Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27972.t1 | XP_003630019.2 | 99.6 | 1089 | 4 | 0 | 1 | 1089 | 1 | 1089 | 0.00E+00 | 2181.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27972.t1 | Q6QNU4 | 89.8 | 1090 | 110 | 1 | 1 | 1089 | 1 | 1090 | 0.0e+00 | 2012.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27972.t1 | G7L9M1 | 99.6 | 1089 | 4 | 0 | 1 | 1089 | 1 | 1089 | 0.0e+00 | 2181.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene27972 | 0.883821 | 3.24E-71 | -1.69E-46 |
| MS.gene049404 | MS.gene27972 | 0.834268 | 3.31E-56 | -1.69E-46 |
| MS.gene049824 | MS.gene27972 | 0.80876 | 2.64E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene27972 | 0.803824 | 2.90E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene27972 | 0.80201 | 6.87E-49 | -1.69E-46 |
| MS.gene05016 | MS.gene27972 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene27972 | 0.815688 | 8.13E-52 | -1.69E-46 |
| MS.gene051744 | MS.gene27972 | 0.803882 | 2.82E-49 | -1.69E-46 |
| MS.gene051859 | MS.gene27972 | 0.823507 | 1.33E-53 | -1.69E-46 |
| MS.gene052020 | MS.gene27972 | 0.842718 | 2.18E-58 | -1.69E-46 |
| MS.gene052323 | MS.gene27972 | 0.813375 | 2.64E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene27972 | 0.845431 | 4.08E-59 | -1.69E-46 |
| MS.gene052612 | MS.gene27972 | 0.85477 | 9.87E-62 | -1.69E-46 |
| MS.gene053226 | MS.gene27972 | 0.82588 | 3.68E-54 | -1.69E-46 |
| MS.gene053998 | MS.gene27972 | 0.806767 | 7.01E-50 | -1.69E-46 |
| MS.gene05447 | MS.gene27972 | 0.808246 | 3.40E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene27972 | 0.801612 | 8.29E-49 | -1.69E-46 |
| MS.gene055512 | MS.gene27972 | 0.830384 | 3.03E-55 | -1.69E-46 |
| MS.gene056050 | MS.gene27972 | 0.811632 | 6.35E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene27972 | 0.837961 | 3.82E-57 | -1.69E-46 |
| MS.gene056366 | MS.gene27972 | 0.800391 | 1.47E-48 | -1.69E-46 |
| MS.gene056553 | MS.gene27972 | 0.816851 | 4.47E-52 | -1.69E-46 |
| MS.gene057869 | MS.gene27972 | 0.813525 | 2.45E-51 | -1.69E-46 |
| MS.gene058010 | MS.gene27972 | 0.805016 | 1.64E-49 | -1.69E-46 |
| MS.gene058829 | MS.gene27972 | 0.80833 | 3.27E-50 | -1.69E-46 |
| MS.gene059154 | MS.gene27972 | 0.850805 | 1.34E-60 | -1.69E-46 |
| MS.gene05978 | MS.gene27972 | 0.825391 | 4.81E-54 | -1.69E-46 |
| MS.gene060355 | MS.gene27972 | 0.812963 | 3.25E-51 | -1.69E-46 |
| MS.gene060568 | MS.gene27972 | 0.803385 | 3.58E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene27972 | 0.83583 | 1.34E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030901 | MS.gene27972 | PPI |
| MS.gene88786 | MS.gene27972 | PPI |
| MS.gene53501 | MS.gene27972 | PPI |
| MS.gene27972 | MS.gene009881 | PPI |
| MS.gene43798 | MS.gene27972 | PPI |
| MS.gene44895 | MS.gene27972 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27972.t1 | MTR_8g089380 | 99.633 | 1089 | 4 | 0 | 1 | 1089 | 1 | 1089 | 0.0 | 2238 |
| MS.gene27972.t1 | MTR_1g115525 | 23.352 | 1229 | 752 | 37 | 3 | 1085 | 1 | 1185 | 1.26e-66 | 245 |
| MS.gene27972.t1 | MTR_4g115810 | 23.102 | 1251 | 763 | 39 | 3 | 1085 | 1 | 1220 | 3.95e-62 | 232 |
| MS.gene27972.t1 | MTR_4g115500 | 22.843 | 1252 | 765 | 40 | 3 | 1085 | 1 | 1220 | 1.02e-60 | 227 |
| MS.gene27972.t1 | MTR_6g013290 | 23.605 | 699 | 459 | 22 | 431 | 1084 | 30 | 698 | 1.86e-32 | 135 |
| MS.gene27972.t1 | MTR_7g107350 | 21.996 | 491 | 291 | 16 | 321 | 729 | 441 | 921 | 1.79e-21 | 101 |
| MS.gene27972.t1 | MTR_7g107350 | 21.996 | 491 | 291 | 16 | 321 | 729 | 441 | 921 | 1.94e-21 | 101 |
| MS.gene27972.t1 | MTR_7g107350 | 21.996 | 491 | 291 | 16 | 321 | 729 | 267 | 747 | 1.96e-21 | 101 |
| MS.gene27972.t1 | MTR_7g107350 | 21.996 | 491 | 291 | 16 | 321 | 729 | 441 | 921 | 2.35e-21 | 101 |
| MS.gene27972.t1 | MTR_6g461810 | 28.521 | 284 | 173 | 9 | 778 | 1041 | 1122 | 1395 | 1.30e-16 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27972.t1 | AT4G05420 | 89.440 | 1089 | 114 | 1 | 1 | 1089 | 1 | 1088 | 0.0 | 2023 |
| MS.gene27972.t1 | AT4G21100 | 87.052 | 1089 | 140 | 1 | 1 | 1089 | 1 | 1088 | 0.0 | 1969 |
| MS.gene27972.t1 | AT4G05420 | 87.511 | 1089 | 114 | 2 | 1 | 1089 | 1 | 1067 | 0.0 | 1968 |
| MS.gene27972.t1 | AT3G55220 | 22.632 | 1246 | 762 | 38 | 3 | 1084 | 1 | 1208 | 1.71e-66 | 245 |
| MS.gene27972.t1 | AT3G55200 | 22.632 | 1246 | 762 | 38 | 3 | 1084 | 1 | 1208 | 1.71e-66 | 245 |
| MS.gene27972.t1 | AT3G55200 | 22.632 | 1246 | 762 | 38 | 3 | 1084 | 1 | 1208 | 1.71e-66 | 245 |
| MS.gene27972.t1 | AT3G55200 | 22.632 | 1246 | 762 | 38 | 3 | 1084 | 1 | 1208 | 1.71e-66 | 245 |
| MS.gene27972.t1 | AT3G11960 | 21.622 | 592 | 359 | 20 | 306 | 810 | 375 | 948 | 2.12e-26 | 117 |
| MS.gene27972.t1 | AT3G11960 | 21.622 | 592 | 359 | 20 | 306 | 810 | 433 | 1006 | 2.21e-26 | 117 |
| MS.gene27972.t1 | AT3G11960 | 21.622 | 592 | 359 | 20 | 306 | 810 | 433 | 1006 | 2.35e-26 | 117 |
| MS.gene27972.t1 | AT3G11960 | 21.622 | 592 | 359 | 20 | 306 | 810 | 433 | 1006 | 2.35e-26 | 117 |
| MS.gene27972.t1 | AT5G51660 | 25.753 | 299 | 190 | 9 | 762 | 1041 | 1104 | 1389 | 4.05e-14 | 78.2 |
Find 242 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTTCTGCAGTCTATTT+TGG | 0.124172 | 4.4:+11868422 | MS.gene27972:intron |
| CCACTTGACACTTATGAATA+TGG | 0.189610 | 4.4:+11877018 | MS.gene27972:CDS |
| CTTGGAAAGGTATGTCAATT+TGG | 0.198188 | 4.4:+11873302 | MS.gene27972:CDS |
| CAGATTCCAACTGTTATATT+TGG | 0.208983 | 4.4:+11877970 | MS.gene27972:CDS |
| CTCTGTGGTGTGCTTATTAT+TGG | 0.209216 | 4.4:+11871913 | MS.gene27972:CDS |
| GTTATATTTGGCACCATTAA+TGG | 0.212435 | 4.4:+11877982 | MS.gene27972:CDS |
| GGCACCATTAATGGTGTTAT+TGG | 0.214754 | 4.4:+11877991 | MS.gene27972:CDS |
| TACTGCTTGAACGCGTTTAA+TGG | 0.225069 | 4.4:+11877307 | MS.gene27972:CDS |
| CACTTGGTTTACCTCGAAAT+TGG | 0.228300 | 4.4:+11875795 | MS.gene27972:CDS |
| GATAATGCATTTGTTTATAT+TGG | 0.258019 | 4.4:+11872439 | MS.gene27972:CDS |
| TACCCCAATAACACCATTAA+TGG | 0.267127 | 4.4:-11877995 | None:intergenic |
| GCACCATTAATGGTGTTATT+GGG | 0.269623 | 4.4:+11877992 | MS.gene27972:CDS |
| AACATATGAGGTTGCTCTTA+AGG | 0.276914 | 4.4:+11871810 | MS.gene27972:CDS |
| GCTTGAGGAGCTCCAAGTTT+TGG | 0.285324 | 4.4:+11870920 | MS.gene27972:CDS |
| CTTGTATGACGGTTTGTTTA+AGG | 0.292473 | 4.4:+11869497 | MS.gene27972:CDS |
| TTGGAAAGGTATGTCAATTT+GGG | 0.296263 | 4.4:+11873303 | MS.gene27972:CDS |
| GTTATTCCCTTTGACAATAA+AGG | 0.301699 | 4.4:+11869634 | MS.gene27972:CDS |
| CATCTCCTTGTTAATCTATA+AGG | 0.308733 | 4.4:+11877495 | MS.gene27972:CDS |
| GCTCCTTTGTGATGAGATTA+AGG | 0.312120 | 4.4:-11875971 | None:intergenic |
| GCTTACTGCTCAGGGCTTGC+AGG | 0.314406 | 4.4:+11867680 | MS.gene27972:CDS |
| CACAAAACAGTCTTGATAAT+GGG | 0.332240 | 4.4:+11871860 | MS.gene27972:CDS |
| ACGGTGCATGCCACTCATTC+AGG | 0.339662 | 4.4:-11874744 | None:intergenic |
| GTCTCAAAATAGAGCCCCTT+GGG | 0.342415 | 4.4:+11872383 | MS.gene27972:CDS |
| GTTCTTCTTTGTGCGTTTGA+AGG | 0.343825 | 4.4:+11876023 | MS.gene27972:CDS |
| GACCTTGGCCTTGCCTTTCA+AGG | 0.350635 | 4.4:-11873353 | None:intergenic |
| GAGAAAGTCCGTAGAGTAAT+AGG | 0.354675 | 4.4:-11876504 | None:intergenic |
| GATCCTGATTGTAGGTTGAT+TGG | 0.356316 | 4.4:+11869468 | MS.gene27972:CDS |
| CTCGGGACTATAATGCAAAT+TGG | 0.363149 | 4.4:+11877740 | MS.gene27972:CDS |
| CGAAGATAAAGATGAGTATA+TGG | 0.370628 | 4.4:+11867448 | None:intergenic |
| CAAATATAACAGTTGGAATC+TGG | 0.372665 | 4.4:-11877969 | None:intergenic |
| TCACAAAACAGTCTTGATAA+TGG | 0.375104 | 4.4:+11871859 | MS.gene27972:CDS |
| CTCATCACAAAGGAGCATTT+AGG | 0.375598 | 4.4:+11875978 | MS.gene27972:CDS |
| GGCTACAGGTGGTGGGCACT+TGG | 0.378105 | 4.4:+11875779 | MS.gene27972:CDS |
| CATATTCGCACTATTCCATT+GGG | 0.381367 | 4.4:+11876847 | MS.gene27972:CDS |
| TTCTTCTTTGTGCGTTTGAA+GGG | 0.385679 | 4.4:+11876024 | MS.gene27972:CDS |
| ATTAGCACTGCAGTATACTA+TGG | 0.389127 | 4.4:-11871944 | None:intergenic |
| AACTTGAGGAAGGTGATTAA+AGG | 0.390385 | 4.4:+11878069 | MS.gene27972:CDS |
| GAGAGTTTATCAATCGGTTT+CGG | 0.391578 | 4.4:+11877905 | MS.gene27972:CDS |
| AAATACATGGGTAGTATTCT+TGG | 0.396304 | 4.4:-11876529 | None:intergenic |
| AGCTGTACAAGTGGGTGCTC+CGG | 0.397163 | 4.4:+11877362 | MS.gene27972:CDS |
| ATCTGGCCTACGTCGGAATC+TGG | 0.399624 | 4.4:-11877952 | None:intergenic |
| CGTGTTGTTCGTAATGGAAT+AGG | 0.401088 | 4.4:+11873417 | MS.gene27972:CDS |
| TGTAACAAGCTCGGATTTCT+CGG | 0.401571 | 4.4:-11868680 | None:intergenic |
| ATTTAACATACAGCTCTGAT+TGG | 0.401669 | 4.4:-11871982 | None:intergenic |
| GATTCACTTGCTTACTGCTC+AGG | 0.403778 | 4.4:+11867671 | MS.gene27972:CDS |
| TGCTGCTAGCTGACTCTGAT+TGG | 0.409702 | 4.4:-11875901 | None:intergenic |
| ATAGTATACTGCAGTGCTAA+TGG | 0.414262 | 4.4:+11871946 | MS.gene27972:CDS |
| ATTTCTGCCATCCAGATCAA+TGG | 0.414475 | 4.4:+11869244 | MS.gene27972:intron |
| AGGCGCCACTGATGAAGAAC+GGG | 0.416102 | 4.4:+11877849 | MS.gene27972:CDS |
| GTATTATAGATCCTGATTGT+AGG | 0.416954 | 4.4:+11869460 | MS.gene27972:CDS |
| TATTTACTTGGTGACCATAC+AGG | 0.421469 | 4.4:+11872166 | MS.gene27972:CDS |
| GGTCAGGTTGTGACTTGCTC+TGG | 0.421885 | 4.4:+11873372 | MS.gene27972:CDS |
| AGAAGTAAAGCATGCCCAAC+TGG | 0.424429 | 4.4:+11875833 | MS.gene27972:CDS |
| CGAGTTAACAGATAGGAAAA+AGG | 0.425998 | 4.4:+11876464 | MS.gene27972:CDS |
| CACCAATGGGATTAATGTCT+AGG | 0.426916 | 4.4:-11875872 | None:intergenic |
| ATTTATCAATTTACCTTGGT+TGG | 0.430696 | 4.4:-11877129 | None:intergenic |
| TTTCTGCCATCCAGATCAAT+GGG | 0.431810 | 4.4:+11869245 | MS.gene27972:intron |
| TCATATTCGCACTATTCCAT+TGG | 0.434143 | 4.4:+11876846 | MS.gene27972:CDS |
| ATTCACGAGTACCGTCTTCC+CGG | 0.436927 | 4.4:-11877381 | None:intergenic |
| CCACTCATTCAGGAGCTCTC+TGG | 0.439072 | 4.4:-11874734 | None:intergenic |
| TCCCTACGTGTTGTTCGTAA+TGG | 0.439345 | 4.4:+11873411 | MS.gene27972:CDS |
| GTTTATATTGGTTCAAGCTA+TGG | 0.441908 | 4.4:+11872451 | MS.gene27972:CDS |
| AGCTGTCCTTTATTGTCAAA+GGG | 0.442075 | 4.4:-11869640 | None:intergenic |
| TTGGACATTAAATTTCTGTA+TGG | 0.443919 | 4.4:+11870939 | MS.gene27972:CDS |
| ATTCAGGAGCTCTCTGGTTG+TGG | 0.450481 | 4.4:-11874728 | None:intergenic |
| TGGAATAGGTATCAATGAAC+AGG | 0.450725 | 4.4:+11873431 | MS.gene27972:CDS |
| AACTGAAACTTCCATCGCCT+TGG | 0.450793 | 4.4:-11878226 | None:intergenic |
| ATAGGAAGACCAACGGATAA+TGG | 0.452314 | 4.4:+11869284 | MS.gene27972:CDS |
| TGGACACCACGGGCACATAC+TGG | 0.458407 | 4.4:+11877417 | MS.gene27972:CDS |
| CTGATATGAAGTCAAAAGTC+TGG | 0.460000 | 4.4:-11876990 | None:intergenic |
| CAGGCAATTACAAAAGCCTA+TGG | 0.460282 | 4.4:+11872118 | MS.gene27972:intron |
| TTGCTATGTGCCCTTGGTGA+TGG | 0.460806 | 4.4:+11876405 | MS.gene27972:CDS |
| GTGCCCGTGGTGTCCACATT+CGG | 0.461850 | 4.4:-11877410 | None:intergenic |
| TCTTACTTGCTATGTGCCCT+TGG | 0.462622 | 4.4:+11876399 | MS.gene27972:CDS |
| GACTTGCTCTGGAGCTTACA+AGG | 0.466419 | 4.4:+11873383 | MS.gene27972:CDS |
| GAAATTTAATGTCCAAAACT+TGG | 0.469071 | 4.4:-11870932 | None:intergenic |
| AGAACCACGATAGTTGGCTT+TGG | 0.470356 | 4.4:-11870966 | None:intergenic |
| AACTATCGTGGTTCTTTACC+AGG | 0.475287 | 4.4:+11870974 | MS.gene27972:CDS |
| GGTCAGATGCAGCAAATACA+TGG | 0.476544 | 4.4:-11876542 | None:intergenic |
| AAAGAAGGTGAGCTTACTAT+TGG | 0.478013 | 4.4:+11876799 | MS.gene27972:CDS |
| AATCTTCAGCCTGATTCAAA+AGG | 0.479108 | 4.4:+11873264 | MS.gene27972:CDS |
| AGTCAACTCTTCTACTCTCT+TGG | 0.479215 | 4.4:-11878259 | None:intergenic |
| CCGTCATGTTAAAACATATG+AGG | 0.485421 | 4.4:+11871798 | MS.gene27972:CDS |
| GGGGATGTTTCTGATCGTAT+AGG | 0.485443 | 4.4:+11869266 | MS.gene27972:CDS |
| AGGTTCTTATGTGGAAGTCT+TGG | 0.486834 | 4.4:+11873284 | MS.gene27972:CDS |
| TGGGGCTGATTTATTGATAC+CGG | 0.489580 | 4.4:+11871879 | MS.gene27972:CDS |
| GTAGACTAAGCAACCCTGTA+TGG | 0.490396 | 4.4:-11872180 | None:intergenic |
| GCATGAGGAAGGTGCTATTG+AGG | 0.491604 | 4.4:+11877711 | MS.gene27972:intron |
| GCTGTACAAGTGGGTGCTCC+GGG | 0.493964 | 4.4:+11877363 | MS.gene27972:CDS |
| GAGATTGAGGTCCTGAGGAC+TGG | 0.494652 | 4.4:-11867532 | None:intergenic |
| TGCACGGCGGATATGTCATC+AGG | 0.497183 | 4.4:+11876876 | MS.gene27972:CDS |
| GATGGTTCTAGATATTTACT+TGG | 0.497991 | 4.4:+11872154 | MS.gene27972:CDS |
| GTGCTATTGAGGAGAGAGCT+CGG | 0.499902 | 4.4:+11877722 | MS.gene27972:CDS |
| CTGGAAGAAACTGAGATTGA+GGG | 0.502406 | 4.4:+11873726 | MS.gene27972:CDS |
| GAGCTGTCCTTTATTGTCAA+AGG | 0.502418 | 4.4:-11869641 | None:intergenic |
| AAATCAAACCTGGGTTGCAT+TGG | 0.503640 | 4.4:-11874794 | None:intergenic |
| TGATCTCAAACGCAGTAAGA+TGG | 0.507168 | 4.4:+11878194 | MS.gene27972:CDS |
| GCTGCTAGCTGACTCTGATT+GGG | 0.509055 | 4.4:-11875900 | None:intergenic |
| TGCCTAGACATTAATCCCAT+TGG | 0.509950 | 4.4:+11875870 | MS.gene27972:CDS |
| CACTTATAAAACTTACAACC+AGG | 0.512183 | 4.4:-11873668 | None:intergenic |
| GAAAAGCAGCAGAGTTGAAA+GGG | 0.512702 | 4.4:-11876641 | None:intergenic |
| TATAAACAAATGCATTATCA+AGG | 0.513605 | 4.4:-11872435 | None:intergenic |
| AGGAAGGTGATTAAAGGCGT+TGG | 0.513962 | 4.4:+11878075 | MS.gene27972:CDS |
| TTACTACTATAAATCACAGT+TGG | 0.517519 | 4.4:-11876567 | None:intergenic |
| TATGTCATCAGGAGCAAACT+AGG | 0.520708 | 4.4:+11876887 | MS.gene27972:CDS |
| TGAAAGGCAAGGCCAAGGTC+AGG | 0.521844 | 4.4:+11873356 | MS.gene27972:CDS |
| ATGAGATTTCATACTCCAGT+TGG | 0.522760 | 4.4:-11875848 | None:intergenic |
| GCTGGAAGAAACTGAGATTG+AGG | 0.523648 | 4.4:+11873725 | MS.gene27972:CDS |
| ATGTATTTGCTGCATCTGAC+CGG | 0.524765 | 4.4:+11876544 | MS.gene27972:CDS |
| CACCATTAATGGTGTTATTG+GGG | 0.526170 | 4.4:+11877993 | MS.gene27972:CDS |
| ATGGTGCCAAATATAACAGT+TGG | 0.526265 | 4.4:-11877976 | None:intergenic |
| TGAGATTTCATACTCCAGTT+GGG | 0.526292 | 4.4:-11875847 | None:intergenic |
| AGTCCAATCAACCTACAATC+AGG | 0.527246 | 4.4:-11869471 | None:intergenic |
| ATTCACTTGCTTACTGCTCA+GGG | 0.529196 | 4.4:+11867672 | MS.gene27972:CDS |
| ACCTTGGAGAGTTTATCAAT+CGG | 0.530210 | 4.4:+11877899 | MS.gene27972:CDS |
| CAGAGTCAGCTAGCAGCAGT+TGG | 0.530439 | 4.4:+11875906 | MS.gene27972:CDS |
| AAGACCAACGGATAATGGTC+AGG | 0.533767 | 4.4:+11869289 | MS.gene27972:CDS |
| TGCTATTGAGGAGAGAGCTC+GGG | 0.534621 | 4.4:+11877723 | MS.gene27972:CDS |
| TTCAAGCTATGGAGATTCAC+AGG | 0.534786 | 4.4:+11872462 | MS.gene27972:CDS |
| GGATGAGATTTCCAAGGCGA+TGG | 0.534862 | 4.4:+11878215 | MS.gene27972:CDS |
| AGTAAATATCTAGAACCATC+GGG | 0.535099 | 4.4:-11872151 | None:intergenic |
| GCACGGGCGAGTTAACAGAT+AGG | 0.538982 | 4.4:+11876457 | MS.gene27972:CDS |
| TTATAGTAATGTTAATCTGA+AGG | 0.539122 | 4.4:+11876602 | MS.gene27972:CDS |
| ACCACACAGAAGTCAACAAT+GGG | 0.539394 | 4.4:-11873327 | None:intergenic |
| TGATTCAAAAGGTTCTTATG+TGG | 0.540128 | 4.4:+11873275 | MS.gene27972:CDS |
| TACTATAAATCACAGTTGGC+CGG | 0.540250 | 4.4:-11876563 | None:intergenic |
| CTTATAGATTAACAAGGAGA+TGG | 0.540637 | 4.4:-11877494 | None:intergenic |
| TAGGCATCAGTAGAACTTCA+AGG | 0.541758 | 4.4:+11873591 | MS.gene27972:intron |
| CGGGGTCGTCTTGAAGTGGC+TGG | 0.542845 | 4.4:+11877868 | MS.gene27972:CDS |
| CAGGAGTGAGTAACGTTGGT+AGG | 0.543361 | 4.4:-11867495 | None:intergenic |
| TGCTCTGGAGCTTACAAGGA+TGG | 0.543423 | 4.4:+11873387 | MS.gene27972:CDS |
| GGTCTCAAAATAGAGCCCCT+TGG | 0.545517 | 4.4:+11872382 | MS.gene27972:CDS |
| ACAACCAGGAAAGTGTCAAA+AGG | 0.545952 | 4.4:-11873654 | None:intergenic |
| AATGAATCTCGAGGATGAGC+TGG | 0.549604 | 4.4:+11873707 | MS.gene27972:CDS |
| AGTTTAGCGATTGCAAAAGA+AGG | 0.550027 | 4.4:+11876784 | MS.gene27972:intron |
| TGGTAAAGAACCACGATAGT+TGG | 0.550533 | 4.4:-11870972 | None:intergenic |
| AGCACACCACAGAGTGGTGG+GGG | 0.551042 | 4.4:-11871904 | None:intergenic |
| ATTGGACTCCACTTGTATGA+CGG | 0.551218 | 4.4:+11869486 | MS.gene27972:CDS |
| AGAAGCTTCAGTCAAACTTG+AGG | 0.552351 | 4.4:+11878055 | MS.gene27972:CDS |
| GTTTACCTCGAAATTGGAGA+TGG | 0.552837 | 4.4:+11875801 | MS.gene27972:CDS |
| GTAGAACTTCAAGGTATCAA+AGG | 0.553027 | 4.4:+11873600 | MS.gene27972:CDS |
| GTAGCAATTCTTCCATATAA+CGG | 0.553139 | 4.4:-11868450 | None:intergenic |
| AGCAAGTCACAACCTGACCT+TGG | 0.554672 | 4.4:-11873368 | None:intergenic |
| AAGGTGATTAAAGGCGTTGG+AGG | 0.556474 | 4.4:+11878078 | MS.gene27972:CDS |
| AATACCTGACCATTATCCGT+TGG | 0.558143 | 4.4:-11869293 | None:intergenic |
| GAGGACTCAGCCACGAGCAG+TGG | 0.559645 | 4.4:+11878097 | MS.gene27972:CDS |
| AAGTAAATATCTAGAACCAT+CGG | 0.560049 | 4.4:-11872152 | None:intergenic |
| TGCATACCGTGTAACAAGCT+CGG | 0.560183 | 4.4:-11868689 | None:intergenic |
| GGAAAAGCAGCAGAGTTGAA+AGG | 0.560752 | 4.4:-11876642 | None:intergenic |
| ATATACCATCTCCAATTTCG+AGG | 0.562164 | 4.4:-11875806 | None:intergenic |
| GTATGAAATCGTAGATGCAA+TGG | 0.563213 | 4.4:-11872413 | None:intergenic |
| CACGTTATTATCATCTGAGA+AGG | 0.563580 | 4.4:-11877061 | None:intergenic |
| AGTCCGAATGTGGACACCAC+GGG | 0.565397 | 4.4:+11877407 | MS.gene27972:CDS |
| TCAACATAAAGTTTAAGAGA+TGG | 0.567060 | 4.4:-11876428 | None:intergenic |
| TAAGCACACCACAGAGTGGT+GGG | 0.568719 | 4.4:-11871906 | None:intergenic |
| GAACACAACCTATTACTCTA+CGG | 0.569345 | 4.4:+11876496 | MS.gene27972:CDS |
| CTGACGCGAGAATGAGATTG+AGG | 0.569460 | 4.4:-11867545 | None:intergenic |
| TAAACAAACCGTCATACAAG+TGG | 0.570098 | 4.4:-11869494 | None:intergenic |
| ATTTACTTGGTGACCATACA+GGG | 0.570110 | 4.4:+11872167 | MS.gene27972:CDS |
| TGACAATAAAGGACAGCTCA+AGG | 0.570702 | 4.4:+11869645 | MS.gene27972:CDS |
| GTTGCCGAGAAAGAGACAAA+AGG | 0.576433 | 4.4:+11877277 | MS.gene27972:CDS |
| TCTGTGTGGTAGACCTTGAA+AGG | 0.576761 | 4.4:+11873340 | MS.gene27972:CDS |
| AGCTAGCAGCAGTTGGAATG+TGG | 0.579983 | 4.4:+11875913 | MS.gene27972:CDS |
| AGAGAGTAGAAGAGTTGACT+AGG | 0.582187 | 4.4:+11878262 | MS.gene27972:CDS |
| TCCATTACGAACAACACGTA+GGG | 0.584653 | 4.4:-11873412 | None:intergenic |
| ACCGATTGATAAACTCTCCA+AGG | 0.587479 | 4.4:-11877900 | None:intergenic |
| TTTATCAATCGGTTTCGGCA+TGG | 0.590347 | 4.4:+11877910 | MS.gene27972:CDS |
| AATAACGTGTATTACTGTGT+TGG | 0.590857 | 4.4:+11877075 | MS.gene27972:CDS |
| AGCTACTGCCAATGCAACCC+AGG | 0.591282 | 4.4:+11874786 | MS.gene27972:CDS |
| CCAGAGAGCTCCTGAATGAG+TGG | 0.591702 | 4.4:+11874734 | MS.gene27972:CDS |
| AAAAGATTCAGCTGTACAAG+TGG | 0.592478 | 4.4:+11877353 | MS.gene27972:CDS |
| TATTCGCACTATTCCATTGG+GGG | 0.593012 | 4.4:+11876849 | MS.gene27972:CDS |
| CCATATTCATAAGTGTCAAG+TGG | 0.594109 | 4.4:-11877018 | None:intergenic |
| TGCAATGGAAGTCTCCCCAA+GGG | 0.594926 | 4.4:-11872398 | None:intergenic |
| TTTGTGATGAGATTAAGGTC+AGG | 0.595391 | 4.4:-11875966 | None:intergenic |
| AAGAATACATACTGCTCATG+AGG | 0.595780 | 4.4:-11878030 | None:intergenic |
| AAGTGGGTGCTCCGGGAAGA+CGG | 0.597239 | 4.4:+11877370 | MS.gene27972:CDS |
| AAGGCGCCACTGATGAAGAA+CGG | 0.598090 | 4.4:+11877848 | MS.gene27972:CDS |
| TCTTCTTTGTGCGTTTGAAG+GGG | 0.600024 | 4.4:+11876025 | MS.gene27972:CDS |
| GTCAAAAGGATCATCTGTTG+AGG | 0.600103 | 4.4:-11873640 | None:intergenic |
| CTTTATGTTGAACACAAGCA+CGG | 0.604008 | 4.4:+11876440 | MS.gene27972:CDS |
| CGTGAATTACAGTCCGAATG+TGG | 0.606634 | 4.4:+11877397 | MS.gene27972:CDS |
| GCTTTATATGTGCAAACTAG+AGG | 0.606872 | 4.4:+11877439 | MS.gene27972:CDS |
| ATCACAAAGGAGCATTTAGG+AGG | 0.610354 | 4.4:+11875981 | MS.gene27972:CDS |
| ATCGGGATCAACTCTTCCAT+AGG | 0.610920 | 4.4:-11872134 | None:intergenic |
| CTCGATGATGATGTATACCT+TGG | 0.611867 | 4.4:+11877781 | MS.gene27972:CDS |
| TTTATGTTGAACACAAGCAC+GGG | 0.617201 | 4.4:+11876441 | MS.gene27972:CDS |
| TAAGAGATGGCCATCACCAA+GGG | 0.617601 | 4.4:-11876415 | None:intergenic |
| ACTGGTAAAATTGCCGACGC+AGG | 0.618944 | 4.4:-11867514 | None:intergenic |
| GGCGATGGAAGTTTCAGTTG+AGG | 0.620659 | 4.4:+11878230 | MS.gene27972:CDS |
| TCTCAAACAGGGTGAAACAC+AGG | 0.620922 | 4.4:+11868603 | MS.gene27972:intron |
| CTTATGTGGAAGTCTTGGAA+AGG | 0.622163 | 4.4:+11873289 | MS.gene27972:CDS |
| GACCTTGAAAGGCAAGGCCA+AGG | 0.622215 | 4.4:+11873351 | MS.gene27972:CDS |
| TGGAAAGGTATGTCAATTTG+GGG | 0.626097 | 4.4:+11873304 | MS.gene27972:CDS |
| TACCACACAGAAGTCAACAA+TGG | 0.626309 | 4.4:-11873328 | None:intergenic |
| GTGGTAGACCTTGAAAGGCA+AGG | 0.626438 | 4.4:+11873345 | MS.gene27972:CDS |
| ACAAAACAGTCTTGATAATG+GGG | 0.628269 | 4.4:+11871861 | MS.gene27972:CDS |
| AATATTAGCAATGAATCTCG+AGG | 0.628669 | 4.4:+11873698 | MS.gene27972:CDS |
| AGAACGGGGTCGTCTTGAAG+TGG | 0.628760 | 4.4:+11877864 | MS.gene27972:CDS |
| GCTTCAGTCAAACTTGAGGA+AGG | 0.634483 | 4.4:+11878059 | MS.gene27972:CDS |
| GTTGATTGTGAACTGCATCA+TGG | 0.634822 | 4.4:-11873779 | None:intergenic |
| TAAATGATCTCCACTGCTCG+TGG | 0.635705 | 4.4:-11878107 | None:intergenic |
| ATAAGCACACCACAGAGTGG+TGG | 0.635800 | 4.4:-11871907 | None:intergenic |
| AAGTCTGGTCATCCAGCAAG+CGG | 0.636118 | 4.4:-11876975 | None:intergenic |
| ATACTGCTCATGAGGAAGAG+AGG | 0.637193 | 4.4:-11878022 | None:intergenic |
| ACGACCCCGTTCTTCATCAG+TGG | 0.639453 | 4.4:-11877854 | None:intergenic |
| TTAAGAGATGGCCATCACCA+AGG | 0.643603 | 4.4:-11876416 | None:intergenic |
| AACGTTACTCACTCCTGCGT+CGG | 0.644357 | 4.4:+11867501 | MS.gene27972:CDS |
| ATATTCGCACTATTCCATTG+GGG | 0.646014 | 4.4:+11876848 | MS.gene27972:CDS |
| AGAATGAGATTGAGGTCCTG+AGG | 0.647133 | 4.4:-11867537 | None:intergenic |
| TAAGATGGATGAGATTTCCA+AGG | 0.648525 | 4.4:+11878209 | MS.gene27972:CDS |
| TTCAAGGTATCAAAGGAATG+TGG | 0.648680 | 4.4:+11873607 | MS.gene27972:CDS |
| AAAGATTCAGCTGTACAAGT+GGG | 0.651626 | 4.4:+11877354 | MS.gene27972:CDS |
| GACGCAGGAGTGAGTAACGT+TGG | 0.653403 | 4.4:-11867499 | None:intergenic |
| ATGCAATGGAAGTCTCCCCA+AGG | 0.653448 | 4.4:-11872399 | None:intergenic |
| GTCAGATGCAGCAAATACAT+GGG | 0.655484 | 4.4:-11876541 | None:intergenic |
| TATGGAAGAGTTGATCCCGA+TGG | 0.657170 | 4.4:+11872136 | MS.gene27972:CDS |
| ACATTTACTGAATAGTCTGA+CGG | 0.659621 | 4.4:-11874763 | None:intergenic |
| AAGCACACCACAGAGTGGTG+GGG | 0.659719 | 4.4:-11871905 | None:intergenic |
| AACGTTGGTAGGTTTGTGAG+CGG | 0.663586 | 4.4:-11867484 | None:intergenic |
| ATAAAGCCAGTATGTGCCCG+TGG | 0.667188 | 4.4:-11877423 | None:intergenic |
| TTGTCCAAAGCCAACTATCG+TGG | 0.667457 | 4.4:+11870962 | MS.gene27972:CDS |
| CGCTTGCCAGATTCCGACGT+AGG | 0.669993 | 4.4:+11877946 | MS.gene27972:CDS |
| TGAGGAAAATGAACCAACCA+AGG | 0.671084 | 4.4:+11877116 | MS.gene27972:CDS |
| GTGGCTGGTGAGTATCACCT+TGG | 0.674283 | 4.4:+11877883 | MS.gene27972:CDS |
| ACTTACCTTATAGATTAACA+AGG | 0.677737 | 4.4:-11877500 | None:intergenic |
| GCCCATTGTTGACTTCTGTG+TGG | 0.680795 | 4.4:+11873326 | MS.gene27972:CDS |
| TGATCGTATAGGAAGACCAA+CGG | 0.681863 | 4.4:+11869277 | MS.gene27972:CDS |
| AGTTGGAATCTGGCCTACGT+CGG | 0.682964 | 4.4:-11877959 | None:intergenic |
| TGACCTTAATCTCATCACAA+AGG | 0.685342 | 4.4:+11875968 | MS.gene27972:CDS |
| TCTGCCATCCAGATCAATGG+GGG | 0.693266 | 4.4:+11869247 | MS.gene27972:intron |
| AGAAATCCGAGCTTGTTACA+CGG | 0.698318 | 4.4:+11868683 | MS.gene27972:CDS |
| CAGTCCGAATGTGGACACCA+CGG | 0.701088 | 4.4:+11877406 | MS.gene27972:CDS |
| GCACAAAGAAGAACAGATCG+AGG | 0.713582 | 4.4:-11876014 | None:intergenic |
| GCAATGGAAGTCTCCCCAAG+GGG | 0.729886 | 4.4:-11872397 | None:intergenic |
| TTCTGCCATCCAGATCAATG+GGG | 0.734840 | 4.4:+11869246 | MS.gene27972:intron |
| TTCCATTACGAACAACACGT+AGG | 0.739243 | 4.4:-11873413 | None:intergenic |
| AACTGCATATGTATTGCCTG+AGG | 0.740158 | 4.4:+11877098 | MS.gene27972:CDS |
| TCTCAAAATAGAGCCCCTTG+GGG | 0.740613 | 4.4:+11872384 | MS.gene27972:CDS |
| ATAATAAGCACACCACAGAG+TGG | 0.754539 | 4.4:-11871910 | None:intergenic |
| GGCGCCACTGATGAAGAACG+GGG | 0.758258 | 4.4:+11877850 | MS.gene27972:CDS |
| CAAGGTATACATCATCATCG+AGG | 0.761046 | 4.4:-11877780 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 11867459 | 11878293 | 11867459 | ID=MS.gene27972 |
| chr4.4 | mRNA | 11867459 | 11878293 | 11867459 | ID=MS.gene27972.t1;Parent=MS.gene27972 |
| chr4.4 | exon | 11867459 | 11867562 | 11867459 | ID=MS.gene27972.t1.exon1;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11867459 | 11867562 | 11867459 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11867653 | 11867701 | 11867653 | ID=MS.gene27972.t1.exon2;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11867653 | 11867701 | 11867653 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11868435 | 11868494 | 11868435 | ID=MS.gene27972.t1.exon3;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11868435 | 11868494 | 11868435 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11868613 | 11868704 | 11868613 | ID=MS.gene27972.t1.exon4;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11868613 | 11868704 | 11868613 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11869259 | 11869310 | 11869259 | ID=MS.gene27972.t1.exon5;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11869259 | 11869310 | 11869259 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11869456 | 11869518 | 11869456 | ID=MS.gene27972.t1.exon6;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11869456 | 11869518 | 11869456 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11869634 | 11869683 | 11869634 | ID=MS.gene27972.t1.exon7;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11869634 | 11869683 | 11869634 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11870920 | 11870995 | 11870920 | ID=MS.gene27972.t1.exon8;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11870920 | 11870995 | 11870920 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11871784 | 11871993 | 11871784 | ID=MS.gene27972.t1.exon9;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11871784 | 11871993 | 11871784 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11872121 | 11872227 | 11872121 | ID=MS.gene27972.t1.exon10;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11872121 | 11872227 | 11872121 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11872375 | 11872483 | 11872375 | ID=MS.gene27972.t1.exon11;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11872375 | 11872483 | 11872375 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11873252 | 11873452 | 11873252 | ID=MS.gene27972.t1.exon12;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11873252 | 11873452 | 11873252 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11873594 | 11873809 | 11873594 | ID=MS.gene27972.t1.exon13;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11873594 | 11873809 | 11873594 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11874697 | 11874807 | 11874697 | ID=MS.gene27972.t1.exon14;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11874697 | 11874807 | 11874697 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11875771 | 11876046 | 11875771 | ID=MS.gene27972.t1.exon15;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11875771 | 11876046 | 11875771 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11876396 | 11876670 | 11876396 | ID=MS.gene27972.t1.exon16;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11876396 | 11876670 | 11876396 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11876786 | 11877137 | 11876786 | ID=MS.gene27972.t1.exon17;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11876786 | 11877137 | 11876786 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11877232 | 11877516 | 11877232 | ID=MS.gene27972.t1.exon18;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11877232 | 11877516 | 11877232 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| chr4.4 | exon | 11877712 | 11878293 | 11877712 | ID=MS.gene27972.t1.exon19;Parent=MS.gene27972.t1 |
| chr4.4 | CDS | 11877712 | 11878293 | 11877712 | ID=cds.MS.gene27972.t1;Parent=MS.gene27972.t1 |
| Gene Sequence |
| Protein sequence |
