Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009990.t1 | XP_003615463.1 | 97.7 | 258 | 6 | 0 | 1 | 258 | 1 | 258 | 2.50E-148 | 534.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009990.t1 | O24496 | 74.4 | 258 | 66 | 0 | 1 | 258 | 1 | 258 | 1.5e-117 | 423.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009990.t1 | G7KDB9 | 97.7 | 258 | 6 | 0 | 1 | 258 | 1 | 258 | 1.8e-148 | 534.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009990 | MS.gene85269 | PPI |
| MS.gene009990 | MS.gene28327 | PPI |
| MS.gene009990 | MS.gene98732 | PPI |
| MS.gene009990 | MS.gene052004 | PPI |
| MS.gene032186 | MS.gene009990 | PPI |
| MS.gene056395 | MS.gene009990 | PPI |
| MS.gene009990 | MS.gene056597 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009990.t1 | MTR_5g068440 | 97.674 | 258 | 6 | 0 | 1 | 258 | 1 | 258 | 0.0 | 530 |
| MS.gene009990.t1 | MTR_2g099090 | 39.313 | 262 | 145 | 7 | 1 | 256 | 60 | 313 | 1.42e-50 | 168 |
| MS.gene009990.t1 | MTR_2g099090 | 39.313 | 262 | 145 | 7 | 1 | 256 | 76 | 329 | 1.56e-50 | 168 |
| MS.gene009990.t1 | MTR_4g068100 | 39.231 | 260 | 144 | 7 | 3 | 256 | 2 | 253 | 2.21e-50 | 166 |
| MS.gene009990.t1 | MTR_4g068100 | 38.931 | 262 | 146 | 7 | 1 | 256 | 62 | 315 | 5.89e-50 | 166 |
| MS.gene009990.t1 | MTR_4g068100 | 39.149 | 235 | 129 | 7 | 28 | 256 | 97 | 323 | 9.08e-41 | 143 |
| MS.gene009990.t1 | MTR_4g068100 | 40.465 | 215 | 117 | 6 | 1 | 212 | 62 | 268 | 9.88e-41 | 142 |
| MS.gene009990.t1 | MTR_2g072190 | 38.636 | 176 | 92 | 8 | 12 | 176 | 58 | 228 | 1.70e-24 | 98.2 |
| MS.gene009990.t1 | MTR_2g072190 | 38.636 | 176 | 92 | 8 | 12 | 176 | 58 | 228 | 2.18e-24 | 98.6 |
| MS.gene009990.t1 | MTR_2g072190 | 38.636 | 176 | 92 | 8 | 12 | 176 | 58 | 228 | 2.45e-24 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009990.t1 | AT3G10850 | 74.419 | 258 | 66 | 0 | 1 | 258 | 1 | 258 | 2.24e-149 | 417 |
| MS.gene009990.t1 | AT1G06130 | 40.530 | 264 | 143 | 7 | 1 | 258 | 75 | 330 | 4.70e-61 | 196 |
| MS.gene009990.t1 | AT1G06130 | 40.530 | 264 | 143 | 7 | 1 | 258 | 76 | 331 | 4.99e-61 | 196 |
| MS.gene009990.t1 | AT2G31350 | 40.076 | 262 | 143 | 7 | 1 | 256 | 71 | 324 | 4.23e-60 | 193 |
| MS.gene009990.t1 | AT2G31350 | 40.076 | 262 | 143 | 7 | 1 | 256 | 70 | 323 | 4.79e-60 | 192 |
| MS.gene009990.t1 | AT2G43430 | 37.786 | 262 | 149 | 7 | 1 | 256 | 33 | 286 | 2.83e-53 | 174 |
| MS.gene009990.t1 | AT2G43430 | 37.786 | 262 | 149 | 7 | 1 | 256 | 60 | 313 | 1.12e-52 | 173 |
| MS.gene009990.t1 | AT2G43430 | 37.786 | 262 | 149 | 7 | 1 | 256 | 78 | 331 | 1.30e-52 | 174 |
| MS.gene009990.t1 | AT2G31350 | 43.646 | 181 | 91 | 6 | 1 | 178 | 71 | 243 | 4.96e-44 | 149 |
| MS.gene009990.t1 | AT1G53580 | 36.207 | 174 | 99 | 7 | 12 | 176 | 64 | 234 | 1.49e-23 | 97.1 |
| MS.gene009990.t1 | AT1G53580 | 36.207 | 174 | 99 | 7 | 12 | 176 | 64 | 234 | 1.58e-23 | 97.1 |
Find 72 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTGAGCCAGACAATTTA+AGG | 0.125224 | 5.3:+54572865 | MS.gene009990:CDS |
| TGGAGCAGATATTAATATTT+TGG | 0.156543 | 5.3:+54569120 | MS.gene009990:CDS |
| AATATGAATAATTGTCTTCT+AGG | 0.191774 | 5.3:-54568113 | None:intergenic |
| AATTCACCAGTTCAAGCTTT+AGG | 0.250356 | 5.3:+54573583 | MS.gene009990:CDS |
| TTCAAGCTTTAGGAGAATTA+AGG | 0.267781 | 5.3:+54573593 | MS.gene009990:CDS |
| GCCAGACAATTTAAGGATAC+TGG | 0.273291 | 5.3:+54572872 | MS.gene009990:CDS |
| AGAACCTTCTCGGGTTCAAC+TGG | 0.279688 | 5.3:-54568257 | None:intergenic |
| GGTAGATCAACCCGCATAAA+TGG | 0.285446 | 5.3:-54572978 | None:intergenic |
| CACATAAGTTATTATGTTAC+TGG | 0.296178 | 5.3:+54570134 | MS.gene009990:CDS |
| TCCAGTATCCTTAAATTGTC+TGG | 0.313488 | 5.3:-54572873 | None:intergenic |
| TGCACTGATGCACTTGAAAA+TGG | 0.367223 | 5.3:+54569082 | MS.gene009990:CDS |
| TTACAGTTTATTGCTGGTTG+TGG | 0.377627 | 5.3:+54571428 | MS.gene009990:intron |
| AGGTGACGAACCTGGATTGC+AGG | 0.389745 | 5.3:-54572999 | None:intergenic |
| CAACAATTCCTTCAACCATT+GGG | 0.403762 | 5.3:+54572937 | MS.gene009990:CDS |
| CCAATGGTTGAAGGAATTGT+TGG | 0.408062 | 5.3:-54572936 | None:intergenic |
| CAGTCACTCTCTGTAACATT+AGG | 0.418249 | 5.3:+54571485 | MS.gene009990:CDS |
| ATAATAACTTATGTGACCTT+TGG | 0.423129 | 5.3:-54570126 | None:intergenic |
| TACAGTTTATTGCTGGTTGT+GGG | 0.427659 | 5.3:+54571429 | MS.gene009990:intron |
| CAGTAAACTCGAGTTGGCTT+TGG | 0.432953 | 5.3:-54571515 | None:intergenic |
| GCTCAAAATCAGCGGCAAAC+TGG | 0.437847 | 5.3:+54572909 | MS.gene009990:CDS |
| CAACTGTTAGAGCAAATTGT+AGG | 0.446983 | 5.3:-54572848 | None:intergenic |
| TAAGGAAGGTGAAAGACAAT+TGG | 0.456358 | 5.3:+54573611 | MS.gene009990:CDS |
| CCACCGTAGACCTTGATTCC+AGG | 0.459806 | 5.3:-54569037 | None:intergenic |
| AATTCTCCTAAAGCTTGAAC+TGG | 0.461100 | 5.3:-54573589 | None:intergenic |
| GCAATTGGTGCCTGGAATCA+AGG | 0.468151 | 5.3:+54569027 | MS.gene009990:CDS |
| AGAAGCTTCTAGAACCTTCT+CGG | 0.469322 | 5.3:-54568267 | None:intergenic |
| CTAGAAGCTTCTAATTCGCT+TGG | 0.474234 | 5.3:+54568278 | MS.gene009990:CDS |
| AAATGAGAAGATAAAGCAAT+TGG | 0.479609 | 5.3:+54569012 | MS.gene009990:CDS |
| AAATGTATTACAGGAGAAGA+TGG | 0.479696 | 5.3:+54573555 | MS.gene009990:intron |
| GGTTGATCTACCTGCAATCC+AGG | 0.480223 | 5.3:+54572989 | MS.gene009990:CDS |
| AAGATAAAGCAATTGGTGCC+TGG | 0.484234 | 5.3:+54569019 | MS.gene009990:CDS |
| CCAACAATTCCTTCAACCAT+TGG | 0.485477 | 5.3:+54572936 | MS.gene009990:CDS |
| GAAGCTTCTAGAACCTTCTC+GGG | 0.487420 | 5.3:-54568266 | None:intergenic |
| AATGTATTACAGGAGAAGAT+GGG | 0.490763 | 5.3:+54573556 | MS.gene009990:intron |
| AACTCGTCCCCAATGGTTGA+AGG | 0.501355 | 5.3:-54572945 | None:intergenic |
| CTTCTAGGCAAGGGATGTGA+TGG | 0.525041 | 5.3:-54568098 | None:intergenic |
| TTCAACCATTGGGGACGAGT+TGG | 0.526858 | 5.3:+54572947 | MS.gene009990:CDS |
| AATGGTGATAAGGTGCATCT+TGG | 0.529288 | 5.3:+54569100 | MS.gene009990:CDS |
| TGTTACTGGCAAAGAGGATG+AGG | 0.533558 | 5.3:+54570148 | MS.gene009990:CDS |
| TGCACTTGAAAATGGTGATA+AGG | 0.547264 | 5.3:+54569090 | MS.gene009990:CDS |
| GGAAAGCAATCCATTTATGC+GGG | 0.549011 | 5.3:+54572968 | MS.gene009990:CDS |
| GGAAGGTGAAAGACAATTGG+AGG | 0.550249 | 5.3:+54573614 | MS.gene009990:CDS |
| TACCATACCAAGGTGTGTGA+AGG | 0.555990 | 5.3:-54569144 | None:intergenic |
| TACTAAAGAAGCTGCTGCGG+TGG | 0.557695 | 5.3:+54568232 | MS.gene009990:CDS |
| GAATAATTGTCTTCTAGGCA+AGG | 0.561491 | 5.3:-54568108 | None:intergenic |
| GCTTTCCAACTCGTCCCCAA+TGG | 0.563746 | 5.3:-54572952 | None:intergenic |
| GTGCCTGGAATCAAGGTCTA+CGG | 0.571178 | 5.3:+54569034 | MS.gene009990:CDS |
| TGGCCACAGTAAACTCGAGT+TGG | 0.572496 | 5.3:-54571521 | None:intergenic |
| GGCTCAATTGATAATGTCAA+AGG | 0.572860 | 5.3:+54569058 | MS.gene009990:CDS |
| AATAATTGTCTTCTAGGCAA+GGG | 0.575192 | 5.3:-54568107 | None:intergenic |
| TCCTCACTACTCATCATCAC+TGG | 0.575795 | 5.3:+54568318 | MS.gene009990:CDS |
| ACCATACCAAGGTGTGTGAA+GGG | 0.579252 | 5.3:-54569143 | None:intergenic |
| TGGCAAAGAGGATGAGGACC+CGG | 0.591483 | 5.3:+54570154 | MS.gene009990:CDS |
| GAACCTTCTCGGGTTCAACT+GGG | 0.598743 | 5.3:-54568256 | None:intergenic |
| TGGAAAGCAATCCATTTATG+CGG | 0.600543 | 5.3:+54572967 | MS.gene009990:CDS |
| GGACCCAGTTGAACCCGAGA+AGG | 0.609066 | 5.3:+54568253 | MS.gene009990:CDS |
| TTATTATGTTACTGGCAAAG+AGG | 0.617601 | 5.3:+54570142 | MS.gene009990:CDS |
| TTGTGTCGCAGGGATCATGC+TGG | 0.618556 | 5.3:+54568986 | MS.gene009990:intron |
| GAAGGTGAAAGACAATTGGA+GGG | 0.619096 | 5.3:+54573615 | MS.gene009990:CDS |
| AACAATTCCTTCAACCATTG+GGG | 0.620181 | 5.3:+54572938 | MS.gene009990:CDS |
| AACTTATGTGACCTTTGGTG+TGG | 0.628520 | 5.3:-54570121 | None:intergenic |
| GACTACTAAAGAAGCTGCTG+CGG | 0.631494 | 5.3:+54568229 | MS.gene009990:CDS |
| TGGTTGAAGGAATTGTTGGT+TGG | 0.632512 | 5.3:-54572932 | None:intergenic |
| ATGTATTACAGGAGAAGATG+GGG | 0.647430 | 5.3:+54573557 | MS.gene009990:intron |
| AGCTTTAGGAGAATTAAGGA+AGG | 0.648528 | 5.3:+54573597 | MS.gene009990:CDS |
| TGTCGCAGGGATCATGCTGG+TGG | 0.662186 | 5.3:+54568989 | MS.gene009990:intron |
| CCTGGAATCAAGGTCTACGG+TGG | 0.671932 | 5.3:+54569037 | MS.gene009990:CDS |
| TAACCTGGGCTCAAAATCAG+CGG | 0.672912 | 5.3:+54572901 | MS.gene009990:CDS |
| ACCAGTGATGATGAGTAGTG+AGG | 0.687663 | 5.3:-54568319 | None:intergenic |
| TCGAGTTTACTGTGGCCATG+AGG | 0.690000 | 5.3:+54571526 | MS.gene009990:CDS |
| AAGGTGAAAGACAATTGGAG+GGG | 0.732652 | 5.3:+54573616 | MS.gene009990:CDS |
| AAGCCAACTCGAGTTTACTG+TGG | 0.744582 | 5.3:+54571518 | MS.gene009990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGACATATATTTAAAA+CGG | - | chr5.3:54573330-54573349 | None:intergenic | 10.0% |
| !!! | AGTTTGTTAAAAATAATAAT+TGG | - | chr5.3:54569553-54569572 | None:intergenic | 10.0% |
| !!! | TAAATATTATTCTTTTACAA+GGG | + | chr5.3:54569698-54569717 | MS.gene009990:intron | 10.0% |
| !!! | TTTTAAATATATGTCAATTT+TGG | + | chr5.3:54573330-54573349 | MS.gene009990:intron | 10.0% |
| !! | AAAAATCTAAGTAAATATGT+TGG | - | chr5.3:54573178-54573197 | None:intergenic | 15.0% |
| !! | AAAGTTTCCAATTTAATTAA+TGG | + | chr5.3:54571688-54571707 | MS.gene009990:intron | 15.0% |
| !! | ATTATATAAATAGCTTAAAC+AGG | - | chr5.3:54568818-54568837 | None:intergenic | 15.0% |
| !! | ATTGAAATGAAATATATCAT+AGG | + | chr5.3:54571572-54571591 | MS.gene009990:intron | 15.0% |
| !! | CCTGATAAAATAAATTAAAA+GGG | + | chr5.3:54571282-54571301 | MS.gene009990:intron | 15.0% |
| !! | TCTTTCATTATTCTTTATTA+TGG | - | chr5.3:54569336-54569355 | None:intergenic | 15.0% |
| !! | TTACATAGATTAATAACTTA+TGG | - | chr5.3:54569669-54569688 | None:intergenic | 15.0% |
| !! | TTGAAATGAAATATATCATA+GGG | + | chr5.3:54571573-54571592 | MS.gene009990:intron | 15.0% |
| !!! | AAATATTATTCTTTTACAAG+GGG | + | chr5.3:54569699-54569718 | MS.gene009990:intron | 15.0% |
| !!! | AAGTGAAAATTACAATATTT+TGG | - | chr5.3:54573281-54573300 | None:intergenic | 15.0% |
| !!! | AATATTGTAATTTTCACTTT+TGG | + | chr5.3:54573282-54573301 | MS.gene009990:intron | 15.0% |
| !!! | AATTACAAATCTTCAATTTT+TGG | - | chr5.3:54569225-54569244 | None:intergenic | 15.0% |
| !!! | ACTAATTTGTTACAATAAAA+TGG | + | chr5.3:54570441-54570460 | MS.gene009990:intron | 15.0% |
| !!! | AGCATTGTATAATTTTATAT+TGG | - | chr5.3:54573497-54573516 | None:intergenic | 15.0% |
| !!! | ATTACAAATCTTCAATTTTT+GGG | - | chr5.3:54569224-54569243 | None:intergenic | 15.0% |
| !!! | ATTTTATATTTTCTGTTGAA+GGG | + | chr5.3:54570990-54571009 | MS.gene009990:intron | 15.0% |
| !!! | ATTTTTTATTTTCTCAATCA+GGG | - | chr5.3:54572182-54572201 | None:intergenic | 15.0% |
| !!! | ATTTTTTTGGTTATTTTGTT+TGG | + | chr5.3:54568905-54568924 | MS.gene009990:intron | 15.0% |
| !!! | GCATTGTATAATTTTATATT+GGG | - | chr5.3:54573496-54573515 | None:intergenic | 15.0% |
| !!! | GTAAATATTATTCTTTTACA+AGG | + | chr5.3:54569697-54569716 | MS.gene009990:intron | 15.0% |
| !!! | TATTTTATATTTTCTGTTGA+AGG | + | chr5.3:54570989-54571008 | MS.gene009990:intron | 15.0% |
| !!! | TGAAGGTATATAAATTTTAA+TGG | + | chr5.3:54570317-54570336 | MS.gene009990:intron | 15.0% |
| !!! | TTAGTCATTTTTTTATTTAG+AGG | + | chr5.3:54570343-54570362 | MS.gene009990:intron | 15.0% |
| !!! | TTTTTACTTTTACCAAATTT+TGG | - | chr5.3:54570413-54570432 | None:intergenic | 15.0% |
| !! | AAAGTTAAATGACCAAAATT+TGG | + | chr5.3:54570398-54570417 | MS.gene009990:intron | 20.0% |
| !! | AATATGAATAATTGTCTTCT+AGG | - | chr5.3:54568116-54568135 | None:intergenic | 20.0% |
| !! | ACATTAATTAAGTTTGTGTT+TGG | - | chr5.3:54568570-54568589 | None:intergenic | 20.0% |
| !! | ACGAATCTAATTAAATGAAA+AGG | - | chr5.3:54573249-54573268 | None:intergenic | 20.0% |
| !! | ATATATTTCATTTCAATGAC+GGG | - | chr5.3:54571569-54571588 | None:intergenic | 20.0% |
| !! | ATGAACCAAACATAAAATTT+AGG | - | chr5.3:54571325-54571344 | None:intergenic | 20.0% |
| !! | ATTAATCTATGTAAATAGTC+AGG | + | chr5.3:54569675-54569694 | MS.gene009990:intron | 20.0% |
| !! | ATTTACATCAATACATTACA+AGG | - | chr5.3:54573539-54573558 | None:intergenic | 20.0% |
| !! | CCAAATAAAAAAATTTCATC+TGG | - | chr5.3:54572558-54572577 | None:intergenic | 20.0% |
| !! | GATATATTTCATTTCAATGA+CGG | - | chr5.3:54571570-54571589 | None:intergenic | 20.0% |
| !! | GCCTGATAAAATAAATTAAA+AGG | + | chr5.3:54571281-54571300 | MS.gene009990:intron | 20.0% |
| !! | GTAATGAGAATTAATGTTAT+TGG | + | chr5.3:54570933-54570952 | MS.gene009990:intron | 20.0% |
| !! | TAAATTCGTTGTTAAAAACT+GGG | + | chr5.3:54572141-54572160 | MS.gene009990:intron | 20.0% |
| !! | TATTATTTATAAGCTTGTCA+AGG | - | chr5.3:54568436-54568455 | None:intergenic | 20.0% |
| !! | TATTGATGTAAATGTATTAC+AGG | + | chr5.3:54573546-54573565 | MS.gene009990:intron | 20.0% |
| !! | TGAACCAAACATAAAATTTA+GGG | - | chr5.3:54571324-54571343 | None:intergenic | 20.0% |
| !! | TGGTAAAAGTAAAAACTTAA+AGG | + | chr5.3:54570418-54570437 | MS.gene009990:intron | 20.0% |
| !! | TGTATTGTATATATATAGAC+CGG | + | chr5.3:54569247-54569266 | MS.gene009990:intron | 20.0% |
| !! | TTAAATTCGTTGTTAAAAAC+TGG | + | chr5.3:54572140-54572159 | MS.gene009990:intron | 20.0% |
| !!! | AAAGTGAGAGAATATTTTTT+AGG | + | chr5.3:54573428-54573447 | MS.gene009990:intron | 20.0% |
| !!! | AAGTGAGAGAATATTTTTTA+GGG | + | chr5.3:54573429-54573448 | MS.gene009990:intron | 20.0% |
| !!! | AATTTTATATTGGGCAAAAT+GGG | - | chr5.3:54573487-54573506 | None:intergenic | 20.0% |
| !!! | CCAGATGAAATTTTTTTATT+TGG | + | chr5.3:54572555-54572574 | MS.gene009990:intron | 20.0% |
| !!! | CCCTTTTAATTTATTTTATC+AGG | - | chr5.3:54571285-54571304 | None:intergenic | 20.0% |
| !!! | GATTTTTTATTTTCTCAATC+AGG | - | chr5.3:54572183-54572202 | None:intergenic | 20.0% |
| !!! | TAATTTTATATTGGGCAAAA+TGG | - | chr5.3:54573488-54573507 | None:intergenic | 20.0% |
| !!! | TACTCATTTAGAATCAATTT+AGG | - | chr5.3:54573072-54573091 | None:intergenic | 20.0% |
| !!! | TCTTTTCGAAAGATTAAAAT+TGG | + | chr5.3:54572298-54572317 | MS.gene009990:intron | 20.0% |
| !!! | TTGTTATTATTCATTTTTGC+AGG | + | chr5.3:54568195-54568214 | MS.gene009990:intron | 20.0% |
| !!! | TTTTATATTTTCTGTTGAAG+GGG | + | chr5.3:54570991-54571010 | MS.gene009990:intron | 20.0% |
| !!! | TTTTCCCTAAATTTTATGTT+TGG | + | chr5.3:54571317-54571336 | MS.gene009990:intron | 20.0% |
| !!! | TTTTGATTGTTTTCATTTTC+TGG | + | chr5.3:54570810-54570829 | MS.gene009990:intron | 20.0% |
| ! | AAAAAAATTTCATCTGGCAA+AGG | - | chr5.3:54572552-54572571 | None:intergenic | 25.0% |
| ! | AAAAAATTTCATCTGGCAAA+GGG | - | chr5.3:54572551-54572570 | None:intergenic | 25.0% |
| ! | AAAAATCTGTCATTCTTCAT+AGG | + | chr5.3:54572196-54572215 | MS.gene009990:intron | 25.0% |
| ! | AAAAGAAATATGGACTCAAA+AGG | - | chr5.3:54571082-54571101 | None:intergenic | 25.0% |
| ! | AAATGAGAAGATAAAGCAAT+TGG | + | chr5.3:54569012-54569031 | MS.gene009990:CDS | 25.0% |
| ! | AAATTCATATCTGTGAAGTT+TGG | - | chr5.3:54570891-54570910 | None:intergenic | 25.0% |
| ! | AACTTAAAGCTAGAATTTGT+AGG | + | chr5.3:54573121-54573140 | MS.gene009990:intron | 25.0% |
| ! | AATTACACATTATCAACCAT+TGG | - | chr5.3:54569621-54569640 | None:intergenic | 25.0% |
| ! | AATTCATATCTGTGAAGTTT+GGG | - | chr5.3:54570890-54570909 | None:intergenic | 25.0% |
| ! | ACCAAACTAAAACTTTATCA+GGG | + | chr5.3:54570759-54570778 | MS.gene009990:intron | 25.0% |
| ! | ACTTAAAGCTAGAATTTGTA+GGG | + | chr5.3:54573122-54573141 | MS.gene009990:intron | 25.0% |
| ! | AGACCAAGATAAAAGAAATA+TGG | - | chr5.3:54571092-54571111 | None:intergenic | 25.0% |
| ! | ATAATAACTTATGTGACCTT+TGG | - | chr5.3:54570129-54570148 | None:intergenic | 25.0% |
| ! | ATAATATCACCATAAAAGCA+AGG | - | chr5.3:54569844-54569863 | None:intergenic | 25.0% |
| ! | ATATAATCAAAGAGAGAACT+TGG | + | chr5.3:54568831-54568850 | MS.gene009990:intron | 25.0% |
| ! | ATTGGTTAATAAAGAAAAGG+TGG | - | chr5.3:54569603-54569622 | None:intergenic | 25.0% |
| ! | ATTTAATTAATGGAGATGAC+AGG | + | chr5.3:54571698-54571717 | MS.gene009990:intron | 25.0% |
| ! | CAAAAAACTAAGTCTAACAA+AGG | - | chr5.3:54570676-54570695 | None:intergenic | 25.0% |
| ! | CACATAAGTTATTATGTTAC+TGG | + | chr5.3:54570134-54570153 | MS.gene009990:CDS | 25.0% |
| ! | CATGTAAGAAACTTAAAGAT+GGG | + | chr5.3:54570280-54570299 | MS.gene009990:intron | 25.0% |
| ! | CTTTAGCATTACATATACAT+AGG | - | chr5.3:54568729-54568748 | None:intergenic | 25.0% |
| ! | GACTGAAGAAAATATATTGA+GGG | - | chr5.3:54572269-54572288 | None:intergenic | 25.0% |
| ! | GTATTGTATATATATAGACC+GGG | + | chr5.3:54569248-54569267 | MS.gene009990:intron | 25.0% |
| ! | GTCATCTCCATTAATTAAAT+TGG | - | chr5.3:54571698-54571717 | None:intergenic | 25.0% |
| ! | GTTAATATTTATCAATCCTC+TGG | + | chr5.3:54569984-54570003 | MS.gene009990:intron | 25.0% |
| ! | TAACTTTCATAACACTAATG+AGG | - | chr5.3:54570385-54570404 | None:intergenic | 25.0% |
| ! | TATATTTCATTTCAATGACG+GGG | - | chr5.3:54571568-54571587 | None:intergenic | 25.0% |
| ! | TGTATATGTAATGCTAAAGT+AGG | + | chr5.3:54568730-54568749 | MS.gene009990:intron | 25.0% |
| ! | TTATGCACAATCATAACTTA+TGG | - | chr5.3:54571226-54571245 | None:intergenic | 25.0% |
| ! | TTATTTAGAGGAAACTCATA+AGG | + | chr5.3:54570355-54570374 | MS.gene009990:intron | 25.0% |
| ! | TTTGCTGAAAAAACATGTAT+TGG | + | chr5.3:54572508-54572527 | MS.gene009990:intron | 25.0% |
| !! | AACAATAATCAGCCTATTTT+TGG | + | chr5.3:54572441-54572460 | MS.gene009990:intron | 25.0% |
| !! | AAGAAGTTCACAATATTTTG+TGG | - | chr5.3:54571847-54571866 | None:intergenic | 25.0% |
| !! | ACAGATATGAATTTTTCTAG+GGG | + | chr5.3:54570897-54570916 | MS.gene009990:intron | 25.0% |
| !! | ACCATTGGTTAATAAAGAAA+AGG | - | chr5.3:54569606-54569625 | None:intergenic | 25.0% |
| !! | ACCTTTTCTTTATTAACCAA+TGG | + | chr5.3:54569602-54569621 | MS.gene009990:intron | 25.0% |
| !! | ACTAAAGTTTCGTCATATTT+TGG | - | chr5.3:54572409-54572428 | None:intergenic | 25.0% |
| !! | AGTAGGATAATTATTCCTTT+TGG | + | chr5.3:54572242-54572261 | MS.gene009990:intron | 25.0% |
| !! | AGTCCATATTTCTTTTATCT+TGG | + | chr5.3:54571086-54571105 | MS.gene009990:intron | 25.0% |
| !! | CACAGATATGAATTTTTCTA+GGG | + | chr5.3:54570896-54570915 | MS.gene009990:intron | 25.0% |
| !! | CGAATTTAACTTTGAATTCT+AGG | - | chr5.3:54572129-54572148 | None:intergenic | 25.0% |
| !! | CTTTAAGTTAGAATCAATTG+TGG | - | chr5.3:54573110-54573129 | None:intergenic | 25.0% |
| !! | GACAAATGACAATATGTTTT+GGG | - | chr5.3:54569906-54569925 | None:intergenic | 25.0% |
| !! | GAGAATTAATGTTATTGGTT+TGG | + | chr5.3:54570938-54570957 | MS.gene009990:intron | 25.0% |
| !! | GTATATCAATGATAGTGAAA+TGG | + | chr5.3:54569379-54569398 | MS.gene009990:intron | 25.0% |
| !! | TCACAGATATGAATTTTTCT+AGG | + | chr5.3:54570895-54570914 | MS.gene009990:intron | 25.0% |
| !! | TGACAAATGACAATATGTTT+TGG | - | chr5.3:54569907-54569926 | None:intergenic | 25.0% |
| !! | TGACATATATTTAAAACGGA+AGG | - | chr5.3:54573326-54573345 | None:intergenic | 25.0% |
| !! | TGGAGCAGATATTAATATTT+TGG | + | chr5.3:54569120-54569139 | MS.gene009990:CDS | 25.0% |
| !! | TTTTCTTTACAGTTTATTGC+TGG | + | chr5.3:54571422-54571441 | MS.gene009990:intron | 25.0% |
| !!! | AATACATGTTTTTTCAGCAA+AGG | - | chr5.3:54572509-54572528 | None:intergenic | 25.0% |
| !!! | ACAATAATCAGCCTATTTTT+GGG | + | chr5.3:54572442-54572461 | MS.gene009990:intron | 25.0% |
| !!! | AGACAAGTATACAGTTTTAT+TGG | - | chr5.3:54569874-54569893 | None:intergenic | 25.0% |
| !!! | ATACATGTTTTTTCAGCAAA+GGG | - | chr5.3:54572508-54572527 | None:intergenic | 25.0% |
| !!! | CTTTGTTAGACTTAGTTTTT+TGG | + | chr5.3:54570674-54570693 | MS.gene009990:intron | 25.0% |
| !!! | TATAGTTTTACTAGCGAAAA+AGG | + | chr5.3:54572722-54572741 | MS.gene009990:intron | 25.0% |
| !!! | TATTTTTTGTCTCTCAAAGT+AGG | + | chr5.3:54572225-54572244 | MS.gene009990:intron | 25.0% |
| !!! | TTGTTCACTTTTTCATTTTC+TGG | + | chr5.3:54568154-54568173 | MS.gene009990:intron | 25.0% |
| AAACCAATAATGCAACTTTG+AGG | + | chr5.3:54572673-54572692 | MS.gene009990:intron | 30.0% | |
| AAAGAAAAGGTGGATATTAG+TGG | - | chr5.3:54569593-54569612 | None:intergenic | 30.0% | |
| AAATATATTGAGGGTCCAAA+AGG | - | chr5.3:54572260-54572279 | None:intergenic | 30.0% | |
| AAATGGGGAATGATTTAGTA+TGG | + | chr5.3:54571192-54571211 | MS.gene009990:intron | 30.0% | |
| AAATGTATTACAGGAGAAGA+TGG | + | chr5.3:54573555-54573574 | MS.gene009990:intron | 30.0% | |
| AACCAATAATGCAACTTTGA+GGG | + | chr5.3:54572674-54572693 | MS.gene009990:intron | 30.0% | |
| AATAATTGTCTTCTAGGCAA+GGG | - | chr5.3:54568110-54568129 | None:intergenic | 30.0% | |
| AATATGACGAAACTTTAGTG+AGG | + | chr5.3:54572410-54572429 | MS.gene009990:intron | 30.0% | |
| AATCTCTCAAAACCAATACA+TGG | - | chr5.3:54572476-54572495 | None:intergenic | 30.0% | |
| AATGTATTACAGGAGAAGAT+GGG | + | chr5.3:54573556-54573575 | MS.gene009990:intron | 30.0% | |
| AATTAGTATTATACCCTGCT+TGG | - | chr5.3:54568643-54568662 | None:intergenic | 30.0% | |
| AGAATACTAAACAATACCAG+AGG | - | chr5.3:54570003-54570022 | None:intergenic | 30.0% | |
| AGATATTAAGCTGCAACTTA+GGG | + | chr5.3:54573220-54573239 | MS.gene009990:intron | 30.0% | |
| AGATTCCATGCTAAAAAAGT+TGG | - | chr5.3:54570703-54570722 | None:intergenic | 30.0% | |
| AGTGTAGATAGATTAATCGT+AGG | - | chr5.3:54570525-54570544 | None:intergenic | 30.0% | |
| ATATGACGAAACTTTAGTGA+GGG | + | chr5.3:54572411-54572430 | MS.gene009990:intron | 30.0% | |
| ATCGTAGGGTTAATCTTTAT+TGG | - | chr5.3:54570510-54570529 | None:intergenic | 30.0% | |
| ATGGTTTATGTTAACAAGAG+AGG | - | chr5.3:54570084-54570103 | None:intergenic | 30.0% | |
| ATGTTAACAAGAGAGGTTAA+GGG | - | chr5.3:54570077-54570096 | None:intergenic | 30.0% | |
| CCAAACTAAAACTTTATCAG+GGG | + | chr5.3:54570760-54570779 | MS.gene009990:intron | 30.0% | |
| CCACACATAATATTTGAATG+TGG | + | chr5.3:54569446-54569465 | MS.gene009990:intron | 30.0% | |
| CCACATTCAAATATTATGTG+TGG | - | chr5.3:54569449-54569468 | None:intergenic | 30.0% | |
| CTTAAAGCTAGAATTTGTAG+GGG | + | chr5.3:54573123-54573142 | MS.gene009990:intron | 30.0% | |
| GAAACTCATTTGTGCAAAAT+TGG | + | chr5.3:54572625-54572644 | MS.gene009990:intron | 30.0% | |
| GAATACAACATACAAGAAGT+TGG | + | chr5.3:54572032-54572051 | MS.gene009990:intron | 30.0% | |
| GACCAAACTAAAACTTTATC+AGG | + | chr5.3:54570758-54570777 | MS.gene009990:intron | 30.0% | |
| GATACTGGAAAAATTAACCT+GGG | + | chr5.3:54572887-54572906 | MS.gene009990:CDS | 30.0% | |
| GCAGGGTATAATACTAATTA+AGG | + | chr5.3:54568644-54568663 | MS.gene009990:intron | 30.0% | |
| GCATGTAAGAAACTTAAAGA+TGG | + | chr5.3:54570279-54570298 | MS.gene009990:intron | 30.0% | |
| GGACTGAAGAAAATATATTG+AGG | - | chr5.3:54572270-54572289 | None:intergenic | 30.0% | |
| GTGTAGATAGATTAATCGTA+GGG | - | chr5.3:54570524-54570543 | None:intergenic | 30.0% | |
| GTTCTCATTCATTCAATAGT+TGG | + | chr5.3:54571751-54571770 | MS.gene009990:intron | 30.0% | |
| TAGATATTAAGCTGCAACTT+AGG | + | chr5.3:54573219-54573238 | MS.gene009990:intron | 30.0% | |
| TATGTTAACAAGAGAGGTTA+AGG | - | chr5.3:54570078-54570097 | None:intergenic | 30.0% | |
| TATTCATATCAAGCTGACTA+CGG | - | chr5.3:54572017-54572036 | None:intergenic | 30.0% | |
| TGAAAGATGGCCATATTTAA+GGG | - | chr5.3:54570610-54570629 | None:intergenic | 30.0% | |
| TGTAAACTGGTAAACATCTT+GGG | + | chr5.3:54571919-54571938 | MS.gene009990:intron | 30.0% | |
| TGTTGAAATAAGCTGAAAAC+AGG | + | chr5.3:54568879-54568898 | MS.gene009990:intron | 30.0% | |
| TTAAAGCTAGAATTTGTAGG+GGG | + | chr5.3:54573124-54573143 | MS.gene009990:intron | 30.0% | |
| TTAACAACCAACAATTCCTT+GGG | - | chr5.3:54571897-54571916 | None:intergenic | 30.0% | |
| TTATTATGTTACTGGCAAAG+AGG | + | chr5.3:54570142-54570161 | MS.gene009990:CDS | 30.0% | |
| TTGTAAACTGGTAAACATCT+TGG | + | chr5.3:54571918-54571937 | MS.gene009990:intron | 30.0% | |
| TTGTTACAATAAAATGGCGA+AGG | + | chr5.3:54570447-54570466 | MS.gene009990:intron | 30.0% | |
| TTTAGGGAAAATTGCTCTAT+CGG | - | chr5.3:54571308-54571327 | None:intergenic | 30.0% | |
| ! | AGTTCACAATATTTTGTGGA+AGG | - | chr5.3:54571843-54571862 | None:intergenic | 30.0% |
| ! | ATTAAGTTGTTTATCCAAGC+AGG | + | chr5.3:54568626-54568645 | MS.gene009990:intron | 30.0% |
| ! | CTTTGACAATGTGTCAATTT+TGG | - | chr5.3:54573412-54573431 | None:intergenic | 30.0% |
| ! | GTATTCTCTCTTTTATGTAG+TGG | + | chr5.3:54570016-54570035 | MS.gene009990:intron | 30.0% |
| ! | TATCAATGATAGTGAAATGG+TGG | + | chr5.3:54569382-54569401 | MS.gene009990:intron | 30.0% |
| ! | TCTTTAGCACAAAGCTTTAT+TGG | - | chr5.3:54569755-54569774 | None:intergenic | 30.0% |
| ! | TTAAGTTGTTTATCCAAGCA+GGG | + | chr5.3:54568627-54568646 | MS.gene009990:intron | 30.0% |
| ! | TTGGTTGTTAAGTTGTAAAC+TGG | + | chr5.3:54571906-54571925 | MS.gene009990:intron | 30.0% |
| !! | AAATCTTCAATTTTTGGGCA+GGG | - | chr5.3:54569219-54569238 | None:intergenic | 30.0% |
| !! | ATTTTCTGGAAAATGACTCA+TGG | + | chr5.3:54570824-54570843 | MS.gene009990:intron | 30.0% |
| !! | TGTTTTTACTGGAGATACAT+TGG | + | chr5.3:54570178-54570197 | MS.gene009990:CDS | 30.0% |
| !! | TTCAAGCTTTAGGAGAATTA+AGG | + | chr5.3:54573593-54573612 | MS.gene009990:CDS | 30.0% |
| !!! | CAATAATCAGCCTATTTTTG+GGG | + | chr5.3:54572443-54572462 | MS.gene009990:intron | 30.0% |
| !!! | TGAAAACAGGTGCATTTTTT+TGG | + | chr5.3:54568892-54568911 | MS.gene009990:intron | 30.0% |
| !!! | TGTATGTTTGGTTCTAGTTT+TGG | + | chr5.3:54573041-54573060 | MS.gene009990:intron | 30.0% |
| AACAATTCCTTCAACCATTG+GGG | + | chr5.3:54572938-54572957 | MS.gene009990:CDS | 35.0% | |
| AATTCACCAGTTCAAGCTTT+AGG | + | chr5.3:54573583-54573602 | MS.gene009990:CDS | 35.0% | |
| AATTCTCCTAAAGCTTGAAC+TGG | - | chr5.3:54573592-54573611 | None:intergenic | 35.0% | |
| ACCAAACATACACTTAGAAC+AGG | - | chr5.3:54573033-54573052 | None:intergenic | 35.0% | |
| ACTAAGGATGAGAAAAAGAG+TGG | - | chr5.3:54570571-54570590 | None:intergenic | 35.0% | |
| AGCAGATGAAAGTAGTTTAG+TGG | - | chr5.3:54571648-54571667 | None:intergenic | 35.0% | |
| ATGAGAAAAAGAGTGGGTAT+GGG | - | chr5.3:54570564-54570583 | None:intergenic | 35.0% | |
| ATGCTAAAGTAGGATGTGTT+TGG | + | chr5.3:54568740-54568759 | MS.gene009990:intron | 35.0% | |
| ATGTATTACAGGAGAAGATG+GGG | + | chr5.3:54573557-54573576 | MS.gene009990:intron | 35.0% | |
| ATTAATGGAGATGACAGGAT+TGG | + | chr5.3:54571703-54571722 | MS.gene009990:intron | 35.0% | |
| CAACAATTCCTTCAACCATT+GGG | + | chr5.3:54572937-54572956 | MS.gene009990:CDS | 35.0% | |
| CAACTGTTAGAGCAAATTGT+AGG | - | chr5.3:54572851-54572870 | None:intergenic | 35.0% | |
| CAAGATGCTAAAAGAATTCG+GGG | - | chr5.3:54571817-54571836 | None:intergenic | 35.0% | |
| CAGATGAACACCCTTAAATA+TGG | + | chr5.3:54570597-54570616 | MS.gene009990:intron | 35.0% | |
| CCAAGATGCTAAAAGAATTC+GGG | - | chr5.3:54571818-54571837 | None:intergenic | 35.0% | |
| CCCAAGATGCTAAAAGAATT+CGG | - | chr5.3:54571819-54571838 | None:intergenic | 35.0% | |
| CTAAGGATGAGAAAAAGAGT+GGG | - | chr5.3:54570570-54570589 | None:intergenic | 35.0% | |
| CTTAACAACCAACAATTCCT+TGG | - | chr5.3:54571898-54571917 | None:intergenic | 35.0% | |
| GAATAATTGTCTTCTAGGCA+AGG | - | chr5.3:54568111-54568130 | None:intergenic | 35.0% | |
| GGATACTGGAAAAATTAACC+TGG | + | chr5.3:54572886-54572905 | MS.gene009990:CDS | 35.0% | |
| GGCTATGAAAATCAGAGAAA+TGG | - | chr5.3:54570103-54570122 | None:intergenic | 35.0% | |
| GTGAAAGATGGCCATATTTA+AGG | - | chr5.3:54570611-54570630 | None:intergenic | 35.0% | |
| TAAGGAAGGTGAAAGACAAT+TGG | + | chr5.3:54573611-54573630 | MS.gene009990:CDS | 35.0% | |
| TAGACAAAACAATCAAGTCC+CGG | - | chr5.3:54569269-54569288 | None:intergenic | 35.0% | |
| TATGACGAAACTTTAGTGAG+GGG | + | chr5.3:54572412-54572431 | MS.gene009990:intron | 35.0% | |
| TCCAGTATCCTTAAATTGTC+TGG | - | chr5.3:54572876-54572895 | None:intergenic | 35.0% | |
| TCTCACTTTACTCACTTTAG+AGG | - | chr5.3:54569495-54569514 | None:intergenic | 35.0% | |
| TCTTTCGAAAAGAGAGATCA+AGG | - | chr5.3:54572291-54572310 | None:intergenic | 35.0% | |
| TGAACTTCTTGAGATGTTAG+TGG | + | chr5.3:54571857-54571876 | MS.gene009990:intron | 35.0% | |
| TGCACTTGAAAATGGTGATA+AGG | + | chr5.3:54569090-54569109 | MS.gene009990:CDS | 35.0% | |
| TGGAAAGCAATCCATTTATG+CGG | + | chr5.3:54572967-54572986 | MS.gene009990:CDS | 35.0% | |
| TGGAAGCAGTATAATGCAAA+AGG | + | chr5.3:54572575-54572594 | MS.gene009990:intron | 35.0% | |
| TGTTCATCTGAACATGACTA+AGG | - | chr5.3:54570587-54570606 | None:intergenic | 35.0% | |
| TTCACTGGCATTATCTGTTA+AGG | + | chr5.3:54569930-54569949 | MS.gene009990:intron | 35.0% | |
| TTCCCTCAAAGTTGCATTAT+TGG | - | chr5.3:54572679-54572698 | None:intergenic | 35.0% | |
| TTGGCATATCTCTACTCTTT+CGG | - | chr5.3:54572359-54572378 | None:intergenic | 35.0% | |
| ! | AACTTCATCGGTCTAAAATG+AGG | - | chr5.3:54573378-54573397 | None:intergenic | 35.0% |
| ! | ACTTCATCGGTCTAAAATGA+GGG | - | chr5.3:54573377-54573396 | None:intergenic | 35.0% |
| ! | ATAATGCAACTTTGAGGGAA+AGG | + | chr5.3:54572679-54572698 | MS.gene009990:intron | 35.0% |
| ! | CCGAATTCTTTTAGCATCTT+GGG | + | chr5.3:54571816-54571835 | MS.gene009990:intron | 35.0% |
| ! | CTTGAGTATGTTTTACCTCA+TGG | - | chr5.3:54571544-54571563 | None:intergenic | 35.0% |
| ! | CTTGTTATGCCAATTGTTCT+CGG | + | chr5.3:54569799-54569818 | MS.gene009990:intron | 35.0% |
| ! | TAATGCAACTTTGAGGGAAA+GGG | + | chr5.3:54572680-54572699 | MS.gene009990:intron | 35.0% |
| ! | TACAGTTTATTGCTGGTTGT+GGG | + | chr5.3:54571429-54571448 | MS.gene009990:intron | 35.0% |
| ! | TCCTGTTCTAAGTGTATGTT+TGG | + | chr5.3:54573029-54573048 | MS.gene009990:intron | 35.0% |
| ! | TGCTCATGCATGATTTTACT+TGG | + | chr5.3:54571664-54571683 | MS.gene009990:intron | 35.0% |
| ! | TTACAGTTTATTGCTGGTTG+TGG | + | chr5.3:54571428-54571447 | MS.gene009990:intron | 35.0% |
| !! | AGCTTTAGGAGAATTAAGGA+AGG | + | chr5.3:54573597-54573616 | MS.gene009990:CDS | 35.0% |
| !! | CAAATCTTCAATTTTTGGGC+AGG | - | chr5.3:54569220-54569239 | None:intergenic | 35.0% |
| !! | GATTGTTTTGTCTATGTCGT+TGG | + | chr5.3:54569275-54569294 | MS.gene009990:intron | 35.0% |
| !! | GGCTCAATTGATAATGTCAA+AGG | + | chr5.3:54569058-54569077 | MS.gene009990:CDS | 35.0% |
| !! | TGGTTTGTGTAGCTAACTTT+TGG | + | chr5.3:54573350-54573369 | MS.gene009990:intron | 35.0% |
| !! | TTTTTAGCATGGAATCTCGT+CGG | + | chr5.3:54570706-54570725 | MS.gene009990:intron | 35.0% |
| !! | TTTTTCTAGGGGTTTTGTAG+AGG | + | chr5.3:54570908-54570927 | MS.gene009990:intron | 35.0% |
| !!! | ATGTTTGGTTCTAGTTTTGG+AGG | + | chr5.3:54573044-54573063 | MS.gene009990:intron | 35.0% |
| !!! | CCCCTGATAAAGTTTTAGTT+TGG | - | chr5.3:54570763-54570782 | None:intergenic | 35.0% |
| !!! | GGAATCCAACTTTTTTAGCA+TGG | + | chr5.3:54570695-54570714 | MS.gene009990:intron | 35.0% |
| !!! | GGTTGTGGGAAATTTTTTGA+AGG | + | chr5.3:54571443-54571462 | MS.gene009990:CDS | 35.0% |
| !!! | TGGTTTTGATCCCCAAAAAT+AGG | - | chr5.3:54572456-54572475 | None:intergenic | 35.0% |
| !!! | TTGTGCTGCTTTAGTTTTGA+CGG | + | chr5.3:54568933-54568952 | MS.gene009990:intron | 35.0% |
| AAACAGAAGCCGAGAACAAT+TGG | - | chr5.3:54569811-54569830 | None:intergenic | 40.0% | |
| AACTTATGTGACCTTTGGTG+TGG | - | chr5.3:54570124-54570143 | None:intergenic | 40.0% | |
| AAGGTGAAAGACAATTGGAG+GGG | + | chr5.3:54573616-54573635 | MS.gene009990:CDS | 40.0% | |
| AAGTTGGAACCGTAGTTTCA+GGG | + | chr5.3:54572048-54572067 | MS.gene009990:intron | 40.0% | |
| AATGGTGATAAGGTGCATCT+TGG | + | chr5.3:54569100-54569119 | MS.gene009990:CDS | 40.0% | |
| ACATACACTTAGAACAGGAG+TGG | - | chr5.3:54573028-54573047 | None:intergenic | 40.0% | |
| ACGGAAGGATCAAATCAAAC+TGG | - | chr5.3:54573311-54573330 | None:intergenic | 40.0% | |
| ACTTAGAACAGGAGTGGAAA+AGG | - | chr5.3:54573022-54573041 | None:intergenic | 40.0% | |
| ACTTCTTGAGATGTTAGTGG+TGG | + | chr5.3:54571860-54571879 | MS.gene009990:intron | 40.0% | |
| AGCAGTATAATGCAAAAGGC+AGG | + | chr5.3:54572579-54572598 | MS.gene009990:intron | 40.0% | |
| AGGTTAAGGGTCTGGATAAA+AGG | - | chr5.3:54570064-54570083 | None:intergenic | 40.0% | |
| ATACCTTCACTTCAAGCACT+TGG | - | chr5.3:54570306-54570325 | None:intergenic | 40.0% | |
| CAGTCACTCTCTGTAACATT+AGG | + | chr5.3:54571485-54571504 | MS.gene009990:CDS | 40.0% | |
| CAGTTGAGCCAGACAATTTA+AGG | + | chr5.3:54572865-54572884 | MS.gene009990:CDS | 40.0% | |
| CATATCTGTGAAGTTTGGGT+TGG | - | chr5.3:54570886-54570905 | None:intergenic | 40.0% | |
| CCAACAATTCCTTCAACCAT+TGG | + | chr5.3:54572936-54572955 | MS.gene009990:CDS | 40.0% | |
| CCAATGGTTGAAGGAATTGT+TGG | - | chr5.3:54572939-54572958 | None:intergenic | 40.0% | |
| CGGAAGGATCAAATCAAACT+GGG | - | chr5.3:54573310-54573329 | None:intergenic | 40.0% | |
| CTAATGTGCACAATCACACT+AGG | - | chr5.3:54571256-54571275 | None:intergenic | 40.0% | |
| CTAGAAGCTTCTAATTCGCT+TGG | + | chr5.3:54568278-54568297 | MS.gene009990:CDS | 40.0% | |
| CTTCTTGAGATGTTAGTGGT+GGG | + | chr5.3:54571861-54571880 | MS.gene009990:intron | 40.0% | |
| GAAGGTGAAAGACAATTGGA+GGG | + | chr5.3:54573615-54573634 | MS.gene009990:CDS | 40.0% | |
| GATGAGAAAAAGAGTGGGTA+TGG | - | chr5.3:54570565-54570584 | None:intergenic | 40.0% | |
| GCCAGACAATTTAAGGATAC+TGG | + | chr5.3:54572872-54572891 | MS.gene009990:CDS | 40.0% | |
| GCGGTATTTAGGTAAAAGCT+GGG | + | chr5.3:54571955-54571974 | MS.gene009990:intron | 40.0% | |
| GGAAAGCAATCCATTTATGC+GGG | + | chr5.3:54572968-54572987 | MS.gene009990:CDS | 40.0% | |
| GGAAGGATCAAATCAAACTG+GGG | - | chr5.3:54573309-54573328 | None:intergenic | 40.0% | |
| GTATCTCCAGTAAAAACAGC+CGG | - | chr5.3:54570176-54570195 | None:intergenic | 40.0% | |
| GTGCTTGAAAGCTTAAGTTC+CGG | - | chr5.3:54570853-54570872 | None:intergenic | 40.0% | |
| GTGTGCATAAGTAAAGCATG+TGG | + | chr5.3:54570473-54570492 | MS.gene009990:intron | 40.0% | |
| TAAGTAAAGCATGTGGTGCA+TGG | + | chr5.3:54570480-54570499 | MS.gene009990:intron | 40.0% | |
| TAATAGACAACCTCCAACAC+AGG | - | chr5.3:54572101-54572120 | None:intergenic | 40.0% | |
| TATCTCCAGTAAAAACAGCC+GGG | - | chr5.3:54570175-54570194 | None:intergenic | 40.0% | |
| TCCCTCTCAATCGTAAAAGA+GGG | + | chr5.3:54572321-54572340 | MS.gene009990:intron | 40.0% | |
| TGCGGTATTTAGGTAAAAGC+TGG | + | chr5.3:54571954-54571973 | MS.gene009990:intron | 40.0% | |
| TGGGGATCAAAACCATGTAT+TGG | + | chr5.3:54572461-54572480 | MS.gene009990:intron | 40.0% | |
| TGGTTGAAGGAATTGTTGGT+TGG | - | chr5.3:54572935-54572954 | None:intergenic | 40.0% | |
| TTACCTAAATACCGCAAGCA+TGG | - | chr5.3:54571950-54571969 | None:intergenic | 40.0% | |
| TTTAGACCGATGAAGTTAGC+TGG | + | chr5.3:54573381-54573400 | MS.gene009990:intron | 40.0% | |
| TTTCTTGTGAACACACACGA+AGG | - | chr5.3:54572609-54572628 | None:intergenic | 40.0% | |
| ! | AAGATAAAGCAATTGGTGCC+TGG | + | chr5.3:54569019-54569038 | MS.gene009990:CDS | 40.0% |
| ! | AGAATTTGTAGGGGGTATAC+AGG | + | chr5.3:54573132-54573151 | MS.gene009990:intron | 40.0% |
| ! | CAAGTTGAGTTACCATACCA+AGG | - | chr5.3:54569157-54569176 | None:intergenic | 40.0% |
| ! | CCCGAATTCTTTTAGCATCT+TGG | + | chr5.3:54571815-54571834 | MS.gene009990:intron | 40.0% |
| ! | GATTTTCATAGCCACACCAA+AGG | + | chr5.3:54570110-54570129 | MS.gene009990:intron | 40.0% |
| ! | GTTTTGTGTTTGAGTGGCTA+TGG | + | chr5.3:54570960-54570979 | MS.gene009990:intron | 40.0% |
| ! | TCCCTCTTTTACGATTGAGA+GGG | - | chr5.3:54572325-54572344 | None:intergenic | 40.0% |
| ! | TGCACTGATGCACTTGAAAA+TGG | + | chr5.3:54569082-54569101 | MS.gene009990:CDS | 40.0% |
| ! | TGTCATTTGTCATGCTTCAC+TGG | + | chr5.3:54569915-54569934 | MS.gene009990:intron | 40.0% |
| ! | TTCTGGAAAATGACTCATGG+TGG | + | chr5.3:54570827-54570846 | MS.gene009990:intron | 40.0% |
| ! | TTTTATCTTGGTCTCTGTCG+TGG | + | chr5.3:54571098-54571117 | MS.gene009990:intron | 40.0% |
| !! | AGAAGCTTCTAGAACCTTCT+CGG | - | chr5.3:54568270-54568289 | None:intergenic | 40.0% |
| !!! | GAGGTTTAGCCTTGCTTTTA+TGG | + | chr5.3:54569832-54569851 | MS.gene009990:intron | 40.0% |
| !!! | GGTTTGGTTTTGTGTTTGAG+TGG | + | chr5.3:54570954-54570973 | MS.gene009990:intron | 40.0% |
| !!! | TGTGCTGCTTTAGTTTTGAC+GGG | + | chr5.3:54568934-54568953 | MS.gene009990:intron | 40.0% |
| AACAAGAGAGGTTAAGGGTC+TGG | - | chr5.3:54570072-54570091 | None:intergenic | 45.0% | |
| AAGCCAACTCGAGTTTACTG+TGG | + | chr5.3:54571518-54571537 | MS.gene009990:CDS | 45.0% | |
| ACCATACCAAGGTGTGTGAA+GGG | - | chr5.3:54569146-54569165 | None:intergenic | 45.0% | |
| AGCTGACTACGGTATTCAAC+AGG | - | chr5.3:54572006-54572025 | None:intergenic | 45.0% | |
| AGTCCATGCTTGCGGTATTT+AGG | + | chr5.3:54571944-54571963 | MS.gene009990:intron | 45.0% | |
| ATGGTGGCAGATACTTGATG+AGG | + | chr5.3:54569398-54569417 | MS.gene009990:intron | 45.0% | |
| ATGTGCACAATCACACTAGG+TGG | - | chr5.3:54571253-54571272 | None:intergenic | 45.0% | |
| GAAGCAGCATTCACGACTAA+TGG | - | chr5.3:54572074-54572093 | None:intergenic | 45.0% | |
| GAAGGGGAAGAAGAAGTTGA+TGG | + | chr5.3:54571007-54571026 | MS.gene009990:intron | 45.0% | |
| GAAGTTGGAACCGTAGTTTC+AGG | + | chr5.3:54572047-54572066 | MS.gene009990:intron | 45.0% | |
| GACTAATGGCCCTGAAACTA+CGG | - | chr5.3:54572060-54572079 | None:intergenic | 45.0% | |
| GACTACTAAAGAAGCTGCTG+CGG | + | chr5.3:54568229-54568248 | MS.gene009990:CDS | 45.0% | |
| GCGTCGAAATTGGTGAAAGA+TGG | - | chr5.3:54570623-54570642 | None:intergenic | 45.0% | |
| GGAAGGTGAAAGACAATTGG+AGG | + | chr5.3:54573614-54573633 | MS.gene009990:CDS | 45.0% | |
| GGTAAAAGCTGGGAAATGTG+AGG | + | chr5.3:54571965-54571984 | MS.gene009990:intron | 45.0% | |
| GGTAGATCAACCCGCATAAA+TGG | - | chr5.3:54572981-54573000 | None:intergenic | 45.0% | |
| GTCCCTCTCAATCGTAAAAG+AGG | + | chr5.3:54572320-54572339 | MS.gene009990:intron | 45.0% | |
| GTCGTTCCAGCTAACTTCAT+CGG | - | chr5.3:54573390-54573409 | None:intergenic | 45.0% | |
| TAACCTGGGCTCAAAATCAG+CGG | + | chr5.3:54572901-54572920 | MS.gene009990:CDS | 45.0% | |
| TACCATACCAAGGTGTGTGA+AGG | - | chr5.3:54569147-54569166 | None:intergenic | 45.0% | |
| TCCTCACTACTCATCATCAC+TGG | + | chr5.3:54568318-54568337 | MS.gene009990:CDS | 45.0% | |
| TGTGCTACCCAAGGAATTGT+TGG | + | chr5.3:54571887-54571906 | MS.gene009990:intron | 45.0% | |
| TGTTACTGGCAAAGAGGATG+AGG | + | chr5.3:54570148-54570167 | MS.gene009990:CDS | 45.0% | |
| TGTTCTCGGCTTCTGTTTAG+AGG | + | chr5.3:54569813-54569832 | MS.gene009990:intron | 45.0% | |
| ! | ACCAGTGATGATGAGTAGTG+AGG | - | chr5.3:54568322-54568341 | None:intergenic | 45.0% |
| ! | AGGTTCTTCACTGAGTACTG+CGG | - | chr5.3:54572831-54572850 | None:intergenic | 45.0% |
| ! | CAGGGGCTTTTGTAGATTGA+AGG | + | chr5.3:54570777-54570796 | MS.gene009990:intron | 45.0% |
| ! | GTCCCTCTTTTACGATTGAG+AGG | - | chr5.3:54572326-54572345 | None:intergenic | 45.0% |
| ! | TTTTGTGCGATTGTGTCGCA+GGG | + | chr5.3:54568976-54568995 | MS.gene009990:intron | 45.0% |
| ! | TTTTTGTGCGATTGTGTCGC+AGG | + | chr5.3:54568975-54568994 | MS.gene009990:intron | 45.0% |
| !! | AAGTTGATGGTGGTGTGGAT+TGG | + | chr5.3:54571020-54571039 | MS.gene009990:intron | 45.0% |
| !! | AGAAGAAGTTGATGGTGGTG+TGG | + | chr5.3:54571015-54571034 | MS.gene009990:intron | 45.0% |
| !! | CAGTAAACTCGAGTTGGCTT+TGG | - | chr5.3:54571518-54571537 | None:intergenic | 45.0% |
| !! | CTTCAATTTTTGGGCAGGGA+GGG | - | chr5.3:54569215-54569234 | None:intergenic | 45.0% |
| !! | GAAGCTTCTAGAACCTTCTC+GGG | - | chr5.3:54568269-54568288 | None:intergenic | 45.0% |
| !! | TCTTCAATTTTTGGGCAGGG+AGG | - | chr5.3:54569216-54569235 | None:intergenic | 45.0% |
| !! | TTCAATTTTTGGGCAGGGAG+GGG | - | chr5.3:54569214-54569233 | None:intergenic | 45.0% |
| !!! | AAATAAAAATTTGTAATTTT+TGG | - | chr5.3:54573462-54573481 | None:intergenic | 5.0% |
| !!! | AAATTTTTTTTATGTTTTAT+TGG | + | chr5.3:54569959-54569978 | MS.gene009990:intron | 5.0% |
| AACTCGTCCCCAATGGTTGA+AGG | - | chr5.3:54572948-54572967 | None:intergenic | 50.0% | |
| AAGGAGGTGGAAGGGAAATG+GGG | + | chr5.3:54571177-54571196 | MS.gene009990:intron | 50.0% | |
| AGAACCTTCTCGGGTTCAAC+TGG | - | chr5.3:54568260-54568279 | None:intergenic | 50.0% | |
| AGTGGAAAAGGTGACGAACC+TGG | - | chr5.3:54573010-54573029 | None:intergenic | 50.0% | |
| CAAGCACAGCAGACAGATGA+CGG | - | chr5.3:54570648-54570667 | None:intergenic | 50.0% | |
| CAAGGAGGTGGAAGGGAAAT+GGG | + | chr5.3:54571176-54571195 | MS.gene009990:intron | 50.0% | |
| CAGAGAAGACTGCAGTAGAG+GGG | + | chr5.3:54571150-54571169 | MS.gene009990:intron | 50.0% | |
| CTTCTAGGCAAGGGATGTGA+TGG | - | chr5.3:54568101-54568120 | None:intergenic | 50.0% | |
| GAACCTTCTCGGGTTCAACT+GGG | - | chr5.3:54568259-54568278 | None:intergenic | 50.0% | |
| GACAACCTCCAACACAGGTA+AGG | - | chr5.3:54572096-54572115 | None:intergenic | 50.0% | |
| GCAGAGAAGACTGCAGTAGA+GGG | + | chr5.3:54571149-54571168 | MS.gene009990:intron | 50.0% | |
| GCTCAAAATCAGCGGCAAAC+TGG | + | chr5.3:54572909-54572928 | MS.gene009990:CDS | 50.0% | |
| GGAAAATGACTCATGGTGGC+CGG | + | chr5.3:54570831-54570850 | MS.gene009990:intron | 50.0% | |
| GGAACTGATGAAGACAGTGG+CGG | + | chr5.3:54570727-54570746 | MS.gene009990:intron | 50.0% | |
| GGTTGATCTACCTGCAATCC+AGG | + | chr5.3:54572989-54573008 | MS.gene009990:CDS | 50.0% | |
| GTCGGAACTGATGAAGACAG+TGG | + | chr5.3:54570724-54570743 | MS.gene009990:intron | 50.0% | |
| GTGCCTGGAATCAAGGTCTA+CGG | + | chr5.3:54569034-54569053 | MS.gene009990:CDS | 50.0% | |
| TACTAAAGAAGCTGCTGCGG+TGG | + | chr5.3:54568232-54568251 | MS.gene009990:CDS | 50.0% | |
| TATCTTGGTCTCTGTCGTGG+TGG | + | chr5.3:54571101-54571120 | MS.gene009990:intron | 50.0% | |
| TCGAGTTTACTGTGGCCATG+AGG | + | chr5.3:54571526-54571545 | MS.gene009990:CDS | 50.0% | |
| TGCAGAGAAGACTGCAGTAG+AGG | + | chr5.3:54571148-54571167 | MS.gene009990:intron | 50.0% | |
| TGCTTCCTTACCTGTGTTGG+AGG | + | chr5.3:54572088-54572107 | MS.gene009990:intron | 50.0% | |
| TGGCCACAGTAAACTCGAGT+TGG | - | chr5.3:54571524-54571543 | None:intergenic | 50.0% | |
| TTCAACCATTGGGGACGAGT+TGG | + | chr5.3:54572947-54572966 | MS.gene009990:CDS | 50.0% | |
| ! | GCAATTGGTGCCTGGAATCA+AGG | + | chr5.3:54569027-54569046 | MS.gene009990:CDS | 50.0% |
| ! | TGCTGCTTCCTTACCTGTGT+TGG | + | chr5.3:54572085-54572104 | MS.gene009990:intron | 50.0% |
| ! | TTTTGGCCCTTCACACACCT+TGG | + | chr5.3:54569137-54569156 | MS.gene009990:CDS | 50.0% |
| !! | GGGGAAGAAGAAGTTGATGG+TGG | + | chr5.3:54571010-54571029 | MS.gene009990:intron | 50.0% |
| !! | TCAATTTTTGGGCAGGGAGG+GGG | - | chr5.3:54569213-54569232 | None:intergenic | 50.0% |
| ACTGCAGTAGAGGGGAACCA+AGG | + | chr5.3:54571158-54571177 | MS.gene009990:intron | 55.0% | |
| AGGTGACGAACCTGGATTGC+AGG | - | chr5.3:54573002-54573021 | None:intergenic | 55.0% | |
| CCAAGGAGGTGGAAGGGAAA+TGG | + | chr5.3:54571175-54571194 | MS.gene009990:intron | 55.0% | |
| CCACCGTAGACCTTGATTCC+AGG | - | chr5.3:54569040-54569059 | None:intergenic | 55.0% | |
| CCATTTCCCTTCCACCTCCT+TGG | - | chr5.3:54571178-54571197 | None:intergenic | 55.0% | |
| CCTGGAATCAAGGTCTACGG+TGG | + | chr5.3:54569037-54569056 | MS.gene009990:CDS | 55.0% | |
| CTTGGGTCAGTCCATGCTTG+CGG | + | chr5.3:54571936-54571955 | MS.gene009990:intron | 55.0% | |
| GAACGACGGTACTGTTCTGG+TGG | + | chr5.3:54571125-54571144 | MS.gene009990:intron | 55.0% | |
| GCCCTTCACACACCTTGGTA+TGG | + | chr5.3:54569142-54569161 | MS.gene009990:intron | 55.0% | |
| GCTTTCCAACTCGTCCCCAA+TGG | - | chr5.3:54572955-54572974 | None:intergenic | 55.0% | |
| GGGCCAAGTGCTTGAAGTGA+AGG | + | chr5.3:54570300-54570319 | MS.gene009990:intron | 55.0% | |
| GGTGAACGACGGTACTGTTC+TGG | + | chr5.3:54571122-54571141 | MS.gene009990:intron | 55.0% | |
| TGGCAAAGAGGATGAGGACC+CGG | + | chr5.3:54570154-54570173 | MS.gene009990:CDS | 55.0% | |
| TTGTGTCGCAGGGATCATGC+TGG | + | chr5.3:54568986-54569005 | MS.gene009990:intron | 55.0% | |
| ! | GATGACGGTCGCGTCGAAAT+TGG | - | chr5.3:54570633-54570652 | None:intergenic | 55.0% |
| ! | TCTGTCGTGGTGGTGAACGA+CGG | + | chr5.3:54571111-54571130 | MS.gene009990:intron | 55.0% |
| !! | CAATTTTTGGGCAGGGAGGG+GGG | - | chr5.3:54569212-54569231 | None:intergenic | 55.0% |
| !!! | GAGGACCCGGCTGTTTTTAC+TGG | + | chr5.3:54570167-54570186 | MS.gene009990:CDS | 55.0% |
| !!! | TTGCCGCTGATTTTGAGCCC+AGG | - | chr5.3:54572907-54572926 | None:intergenic | 55.0% |
| AGGGGAACCAAGGAGGTGGA+AGG | + | chr5.3:54571168-54571187 | MS.gene009990:intron | 60.0% | |
| GCAGTAGAGGGGAACCAAGG+AGG | + | chr5.3:54571161-54571180 | MS.gene009990:intron | 60.0% | |
| GGACCCAGTTGAACCCGAGA+AGG | + | chr5.3:54568253-54568272 | MS.gene009990:CDS | 60.0% | |
| GGGGAACCAAGGAGGTGGAA+GGG | + | chr5.3:54571169-54571188 | MS.gene009990:intron | 60.0% | |
| GTAGAGGGGAACCAAGGAGG+TGG | + | chr5.3:54571164-54571183 | MS.gene009990:intron | 60.0% | |
| TGTCGCAGGGATCATGCTGG+TGG | + | chr5.3:54568989-54569008 | MS.gene009990:intron | 60.0% | |
| GCAGGGAGGGGGGAAGGAAA+GGG | - | chr5.3:54569202-54569221 | None:intergenic | 65.0% | |
| ! | GGTGGGCACTGTGCTACCCA+AGG | + | chr5.3:54571878-54571897 | MS.gene009990:intron | 65.0% |
| ! | TTTTGGGCAGGGAGGGGGGA+AGG | - | chr5.3:54569208-54569227 | None:intergenic | 65.0% |
| GGCAGGGAGGGGGGAAGGAA+AGG | - | chr5.3:54569203-54569222 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 54568090 | 54573642 | 54568090 | ID=MS.gene009990 |
| chr5.3 | mRNA | 54568090 | 54573642 | 54568090 | ID=MS.gene009990.t1;Parent=MS.gene009990 |
| chr5.3 | exon | 54568090 | 54568136 | 54568090 | ID=MS.gene009990.t1.exon1;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54568090 | 54568136 | 54568090 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| chr5.3 | exon | 54568217 | 54568339 | 54568217 | ID=MS.gene009990.t1.exon2;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54568217 | 54568339 | 54568217 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| chr5.3 | exon | 54568997 | 54569158 | 54568997 | ID=MS.gene009990.t1.exon3;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54568997 | 54569158 | 54568997 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| chr5.3 | exon | 54570121 | 54570199 | 54570121 | ID=MS.gene009990.t1.exon4;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54570121 | 54570199 | 54570121 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| chr5.3 | exon | 54571434 | 54571547 | 54571434 | ID=MS.gene009990.t1.exon5;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54571434 | 54571547 | 54571434 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| chr5.3 | exon | 54572834 | 54573010 | 54572834 | ID=MS.gene009990.t1.exon6;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54572834 | 54573010 | 54572834 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| chr5.3 | exon | 54573568 | 54573642 | 54573568 | ID=MS.gene009990.t1.exon7;Parent=MS.gene009990.t1 |
| chr5.3 | CDS | 54573568 | 54573642 | 54573568 | ID=cds.MS.gene009990.t1;Parent=MS.gene009990.t1 |
| Gene Sequence |
| Protein sequence |
