intergenic |
| GCAGTTGGTAGCAGAAGTCA+TGG | 0.572898 | 5.3:+55931218 | MS.gene009881:CDS |
| AATGGTTCCATCTGAGGATG+CGG | 0.574097 | 5.3:-55929904 | None:intergenic |
| ACAACTAATGGTTCCATCTG+AGG | 0.576667 | 5.3:-55929910 | None:intergenic |
| AGATACAAGTACAGGGCAGT+TGG | 0.578810 | 5.3:+55931203 | MS.gene009881:CDS |
| TGAGAAAGGTCTTGTGCTCG+TGG | 0.581673 | 5.3:+55930190 | MS.gene009881:CDS |
| GGAAATGAATCCATCATCAT+CGG | 0.582701 | 5.3:-55932034 | None:intergenic |
| TCTGTTCATTTGGAAGCCAA+AGG | 0.589673 | 5.3:+55931909 | MS.gene009881:CDS |
| CGTGGATGAAGCTTATTCAC+CGG | 0.591688 | 5.3:-55931264 | None:intergenic |
| TCGGTTCTTTAACATGGCAC+CGG | 0.592131 | 5.3:+55927072 | None:intergenic |
| CAAAGCTGAATGGGATCCAA+AGG | 0.592946 | 5.3:+55931005 | MS.gene009881:CDS |
| ATGCGATCCAATCATAGGAA+TGG | 0.595883 | 5.3:+55930563 | MS.gene009881:CDS |
| GAACATCACAACCATCAGTC+CGG | 0.595957 | 5.3:+55931245 | MS.gene009881:CDS |
| ACTTAGGCTTACCGTAGGAA+TGG | 0.598093 | 5.3:-55928935 | None:intergenic |
| GGATGTTATTCTTCGTAGGG+TGG | 0.599457 | 5.3:-55929534 | None:intergenic |
| ATTGTCTCGCTGCTCGACAA+AGG | 0.600055 | 5.3:+55932095 | MS.gene009881:CDS |
| CTGGTTGCATTGGATTGCAA+TGG | 0.602433 | 5.3:-55930631 | None:intergenic |
| TAAGAAGCCTGGTCATGAAG+CGG | 0.617194 | 5.3:+55927422 | MS.gene009881:CDS |
| CATCGGGTCACTACTGAGCA+TGG | 0.620894 | 5.3:+55928841 | MS.gene009881:CDS |
| CGTTCAAACACATACTCCAA+AGG | 0.622066 | 5.3:-55928898 | None:intergenic |
| TTATCAGATATCATAGTAGA+CGG | 0.622532 | 5.3:+55929494 | MS.gene009881:CDS |
| GTGATGATATCCTGGCAACT+GGG | 0.623672 | 5.3:+55931286 | MS.gene009881:CDS |
| AACAGGATGTTATTCTTCGT+AGG | 0.624223 | 5.3:-55929538 | None:intergenic |
| GAAGGACGAAAGCAAAATTG+TGG | 0.625614 | 5.3:+55931954 | MS.gene009881:CDS |
| CCACTTTGAATTGTCCACAT+CGG | 0.628827 | 5.3:+55928824 | MS.gene009881:CDS |
| TGCTCAGTAGTGACCCGATG+TGG | 0.633127 | 5.3:-55928838 | None:intergenic |
| AGAAGAAGAAGCACTCGAGG+AGG | 0.636304 | 5.3:+55927171 | MS.gene009881:CDS |
| GCTAAGACATGCCATTCCTA+CGG | 0.637351 | 5.3:+55928924 | MS.gene009881:CDS |
| GCTTGTGCTCAAGGCTACAG+AGG | 0.642505 | 5.3:-55930819 | None:intergenic |
| AGAAGAAGAAGAAGCACTCG+AGG | 0.642739 | 5.3:+55927168 | MS.gene009881:CDS |
| TGAACCTGAATCCTGATGGA+TGG | 0.648338 | 5.3:+55929967 | MS.gene009881:CDS |
| CTTGTGCTCAAGGCTACAGA+GGG | 0.650690 | 5.3:-55930818 | None:intergenic |
| AGGATTCAGGTTCATCGGAG+AGG | 0.675833 | 5.3:-55929958 | None:intergenic |
| CCGATGTGGACAATTCAAAG+TGG | 0.705167 | 5.3:-55928824 | None:intergenic |
| GGAAAAGCTGAGAAGAAACG+TGG | 0.725862 | 5.3:+55931982 | MS.gene009881:CDS |
| GTTGCCAGGATATCATCACG+TGG | 0.762098 | 5.3:-55931282 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAACAATTTAATTAT+TGG | - | chr5.3:55929289-55929308 | None:intergenic | 10.0% |
| !! | ATAATTTAAGAAAAAACATT+TGG | - | chr5.3:55930009-55930028 | None:intergenic | 10.0% |
| !!! | TATATAAGTGAAAATTTTAA+TGG | + | chr5.3:55931153-55931172 | MS.gene009881:CDS | 10.0% |
| !! | AAGCTATATTATTAATCTTA+AGG | + | chr5.3:55931854-55931873 | MS.gene009881:intron | 15.0% |
| !! | AATCAAAATTTCAACTTTAA+AGG | - | chr5.3:55931628-55931647 | None:intergenic | 15.0% |
| !! | AGCTATATTATTAATCTTAA+GGG | + | chr5.3:55931855-55931874 | MS.gene009881:intron | 15.0% |
| !! | ATGTAATTTACAGTAATAAT+AGG | - | chr5.3:55929581-55929600 | None:intergenic | 15.0% |
| !! | ATTCTTAAAAAGATAAATGT+TGG | - | chr5.3:55930440-55930459 | None:intergenic | 15.0% |
| !! | TATACAAATAAAAAAGGAAA+TGG | - | chr5.3:55928518-55928537 | None:intergenic | 15.0% |
| !! | TTTGTTAATTAGATATACAT+AGG | + | chr5.3:55931803-55931822 | MS.gene009881:intron | 15.0% |
| !!! | AGTTTTCCTATTAAAAAATT+AGG | - | chr5.3:55928416-55928435 | None:intergenic | 15.0% |
| !!! | ATATTTTAAAAGAATGACTT+AGG | - | chr5.3:55928954-55928973 | None:intergenic | 15.0% |
| !!! | TTTTAATTGAAAAACTTTGT+AGG | + | chr5.3:55929850-55929869 | MS.gene009881:intron | 15.0% |
| !! | AAAAAAATTCATAACTACGA+AGG | - | chr5.3:55930384-55930403 | None:intergenic | 20.0% |
| !! | AAAAAATTCATAACTACGAA+GGG | - | chr5.3:55930383-55930402 | None:intergenic | 20.0% |
| !! | AATATTGTTTATGTAATTGC+AGG | + | chr5.3:55931098-55931117 | MS.gene009881:intron | 20.0% |
| !! | ATAATTACATGACTGAAAAA+AGG | - | chr5.3:55929129-55929148 | None:intergenic | 20.0% |
| !! | ATTTCTCATATTGTTTGTAT+GGG | + | chr5.3:55927525-55927544 | MS.gene009881:intron | 20.0% |
| !! | CTGATAATAGTTTAAGAAAA+TGG | + | chr5.3:55927838-55927857 | MS.gene009881:intron | 20.0% |
| !! | CTTGTATCTATAAAATCAAT+AGG | - | chr5.3:55931192-55931211 | None:intergenic | 20.0% |
| !! | GAACTTGAATATGTATAAAA+AGG | - | chr5.3:55930699-55930718 | None:intergenic | 20.0% |
| !! | GTTGCATATACAAATAAAAA+AGG | - | chr5.3:55928524-55928543 | None:intergenic | 20.0% |
| !! | TAATTACATGACTGAAAAAA+GGG | - | chr5.3:55929128-55929147 | None:intergenic | 20.0% |
| !! | TCCACAATGAAAATATTAAA+AGG | - | chr5.3:55929262-55929281 | None:intergenic | 20.0% |
| !! | TCCATATAAAATCATCTTTA+AGG | - | chr5.3:55927697-55927716 | None:intergenic | 20.0% |
| !! | TGAATGATACATAAACATTA+TGG | - | chr5.3:55929360-55929379 | None:intergenic | 20.0% |
| !!! | AATATATTTTGCTATAATGC+CGG | - | chr5.3:55928035-55928054 | None:intergenic | 20.0% |
| !!! | ACATGACCTAATTTTTTAAT+AGG | + | chr5.3:55928407-55928426 | MS.gene009881:intron | 20.0% |
| !!! | ATGAATTTTTTTCTTGGTTA+GGG | + | chr5.3:55930392-55930411 | MS.gene009881:intron | 20.0% |
| !!! | ATTTTATAGATACAAGTACA+GGG | + | chr5.3:55931196-55931215 | MS.gene009881:CDS | 20.0% |
| !!! | GTAGTTATGAATTTTTTTCT+TGG | + | chr5.3:55930386-55930405 | MS.gene009881:intron | 20.0% |
| !!! | GTTACTTGATATAATTTTTC+AGG | + | chr5.3:55931884-55931903 | MS.gene009881:intron | 20.0% |
| !!! | TATGAATTTTTTTCTTGGTT+AGG | + | chr5.3:55930391-55930410 | MS.gene009881:intron | 20.0% |
| !!! | TATTACATTTTAGGACTATA+TGG | - | chr5.3:55930289-55930308 | None:intergenic | 20.0% |
| !!! | TATTGGAATTTTGTTGTTAT+AGG | + | chr5.3:55927395-55927414 | MS.gene009881:intron | 20.0% |
| !!! | TCCTTAAAGATGATTTTATA+TGG | + | chr5.3:55927693-55927712 | MS.gene009881:intron | 20.0% |
| !!! | TCCTTTTAATATTTTCATTG+TGG | + | chr5.3:55929258-55929277 | MS.gene009881:intron | 20.0% |
| !!! | TCTACTTTTTCTTTGAAAAT+TGG | + | chr5.3:55928222-55928241 | MS.gene009881:intron | 20.0% |
| !!! | TGTATGTGTTATTTTTACTA+GGG | + | chr5.3:55930125-55930144 | MS.gene009881:intron | 20.0% |
| !!! | TTGTATGTGTTATTTTTACT+AGG | + | chr5.3:55930124-55930143 | MS.gene009881:intron | 20.0% |
| !!! | TTTGATTTACAAAATTGCAA+GGG | + | chr5.3:55931641-55931660 | MS.gene009881:intron | 20.0% |
| !!! | TTTTATTTTACTAGTGAATG+TGG | + | chr5.3:55927551-55927570 | MS.gene009881:intron | 20.0% |
| !!! | TTTTGATTTACAAAATTGCA+AGG | + | chr5.3:55931640-55931659 | MS.gene009881:intron | 20.0% |
| ! | AAAAATGTTGTGTTTGTTTG+AGG | + | chr5.3:55927630-55927649 | MS.gene009881:intron | 25.0% |
| ! | AAAGAAAACAAGGTTTCATA+GGG | - | chr5.3:55927476-55927495 | None:intergenic | 25.0% |
| ! | AAAGGCTTAAAAATTTGATG+AGG | - | chr5.3:55931610-55931629 | None:intergenic | 25.0% |
| ! | AAATGAAAAGATTGAGAAAC+TGG | + | chr5.3:55927225-55927244 | MS.gene009881:CDS | 25.0% |
| ! | AAGAAGAAGAAGAAGAAAAT+GGG | + | chr5.3:55927194-55927213 | MS.gene009881:CDS | 25.0% |
| ! | CAAAATGGTTTCTATATTGT+AGG | + | chr5.3:55930756-55930775 | MS.gene009881:intron | 25.0% |
| ! | CAATATGGTATATTGTGATT+TGG | + | chr5.3:55929061-55929080 | MS.gene009881:intron | 25.0% |
| ! | CATTTCTCATATTGTTTGTA+TGG | + | chr5.3:55927524-55927543 | MS.gene009881:intron | 25.0% |
| ! | CTGCTTTAATCATAAAAGAA+AGG | + | chr5.3:55929654-55929673 | MS.gene009881:intron | 25.0% |
| ! | GAAAATGAACAATTACATGA+AGG | - | chr5.3:55929788-55929807 | None:intergenic | 25.0% |
| ! | GTTGAAAAGTTTGCATATTA+CGG | - | chr5.3:55928470-55928489 | None:intergenic | 25.0% |
| ! | TAAGCCTTCAATTTATGAAT+AGG | - | chr5.3:55929212-55929231 | None:intergenic | 25.0% |
| ! | TAATCCTACAAATGATTGTA+TGG | + | chr5.3:55929875-55929894 | MS.gene009881:CDS | 25.0% |
| ! | TATAAAATCAATAGGATGCA+GGG | - | chr5.3:55931184-55931203 | None:intergenic | 25.0% |
| ! | TATGATTAAAGCAGAAAAAG+AGG | - | chr5.3:55929648-55929667 | None:intergenic | 25.0% |
| ! | TCATATATGAAGGACTAAAT+AGG | - | chr5.3:55929335-55929354 | None:intergenic | 25.0% |
| ! | TTAAACAAAAAAGCTACCTT+TGG | - | chr5.3:55931024-55931043 | None:intergenic | 25.0% |
| ! | TTAGAATATCATTGCTCTTA+GGG | + | chr5.3:55928277-55928296 | MS.gene009881:intron | 25.0% |
| ! | TTATCAGATATCATAGTAGA+CGG | + | chr5.3:55929494-55929513 | MS.gene009881:CDS | 25.0% |
| ! | TTCTGTATCCATACTATTAA+AGG | - | chr5.3:55931835-55931854 | None:intergenic | 25.0% |
| !! | AATTGGTTTCATATATGACA+TGG | - | chr5.3:55930497-55930516 | None:intergenic | 25.0% |
| !! | ATCTTTTGTCATACATAGAA+AGG | - | chr5.3:55931397-55931416 | None:intergenic | 25.0% |
| !! | CTGTTTTATGTGTTTCAATA+TGG | + | chr5.3:55929046-55929065 | MS.gene009881:intron | 25.0% |
| !! | GATGATTTTATATGGAACAA+AGG | + | chr5.3:55927701-55927720 | MS.gene009881:intron | 25.0% |
| !! | GATTTTATAGATACAAGTAC+AGG | + | chr5.3:55931195-55931214 | MS.gene009881:CDS | 25.0% |
| !! | TAAGTTGCGATTTTTCTTAT+GGG | + | chr5.3:55927372-55927391 | MS.gene009881:intron | 25.0% |
| !! | TTTATCGATTAGCAATATGA+TGG | + | chr5.3:55928681-55928700 | MS.gene009881:intron | 25.0% |
| !!! | ACTTTTTCTTTGAAAATTGG+TGG | + | chr5.3:55928225-55928244 | MS.gene009881:intron | 25.0% |
| !!! | AGAATTTTGTTTCCAGTTAT+TGG | - | chr5.3:55930871-55930890 | None:intergenic | 25.0% |
| !!! | ATGATTGATTTGTTCTTGTA+AGG | + | chr5.3:55927750-55927769 | MS.gene009881:intron | 25.0% |
| !!! | CTTTAGTTTTGAAGAATGTT+TGG | + | chr5.3:55928983-55929002 | MS.gene009881:intron | 25.0% |
| !!! | GTATGTGTTATTTTTACTAG+GGG | + | chr5.3:55930126-55930145 | MS.gene009881:intron | 25.0% |
| !!! | TAACTTTGCTACCTTTTTTA+TGG | - | chr5.3:55930604-55930623 | None:intergenic | 25.0% |
| !!! | TCACAAAAGTTGTTGATTTT+TGG | + | chr5.3:55928251-55928270 | MS.gene009881:intron | 25.0% |
| !!! | TCTTGTTGGTTTAAAACATT+GGG | + | chr5.3:55931474-55931493 | MS.gene009881:intron | 25.0% |
| !!! | TTAAGTTGCGATTTTTCTTA+TGG | + | chr5.3:55927371-55927390 | MS.gene009881:intron | 25.0% |
| AAAAAAGGTAGCAAAGTTAC+TGG | + | chr5.3:55930605-55930624 | MS.gene009881:CDS | 30.0% | |
| AAAATTGAACCTACACAAAG+TGG | + | chr5.3:55931508-55931527 | MS.gene009881:intron | 30.0% | |
| AAAGATAAATGTTGGACAGA+TGG | - | chr5.3:55930432-55930451 | None:intergenic | 30.0% | |
| AAATTAGGTCATGTTTGACT+CGG | - | chr5.3:55928401-55928420 | None:intergenic | 30.0% | |
| ACGATTAGTATGATTATCTG+AGG | - | chr5.3:55931334-55931353 | None:intergenic | 30.0% | |
| ACTATCCTAGATTCACAATT+AGG | + | chr5.3:55928082-55928101 | MS.gene009881:intron | 30.0% | |
| AGAAAAAGTAGATAGTGACA+CGG | - | chr5.3:55928214-55928233 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAAAATG+GGG | + | chr5.3:55927195-55927214 | MS.gene009881:CDS | 30.0% | |
| ATGGATATTCACTATGAGAA+AGG | + | chr5.3:55930176-55930195 | MS.gene009881:CDS | 30.0% | |
| ATGTTGATATTCAACTTACC+AGG | - | chr5.3:55927507-55927526 | None:intergenic | 30.0% | |
| CAAAGAAAACAAGGTTTCAT+AGG | - | chr5.3:55927477-55927496 | None:intergenic | 30.0% | |
| CACACCTATTCATAAATTGA+AGG | + | chr5.3:55929205-55929224 | MS.gene009881:intron | 30.0% | |
| CAGTGTAAACGAAAAAGTAA+TGG | - | chr5.3:55929092-55929111 | None:intergenic | 30.0% | |
| CATTATGGACTCATATATGA+AGG | - | chr5.3:55929345-55929364 | None:intergenic | 30.0% | |
| CTATAAAATCAATAGGATGC+AGG | - | chr5.3:55931185-55931204 | None:intergenic | 30.0% | |
| CTATAGCCAACAAAATTTGA+TGG | - | chr5.3:55930319-55930338 | None:intergenic | 30.0% | |
| CTATCCTAGATTCACAATTA+GGG | + | chr5.3:55928083-55928102 | MS.gene009881:intron | 30.0% | |
| CTTCAATTTATGAATAGGTG+TGG | - | chr5.3:55929207-55929226 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAAGAAAA+TGG | + | chr5.3:55927193-55927212 | MS.gene009881:CDS | 30.0% | |
| GACTTATTTCAACTGTTATG+CGG | + | chr5.3:55928566-55928585 | MS.gene009881:intron | 30.0% | |
| GAGAAATAAAGTTGTCACAT+AGG | - | chr5.3:55928146-55928165 | None:intergenic | 30.0% | |
| GAGAGAAAAATATTGAGACA+AGG | - | chr5.3:55928719-55928738 | None:intergenic | 30.0% | |
| GTGAAGAAAACCAAAGTTAT+CGG | - | chr5.3:55930216-55930235 | None:intergenic | 30.0% | |
| GTTAGAATATCATTGCTCTT+AGG | + | chr5.3:55928276-55928295 | MS.gene009881:intron | 30.0% | |
| TACATGAGTTTACTCTTCAA+TGG | - | chr5.3:55931687-55931706 | None:intergenic | 30.0% | |
| TAGACCATACAATCATTTGT+AGG | - | chr5.3:55929882-55929901 | None:intergenic | 30.0% | |
| TAGTCATTGAGTCCAAAAAA+AGG | + | chr5.3:55930463-55930482 | MS.gene009881:intron | 30.0% | |
| TCATAAAAGAAAGGACAACT+TGG | + | chr5.3:55929663-55929682 | MS.gene009881:intron | 30.0% | |
| TCTCTTTCAATGAGAACTTT+GGG | - | chr5.3:55927118-55927137 | None:intergenic | 30.0% | |
| TGTCTGACATCAATAAATGT+CGG | + | chr5.3:55927872-55927891 | MS.gene009881:intron | 30.0% | |
| ! | ATAAAATGAAGAGTGTGTCT+GGG | - | chr5.3:55928666-55928685 | None:intergenic | 30.0% |
| ! | ATGCAATAGTGGGAAAAAAA+GGG | + | chr5.3:55928339-55928358 | MS.gene009881:intron | 30.0% |
| ! | CAGTCTAGAACTCAAATAAA+AGG | + | chr5.3:55927964-55927983 | MS.gene009881:intron | 30.0% |
| ! | GGAGGGATATATTACATTTT+AGG | - | chr5.3:55930298-55930317 | None:intergenic | 30.0% |
| ! | GGAGTTTTACAAAGAAAACA+AGG | - | chr5.3:55927486-55927505 | None:intergenic | 30.0% |
| ! | GGATTCTATCTTTGGTAATA+TGG | + | chr5.3:55930924-55930943 | MS.gene009881:CDS | 30.0% |
| ! | TGTCTCAATATTTTTCTCTC+TGG | + | chr5.3:55928719-55928738 | MS.gene009881:intron | 30.0% |
| ! | TGTGGTTTGATGATATATGA+TGG | + | chr5.3:55927569-55927588 | MS.gene009881:intron | 30.0% |
| ! | TGTTTTCTTTGTAAAACTCC+TGG | + | chr5.3:55927486-55927505 | MS.gene009881:CDS | 30.0% |
| ! | TTTAGCACTCACTCTTTTAT+TGG | - | chr5.3:55931555-55931574 | None:intergenic | 30.0% |
| ! | TTTTAAACACACTCTCTTGT+TGG | + | chr5.3:55931460-55931479 | MS.gene009881:intron | 30.0% |
| !! | AACCATTAGTTGTACTGATT+TGG | + | chr5.3:55929920-55929939 | MS.gene009881:CDS | 30.0% |
| !! | AAGTTTGCAAGGTTTGTTAA+TGG | + | chr5.3:55927305-55927324 | MS.gene009881:intron | 30.0% |
| !! | CTCTTGTTGGTTTAAAACAT+TGG | + | chr5.3:55931473-55931492 | MS.gene009881:intron | 30.0% |
| !! | GAACAAAGGTGATTTTGTTT+TGG | + | chr5.3:55927715-55927734 | MS.gene009881:intron | 30.0% |
| !! | GCAGTTTTGATCCATAAAAA+AGG | + | chr5.3:55930590-55930609 | MS.gene009881:CDS | 30.0% |
| !! | GTTTTGATGCTAATAGGAAA+GGG | + | chr5.3:55927254-55927273 | MS.gene009881:CDS | 30.0% |
| !!! | ATGGCTATAGATCCTTTTTT+TGG | - | chr5.3:55930478-55930497 | None:intergenic | 30.0% |
| !!! | CTTTTATTTGAGTTCTAGAC+TGG | - | chr5.3:55927966-55927985 | None:intergenic | 30.0% |
| AAAGATTGAGAAACTGGAAG+TGG | + | chr5.3:55927231-55927250 | MS.gene009881:CDS | 35.0% | |
| AACACCTGGAAAATGCTTTA+TGG | + | chr5.3:55930152-55930171 | MS.gene009881:CDS | 35.0% | |
| AACAGGATGTTATTCTTCGT+AGG | - | chr5.3:55929541-55929560 | None:intergenic | 35.0% | |
| AACTCTCAGAAAAGTTTGCA+AGG | + | chr5.3:55927294-55927313 | MS.gene009881:CDS | 35.0% | |
| AAGAATAACATCCTGTTGTC+GGG | + | chr5.3:55929544-55929563 | MS.gene009881:CDS | 35.0% | |
| AAGATTGAGAAACTGGAAGT+GGG | + | chr5.3:55927232-55927251 | MS.gene009881:CDS | 35.0% | |
| AATATTACATGCCATCCATC+AGG | - | chr5.3:55929981-55930000 | None:intergenic | 35.0% | |
| ACAGGATGTTATTCTTCGTA+GGG | - | chr5.3:55929540-55929559 | None:intergenic | 35.0% | |
| ACATGCATGCTGAAACAAAA+TGG | + | chr5.3:55930741-55930760 | MS.gene009881:intron | 35.0% | |
| ACATTTACAGAATGACCTTG+AGG | - | chr5.3:55930073-55930092 | None:intergenic | 35.0% | |
| ACTTTCTCTCTCTATTGCTT+TGG | + | chr5.3:55928185-55928204 | MS.gene009881:intron | 35.0% | |
| AGAGTATGTTATGCCATGTT+TGG | + | chr5.3:55927657-55927676 | MS.gene009881:intron | 35.0% | |
| AGCCAACAAAATTTGATGGA+GGG | - | chr5.3:55930315-55930334 | None:intergenic | 35.0% | |
| AGCTAATGTAGATGCAATAG+TGG | + | chr5.3:55928328-55928347 | MS.gene009881:intron | 35.0% | |
| AGGAATCAGTGGCTAAATAA+AGG | - | chr5.3:55929628-55929647 | None:intergenic | 35.0% | |
| ATTTGTTCTTGTAAGGACTG+GGG | + | chr5.3:55927757-55927776 | MS.gene009881:intron | 35.0% | |
| CAAAATTCTTACTACGTCAC+AGG | + | chr5.3:55930882-55930901 | MS.gene009881:CDS | 35.0% | |
| CAAGTCAATATCGCAAAAGA+TGG | - | chr5.3:55928795-55928814 | None:intergenic | 35.0% | |
| CAGAAAAACCTCTAAACCTT+TGG | + | chr5.3:55928882-55928901 | MS.gene009881:CDS | 35.0% | |
| CATCAATAAATGTCGGATAC+TGG | + | chr5.3:55927879-55927898 | MS.gene009881:intron | 35.0% | |
| CATGACTATGCACAATTTCT+CGG | - | chr5.3:55930960-55930979 | None:intergenic | 35.0% | |
| CGTATATGGGATTCTATCTT+TGG | + | chr5.3:55930916-55930935 | MS.gene009881:CDS | 35.0% | |
| CTCCAAATCAGTACAACTAA+TGG | - | chr5.3:55929925-55929944 | None:intergenic | 35.0% | |
| CTCTTTCAATGAGAACTTTG+GGG | - | chr5.3:55927117-55927136 | None:intergenic | 35.0% | |
| CTGGAAAATGCTTTATGGTA+TGG | + | chr5.3:55930157-55930176 | MS.gene009881:CDS | 35.0% | |
| CTTACCCTAATTGTGAATCT+AGG | - | chr5.3:55928090-55928109 | None:intergenic | 35.0% | |
| GAAAGCAAAATTGTGGTTTG+TGG | + | chr5.3:55931961-55931980 | MS.gene009881:CDS | 35.0% | |
| GAACAATTACATGAAGGTTG+TGG | - | chr5.3:55929782-55929801 | None:intergenic | 35.0% | |
| GAAGAATAACATCCTGTTGT+CGG | + | chr5.3:55929543-55929562 | MS.gene009881:CDS | 35.0% | |
| GAGTATGTTATGCCATGTTT+GGG | + | chr5.3:55927658-55927677 | MS.gene009881:intron | 35.0% | |
| GATATGTCTGGTATGCTAAT+TGG | - | chr5.3:55930514-55930533 | None:intergenic | 35.0% | |
| GATCATTTCCACAAGTCAAA+AGG | - | chr5.3:55930661-55930680 | None:intergenic | 35.0% | |
| GCATATTTCTCTCCAATAAC+TGG | + | chr5.3:55930856-55930875 | MS.gene009881:CDS | 35.0% | |
| GCTAATGTAGATGCAATAGT+GGG | + | chr5.3:55928329-55928348 | MS.gene009881:intron | 35.0% | |
| GGAAATGAATCCATCATCAT+CGG | - | chr5.3:55932037-55932056 | None:intergenic | 35.0% | |
| GGACTTTGCCTTTAATAGTA+TGG | + | chr5.3:55931824-55931843 | MS.gene009881:intron | 35.0% | |
| GTCTCTTTCAATGAGAACTT+TGG | - | chr5.3:55927119-55927138 | None:intergenic | 35.0% | |
| TAGCCAACAAAATTTGATGG+AGG | - | chr5.3:55930316-55930335 | None:intergenic | 35.0% | |
| TGTATCATTCACTTTGTTCC+AGG | + | chr5.3:55929369-55929388 | MS.gene009881:intron | 35.0% | |
| TTGCATATTACGGTGAATCT+AGG | - | chr5.3:55928460-55928479 | None:intergenic | 35.0% | |
| ! | AAGGTTTAGAGGTTTTTCTG+CGG | - | chr5.3:55928882-55928901 | None:intergenic | 35.0% |
| ! | AGAGTTTTTGCTCGAACTTA+GGG | + | chr5.3:55929235-55929254 | MS.gene009881:intron | 35.0% |
| ! | ATCCCTCCATCAAATTTTGT+TGG | + | chr5.3:55930310-55930329 | MS.gene009881:intron | 35.0% |
| ! | ATTGTGAATCTAGGATAGTG+TGG | - | chr5.3:55928081-55928100 | None:intergenic | 35.0% |
| ! | GATAAAATGAAGAGTGTGTC+TGG | - | chr5.3:55928667-55928686 | None:intergenic | 35.0% |
| ! | GATGCAATAGTGGGAAAAAA+AGG | + | chr5.3:55928338-55928357 | MS.gene009881:intron | 35.0% |
| ! | GATTTGTTCTTGTAAGGACT+GGG | + | chr5.3:55927756-55927775 | MS.gene009881:intron | 35.0% |
| ! | GCGATTTTTCTTATGGGTAT+TGG | + | chr5.3:55927378-55927397 | MS.gene009881:intron | 35.0% |
| ! | TGCAATAGTGGGAAAAAAAG+GGG | + | chr5.3:55928340-55928359 | MS.gene009881:intron | 35.0% |
| ! | TTTAGGACTATATGGACATG+CGG | - | chr5.3:55930281-55930300 | None:intergenic | 35.0% |
| ! | TTTCTGAGAGTTAGCGTAAT+GGG | - | chr5.3:55927286-55927305 | None:intergenic | 35.0% |
| !! | AACCTTCTGTGTCATTTACA+GGG | + | chr5.3:55930535-55930554 | MS.gene009881:intron | 35.0% |
| !! | AAGTGGGTTTTGATGCTAAT+AGG | + | chr5.3:55927248-55927267 | MS.gene009881:CDS | 35.0% |
| !! | ACTCTATCTGCTATTTCACA+TGG | + | chr5.3:55928608-55928627 | MS.gene009881:intron | 35.0% |
| !! | CAAGGTTTGTTAATGGTCAT+TGG | + | chr5.3:55927312-55927331 | MS.gene009881:intron | 35.0% |
| !! | CATACCATAAAGCATTTTCC+AGG | - | chr5.3:55930159-55930178 | None:intergenic | 35.0% |
| !! | GGTTTTGATGCTAATAGGAA+AGG | + | chr5.3:55927253-55927272 | MS.gene009881:CDS | 35.0% |
| !! | TAAAGCATTTTCCAGGTGTT+TGG | - | chr5.3:55930152-55930171 | None:intergenic | 35.0% |
| !! | TAACCTTCTGTGTCATTTAC+AGG | + | chr5.3:55930534-55930553 | MS.gene009881:intron | 35.0% |
| !! | TGATTTGTTCTTGTAAGGAC+TGG | + | chr5.3:55927755-55927774 | MS.gene009881:intron | 35.0% |
| !! | TTTTCTGAGAGTTAGCGTAA+TGG | - | chr5.3:55927287-55927306 | None:intergenic | 35.0% |
| !!! | CTTTTGCGATATTGACTTGA+AGG | + | chr5.3:55928796-55928815 | MS.gene009881:intron | 35.0% |
| !!! | GTATGAGTGTTAGTTTTGTC+CGG | - | chr5.3:55927817-55927836 | None:intergenic | 35.0% |
| !!! | TTTTCAGGTCTCTGTTCATT+TGG | + | chr5.3:55931899-55931918 | MS.gene009881:intron | 35.0% |
| AAAAGGATGTCTGGTTGCAT+TGG | - | chr5.3:55930644-55930663 | None:intergenic | 40.0% | |
| AAAGAGGTTCTACGAGTAAC+CGG | - | chr5.3:55927094-55927113 | None:intergenic | 40.0% | |
| AACACCCTTCAAAGCTGAAT+GGG | + | chr5.3:55930996-55931015 | MS.gene009881:CDS | 40.0% | |
| AAGAAACGTGGTAAGAGGAA+AGG | + | chr5.3:55931994-55932013 | MS.gene009881:CDS | 40.0% | |
| ACAACAGCAAGTGACTCTAA+TGG | - | chr5.3:55931126-55931145 | None:intergenic | 40.0% | |
| ACAACTAATGGTTCCATCTG+AGG | - | chr5.3:55929913-55929932 | None:intergenic | 40.0% | |
| AGAAAGGACAACTTGGAGTA+TGG | + | chr5.3:55929670-55929689 | MS.gene009881:intron | 40.0% | |
| AGCAGAAAAAGAGGAATCAG+TGG | - | chr5.3:55929639-55929658 | None:intergenic | 40.0% | |
| AGGACAATCGTCTTCGTATA+TGG | + | chr5.3:55930902-55930921 | MS.gene009881:CDS | 40.0% | |
| ATCGATGAATCCGATGATGA+TGG | + | chr5.3:55932024-55932043 | MS.gene009881:CDS | 40.0% | |
| ATGCGATCCAATCATAGGAA+TGG | + | chr5.3:55930563-55930582 | MS.gene009881:CDS | 40.0% | |
| ATGTTATGCCATGTTTGGGA+AGG | + | chr5.3:55927662-55927681 | MS.gene009881:intron | 40.0% | |
| ATTGAACCTACACAAAGTGG+TGG | + | chr5.3:55931511-55931530 | MS.gene009881:intron | 40.0% | |
| CAAAATCCAAGCAGACTGAA+TGG | + | chr5.3:55932070-55932089 | MS.gene009881:CDS | 40.0% | |
| CAATTTCCATTCAGTCTGCT+TGG | - | chr5.3:55932079-55932098 | None:intergenic | 40.0% | |
| CACAGAAGGTTAGATATGTC+TGG | - | chr5.3:55930526-55930545 | None:intergenic | 40.0% | |
| CACATACTCCAAAGGTTTAG+AGG | - | chr5.3:55928893-55928912 | None:intergenic | 40.0% | |
| CACTTTGAATTGTCCACATC+GGG | + | chr5.3:55928825-55928844 | MS.gene009881:CDS | 40.0% | |
| CATTGCTCTTAGGGTAATAG+TGG | + | chr5.3:55928286-55928305 | MS.gene009881:intron | 40.0% | |
| CCACTTTGAATTGTCCACAT+CGG | + | chr5.3:55928824-55928843 | MS.gene009881:CDS | 40.0% | |
| CGTTCAAACACATACTCCAA+AGG | - | chr5.3:55928901-55928920 | None:intergenic | 40.0% | |
| GAAAGGACAACTTGGAGTAT+GGG | + | chr5.3:55929671-55929690 | MS.gene009881:intron | 40.0% | |
| GAAGGACGAAAGCAAAATTG+TGG | + | chr5.3:55931954-55931973 | MS.gene009881:CDS | 40.0% | |
| GACGCAATGTTATCAAACAC+CGG | + | chr5.3:55928013-55928032 | MS.gene009881:intron | 40.0% | |
| GCCAAAGGAAAAATCTGAGA+CGG | + | chr5.3:55931924-55931943 | MS.gene009881:CDS | 40.0% | |
| GGACAATCGTCTTCGTATAT+GGG | + | chr5.3:55930903-55930922 | MS.gene009881:CDS | 40.0% | |
| GGGAAAAAAAGGGGATCTTA+GGG | + | chr5.3:55928349-55928368 | MS.gene009881:intron | 40.0% | |
| TAACACCCTTCAAAGCTGAA+TGG | + | chr5.3:55930995-55931014 | MS.gene009881:CDS | 40.0% | |
| TAGTAGACGGATAACAAGCT+TGG | + | chr5.3:55929507-55929526 | MS.gene009881:CDS | 40.0% | |
| TATATTGTAGGCGCGCATTT+GGG | + | chr5.3:55930768-55930787 | MS.gene009881:intron | 40.0% | |
| TCTGTTCATTTGGAAGCCAA+AGG | + | chr5.3:55931909-55931928 | MS.gene009881:CDS | 40.0% | |
| TGAGAAGGTTTACGAGAAAG+TGG | + | chr5.3:55929698-55929717 | MS.gene009881:CDS | 40.0% | |
| TGCATCACCATTCCTATGAT+TGG | - | chr5.3:55930573-55930592 | None:intergenic | 40.0% | |
| TGGGAAAAAAAGGGGATCTT+AGG | + | chr5.3:55928348-55928367 | MS.gene009881:intron | 40.0% | |
| TGTTCCAGGCTATTGATCAT+AGG | + | chr5.3:55929383-55929402 | MS.gene009881:intron | 40.0% | |
| TTATAGGTGTGTAAGAAGCC+TGG | + | chr5.3:55927411-55927430 | MS.gene009881:intron | 40.0% | |
| TTGAACCTACACAAAGTGGT+GGG | + | chr5.3:55931512-55931531 | MS.gene009881:intron | 40.0% | |
| ! | AATGAGAACTTTGGGGAAAG+AGG | - | chr5.3:55927110-55927129 | None:intergenic | 40.0% |
| ! | ACCGTCTCAGATTTTTCCTT+TGG | - | chr5.3:55931928-55931947 | None:intergenic | 40.0% |
| ! | AGGTTTAGAGGTTTTTCTGC+GGG | - | chr5.3:55928881-55928900 | None:intergenic | 40.0% |
| ! | CATTCAGTCTGCTTGGATTT+TGG | - | chr5.3:55932072-55932091 | None:intergenic | 40.0% |
| ! | GAGAGTTTTTGCTCGAACTT+AGG | + | chr5.3:55929234-55929253 | MS.gene009881:intron | 40.0% |
| ! | GGTGTTTGATAACATTGCGT+CGG | - | chr5.3:55928014-55928033 | None:intergenic | 40.0% |
| ! | GTCGACTCACAGATTGAAAT+CGG | - | chr5.3:55927908-55927927 | None:intergenic | 40.0% |
| ! | GTTGAAAAGTGAGTGTTGCT+AGG | + | chr5.3:55931581-55931600 | MS.gene009881:intron | 40.0% |
| ! | TAACTACGAAGGGCATGTAA+TGG | - | chr5.3:55930373-55930392 | None:intergenic | 40.0% |
| ! | TGGTCTGGAATCACACATTT+GGG | - | chr5.3:55929460-55929479 | None:intergenic | 40.0% |
| ! | TTGGTCTGGAATCACACATT+TGG | - | chr5.3:55929461-55929480 | None:intergenic | 40.0% |
| !! | AGTTGTACTGATTTGGAGAC+TGG | + | chr5.3:55929927-55929946 | MS.gene009881:CDS | 40.0% |
| !! | CAGCTTTGAAGGGTGTTAAA+TGG | - | chr5.3:55930993-55931012 | None:intergenic | 40.0% |
| !! | TGGAGTATGGGATTTTGAGA+AGG | + | chr5.3:55929683-55929702 | MS.gene009881:CDS | 40.0% |
| !! | TTAGAGTCACTTGCTGTTGT+TGG | + | chr5.3:55931126-55931145 | MS.gene009881:CDS | 40.0% |
| AAGCTTATTCACCGGACTGA+TGG | - | chr5.3:55931259-55931278 | None:intergenic | 45.0% | |
| AATGGTTCCATCTGAGGATG+CGG | - | chr5.3:55929907-55929926 | None:intergenic | 45.0% | |
| ACGTCTACATCCGTGTTTAC+AGG | - | chr5.3:55927789-55927808 | None:intergenic | 45.0% | |
| ACTATGCACAATTTCTCGGC+TGG | - | chr5.3:55930956-55930975 | None:intergenic | 45.0% | |
| ACTTAGGCTTACCGTAGGAA+TGG | - | chr5.3:55928938-55928957 | None:intergenic | 45.0% | |
| AGATACAAGTACAGGGCAGT+TGG | + | chr5.3:55931203-55931222 | MS.gene009881:CDS | 45.0% | |
| CAAAGCTGAATGGGATCCAA+AGG | + | chr5.3:55931005-55931024 | MS.gene009881:CDS | 45.0% | |
| CCACAAGTCAAAAGGATGTC+TGG | - | chr5.3:55930653-55930672 | None:intergenic | 45.0% | |
| CCATGTTTGGGAAGGAATTG+AGG | + | chr5.3:55927670-55927689 | MS.gene009881:intron | 45.0% | |
| CCGATGTGGACAATTCAAAG+TGG | - | chr5.3:55928827-55928846 | None:intergenic | 45.0% | |
| CCTCAATTCCTTCCCAAACA+TGG | - | chr5.3:55927673-55927692 | None:intergenic | 45.0% | |
| CGTGGATGAAGCTTATTCAC+CGG | - | chr5.3:55931267-55931286 | None:intergenic | 45.0% | |
| CTATATTGTAGGCGCGCATT+TGG | + | chr5.3:55930767-55930786 | MS.gene009881:intron | 45.0% | |
| CTATGCACAATTTCTCGGCT+GGG | - | chr5.3:55930955-55930974 | None:intergenic | 45.0% | |
| CTGAGAAGAAACGTGGTAAG+AGG | + | chr5.3:55931989-55932008 | MS.gene009881:CDS | 45.0% | |
| CTGGTTGCATTGGATTGCAA+TGG | - | chr5.3:55930634-55930653 | None:intergenic | 45.0% | |
| GAACATCACAACCATCAGTC+CGG | + | chr5.3:55931245-55931264 | MS.gene009881:CDS | 45.0% | |
| GAATGACTTAGGCTTACCGT+AGG | - | chr5.3:55928943-55928962 | None:intergenic | 45.0% | |
| GACATGCGGAGACAGTAAAA+CGG | - | chr5.3:55930267-55930286 | None:intergenic | 45.0% | |
| GACCCTGTAAATGACACAGA+AGG | - | chr5.3:55930540-55930559 | None:intergenic | 45.0% | |
| GACTGATGGTTGTGATGTTC+GGG | - | chr5.3:55931245-55931264 | None:intergenic | 45.0% | |
| GATATGCGTCACTTAGAAGC+TGG | + | chr5.3:55930790-55930809 | MS.gene009881:CDS | 45.0% | |
| GCTAAGACATGCCATTCCTA+CGG | + | chr5.3:55928924-55928943 | MS.gene009881:CDS | 45.0% | |
| GGAAAAGCTGAGAAGAAACG+TGG | + | chr5.3:55931982-55932001 | MS.gene009881:CDS | 45.0% | |
| GGACTGATGGTTGTGATGTT+CGG | - | chr5.3:55931246-55931265 | None:intergenic | 45.0% | |
| GGATGTTATTCTTCGTAGGG+TGG | - | chr5.3:55929537-55929556 | None:intergenic | 45.0% | |
| GGGGAAAAAGCCTGTAAACA+CGG | + | chr5.3:55927776-55927795 | MS.gene009881:intron | 45.0% | |
| GTCTCCTATGATCAATAGCC+TGG | - | chr5.3:55929390-55929409 | None:intergenic | 45.0% | |
| GTGATGATATCCTGGCAACT+GGG | + | chr5.3:55931286-55931305 | MS.gene009881:CDS | 45.0% | |
| TAACAACACGCTTGTGCTCA+AGG | - | chr5.3:55930831-55930850 | None:intergenic | 45.0% | |
| TAACCTTATCTCCCGACAAC+AGG | - | chr5.3:55929558-55929577 | None:intergenic | 45.0% | |
| TAAGAAGCCTGGTCATGAAG+CGG | + | chr5.3:55927422-55927441 | MS.gene009881:CDS | 45.0% | |
| TAGGAATGGCATGTCTTAGC+TGG | - | chr5.3:55928924-55928943 | None:intergenic | 45.0% | |
| TATGTCCCACCACTTTGTGT+AGG | - | chr5.3:55931520-55931539 | None:intergenic | 45.0% | |
| TCATCCACGTGATGATATCC+TGG | + | chr5.3:55931278-55931297 | MS.gene009881:CDS | 45.0% | |
| TCGACATGCGATCCAATCAT+AGG | + | chr5.3:55930558-55930577 | MS.gene009881:CDS | 45.0% | |
| TGAACCTGAATCCTGATGGA+TGG | + | chr5.3:55929967-55929986 | MS.gene009881:CDS | 45.0% | |
| TGATAACAGCGCAACTCACT+TGG | - | chr5.3:55929480-55929499 | None:intergenic | 45.0% | |
| TGTAAACACGGATGTAGACG+TGG | + | chr5.3:55927788-55927807 | MS.gene009881:intron | 45.0% | |
| ! | CCATCAGGATTCAGGTTCAT+CGG | - | chr5.3:55929966-55929985 | None:intergenic | 45.0% |
| ! | GGTTTAGAGGTTTTTCTGCG+GGG | - | chr5.3:55928880-55928899 | None:intergenic | 45.0% |
| ! | GTGAATCTAGGATAGTGTGG+CGG | - | chr5.3:55928078-55928097 | None:intergenic | 45.0% |
| ! | TGGATCCCATTCAGCTTTGA+AGG | - | chr5.3:55931004-55931023 | None:intergenic | 45.0% |
| !! | AGAAGAAGAAGAAGCACTCG+AGG | + | chr5.3:55927168-55927187 | MS.gene009881:CDS | 45.0% |
| !! | GGATCCCATTCAGCTTTGAA+GGG | - | chr5.3:55931003-55931022 | None:intergenic | 45.0% |
| !! | TACTGAGCATGGTGTTGTTC+CGG | + | chr5.3:55928852-55928871 | MS.gene009881:CDS | 45.0% |
| !!! | CCAGACATCCTTTTGACTTG+TGG | + | chr5.3:55930650-55930669 | MS.gene009881:CDS | 45.0% |
| !!! | GGATTTTGGCTTCTTGAGCT+TGG | - | chr5.3:55932058-55932077 | None:intergenic | 45.0% |
| AAGAAGCCTGGTCATGAAGC+GGG | + | chr5.3:55927423-55927442 | MS.gene009881:CDS | 50.0% | |
| ATTGTCTCGCTGCTCGACAA+AGG | + | chr5.3:55932095-55932114 | MS.gene009881:CDS | 50.0% | |
| CAATCTGTGAGTCGACTGTG+TGG | + | chr5.3:55927912-55927931 | MS.gene009881:intron | 50.0% | |
| CATCCTGTTGTCGGGAGATA+AGG | + | chr5.3:55929552-55929571 | MS.gene009881:CDS | 50.0% | |
| CATGCCATCCATCAGGATTC+AGG | - | chr5.3:55929974-55929993 | None:intergenic | 50.0% | |
| CCGATGAACCTGAATCCTGA+TGG | + | chr5.3:55929963-55929982 | MS.gene009881:CDS | 50.0% | |
| CGTGATGATATCCTGGCAAC+TGG | + | chr5.3:55931285-55931304 | MS.gene009881:CDS | 50.0% | |
| CTTGTGCTCAAGGCTACAGA+GGG | - | chr5.3:55930821-55930840 | None:intergenic | 50.0% | |
| GTCTATTCCGCATCCTCAGA+TGG | + | chr5.3:55929897-55929916 | MS.gene009881:CDS | 50.0% | |
| GTTGCCAGGATATCATCACG+TGG | - | chr5.3:55931285-55931304 | None:intergenic | 50.0% | |
| TTGAAACCCGCTTCATGACC+AGG | - | chr5.3:55927432-55927451 | None:intergenic | 50.0% | |
| TTTACTAGGGGCCAAACACC+TGG | + | chr5.3:55930138-55930157 | MS.gene009881:intron | 50.0% | |
| ! | AGGATTCAGGTTCATCGGAG+AGG | - | chr5.3:55929961-55929980 | None:intergenic | 50.0% |
| ! | GGAAAAATCTGAGACGGTCG+AGG | + | chr5.3:55931930-55931949 | MS.gene009881:CDS | 50.0% |
| ! | GGTCATGAAGCGGGTTTCAA+GGG | + | chr5.3:55927432-55927451 | MS.gene009881:CDS | 50.0% |
| ! | TGAGAAAGGTCTTGTGCTCG+TGG | + | chr5.3:55930190-55930209 | MS.gene009881:CDS | 50.0% |
| ! | TGGTCATGAAGCGGGTTTCA+AGG | + | chr5.3:55927431-55927450 | MS.gene009881:CDS | 50.0% |
| !! | AGAAGAAGAAGCACTCGAGG+AGG | + | chr5.3:55927171-55927190 | MS.gene009881:CDS | 50.0% |
| !! | GCAGTTGGTAGCAGAAGTCA+TGG | + | chr5.3:55931218-55931237 | MS.gene009881:CDS | 50.0% |
| ACAGCGCAACTCACTTGGTC+TGG | - | chr5.3:55929475-55929494 | None:intergenic | 55.0% | |
| ACCTAGAACTCCCAGTTGCC+AGG | - | chr5.3:55931299-55931318 | None:intergenic | 55.0% | |
| ACGGATGTAGACGTGGACAC+CGG | + | chr5.3:55927795-55927814 | MS.gene009881:intron | 55.0% | |
| CATCGGGTCACTACTGAGCA+TGG | + | chr5.3:55928841-55928860 | MS.gene009881:CDS | 55.0% | |
| GCTTGTGCTCAAGGCTACAG+AGG | - | chr5.3:55930822-55930841 | None:intergenic | 55.0% | |
| GTGCTCGTGGCCGATAACTT+TGG | + | chr5.3:55930203-55930222 | MS.gene009881:CDS | 55.0% | |
| TCCTGGCAACTGGGAGTTCT+AGG | + | chr5.3:55931295-55931314 | MS.gene009881:CDS | 55.0% | |
| TGCTCAGTAGTGACCCGATG+TGG | - | chr5.3:55928841-55928860 | None:intergenic | 55.0% | |
| ! | ATCTGAGACGGTCGAGGAGA+AGG | + | chr5.3:55931936-55931955 | MS.gene009881:CDS | 55.0% |
| TGACCTTGAGGAGACTCGCG+CGG | - | chr5.3:55930061-55930080 | None:intergenic | 60.0% | |
| ! | GAGGTTTTTCTGCGGGGTGC+CGG | - | chr5.3:55928874-55928893 | None:intergenic | 60.0% |
| TGACCGCGCGAGTCTCCTCA+AGG | + | chr5.3:55930055-55930074 | MS.gene009881:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 55927085 | 55932128 | 55927085 | ID=MS.gene009881 |
| chr5.3 | mRNA | 55927085 | 55932128 | 55927085 | ID=MS.gene009881.t1;Parent=MS.gene009881 |
| chr5.3 | exon | 55927085 | 55927315 | 55927085 | ID=MS.gene009881.t1.exon1;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55927085 | 55927315 | 55927085 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55927417 | 55927507 | 55927417 | ID=MS.gene009881.t1.exon2;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55927417 | 55927507 | 55927417 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55928818 | 55928945 | 55928818 | ID=MS.gene009881.t1.exon3;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55928818 | 55928945 | 55928818 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55929451 | 55929573 | 55929451 | ID=MS.gene009881.t1.exon4;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55929451 | 55929573 | 55929451 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55929672 | 55929760 | 55929672 | ID=MS.gene009881.t1.exon5;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55929672 | 55929760 | 55929672 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55929872 | 55929992 | 55929872 | ID=MS.gene009881.t1.exon6;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55929872 | 55929992 | 55929872 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55930146 | 55930237 | 55930146 | ID=MS.gene009881.t1.exon7;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55930146 | 55930237 | 55930146 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55930556 | 55930685 | 55930556 | ID=MS.gene009881.t1.exon8;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55930556 | 55930685 | 55930556 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55930778 | 55931026 | 55930778 | ID=MS.gene009881.t1.exon9;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55930778 | 55931026 | 55930778 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55931120 | 55931316 | 55931120 | ID=MS.gene009881.t1.exon10;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55931120 | 55931316 | 55931120 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| chr5.3 | exon | 55931906 | 55932128 | 55931906 | ID=MS.gene009881.t1.exon11;Parent=MS.gene009881.t1 |
| chr5.3 | CDS | 55931906 | 55932128 | 55931906 | ID=cds.MS.gene009881.t1;Parent=MS.gene009881.t1 |
| Gene Sequence |
| Protein sequence |
