Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011569.t1 | XP_003608655.2 | 98 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 1.80E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011569.t1 | F4JML5 | 69.6 | 273 | 83 | 0 | 27 | 299 | 28 | 300 | 8.8e-106 | 384.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011569.t1 | G7JHN1 | 98.0 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 1.3e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene011569 | MS.gene071145 | PPI |
| MS.gene011569 | MS.gene97484 | PPI |
| MS.gene029856 | MS.gene011569 | PPI |
| MS.gene011569 | MS.gene071146 | PPI |
| MS.gene97486 | MS.gene011569 | PPI |
| MS.gene011569 | MS.gene022937 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011569.t1 | MTR_4g100350 | 98.000 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 0.0 | 601 |
| MS.gene011569.t1 | MTR_3g085700 | 29.412 | 255 | 171 | 3 | 52 | 298 | 17 | 270 | 8.31e-28 | 108 |
| MS.gene011569.t1 | MTR_4g120130 | 34.536 | 194 | 122 | 4 | 48 | 239 | 12 | 202 | 5.15e-25 | 105 |
| MS.gene011569.t1 | MTR_4g122220 | 28.049 | 246 | 171 | 3 | 53 | 296 | 15 | 256 | 1.09e-23 | 97.8 |
| MS.gene011569.t1 | MTR_8g064990 | 27.309 | 249 | 175 | 4 | 53 | 298 | 3 | 248 | 5.08e-22 | 93.2 |
| MS.gene011569.t1 | MTR_8g064990 | 25.170 | 294 | 212 | 5 | 10 | 298 | 32 | 322 | 4.15e-21 | 92.0 |
| MS.gene011569.t1 | MTR_2027s0010 | 28.509 | 228 | 150 | 4 | 57 | 276 | 13 | 235 | 7.20e-21 | 89.7 |
| MS.gene011569.t1 | MTR_0837s0020 | 44.762 | 105 | 55 | 1 | 102 | 206 | 206 | 307 | 2.23e-19 | 89.0 |
| MS.gene011569.t1 | MTR_6g087670 | 35.821 | 201 | 120 | 5 | 42 | 236 | 4 | 201 | 1.99e-17 | 82.8 |
| MS.gene011569.t1 | MTR_2g436300 | 33.816 | 207 | 131 | 5 | 48 | 251 | 10 | 213 | 4.87e-17 | 81.6 |
| MS.gene011569.t1 | MTR_1535s0020 | 33.913 | 115 | 74 | 2 | 50 | 163 | 14 | 127 | 1.19e-12 | 64.3 |
| MS.gene011569.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.22e-12 | 67.8 |
| MS.gene011569.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.32e-12 | 67.8 |
| MS.gene011569.t1 | MTR_8g010580 | 25.862 | 174 | 117 | 5 | 57 | 223 | 23 | 191 | 1.54e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene011569.t1 | AT4G16800 | 69.597 | 273 | 83 | 0 | 27 | 299 | 28 | 300 | 3.53e-141 | 400 |
| MS.gene011569.t1 | AT5G43280 | 29.278 | 263 | 168 | 4 | 50 | 297 | 16 | 275 | 9.05e-29 | 111 |
| MS.gene011569.t1 | AT4G16210 | 30.667 | 225 | 140 | 6 | 53 | 271 | 18 | 232 | 8.07e-25 | 100 |
| MS.gene011569.t1 | AT5G43280 | 30.811 | 185 | 111 | 3 | 50 | 220 | 16 | 197 | 1.48e-23 | 96.3 |
| MS.gene011569.t1 | AT1G60550 | 26.690 | 281 | 199 | 5 | 22 | 298 | 54 | 331 | 1.26e-22 | 96.3 |
| MS.gene011569.t1 | AT3G06860 | 37.173 | 191 | 113 | 4 | 53 | 239 | 17 | 204 | 1.98e-17 | 83.2 |
| MS.gene011569.t1 | AT4G29010 | 33.505 | 194 | 123 | 4 | 51 | 241 | 13 | 203 | 2.50e-16 | 79.7 |
| MS.gene011569.t1 | AT4G31810 | 28.488 | 172 | 116 | 5 | 59 | 225 | 56 | 225 | 2.39e-14 | 73.2 |
| MS.gene011569.t1 | AT3G24360 | 22.846 | 267 | 193 | 6 | 33 | 291 | 38 | 299 | 7.09e-13 | 68.9 |
| MS.gene011569.t1 | AT2G30660 | 24.194 | 186 | 129 | 5 | 47 | 225 | 8 | 188 | 3.07e-12 | 67.0 |
| MS.gene011569.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 7.47e-12 | 65.5 |
| MS.gene011569.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 8.59e-12 | 65.5 |
| MS.gene011569.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 8.59e-12 | 65.5 |
| MS.gene011569.t1 | AT5G65940 | 25.128 | 195 | 133 | 7 | 57 | 244 | 22 | 210 | 8.81e-12 | 65.5 |
| MS.gene011569.t1 | AT2G30650 | 25.532 | 188 | 124 | 7 | 47 | 225 | 8 | 188 | 9.10e-11 | 62.4 |
Find 73 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTCCACATTGACATTTC+TGG | 0.129778 | 8.4:-23454970 | MS.gene011569:CDS |
| TTTACTGGTCGAAAGATTAA+TGG | 0.241785 | 8.4:-23453910 | MS.gene011569:CDS |
| ATGGGTTTGGTGCTGATGAT+AGG | 0.313045 | 8.4:+23455858 | None:intergenic |
| AGTCCAAGATAAGTGTTCTA+TGG | 0.332255 | 8.4:+23455839 | None:intergenic |
| TGTACCCACTATTGCTGTTA+TGG | 0.336211 | 8.4:-23454652 | MS.gene011569:CDS |
| TCTAACATCAGCTTTGGTTT+TGG | 0.336452 | 8.4:-23452792 | MS.gene011569:CDS |
| TTGATCCGCAGTTTAGTTCC+CGG | 0.347590 | 8.4:-23455482 | MS.gene011569:CDS |
| TTAGCCATCCTTACTGCTAC+AGG | 0.361179 | 8.4:+23452845 | None:intergenic |
| CGTAGGAGCAAATGCTTTGA+TGG | 0.365191 | 8.4:-23454451 | MS.gene011569:intron |
| GTCAATTACTGTGTTGCTGC+TGG | 0.380310 | 8.4:-23453475 | MS.gene011569:CDS |
| GACTGATCTAACATCAGCTT+TGG | 0.400861 | 8.4:-23452798 | MS.gene011569:CDS |
| TCTTGGTGGTGGACTTGAAA+TGG | 0.419511 | 8.4:-23454619 | MS.gene011569:CDS |
| GGAAGAAGATTGCTATGATC+AGG | 0.420947 | 8.4:-23452771 | MS.gene011569:CDS |
| AACCCATAGAACACTTATCT+TGG | 0.425465 | 8.4:-23455842 | MS.gene011569:CDS |
| TCCTTCCATAACAGCAATAG+TGG | 0.426484 | 8.4:+23454647 | None:intergenic |
| AGATAAGTGTTCTATGGGTT+TGG | 0.434008 | 8.4:+23455845 | None:intergenic |
| TTGTGCTGGGGCTGATCTAA+AGG | 0.436607 | 8.4:-23455453 | MS.gene011569:intron |
| TTGATGGGTTTGCCAGAGAC+AGG | 0.439262 | 8.4:-23454435 | MS.gene011569:CDS |
| AATCTCACTGGCTCAGATTC+CGG | 0.440580 | 8.4:-23455787 | MS.gene011569:intron |
| AATTTCAAGTGCCTTGGAAT+GGG | 0.444417 | 8.4:+23453447 | None:intergenic |
| TGGTGGACTTGAAATGGCTT+TGG | 0.450397 | 8.4:-23454613 | MS.gene011569:CDS |
| TGGCATTGAGGCGCTATCAA+TGG | 0.451098 | 8.4:-23453890 | MS.gene011569:CDS |
| CCGAGCAATTTCAAGTGCCT+TGG | 0.455064 | 8.4:+23453441 | None:intergenic |
| AGGGATTATTGAAGTTAGCT+TGG | 0.460766 | 8.4:-23455603 | MS.gene011569:CDS |
| CCAAGGCACTTGAAATTGCT+CGG | 0.465476 | 8.4:-23453441 | MS.gene011569:CDS |
| GGCATTGAGGCGCTATCAAT+GGG | 0.465523 | 8.4:-23453889 | MS.gene011569:intron |
| CAATTTCAAGTGCCTTGGAA+TGG | 0.474872 | 8.4:+23453446 | None:intergenic |
| ACAGGACTTGCTATAATCCC+TGG | 0.491046 | 8.4:-23454417 | MS.gene011569:CDS |
| TGGGTTTGGTGCTGATGATA+GGG | 0.491563 | 8.4:+23455859 | None:intergenic |
| CTTCACTCGCCAGTGTACCT+TGG | 0.493653 | 8.4:+23452692 | None:intergenic |
| TGATCCGCAGTTTAGTTCCC+GGG | 0.494453 | 8.4:-23455481 | MS.gene011569:CDS |
| GTCCAAGATAAGTGTTCTAT+GGG | 0.506385 | 8.4:+23455840 | None:intergenic |
| AATAGGGCCCTGTAGCAGTA+AGG | 0.507132 | 8.4:-23452853 | MS.gene011569:intron |
| CAAGGCACTTGAAATTGCTC+GGG | 0.509246 | 8.4:-23453440 | MS.gene011569:CDS |
| TAGCCATCCTTACTGCTACA+GGG | 0.516527 | 8.4:+23452846 | None:intergenic |
| GTTGAATACTAAAGATCGAC+TGG | 0.518720 | 8.4:-23452747 | MS.gene011569:CDS |
| TAAAGATCGACTGGAAGGCT+TGG | 0.527119 | 8.4:-23452738 | MS.gene011569:CDS |
| GAAGGAGTAGCTCTTGGTGG+TGG | 0.527355 | 8.4:-23454630 | MS.gene011569:CDS |
| GTCAAGCTTCACAATCTCAC+TGG | 0.527894 | 8.4:-23455799 | MS.gene011569:CDS |
| ATTATAGCAAGTCCTGTCTC+TGG | 0.532014 | 8.4:+23454423 | None:intergenic |
| AAGAGCTATTAACGAGGGAG+TGG | 0.534208 | 8.4:-23452822 | MS.gene011569:CDS |
| GCATGTGATATTCGAATATG+TGG | 0.548943 | 8.4:-23454591 | MS.gene011569:intron |
| AACACAGCGACTACCTAGAT+TGG | 0.556542 | 8.4:-23453962 | MS.gene011569:CDS |
| CTTGTCATGCACAGGGCAGG+TGG | 0.558617 | 8.4:-23453985 | MS.gene011569:intron |
| GTAGGAGCAAATGCTTTGAT+GGG | 0.562937 | 8.4:-23454450 | MS.gene011569:intron |
| GTTATGGAAGGAGTAGCTCT+TGG | 0.563981 | 8.4:-23454636 | MS.gene011569:CDS |
| GGTAGGAAAATCAGTAGCAA+AGG | 0.575856 | 8.4:-23453941 | MS.gene011569:CDS |
| ATGGAAGGAGTAGCTCTTGG+TGG | 0.578725 | 8.4:-23454633 | MS.gene011569:CDS |
| ATCACAGGAACGCAGGACCA+TGG | 0.578834 | 8.4:-23455027 | MS.gene011569:intron |
| TGGCTGCATTTGCTGAAAAG+CGG | 0.579686 | 8.4:-23452718 | MS.gene011569:CDS |
| CAAGGTACACTGGCGAGTGA+AGG | 0.583948 | 8.4:-23452691 | None:intergenic |
| CTTAGCCTCGGATTGATCCA+TGG | 0.588003 | 8.4:+23455010 | None:intergenic |
| TGCTGGTGAAGCCCATTCCA+AGG | 0.590084 | 8.4:-23453458 | MS.gene011569:CDS |
| CAGGACTTGCTATAATCCCT+GGG | 0.590587 | 8.4:-23454416 | MS.gene011569:intron |
| CCCACTATTGCTGTTATGGA+AGG | 0.594271 | 8.4:-23454648 | MS.gene011569:CDS |
| GCCCCAGCACAAAATACCCC+GGG | 0.600202 | 8.4:+23455464 | None:intergenic |
| AGCCCCAGCACAAAATACCC+CGG | 0.602391 | 8.4:+23455463 | None:intergenic |
| CAGCGACTACCTAGATTGGT+AGG | 0.605465 | 8.4:-23453958 | MS.gene011569:CDS |
| TTCCACATTGACATTTCTGG+AGG | 0.607707 | 8.4:-23454967 | MS.gene011569:intron |
| GGGCCCTGTAGCAGTAAGGA+TGG | 0.608076 | 8.4:-23452849 | MS.gene011569:CDS |
| AAGCGGAAACCAAGGTACAC+TGG | 0.609624 | 8.4:-23452701 | MS.gene011569:CDS |
| AATACTAAAGATCGACTGGA+AGG | 0.616217 | 8.4:-23452743 | MS.gene011569:CDS |
| TTGCTGAAAAGCGGAAACCA+AGG | 0.638227 | 8.4:-23452709 | MS.gene011569:CDS |
| TCGAAAGATTAATGGCATTG+AGG | 0.647855 | 8.4:-23453902 | MS.gene011569:CDS |
| TTATCTGATCACAGGAACGC+AGG | 0.649519 | 8.4:-23455034 | MS.gene011569:intron |
| CCTTCCATAACAGCAATAGT+GGG | 0.670324 | 8.4:+23454648 | None:intergenic |
| GATCCGCAGTTTAGTTCCCG+GGG | 0.677040 | 8.4:-23455480 | MS.gene011569:CDS |
| GCTAAAAGAGCTATTAACGA+GGG | 0.677278 | 8.4:-23452827 | MS.gene011569:CDS |
| CAGGACCATGGATCAATCCG+AGG | 0.692671 | 8.4:-23455015 | MS.gene011569:CDS |
| GGCTAAAAGAGCTATTAACG+AGG | 0.701626 | 8.4:-23452828 | MS.gene011569:CDS |
| AACCTCCAGAAATGTCAATG+TGG | 0.701845 | 8.4:+23454965 | None:intergenic |
| ATACCCCGGGAACTAAACTG+CGG | 0.727381 | 8.4:+23455477 | None:intergenic |
| ATAGGGAAAGAGATGCTGCG+TGG | 0.727860 | 8.4:-23455557 | MS.gene011569:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTAATTAAAAGTAATTT+CGG | + | chr8.4:23455530-23455549 | None:intergenic | 10.0% |
| !!! | AAGAATTTAGTAATTTTTTT+GGG | + | chr8.4:23455020-23455039 | None:intergenic | 10.0% |
| !!! | CTTTTAATTAGAATATATTT+TGG | - | chr8.4:23455536-23455555 | MS.gene011569:CDS | 10.0% |
| !! | AAAACATTAATTCAAACTAA+TGG | - | chr8.4:23453549-23453568 | MS.gene011569:intron | 15.0% |
| !! | AAAATAAAAAAATACTATGC+TGG | + | chr8.4:23453928-23453947 | None:intergenic | 15.0% |
| !! | ACTCTATGAAAATTAATTAT+AGG | + | chr8.4:23455606-23455625 | None:intergenic | 15.0% |
| !!! | AAAAAATATAGTTTTCGTTA+TGG | + | chr8.4:23454993-23455012 | None:intergenic | 15.0% |
| !!! | ATCTACCTATTATTTTATTT+TGG | + | chr8.4:23454292-23454311 | None:intergenic | 15.0% |
| !!! | CAAGAATTTAGTAATTTTTT+TGG | + | chr8.4:23455021-23455040 | None:intergenic | 15.0% |
| !!! | TGTCAAATTTTCAATTAAAA+AGG | + | chr8.4:23455688-23455707 | None:intergenic | 15.0% |
| !!! | TTGATTTTTCATTTTTCAAA+GGG | - | chr8.4:23455347-23455366 | MS.gene011569:intron | 15.0% |
| !! | AAATAAACTGAAATGCTTAA+AGG | - | chr8.4:23453292-23453311 | MS.gene011569:intron | 20.0% |
| !! | ACATACTTTAATGATTCAAT+TGG | - | chr8.4:23455450-23455469 | MS.gene011569:intron | 20.0% |
| !! | AGCTACCAAAATAAAATAAT+AGG | - | chr8.4:23454284-23454303 | MS.gene011569:intron | 20.0% |
| !! | ATTACAAGTCCATATATAAA+TGG | - | chr8.4:23455299-23455318 | MS.gene011569:intron | 20.0% |
| !! | ATTTATATATGGACTTGTAA+TGG | + | chr8.4:23455300-23455319 | None:intergenic | 20.0% |
| !! | TATAAAGAGAAAATACTTGT+AGG | - | chr8.4:23455637-23455656 | MS.gene011569:intron | 20.0% |
| !! | TTATGACATTTAGAAATGTA+GGG | - | chr8.4:23455259-23455278 | MS.gene011569:intron | 20.0% |
| !! | TTTATGACATTTAGAAATGT+AGG | - | chr8.4:23455258-23455277 | MS.gene011569:intron | 20.0% |
| !!! | AAAATTTGACATTTGAGATA+AGG | - | chr8.4:23455697-23455716 | MS.gene011569:intron | 20.0% |
| !!! | AATAGATTTTGTTTGTTTAC+AGG | - | chr8.4:23452993-23453012 | MS.gene011569:intron | 20.0% |
| !!! | AGTTAGAGTAAACTTTTAAT+AGG | - | chr8.4:23455746-23455765 | MS.gene011569:intron | 20.0% |
| !!! | ATAGATTTTGTTTGTTTACA+GGG | - | chr8.4:23452994-23453013 | MS.gene011569:intron | 20.0% |
| !!! | GTTAGAGTAAACTTTTAATA+GGG | - | chr8.4:23455747-23455766 | MS.gene011569:intron | 20.0% |
| !!! | GTTGATTTTTCATTTTTCAA+AGG | - | chr8.4:23455346-23455365 | MS.gene011569:intron | 20.0% |
| !!! | TAAATTTTCCAGATACATAA+TGG | - | chr8.4:23454313-23454332 | MS.gene011569:intron | 20.0% |
| !!! | TGATTTTTCATTTTTCAAAG+GGG | - | chr8.4:23455348-23455367 | MS.gene011569:intron | 20.0% |
| !!! | TTAATTTTCATAGAGTTGTT+TGG | - | chr8.4:23455610-23455629 | MS.gene011569:intron | 20.0% |
| ! | AATTCGTTCAAAATCTACTA+CGG | + | chr8.4:23453408-23453427 | None:intergenic | 25.0% |
| ! | ATAAATAACCAACTTGTGTT+TGG | - | chr8.4:23454544-23454563 | MS.gene011569:intron | 25.0% |
| ! | TCAACTAATTCTAACAAAAC+TGG | + | chr8.4:23452903-23452922 | None:intergenic | 25.0% |
| ! | TTGTACTAAATTGTGTATCA+TGG | + | chr8.4:23453440-23453459 | None:intergenic | 25.0% |
| !! | AAATATAGTTTTCGTTATGG+TGG | + | chr8.4:23454990-23455009 | None:intergenic | 25.0% |
| !! | AATTGCATCAATTTGTTTGT+AGG | - | chr8.4:23454073-23454092 | MS.gene011569:intron | 25.0% |
| !! | AATTTGTTTGTAGGATAGTT+TGG | - | chr8.4:23454082-23454101 | MS.gene011569:intron | 25.0% |
| !!! | CTACTATTGTTTCTTTTTGT+GGG | - | chr8.4:23453799-23453818 | MS.gene011569:intron | 25.0% |
| !!! | GCAAAGGATATTATTTTTAC+TGG | - | chr8.4:23454691-23454710 | MS.gene011569:intron | 25.0% |
| !!! | TACTATTGTTTCTTTTTGTG+GGG | - | chr8.4:23453800-23453819 | MS.gene011569:intron | 25.0% |
| AAAATAGAGAGAGAAGTTAC+CGG | + | chr8.4:23452851-23452870 | None:intergenic | 30.0% | |
| AAACCAGTGTTGTCAAATAA+CGG | - | chr8.4:23453367-23453386 | MS.gene011569:intron | 30.0% | |
| AATTTGTAAACATCATACCC+AGG | + | chr8.4:23454220-23454239 | None:intergenic | 30.0% | |
| ACACAGCAAATGAATATGAA+AGG | + | chr8.4:23453856-23453875 | None:intergenic | 30.0% | |
| ATGACGACAAGAATCTATTA+CGG | + | chr8.4:23453345-23453364 | None:intergenic | 30.0% | |
| ATTCACAAAAAACTTAGCCT+CGG | + | chr8.4:23453621-23453640 | None:intergenic | 30.0% | |
| ATTTGTAAACATCATACCCA+GGG | + | chr8.4:23454219-23454238 | None:intergenic | 30.0% | |
| CTGAAGCTAAAAATGCTATA+GGG | - | chr8.4:23453042-23453061 | MS.gene011569:intron | 30.0% | |
| TATACTCTCCATTATGTATC+TGG | + | chr8.4:23454324-23454343 | None:intergenic | 30.0% | |
| TGATCACTATGTAAAGTGAT+CGG | - | chr8.4:23452961-23452980 | MS.gene011569:intron | 30.0% | |
| TTTACTGGTCGAAAGATTAA+TGG | - | chr8.4:23454706-23454725 | MS.gene011569:intron | 30.0% | |
| ! | ATTCTTGTTTATCTGATCAC+AGG | - | chr8.4:23453574-23453593 | MS.gene011569:intron | 30.0% |
| ! | GGACTACTTTATTTGTGAAA+CGG | + | chr8.4:23455049-23455068 | None:intergenic | 30.0% |
| !! | GCTACTATTGTTTCTTTTTG+TGG | - | chr8.4:23453798-23453817 | MS.gene011569:intron | 30.0% |
| !! | TACAAAGTGTTGTCAAATAG+CGG | - | chr8.4:23453455-23453474 | MS.gene011569:CDS | 30.0% |
| !!! | CTTTTTGTTTGAGTTGAGAA+TGG | - | chr8.4:23454460-23454479 | MS.gene011569:intron | 30.0% |
| !!! | TGTTTCTTTTTTCATTGCGT+AGG | - | chr8.4:23454148-23454167 | MS.gene011569:intron | 30.0% |
| AACCCATAGAACACTTATCT+TGG | - | chr8.4:23452774-23452793 | MS.gene011569:CDS | 35.0% | |
| AATACTAAAGATCGACTGGA+AGG | - | chr8.4:23455873-23455892 | MS.gene011569:CDS | 35.0% | |
| ACAACTTTCCAAACACAAGT+TGG | + | chr8.4:23454555-23454574 | None:intergenic | 35.0% | |
| AGATAAGTGTTCTATGGGTT+TGG | + | chr8.4:23452774-23452793 | None:intergenic | 35.0% | |
| AGGGATTATTGAAGTTAGCT+TGG | - | chr8.4:23453013-23453032 | MS.gene011569:intron | 35.0% | |
| AGTCCAAGATAAGTGTTCTA+TGG | + | chr8.4:23452780-23452799 | None:intergenic | 35.0% | |
| ATACTCTATTGAGTCTTGAC+TGG | + | chr8.4:23455504-23455523 | None:intergenic | 35.0% | |
| ATCACTATGTAAAGTGATCG+GGG | - | chr8.4:23452963-23452982 | MS.gene011569:intron | 35.0% | |
| ATGAAGCGCAAAGATATAAG+AGG | - | chr8.4:23454801-23454820 | MS.gene011569:intron | 35.0% | |
| ATGTAATCTTGTCATGCACA+GGG | - | chr8.4:23454624-23454643 | MS.gene011569:CDS | 35.0% | |
| CATTTAGAAATGTAGGGATC+AGG | - | chr8.4:23455265-23455284 | MS.gene011569:intron | 35.0% | |
| CCTGAAGCTAAAAATGCTAT+AGG | - | chr8.4:23453041-23453060 | MS.gene011569:intron | 35.0% | |
| CTATCAATGGGTATGTTGAT+TGG | - | chr8.4:23454739-23454758 | MS.gene011569:intron | 35.0% | |
| GATCACTATGTAAAGTGATC+GGG | - | chr8.4:23452962-23452981 | MS.gene011569:intron | 35.0% | |
| GCATGTGATATTCGAATATG+TGG | - | chr8.4:23454025-23454044 | MS.gene011569:intron | 35.0% | |
| GCTAAAAGAGCTATTAACGA+GGG | - | chr8.4:23455789-23455808 | MS.gene011569:CDS | 35.0% | |
| GTCCAAGATAAGTGTTCTAT+GGG | + | chr8.4:23452779-23452798 | None:intergenic | 35.0% | |
| GTTGAATACTAAAGATCGAC+TGG | - | chr8.4:23455869-23455888 | MS.gene011569:CDS | 35.0% | |
| TCGAAAGATTAATGGCATTG+AGG | - | chr8.4:23454714-23454733 | MS.gene011569:intron | 35.0% | |
| TGGTTATTTATGCTCATTGC+AGG | + | chr8.4:23454535-23454554 | None:intergenic | 35.0% | |
| TTGTCAAATAGCGGTTATAG+TGG | - | chr8.4:23453464-23453483 | MS.gene011569:CDS | 35.0% | |
| ! | AATTTCAAGTGCCTTGGAAT+GGG | + | chr8.4:23455172-23455191 | None:intergenic | 35.0% |
| ! | CAGTCACTGCCATTTATATA+TGG | + | chr8.4:23455311-23455330 | None:intergenic | 35.0% |
| ! | TTGACATTTGAGATAAGGCA+TGG | - | chr8.4:23455702-23455721 | MS.gene011569:intron | 35.0% |
| !! | ACTGATTTTCCTACCAATCT+AGG | + | chr8.4:23454670-23454689 | None:intergenic | 35.0% |
| !! | ATTGTTTCTTTTTGTGGGGA+AGG | - | chr8.4:23453804-23453823 | MS.gene011569:intron | 35.0% |
| !! | TCTAACATCAGCTTTGGTTT+TGG | - | chr8.4:23455824-23455843 | MS.gene011569:CDS | 35.0% |
| !! | TTGTTTCTTTTTGTGGGGAA+GGG | - | chr8.4:23453805-23453824 | MS.gene011569:intron | 35.0% |
| !!! | CCTATAGCATTTTTAGCTTC+AGG | + | chr8.4:23453044-23453063 | None:intergenic | 35.0% |
| !!! | GGATTTTTTCTTTGCTTTCC+TGG | + | chr8.4:23454969-23454988 | None:intergenic | 35.0% |
| !!! | TTTCGAAGTTTTGAAGTAGG+AGG | + | chr8.4:23452737-23452756 | None:intergenic | 35.0% |
| AAAGGGGTCTATTGTGAAAG+AGG | - | chr8.4:23455364-23455383 | MS.gene011569:intron | 40.0% | |
| AACCTCCAGAAATGTCAATG+TGG | + | chr8.4:23453654-23453673 | None:intergenic | 40.0% | |
| ACTGGCATATTCAGATTACC+AGG | + | chr8.4:23455486-23455505 | None:intergenic | 40.0% | |
| ATTATAGCAAGTCCTGTCTC+TGG | + | chr8.4:23454196-23454215 | None:intergenic | 40.0% | |
| CAAACTTCCATTGTCTTGGA+GGG | - | chr8.4:23454891-23454910 | MS.gene011569:intron | 40.0% | |
| CATGTAATCTTGTCATGCAC+AGG | - | chr8.4:23454623-23454642 | MS.gene011569:CDS | 40.0% | |
| CCTTCCATAACAGCAATAGT+GGG | + | chr8.4:23453971-23453990 | None:intergenic | 40.0% | |
| CTGGCATATTCAGATTACCA+GGG | + | chr8.4:23455485-23455504 | None:intergenic | 40.0% | |
| CTGTCAAACTTCCATTGTCT+TGG | - | chr8.4:23454887-23454906 | MS.gene011569:intron | 40.0% | |
| GAAAGATCATATGTTCTCGC+AGG | - | chr8.4:23455114-23455133 | MS.gene011569:intron | 40.0% | |
| GACTGATCTAACATCAGCTT+TGG | - | chr8.4:23455818-23455837 | MS.gene011569:CDS | 40.0% | |
| GGAAGAAGATTGCTATGATC+AGG | - | chr8.4:23455845-23455864 | MS.gene011569:CDS | 40.0% | |
| GGCTAAAAGAGCTATTAACG+AGG | - | chr8.4:23455788-23455807 | MS.gene011569:CDS | 40.0% | |
| GGTAGGAAAATCAGTAGCAA+AGG | - | chr8.4:23454675-23454694 | MS.gene011569:intron | 40.0% | |
| GTAGGAGCAAATGCTTTGAT+GGG | - | chr8.4:23454166-23454185 | MS.gene011569:intron | 40.0% | |
| GTTATAGCATTACAGCGTTG+TGG | - | chr8.4:23453488-23453507 | MS.gene011569:intron | 40.0% | |
| TATGCTCATTGCAGGCTTTA+GGG | + | chr8.4:23454527-23454546 | None:intergenic | 40.0% | |
| TCAAACTTCCATTGTCTTGG+AGG | - | chr8.4:23454890-23454909 | MS.gene011569:intron | 40.0% | |
| TCCTTCCATAACAGCAATAG+TGG | + | chr8.4:23453972-23453991 | None:intergenic | 40.0% | |
| TCGTTCCACATTGACATTTC+TGG | - | chr8.4:23453646-23453665 | MS.gene011569:intron | 40.0% | |
| TTATGCTCATTGCAGGCTTT+AGG | + | chr8.4:23454528-23454547 | None:intergenic | 40.0% | |
| ! | AATGTAGGGATCAGGCTTTT+TGG | - | chr8.4:23455273-23455292 | MS.gene011569:intron | 40.0% |
| ! | ATGTAGGGATCAGGCTTTTT+GGG | - | chr8.4:23455274-23455293 | MS.gene011569:intron | 40.0% |
| ! | CAATTTCAAGTGCCTTGGAA+TGG | + | chr8.4:23455173-23455192 | None:intergenic | 40.0% |
| ! | GATGCTTAGCGTAATTTGTC+AGG | - | chr8.4:23453235-23453254 | MS.gene011569:intron | 40.0% |
| ! | TGTACCCACTATTGCTGTTA+TGG | - | chr8.4:23453964-23453983 | MS.gene011569:CDS | 40.0% |
| ! | TGTTTCTTTTTGTGGGGAAG+GGG | - | chr8.4:23453806-23453825 | MS.gene011569:intron | 40.0% |
| ! | TTCCACATTGACATTTCTGG+AGG | - | chr8.4:23453649-23453668 | MS.gene011569:intron | 40.0% |
| !! | ACTATGCTGGTTTCAAAGCT+CGG | + | chr8.4:23453915-23453934 | None:intergenic | 40.0% |
| !! | GTGTCGACTGTCAACAAAAT+GGG | + | chr8.4:23453893-23453912 | None:intergenic | 40.0% |
| !!! | GGGTTTCGAAGTTTTGAAGT+AGG | + | chr8.4:23452740-23452759 | None:intergenic | 40.0% |
| AACACAGCGACTACCTAGAT+TGG | - | chr8.4:23454654-23454673 | MS.gene011569:CDS | 45.0% | |
| AAGAGCTATTAACGAGGGAG+TGG | - | chr8.4:23455794-23455813 | MS.gene011569:CDS | 45.0% | |
| AAGTGAACCCTCCAAGACAA+TGG | + | chr8.4:23454901-23454920 | None:intergenic | 45.0% | |
| ATTGTCTTGGAGGGTTCACT+TGG | - | chr8.4:23454900-23454919 | MS.gene011569:intron | 45.0% | |
| CGTAGGAGCAAATGCTTTGA+TGG | - | chr8.4:23454165-23454184 | MS.gene011569:intron | 45.0% | |
| GGGAAAAGCAGAGAGATGAT+TGG | + | chr8.4:23455070-23455089 | None:intergenic | 45.0% | |
| GTCAAGCTTCACAATCTCAC+TGG | - | chr8.4:23452817-23452836 | MS.gene011569:CDS | 45.0% | |
| GTCATCTCATGTTGAACTCC+AGG | - | chr8.4:23454948-23454967 | MS.gene011569:intron | 45.0% | |
| GTTATGGAAGGAGTAGCTCT+TGG | - | chr8.4:23453980-23453999 | MS.gene011569:intron | 45.0% | |
| TAAAGATCGACTGGAAGGCT+TGG | - | chr8.4:23455878-23455897 | MS.gene011569:CDS | 45.0% | |
| TAAGCATCATCGCCGTTAGT+CGG | + | chr8.4:23455091-23455110 | None:intergenic | 45.0% | |
| TAGCCATCCTTACTGCTACA+GGG | + | chr8.4:23455773-23455792 | None:intergenic | 45.0% | |
| TTAGCCATCCTTACTGCTAC+AGG | + | chr8.4:23455774-23455793 | None:intergenic | 45.0% | |
| TTATCTGATCACAGGAACGC+AGG | - | chr8.4:23453582-23453601 | MS.gene011569:intron | 45.0% | |
| TTGCTGAAAAGCGGAAACCA+AGG | - | chr8.4:23455907-23455926 | MS.gene011569:CDS | 45.0% | |
| ! | ATGCTCATTGCAGGCTTTAG+GGG | + | chr8.4:23454526-23454545 | None:intergenic | 45.0% |
| ! | CAAGGCACTTGAAATTGCTC+GGG | - | chr8.4:23455176-23455195 | MS.gene011569:intron | 45.0% |
| ! | CCAAGGCACTTGAAATTGCT+CGG | - | chr8.4:23455175-23455194 | MS.gene011569:intron | 45.0% |
| ! | CCCACTATTGCTGTTATGGA+AGG | - | chr8.4:23453968-23453987 | MS.gene011569:CDS | 45.0% |
| ! | GTCAATTACTGTGTTGCTGC+TGG | - | chr8.4:23455141-23455160 | MS.gene011569:intron | 45.0% |
| ! | GTGCCGTTATTTGACAACAC+TGG | + | chr8.4:23453373-23453392 | None:intergenic | 45.0% |
| ! | TGGCTGCATTTGCTGAAAAG+CGG | - | chr8.4:23455898-23455917 | MS.gene011569:CDS | 45.0% |
| ! | TTGATCCGCAGTTTAGTTCC+CGG | - | chr8.4:23453134-23453153 | MS.gene011569:intron | 45.0% |
| !! | AATCTCACTGGCTCAGATTC+CGG | - | chr8.4:23452829-23452848 | MS.gene011569:CDS | 45.0% |
| !! | ACAGGACTTGCTATAATCCC+TGG | - | chr8.4:23454199-23454218 | MS.gene011569:intron | 45.0% |
| !! | ATGGGTTTGGTGCTGATGAT+AGG | + | chr8.4:23452761-23452780 | None:intergenic | 45.0% |
| !! | CAGGACTTGCTATAATCCCT+GGG | - | chr8.4:23454200-23454219 | MS.gene011569:intron | 45.0% |
| !! | GGTGTCGACTGTCAACAAAA+TGG | + | chr8.4:23453894-23453913 | None:intergenic | 45.0% |
| !! | TCTCTGCTTTTCCCGACTAA+CGG | - | chr8.4:23455076-23455095 | MS.gene011569:intron | 45.0% |
| !! | TCTTGGTGGTGGACTTGAAA+TGG | - | chr8.4:23453997-23454016 | MS.gene011569:intron | 45.0% |
| !! | TGGGTTTGGTGCTGATGATA+GGG | + | chr8.4:23452760-23452779 | None:intergenic | 45.0% |
| !! | TGGTGGACTTGAAATGGCTT+TGG | - | chr8.4:23454003-23454022 | MS.gene011569:intron | 45.0% |
| !!! | TATTTTTTTATTTTTTATTC+AGG | - | chr8.4:23453934-23453953 | MS.gene011569:CDS | 5.0% |
| AAGCATCATCGCCGTTAGTC+GGG | + | chr8.4:23455090-23455109 | None:intergenic | 50.0% | |
| AAGCGGAAACCAAGGTACAC+TGG | - | chr8.4:23455915-23455934 | MS.gene011569:CDS | 50.0% | |
| AATAGGGCCCTGTAGCAGTA+AGG | - | chr8.4:23455763-23455782 | MS.gene011569:intron | 50.0% | |
| AATCTTGTCATGCACAGGGC+AGG | - | chr8.4:23454628-23454647 | MS.gene011569:CDS | 50.0% | |
| ATACCCCGGGAACTAAACTG+CGG | + | chr8.4:23453142-23453161 | None:intergenic | 50.0% | |
| ATAGGGAAAGAGATGCTGCG+TGG | - | chr8.4:23453059-23453078 | MS.gene011569:intron | 50.0% | |
| ATGGAAGGAGTAGCTCTTGG+TGG | - | chr8.4:23453983-23454002 | MS.gene011569:intron | 50.0% | |
| CAGCGACTACCTAGATTGGT+AGG | - | chr8.4:23454658-23454677 | MS.gene011569:CDS | 50.0% | |
| CTTAGCCTCGGATTGATCCA+TGG | + | chr8.4:23453609-23453628 | None:intergenic | 50.0% | |
| TCAATTGGCGCAATTGACCC+TGG | - | chr8.4:23455465-23455484 | MS.gene011569:CDS | 50.0% | |
| TTGTGCTGGGGCTGATCTAA+AGG | - | chr8.4:23453163-23453182 | MS.gene011569:intron | 50.0% | |
| ! | CCGAGCAATTTCAAGTGCCT+TGG | + | chr8.4:23455178-23455197 | None:intergenic | 50.0% |
| ! | GGCATTGAGGCGCTATCAAT+GGG | - | chr8.4:23454727-23454746 | MS.gene011569:intron | 50.0% |
| ! | TCTTTTTGTGGGGAAGGGGT+TGG | - | chr8.4:23453810-23453829 | MS.gene011569:intron | 50.0% |
| ! | TGATCCGCAGTTTAGTTCCC+GGG | - | chr8.4:23453135-23453154 | MS.gene011569:intron | 50.0% |
| ! | TGGCATTGAGGCGCTATCAA+TGG | - | chr8.4:23454726-23454745 | MS.gene011569:intron | 50.0% |
| !! | TTCCCGGGGTATTTTGTGCT+GGG | - | chr8.4:23453150-23453169 | MS.gene011569:intron | 50.0% |
| !! | TTGATGGGTTTGCCAGAGAC+AGG | - | chr8.4:23454181-23454200 | MS.gene011569:intron | 50.0% |
| AGCCCCAGCACAAAATACCC+CGG | + | chr8.4:23453156-23453175 | None:intergenic | 55.0% | |
| AGCTGAACGAAAGAGACGCG+TGG | + | chr8.4:23454268-23454287 | None:intergenic | 55.0% | |
| ATCACAGGAACGCAGGACCA+TGG | - | chr8.4:23453589-23453608 | MS.gene011569:intron | 55.0% | |
| CAGGACCATGGATCAATCCG+AGG | - | chr8.4:23453601-23453620 | MS.gene011569:intron | 55.0% | |
| GAAGGAGTAGCTCTTGGTGG+TGG | - | chr8.4:23453986-23454005 | MS.gene011569:intron | 55.0% | |
| TGCTGGTGAAGCCCATTCCA+AGG | - | chr8.4:23455158-23455177 | MS.gene011569:intron | 55.0% | |
| ! | GATCCGCAGTTTAGTTCCCG+GGG | - | chr8.4:23453136-23453155 | MS.gene011569:intron | 55.0% |
| !! | GTTCCCGGGGTATTTTGTGC+TGG | - | chr8.4:23453149-23453168 | MS.gene011569:intron | 55.0% |
| !! | TCCCGGGGTATTTTGTGCTG+GGG | - | chr8.4:23453151-23453170 | MS.gene011569:intron | 55.0% |
| CTTGTCATGCACAGGGCAGG+TGG | - | chr8.4:23454631-23454650 | MS.gene011569:CDS | 60.0% | |
| GCCCCAGCACAAAATACCCC+GGG | + | chr8.4:23453155-23453174 | None:intergenic | 60.0% | |
| GGGCCCTGTAGCAGTAAGGA+TGG | - | chr8.4:23455767-23455786 | MS.gene011569:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 23452694 | 23455944 | 23452694 | ID=MS.gene011569 |
| chr8.4 | mRNA | 23452694 | 23455944 | 23452694 | ID=MS.gene011569.t1;Parent=MS.gene011569 |
| chr8.4 | exon | 23455788 | 23455944 | 23455788 | ID=MS.gene011569.t1.exon1;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23455788 | 23455944 | 23455788 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23455454 | 23455623 | 23455454 | ID=MS.gene011569.t1.exon2;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23455454 | 23455623 | 23455454 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23454968 | 23455042 | 23454968 | ID=MS.gene011569.t1.exon3;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23454968 | 23455042 | 23454968 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23454592 | 23454682 | 23454592 | ID=MS.gene011569.t1.exon4;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23454592 | 23454682 | 23454592 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23454417 | 23454468 | 23454417 | ID=MS.gene011569.t1.exon5;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23454417 | 23454468 | 23454417 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23453890 | 23453993 | 23453890 | ID=MS.gene011569.t1.exon6;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23453890 | 23453993 | 23453890 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23453426 | 23453502 | 23453426 | ID=MS.gene011569.t1.exon7;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23453426 | 23453502 | 23453426 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| chr8.4 | exon | 23452694 | 23452870 | 23452694 | ID=MS.gene011569.t1.exon8;Parent=MS.gene011569.t1 |
| chr8.4 | CDS | 23452694 | 23452870 | 23452694 | ID=cds.MS.gene011569.t1;Parent=MS.gene011569.t1 |
| Gene Sequence |
| Protein sequence |
