AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene029856

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029856.t1 MTR_7g116360 100.000 229 0 0 1 229 1 229 9.06e-164 459
MS.gene029856.t1 MTR_7g116360 82.474 194 30 1 77 270 1 190 1.05e-103 306
MS.gene029856.t1 MTR_1g066390 100.000 228 0 0 1 228 1 228 1.18e-162 456
MS.gene029856.t1 MTR_1g066390 82.474 194 30 1 77 270 1 190 7.43e-104 307
MS.gene029856.t1 MTR_7g116360 100.000 229 0 0 1 229 49 277 1.43e-162 457
MS.gene029856.t1 MTR_7g116360 98.701 154 2 0 77 230 49 202 1.13e-102 305
MS.gene029856.t1 MTR_8g018230 99.130 230 2 0 1 230 1 230 1.86e-162 457
MS.gene029856.t1 MTR_8g018230 84.716 229 0 1 1 229 77 270 1.53e-128 371
MS.gene029856.t1 MTR_4g081010 99.563 229 1 0 1 229 77 305 2.35e-162 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 1 266 3.80e-162 457
MS.gene029856.t1 MTR_4g080797 100.000 229 0 0 1 229 153 381 1.81e-161 459
MS.gene029856.t1 MTR_4g080797 87.407 270 30 1 1 270 1 266 8.09e-161 457
MS.gene029856.t1 MTR_4g080797 87.407 270 30 1 1 270 77 342 8.09e-161 457
MS.gene029856.t1 MTR_8g018230 100.000 229 0 0 1 229 153 381 1.81e-161 459
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 1 266 8.09e-161 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 77 342 8.09e-161 457
MS.gene029856.t1 MTR_8g081020 87.407 270 30 1 1 270 1 266 2.38e-161 459
MS.gene029856.t1 MTR_8g081020 87.407 270 30 1 1 270 77 342 2.38e-161 459
MS.gene029856.t1 MTR_8g081020 100.000 228 0 0 1 228 153 380 7.50e-161 457
MS.gene029856.t1 MTR_4g081010 99.563 229 1 0 1 229 153 381 3.38e-161 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 1 266 5.06e-161 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 77 342 5.06e-161 458
MS.gene029856.t1 MTR_4g091580 99.563 229 1 0 1 229 153 381 5.71e-161 457
MS.gene029856.t1 MTR_4g091580 87.407 270 30 1 1 270 1 266 8.36e-161 457
MS.gene029856.t1 MTR_4g091580 87.037 270 31 1 1 270 77 342 2.63e-160 456
MS.gene029856.t1 MTR_4g081010 99.130 230 2 0 1 230 1 230 1.10e-160 453
MS.gene029856.t1 MTR_4g081010 100.000 168 0 0 1 168 77 244 4.65e-113 332
MS.gene029856.t1 MTR_8g018230 100.000 229 0 0 1 229 229 457 2.24e-160 459
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 1 266 9.58e-160 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 77 342 9.58e-160 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 153 418 9.58e-160 457
MS.gene029856.t1 MTR_8g018230 100.000 229 0 0 1 229 229 457 2.24e-160 459
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 1 266 9.58e-160 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 77 342 9.58e-160 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 153 418 9.58e-160 457
MS.gene029856.t1 MTR_8g018230 100.000 229 0 0 1 229 305 533 2.41e-159 459
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 1 266 1.03e-158 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 77 342 1.03e-158 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 153 418 1.03e-158 457
MS.gene029856.t1 MTR_8g018230 87.407 270 30 1 1 270 229 494 1.03e-158 457
MS.gene029856.t1 MTR_4g081010 99.563 229 1 0 1 229 305 533 5.29e-159 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 1 266 7.49e-159 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 77 342 7.49e-159 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 153 418 7.49e-159 458
MS.gene029856.t1 MTR_4g081010 87.407 270 30 1 1 270 229 494 7.49e-159 458
MS.gene029856.t1 MTR_4g091580 87.407 270 30 1 1 270 1 266 7.02e-159 458
MS.gene029856.t1 MTR_4g091580 99.130 230 2 0 1 230 77 306 8.72e-159 458
MS.gene029856.t1 MTR_4g091580 99.127 229 2 0 1 229 305 533 9.47e-158 455
MS.gene029856.t1 MTR_4g091580 86.667 270 32 1 1 270 153 418 4.07e-157 454
MS.gene029856.t1 MTR_4g091580 86.667 270 32 1 1 270 229 494 4.07e-157 454
MS.gene029856.t1 MTR_4g088495 100.000 229 0 0 1 229 609 837 1.09e-155 460
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 77 342 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 153 418 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 229 494 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 305 570 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 381 646 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 457 722 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.407 270 30 1 1 270 533 798 4.20e-155 459
MS.gene029856.t1 MTR_4g088495 87.037 270 31 1 1 270 1 266 8.42e-154 455
MS.gene029856.t1 MTR_4g088485 93.450 229 0 1 1 229 1 214 1.86e-148 419
MS.gene029856.t1 MTR_4g088485 88.961 154 2 1 77 230 1 139 1.23e-88 267
MS.gene029856.t1 MTR_6g061930 92.576 229 2 1 1 229 77 290 8.99e-146 416
MS.gene029856.t1 MTR_6g061930 91.739 230 4 1 1 230 1 215 4.83e-145 414
MS.gene029856.t1 MTR_4g080920 89.035 228 25 0 1 228 1 228 7.03e-142 403
MS.gene029856.t1 MTR_4g080920 94.375 160 9 0 77 236 1 160 8.67e-103 304
MS.gene029856.t1 MTR_8g479250 88.462 182 10 1 43 224 107 277 1.09e-95 288
MS.gene029856.t1 MTR_8g479250 64.876 242 49 5 1 230 1 218 1.15e-80 250
MS.gene029856.t1 MTR_8g479250 87.162 148 8 1 1 148 141 277 5.47e-71 225
MS.gene029856.t1 MTR_5g092700 80.263 152 30 0 1 152 1 152 1.92e-81 247
MS.gene029856.t1 MTR_5g092700 80.263 152 30 0 77 228 1 152 1.92e-81 247
MS.gene029856.t1 MTR_4g073580 80.263 152 30 0 1 152 1 152 1.92e-81 247
MS.gene029856.t1 MTR_4g073580 80.263 152 30 0 77 228 1 152 1.92e-81 247
MS.gene029856.t1 MTR_4g073580 67.033 182 30 1 1 152 1 182 9.35e-75 231
MS.gene029856.t1 MTR_4g073580 67.033 182 30 1 77 228 1 182 9.35e-75 231
MS.gene029856.t1 MTR_7g105080 98.701 77 1 0 1 77 1 77 2.78e-46 155
MS.gene029856.t1 MTR_7g105080 98.701 77 1 0 77 153 1 77 2.78e-46 155
MS.gene029856.t1 MTR_7g105080 98.701 77 1 0 153 229 1 77 3.41e-46 155
MS.gene029856.t1 MTR_3g092130 98.701 77 1 0 1 77 1 77 2.78e-46 155
MS.gene029856.t1 MTR_3g092130 98.701 77 1 0 77 153 1 77 2.78e-46 155
MS.gene029856.t1 MTR_3g092130 98.701 77 1 0 153 229 1 77 3.41e-46 155
MS.gene029856.t1 MTR_1g059690 98.701 77 1 0 1 77 1 77 2.78e-46 155
MS.gene029856.t1 MTR_1g059690 98.701 77 1 0 77 153 1 77 2.78e-46 155
MS.gene029856.t1 MTR_1g059690 98.701 77 1 0 153 229 1 77 3.41e-46 155
MS.gene029856.t1 MTR_3g092130 98.701 77 1 0 1 77 1 77 5.81e-46 155
MS.gene029856.t1 MTR_3g092130 98.701 77 1 0 77 153 1 77 5.81e-46 155
MS.gene029856.t1 MTR_3g092130 98.701 77 1 0 153 229 1 77 7.27e-46 155
MS.gene029856.t1 MTR_5g033960 97.436 78 2 0 1 78 1 78 8.15e-46 155
MS.gene029856.t1 MTR_5g033960 97.436 78 2 0 77 154 1 78 8.15e-46 155
MS.gene029856.t1 MTR_5g033960 100.000 76 0 0 153 228 1 76 1.01e-45 155
MS.gene029856.t1 MTR_8g088060 97.436 78 2 0 1 78 1 78 8.15e-46 155
MS.gene029856.t1 MTR_8g088060 97.436 78 2 0 77 154 1 78 8.15e-46 155
MS.gene029856.t1 MTR_8g088060 100.000 76 0 0 153 228 1 76 9.98e-46 155
MS.gene029856.t1 MTR_7g020840 80.822 73 14 0 328 400 245 317 8.21e-34 129
MS.gene029856.t1 MTR_3g070770 79.167 72 15 0 329 400 228 299 5.86e-32 124
MS.gene029856.t1 MTR_1g046640 65.116 86 30 0 67 152 230 315 6.25e-26 107
MS.gene029856.t1 MTR_1g046640 65.116 86 30 0 143 228 230 315 6.25e-26 107
MS.gene029856.t1 MTR_1g046640 71.053 76 22 0 1 76 240 315 6.70e-26 107
MS.gene029856.t1 MTR_5g076810 68.831 77 23 1 1 76 194 270 3.75e-25 103
MS.gene029856.t1 MTR_5g076810 68.831 77 23 1 77 152 194 270 3.75e-25 103
MS.gene029856.t1 MTR_5g076810 68.831 77 23 1 153 228 194 270 3.75e-25 103
MS.gene029856.t1 MTR_5g076660 63.855 83 30 0 67 149 256 338 8.28e-25 104
MS.gene029856.t1 MTR_5g076660 63.855 83 30 0 143 225 256 338 8.28e-25 104
MS.gene029856.t1 MTR_5g076660 69.863 73 22 0 1 73 266 338 2.33e-24 103
MS.gene029856.t1 MTR_5g067400 68.421 76 24 0 1 76 241 316 7.61e-23 98.6
MS.gene029856.t1 MTR_5g067400 68.421 76 24 0 77 152 241 316 7.61e-23 98.6
MS.gene029856.t1 MTR_5g067400 68.421 76 24 0 153 228 241 316 7.61e-23 98.6
MS.gene029856.t1 MTR_5g061310 60.000 75 30 0 1 75 2 76 1.62e-22 90.9
MS.gene029856.t1 MTR_5g061310 60.000 75 30 0 77 151 2 76 1.62e-22 90.9
MS.gene029856.t1 MTR_5g061310 60.000 75 30 0 153 227 2 76 1.62e-22 90.9
MS.gene029856.t1 MTR_3g070755 84.000 50 8 0 351 400 1 50 2.02e-22 91.3
MS.gene029856.t1 MTR_5g076370 59.036 83 34 0 67 149 257 339 3.25e-21 94.4
MS.gene029856.t1 MTR_5g076370 59.036 83 34 0 143 225 257 339 3.25e-21 94.4
MS.gene029856.t1 MTR_5g076370 64.384 73 26 0 1 73 267 339 8.03e-21 93.2
MS.gene029856.t1 MTR_5g076505 61.333 75 29 0 1 75 240 314 2.82e-20 91.3
MS.gene029856.t1 MTR_5g076505 61.333 75 29 0 77 151 240 314 2.82e-20 91.3
MS.gene029856.t1 MTR_5g076505 61.333 75 29 0 153 227 240 314 2.82e-20 91.3
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 1 76 171 246 3.48e-20 89.4
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 77 152 171 246 3.48e-20 89.4
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 153 228 171 246 3.48e-20 89.4
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 6.05e-20 90.1
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 77 152 240 315 6.05e-20 90.1
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 153 228 240 315 6.05e-20 90.1
MS.gene029856.t1 MTR_2g038430 61.333 75 29 0 1 75 268 342 7.15e-20 90.5
MS.gene029856.t1 MTR_2g038430 61.333 75 29 0 77 151 268 342 7.15e-20 90.5
MS.gene029856.t1 MTR_2g038430 61.333 75 29 0 153 227 268 342 7.15e-20 90.5
MS.gene029856.t1 MTR_5g076720 65.333 75 26 0 1 75 315 389 7.67e-20 90.9
MS.gene029856.t1 MTR_5g076720 65.333 75 26 0 77 151 315 389 7.67e-20 90.9
MS.gene029856.t1 MTR_5g076720 65.333 75 26 0 153 227 315 389 7.67e-20 90.9
MS.gene029856.t1 MTR_5g076740 55.556 81 35 1 151 230 84 164 7.89e-20 86.3
MS.gene029856.t1 MTR_5g076740 57.692 78 32 1 75 151 84 161 2.11e-19 85.1
MS.gene029856.t1 MTR_5g076740 59.211 76 30 1 1 75 86 161 2.55e-19 84.7
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 1 76 240 315 8.56e-20 89.7
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 77 152 240 315 8.56e-20 89.7
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 153 228 240 315 8.56e-20 89.7
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 1 76 271 346 1.30e-19 89.7
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 77 152 271 346 1.30e-19 89.7
MS.gene029856.t1 MTR_1g046650 57.895 76 32 0 153 228 271 346 1.30e-19 89.7
MS.gene029856.t1 MTR_2g038420 60.000 75 30 0 1 75 260 334 2.26e-19 89.0
MS.gene029856.t1 MTR_2g038420 60.000 75 30 0 77 151 260 334 2.26e-19 89.0
MS.gene029856.t1 MTR_2g038420 60.000 75 30 0 153 227 260 334 2.26e-19 89.0
MS.gene029856.t1 MTR_4g080783 53.409 88 11 1 44 101 7 94 3.22e-19 82.4
MS.gene029856.t1 MTR_4g080783 53.409 88 11 1 120 177 7 94 3.22e-19 82.4
MS.gene029856.t1 MTR_7g094390 54.118 85 39 0 67 151 392 476 3.18e-18 86.7
MS.gene029856.t1 MTR_7g094390 54.118 85 39 0 143 227 392 476 3.18e-18 86.7
MS.gene029856.t1 MTR_7g094390 58.667 75 31 0 1 75 402 476 4.38e-18 86.3
MS.gene029856.t1 MTR_5g076520 55.696 79 34 1 153 230 244 322 1.37e-17 83.6
MS.gene029856.t1 MTR_5g076520 57.333 75 31 1 1 74 244 318 3.22e-17 82.4
MS.gene029856.t1 MTR_5g076520 57.333 75 31 1 77 150 244 318 3.22e-17 82.4
MS.gene029856.t1 MTR_7g024290 55.814 86 37 1 67 151 231 316 1.04e-16 80.9
MS.gene029856.t1 MTR_7g024290 55.814 86 37 1 143 227 231 316 1.04e-16 80.9
MS.gene029856.t1 MTR_7g024290 60.526 76 29 1 1 75 241 316 1.37e-16 80.5
MS.gene029856.t1 MTR_6g021910 52.174 69 32 1 333 400 255 323 1.42e-15 78.2
MS.gene029856.t1 MTR_4g009980 55.224 67 30 0 9 75 4 70 1.47e-15 71.2
MS.gene029856.t1 MTR_4g009980 55.224 67 30 0 85 151 4 70 1.47e-15 71.2
MS.gene029856.t1 MTR_4g009980 55.224 67 30 0 161 227 4 70 1.47e-15 71.2
MS.gene029856.t1 MTR_5g061290 53.333 75 35 0 1 75 252 326 1.53e-15 77.4
MS.gene029856.t1 MTR_5g061290 53.333 75 35 0 77 151 252 326 1.53e-15 77.4
MS.gene029856.t1 MTR_5g061290 53.333 75 35 0 153 227 252 326 1.53e-15 77.4
MS.gene029856.t1 MTR_3g091400 32.484 157 102 4 72 225 22 177 6.43e-15 77.0
MS.gene029856.t1 MTR_3g091400 33.562 146 94 3 7 149 32 177 9.04e-15 76.6
MS.gene029856.t1 MTR_8g027610 31.953 169 103 6 65 226 26 189 6.57e-15 77.0
MS.gene029856.t1 MTR_8g027610 31.414 191 113 8 3 184 38 219 2.09e-14 75.5
MS.gene029856.t1 MTR_2g088760 26.638 229 145 5 15 221 14 241 6.28e-14 71.6
MS.gene029856.t1 MTR_5g076760 59.649 57 23 0 11 67 5 61 7.42e-14 67.0
MS.gene029856.t1 MTR_5g076760 59.649 57 23 0 87 143 5 61 7.42e-14 67.0
MS.gene029856.t1 MTR_5g076760 59.649 57 23 0 163 219 5 61 7.42e-14 67.0
MS.gene029856.t1 MTR_5g076350 50.000 74 36 1 1 73 8 81 1.08e-13 66.6
MS.gene029856.t1 MTR_5g076350 50.000 74 36 1 77 149 8 81 1.08e-13 66.6
MS.gene029856.t1 MTR_5g076350 50.000 74 36 1 153 225 8 81 1.08e-13 66.6
MS.gene029856.t1 MTR_7g117395 32.278 158 100 5 1 152 37 193 1.23e-13 72.8
MS.gene029856.t1 MTR_7g117395 32.278 158 100 5 77 228 37 193 1.23e-13 72.8
MS.gene029856.t1 MTR_5g076780 58.333 60 25 0 15 74 4 63 1.24e-13 65.9
MS.gene029856.t1 MTR_5g076780 58.333 60 25 0 91 150 4 63 1.24e-13 65.9
MS.gene029856.t1 MTR_5g076780 58.333 60 25 0 167 226 4 63 1.24e-13 65.9
MS.gene029856.t1 MTR_1g030760 44.928 69 37 1 333 400 251 319 8.17e-13 69.7
MS.gene029856.t1 MTR_5g076340 52.000 75 34 2 1 73 9 83 8.45e-13 64.3
MS.gene029856.t1 MTR_5g076340 52.000 75 34 2 77 149 9 83 8.45e-13 64.3
MS.gene029856.t1 MTR_5g076340 52.000 75 34 2 153 225 9 83 8.45e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene029856.t1 AT4G05050 100.000 229 0 0 1 229 1 229 9.49e-164 459
MS.gene029856.t1 AT4G05050 82.474 194 30 1 77 270 1 190 1.10e-103 306
MS.gene029856.t1 AT4G05050 100.000 229 0 0 1 229 1 229 9.49e-164 459
MS.gene029856.t1 AT4G05050 82.474 194 30 1 77 270 1 190 1.10e-103 306
MS.gene029856.t1 AT4G05050 100.000 229 0 0 1 229 1 229 9.49e-164 459
MS.gene029856.t1 AT4G05050 82.474 194 30 1 77 270 1 190 1.10e-103 306
MS.gene029856.t1 AT4G02890 100.000 229 0 0 1 229 1 229 9.49e-164 459
MS.gene029856.t1 AT4G02890 82.474 194 30 1 77 270 1 190 1.10e-103 306
MS.gene029856.t1 AT4G02890 100.000 229 0 0 1 229 1 229 9.49e-164 459
MS.gene029856.t1 AT4G02890 82.474 194 30 1 77 270 1 190 1.10e-103 306
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 77 305 1.02e-162 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 5.00e-162 457
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 77 305 1.02e-162 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 5.00e-162 457
MS.gene029856.t1 AT4G02890 100.000 229 0 0 1 229 77 305 1.02e-162 459
MS.gene029856.t1 AT4G02890 87.407 270 30 1 1 270 1 266 5.00e-162 457
MS.gene029856.t1 AT4G02890 100.000 229 0 0 1 229 77 305 1.02e-162 459
MS.gene029856.t1 AT4G02890 87.407 270 30 1 1 270 1 266 5.00e-162 457
MS.gene029856.t1 AT5G03240 87.407 270 30 1 1 270 1 266 4.03e-162 457
MS.gene029856.t1 AT5G03240 100.000 228 0 0 1 228 77 304 1.02e-161 457
MS.gene029856.t1 AT5G03240 87.407 270 30 1 1 270 1 266 4.03e-162 457
MS.gene029856.t1 AT5G03240 100.000 228 0 0 1 228 77 304 1.02e-161 457
MS.gene029856.t1 AT5G03240 87.407 270 30 1 1 270 1 266 4.03e-162 457
MS.gene029856.t1 AT5G03240 100.000 228 0 0 1 228 77 304 1.02e-161 457
MS.gene029856.t1 AT5G20620 87.407 270 30 1 1 270 1 266 4.03e-162 457
MS.gene029856.t1 AT5G20620 100.000 228 0 0 1 228 77 304 1.02e-161 457
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 153 381 1.90e-161 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 8.48e-161 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 77 342 8.48e-161 457
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 153 381 1.90e-161 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 8.48e-161 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 77 342 8.48e-161 457
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 153 381 1.90e-161 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 8.48e-161 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 77 342 8.48e-161 457
MS.gene029856.t1 AT5G20620 87.407 270 30 1 1 270 1 266 4.92e-161 458
MS.gene029856.t1 AT5G20620 87.407 270 30 1 1 270 77 342 4.92e-161 458
MS.gene029856.t1 AT5G20620 100.000 228 0 0 1 228 153 380 1.29e-160 457
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 229 457 2.35e-160 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 1.00e-159 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 77 342 1.00e-159 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 153 418 1.00e-159 457
MS.gene029856.t1 AT4G05320 100.000 229 0 0 1 229 229 457 2.35e-160 459
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 1 266 1.00e-159 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 77 342 1.00e-159 457
MS.gene029856.t1 AT4G05320 87.407 270 30 1 1 270 153 418 1.00e-159 457
MS.gene029856.t1 AT1G65350 86.667 270 31 2 1 270 1 265 2.55e-156 444
MS.gene029856.t1 AT1G65350 91.736 242 5 2 1 228 77 317 1.13e-147 422
MS.gene029856.t1 AT1G55060 94.298 228 13 0 1 228 1 228 6.31e-153 431
MS.gene029856.t1 AT1G55060 91.558 154 13 0 77 230 1 154 2.64e-96 288
MS.gene029856.t1 AT5G37640 89.754 244 18 2 1 243 79 316 7.08e-149 425
MS.gene029856.t1 AT5G37640 87.288 236 30 0 1 236 3 238 1.79e-142 409
MS.gene029856.t1 AT3G09790 81.624 234 36 2 1 227 3 236 1.34e-120 363
MS.gene029856.t1 AT3G09790 72.103 233 58 1 1 226 393 625 5.56e-100 310
MS.gene029856.t1 AT3G09790 69.547 243 63 3 1 236 238 476 1.11e-96 302
MS.gene029856.t1 AT3G09790 70.886 237 55 4 1 223 155 391 3.72e-95 298
MS.gene029856.t1 AT3G09790 69.456 239 60 3 1 230 319 553 1.62e-94 296
MS.gene029856.t1 AT3G09790 85.625 160 23 0 77 236 3 162 7.75e-84 268
MS.gene029856.t1 AT3G09790 81.624 234 36 2 1 227 3 236 1.34e-120 363
MS.gene029856.t1 AT3G09790 72.103 233 58 1 1 226 393 625 5.56e-100 310
MS.gene029856.t1 AT3G09790 69.547 243 63 3 1 236 238 476 1.11e-96 302
MS.gene029856.t1 AT3G09790 70.886 237 55 4 1 223 155 391 3.72e-95 298
MS.gene029856.t1 AT3G09790 69.456 239 60 3 1 230 319 553 1.62e-94 296
MS.gene029856.t1 AT3G09790 85.625 160 23 0 77 236 3 162 7.75e-84 268
MS.gene029856.t1 AT4G05050 100.000 153 0 0 77 229 1 153 2.51e-105 308
MS.gene029856.t1 AT4G05050 100.000 152 0 0 1 152 1 152 2.83e-104 305
MS.gene029856.t1 AT4G05050 97.436 78 2 0 153 230 1 78 6.15e-46 155
MS.gene029856.t1 AT4G05320 100.000 153 0 0 77 229 1 153 2.51e-105 308
MS.gene029856.t1 AT4G05320 100.000 152 0 0 1 152 1 152 2.83e-104 305
MS.gene029856.t1 AT4G05320 97.436 78 2 0 153 230 1 78 6.15e-46 155
MS.gene029856.t1 AT1G31340 81.046 153 29 0 77 229 1 153 5.50e-83 251
MS.gene029856.t1 AT1G31340 80.921 152 29 0 1 152 1 152 6.54e-82 248
MS.gene029856.t1 AT2G35635 79.739 153 31 0 1 153 1 153 2.27e-81 246
MS.gene029856.t1 AT2G35635 79.739 153 31 0 77 229 1 153 2.98e-81 246
MS.gene029856.t1 AT3G52590 98.701 77 1 0 1 77 1 77 3.01e-46 155
MS.gene029856.t1 AT3G52590 98.701 77 1 0 77 153 1 77 3.01e-46 155
MS.gene029856.t1 AT3G52590 98.701 77 1 0 153 229 1 77 3.46e-46 155
MS.gene029856.t1 AT2G36170 98.701 77 1 0 1 77 1 77 3.01e-46 155
MS.gene029856.t1 AT2G36170 98.701 77 1 0 77 153 1 77 3.01e-46 155
MS.gene029856.t1 AT2G36170 98.701 77 1 0 153 229 1 77 3.46e-46 155
MS.gene029856.t1 AT2G47110 97.436 78 2 0 1 78 1 78 9.08e-46 155
MS.gene029856.t1 AT2G47110 97.436 78 2 0 77 154 1 78 9.08e-46 155
MS.gene029856.t1 AT2G47110 100.000 76 0 0 153 228 1 76 1.10e-45 155
MS.gene029856.t1 AT2G47110 97.436 78 2 0 1 78 1 78 9.08e-46 155
MS.gene029856.t1 AT2G47110 97.436 78 2 0 77 154 1 78 9.08e-46 155
MS.gene029856.t1 AT2G47110 100.000 76 0 0 153 228 1 76 1.10e-45 155
MS.gene029856.t1 AT3G62250 97.436 78 2 0 1 78 1 78 9.99e-46 155
MS.gene029856.t1 AT3G62250 97.436 78 2 0 77 154 1 78 9.99e-46 155
MS.gene029856.t1 AT3G62250 100.000 76 0 0 153 228 1 76 1.24e-45 155
MS.gene029856.t1 AT1G23410 100.000 76 0 0 1 76 1 76 2.11e-45 154
MS.gene029856.t1 AT1G23410 100.000 76 0 0 77 152 1 76 2.11e-45 154
MS.gene029856.t1 AT1G23410 100.000 76 0 0 153 228 1 76 2.11e-45 154
MS.gene029856.t1 AT1G53930 49.091 165 54 7 8 149 1 158 9.66e-33 121
MS.gene029856.t1 AT1G53930 49.091 165 54 7 84 225 1 158 9.66e-33 121
MS.gene029856.t1 AT1G53930 75.342 73 18 0 1 73 86 158 1.04e-29 113
MS.gene029856.t1 AT1G53950 41.875 160 52 3 71 223 14 139 1.49e-25 101
MS.gene029856.t1 AT1G53950 43.506 154 46 3 1 147 20 139 2.18e-25 100
MS.gene029856.t1 AT1G11980 55.263 76 34 0 1 76 1 76 4.62e-22 89.7
MS.gene029856.t1 AT1G11980 55.263 76 34 0 77 152 1 76 4.62e-22 89.7
MS.gene029856.t1 AT1G11980 55.263 76 34 0 153 228 1 76 4.62e-22 89.7
MS.gene029856.t1 AT2G46500 31.313 198 116 4 7 195 40 226 1.60e-18 87.4
MS.gene029856.t1 AT2G46500 35.862 145 90 2 83 224 40 184 2.50e-18 86.7
MS.gene029856.t1 AT2G46500 31.313 198 116 4 7 195 40 226 3.05e-18 87.0
MS.gene029856.t1 AT2G46500 35.862 145 90 2 83 224 40 184 4.19e-18 86.7
MS.gene029856.t1 AT2G46500 31.313 198 116 4 7 195 40 226 3.05e-18 87.0
MS.gene029856.t1 AT2G46500 35.862 145 90 2 83 224 40 184 4.19e-18 86.7
MS.gene029856.t1 AT1G53945 38.356 146 53 3 1 143 1 112 2.50e-17 78.2
MS.gene029856.t1 AT1G53945 38.356 146 53 3 77 219 1 112 2.50e-17 78.2
MS.gene029856.t1 AT5G24240 33.793 145 91 3 7 147 38 181 9.83e-14 73.2
MS.gene029856.t1 AT5G24240 33.793 145 91 3 83 223 38 181 9.83e-14 73.2
MS.gene029856.t1 AT5G24240 33.793 145 91 3 7 147 38 181 9.83e-14 73.2
MS.gene029856.t1 AT5G24240 33.793 145 91 3 83 223 38 181 9.83e-14 73.2
MS.gene029856.t1 AT2G01410 50.877 57 28 0 344 400 276 332 1.47e-12 68.9

Find 109 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCTTTGTCTTGGATTT+TGG 0.081719 1.4:-53350375 None:intergenic
GGTGAAGCGTGGACTCTTTC+TGG 0.156782 1.4:-53350475 None:intergenic
GATGAAGCGTACTCTCTTTC+TGG 0.186529 1.4:-53350703 None:intergenic
TGTCAGAAGATTCAACTTCT+AGG 0.245547 1.4:-53350562 None:intergenic
TGGAAACTCTCAGATGGTTT+AGG 0.258288 1.4:+53353502 MS.gene029856:intron
ACATTTGAATGAAGGGATAT+TGG 0.277814 1.4:+53354006 MS.gene029856:CDS
GAAGGGATATTGGGAGATTC+TGG 0.289091 1.4:+53354016 MS.gene029856:CDS
GGAAACTCTCAGATGGTTTA+GGG 0.289134 1.4:+53353503 MS.gene029856:intron
CATGAAGATTATGGATAGTT+GGG 0.295454 1.4:+53353886 MS.gene029856:CDS
TGGAAATTCTTCGATGGTTT+GGG 0.297388 1.4:+53352756 MS.gene029856:CDS
GGGAGTGGTGTTTGAGAGGT+TGG 0.298210 1.4:+53353913 MS.gene029856:CDS
CAACGTGAAGGCGAAGATTC+AGG 0.299521 1.4:+53350592 MS.gene029856:CDS
TTGGAAATTCTTCGATGGTT+TGG 0.309898 1.4:+53352755 MS.gene029856:CDS
CAACAGAGATTGATCTTTGC+AGG 0.323440 1.4:+53350638 MS.gene029856:CDS
GTGGAATTCCTTCTTTGTCT+TGG 0.327570 1.4:-53350382 None:intergenic
CAAATCAAAATGTGTTGTTT+AGG 0.329795 1.4:+53353586 MS.gene029856:CDS
GAGATTCTGGTAGAGAGTTT+TGG 0.337456 1.4:+53354029 MS.gene029856:CDS
ACCGTCTTCAAGTTGTTTGC+CGG 0.342409 1.4:-53350429 None:intergenic
CAGCAGCGATTGATCTTTGC+TGG 0.350825 1.4:+53350866 MS.gene029856:CDS
CATTTGAATGAAGGGATATT+GGG 0.351364 1.4:+53354007 MS.gene029856:CDS
CTCTAGAGTAATCGTCTTCC+CGG 0.364714 1.4:-53350774 None:intergenic
TAACGTGAAGGCCAAGATTC+AGG 0.364904 1.4:+53350820 MS.gene029856:CDS
TCCCTCCTTATCCTGAATCT+TGG 0.378200 1.4:-53350831 None:intergenic
TCATGAAGATTATGGATAGT+TGG 0.397043 1.4:+53353885 MS.gene029856:CDS
CACTGGAAAGACCTCCTCAT+TGG 0.421382 1.4:-53353196 None:intergenic
GGATAGTTGGGGAGAGGGAG+TGG 0.427321 1.4:+53353898 MS.gene029856:CDS
CTACGCTTCATCTTGTTCTC+AGG 0.433901 1.4:+53350942 MS.gene029856:CDS
ATCTTCGTCAAAACCCTAAC+GGG 0.435437 1.4:+53350527 MS.gene029856:CDS
AGAGGTTGGAGATTGATGTT+CGG 0.440114 1.4:+53353927 MS.gene029856:CDS
GAGAGGGAGTGGTGTTTGAG+AGG 0.443909 1.4:+53353909 MS.gene029856:CDS
TTGGTGGAAGTCGGAGAGAA+AGG 0.465697 1.4:+53353962 MS.gene029856:CDS
AAGATGAGACGCTGTTGGTC+AGG 0.467589 1.4:-53350404 None:intergenic
ATATTTGTGAAGACGTTGAC+CGG 0.468015 1.4:+53350755 MS.gene029856:CDS
AAGATCAATCGCTGCTGATC+CGG 0.471663 1.4:-53350860 None:intergenic
GAAGGCCAAGATTCAGGATA+AGG 0.481717 1.4:+53350826 MS.gene029856:CDS
GTCAGAAGATTCAACTTCTA+GGG 0.481736 1.4:-53350561 None:intergenic
GGGAGATTGTATGTGTTGTA+TGG 0.487752 1.4:+53353983 MS.gene029856:CDS
GAAGGCGAAGATTCAGGATA+AGG 0.494413 1.4:+53350598 MS.gene029856:CDS
ATTATGGATAGTTGGGGAGA+GGG 0.494966 1.4:+53353893 MS.gene029856:CDS
GCAGGGAAGCAGTTGGAAGA+TGG 0.499100 1.4:+53350656 MS.gene029856:CDS
AAGATCAATCTCTGTTGATC+CGG 0.499445 1.4:-53350632 None:intergenic
TTGTATGGACATTTGAATGA+AGG 0.508613 1.4:+53353998 MS.gene029856:CDS
TCGGAGGTTTCCGACGTTGG+TGG 0.513820 1.4:+53353946 MS.gene029856:CDS
GCTGTGGTTCATGAAGATTA+TGG 0.520586 1.4:+53353877 MS.gene029856:CDS
GCCAAAATCCAAGACAAAGA+AGG 0.520645 1.4:+53350374 MS.gene029856:CDS
TTTGCATGCCACCGCGGAGA+CGG 0.522000 1.4:-53350505 None:intergenic
GACGTTGTCAATTGTGTCAG+AGG 0.523066 1.4:-53350348 None:intergenic
GATTATGGATAGTTGGGGAG+AGG 0.527190 1.4:+53353892 MS.gene029856:CDS
GCTGGGAAACAGCTTGAGGA+TGG 0.536276 1.4:+53350884 MS.gene029856:CDS
GGTTGGAGATTGATGTTCGG+AGG 0.540461 1.4:+53353930 MS.gene029856:CDS
TGTTCGGAGGTTTCCGACGT+TGG 0.546004 1.4:+53353943 MS.gene029856:CDS
TGGTGGAAGTCGGAGAGAAA+GGG 0.553592 1.4:+53353963 MS.gene029856:CDS
GGAAACAGCTTGAGGATGGA+AGG 0.556709 1.4:+53350888 MS.gene029856:CDS
GCTTCAGCCATGCATAATGT+TGG 0.557403 1.4:+53353528 MS.gene029856:CDS
ATGAACCACAGCTTGTTCAT+CGG 0.557463 1.4:-53353866 None:intergenic
ATCAATCTCTGTTGATCCGG+TGG 0.558746 1.4:-53350629 None:intergenic
AGCAGCGATTGATCTTTGCT+GGG 0.565506 1.4:+53350867 MS.gene029856:CDS
ATTCATTGGAAATTCTTCGA+TGG 0.566461 1.4:+53352750 MS.gene029856:CDS
GAAACTGCTCTTCCTCCCAC+TGG 0.567143 1.4:-53353213 None:intergenic
ATGAGACGCTGTTGGTCAGG+TGG 0.568053 1.4:-53350401 None:intergenic
GGCGAAGATTCAGGATAAGG+AGG 0.572225 1.4:+53350601 MS.gene029856:CDS
TTTCCGACGTTGGTGGAAGT+CGG 0.572574 1.4:+53353953 MS.gene029856:CDS
ATCAATCGCTGCTGATCCGG+TGG 0.573707 1.4:-53350857 None:intergenic
CAACAGCGTCTCATCTTCGC+CGG 0.576220 1.4:+53350410 MS.gene029856:CDS
GAAAAGAGGAGACCTTTAGC+AGG 0.577944 1.4:-53353291 None:intergenic
GATCTTTGCAGGGAAGCAGT+TGG 0.579236 1.4:+53350649 MS.gene029856:CDS
TAGTTCTGAGGTTACGAGGT+GGG 0.580752 1.4:+53350726 MS.gene029856:CDS
GGCCAAGATTCAGGATAAGG+AGG 0.581855 1.4:+53350829 MS.gene029856:CDS
CAGATGAGTTCAGACACGTC+AGG 0.583467 1.4:+53353256 MS.gene029856:CDS
TTCTCTGCCAACATTATGCA+TGG 0.586584 1.4:-53353535 None:intergenic
CATCTAGTTCTGAGGTTACG+AGG 0.586902 1.4:+53350722 MS.gene029856:CDS
CTCGTTCTCCGTCTCCGCGG+TGG 0.589129 1.4:+53350497 MS.gene029856:CDS
AACAGAGATTGATCTTTGCA+GGG 0.589753 1.4:+53350639 MS.gene029856:CDS
TGTCGCCGATGAACAAGCTG+TGG 0.594520 1.4:+53353861 MS.gene029856:CDS
ATGAAGATTATGGATAGTTG+GGG 0.598681 1.4:+53353887 MS.gene029856:CDS
GTACGCTTCATCTAGTTCTG+AGG 0.603873 1.4:+53350714 MS.gene029856:CDS
TGTATGGACATTTGAATGAA+GGG 0.604435 1.4:+53353999 MS.gene029856:CDS
GGATAAGGAGGGAATTCCAC+CGG 0.604505 1.4:+53350613 MS.gene029856:CDS
GGATAAGGAGGGAATTCCAC+CGG 0.604505 1.4:+53350841 MS.gene029856:CDS
CGGCGAAGATGAGACGCTGT+TGG 0.614239 1.4:-53350409 None:intergenic
CGGGAAGACGATTACTCTAG+AGG 0.614793 1.4:+53350775 MS.gene029856:CDS
CTTTGCTGGGAAACAGCTTG+AGG 0.616725 1.4:+53350880 MS.gene029856:CDS
TATTTGTGAAGACGTTGACC+GGG 0.620791 1.4:+53350756 MS.gene029856:CDS
CATCTTGTTCTCAGGCTCCG+TGG 0.623693 1.4:+53350950 MS.gene029856:CDS
TTGTGACGACAATGTGGCAG+TGG 0.624961 1.4:+53353835 MS.gene029856:CDS
TGACACAATCGACAACGTGA+AGG 0.625778 1.4:+53350580 MS.gene029856:CDS
CACCGCGGAGACGGAGAACG+AGG 0.627617 1.4:-53350496 None:intergenic
AGAACACTTCTTGCAAAATG+TGG 0.627661 1.4:+53353554 MS.gene029856:CDS
CGTCCCTGGGCCCACCACCA+CGG 0.630438 1.4:-53350967 None:intergenic
GCGAAGATTCAGGATAAGGA+GGG 0.632025 1.4:+53350602 MS.gene029856:CDS
AATCTTCGTCAAAACCCTAA+CGG 0.632751 1.4:+53350526 MS.gene029856:CDS
CAATGAGGAGGTCTTTCCAG+TGG 0.633604 1.4:+53353197 MS.gene029856:CDS
GCCAAGATTCAGGATAAGGA+GGG 0.635207 1.4:+53350830 MS.gene029856:CDS
ACGGAGAACGAGGTGAAGCG+TGG 0.639022 1.4:-53350486 None:intergenic
GAAGACGATTACTCTAGAGG+TGG 0.644953 1.4:+53350778 MS.gene029856:CDS
TGATACTATTGATAACGTGA+AGG 0.645021 1.4:+53350808 MS.gene029856:CDS
CTTGTTCTCAGGCTCCGTGG+TGG 0.645532 1.4:+53350953 MS.gene029856:CDS
AATGAGGAGGTCTTTCCAGT+GGG 0.646236 1.4:+53353198 MS.gene029856:CDS
CGGCAAAACAATAACACTAG+AGG 0.651031 1.4:+53350319 MS.gene029856:CDS
TAAGATTTCATCCAATGAGG+AGG 0.657479 1.4:+53353185 MS.gene029856:intron
GAGGAGGTCTTTCCAGTGGG+AGG 0.662215 1.4:+53353201 MS.gene029856:CDS
GTGTAAGATTTCATCCAATG+AGG 0.666050 1.4:+53353182 MS.gene029856:intron
CACCTCGTTCTCCGTCTCCG+CGG 0.667631 1.4:+53350494 MS.gene029856:CDS
CGAAGATTTGCATGCCACCG+CGG 0.668022 1.4:-53350511 None:intergenic
TCTCCGACTTCCACCAACGT+CGG 0.673470 1.4:-53353956 None:intergenic
GCCGGCAAACAACTTGAAGA+CGG 0.681244 1.4:+53350428 MS.gene029856:CDS
TGAAGACGGTAGAACTCTCG+CGG 0.691997 1.4:+53350442 MS.gene029856:CDS
CTAGTTCTGAGGTTACGAGG+TGG 0.692356 1.4:+53350725 MS.gene029856:CDS
TGTAGTTTGTGACGACAATG+TGG 0.719882 1.4:+53353829 MS.gene029856:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAGATAAAAAAAAAACA+TGG + chr1.4:53351891-53351910 MS.gene029856:intron 10.0%
!! AAGACTAAAAATATTATATG+TGG - chr1.4:53351019-53351038 None:intergenic 15.0%
!! AGTAAAACTATAAAATATCT+CGG + chr1.4:53351142-53351161 MS.gene029856:intron 15.0%
!! CTTATTAAATAAAAAGTTGT+TGG + chr1.4:53353117-53353136 MS.gene029856:intron 15.0%
!! TGAATATTTAAATGATTGTT+TGG - chr1.4:53351359-53351378 None:intergenic 15.0%
!!! TCAATGTTTTGAAAAAAATT+GGG - chr1.4:53351979-53351998 None:intergenic 15.0%
!!! TTCAATGTTTTGAAAAAAAT+TGG - chr1.4:53351980-53351999 None:intergenic 15.0%
!!! TTTTAATTTTCTGATTGATA+TGG + chr1.4:53353700-53353719 MS.gene029856:intron 15.0%
!! AATCTTTCAACAAAATCAAA+GGG - chr1.4:53352982-53353001 None:intergenic 20.0%
!! ATATGATATAGATGGAAAAA+AGG - chr1.4:53353762-53353781 None:intergenic 20.0%
!! ATTTACCAATATGATATAGA+TGG - chr1.4:53353770-53353789 None:intergenic 20.0%
!! CATAATCTGTTCATTAAAAA+AGG + chr1.4:53352878-53352897 MS.gene029856:intron 20.0%
!! GATAAAAAAAAAACATGGAA+AGG + chr1.4:53351896-53351915 MS.gene029856:intron 20.0%
!! GTAAAACTATAAAATATCTC+GGG + chr1.4:53351143-53351162 MS.gene029856:intron 20.0%
!! TAACAATTTCTATAGAAAAG+AGG - chr1.4:53353308-53353327 None:intergenic 20.0%
!! TAATCTTTCAACAAAATCAA+AGG - chr1.4:53352983-53353002 None:intergenic 20.0%
!! TCTATATCATATTGGTAAAT+TGG + chr1.4:53353770-53353789 MS.gene029856:intron 20.0%
!! TGAACATCATCATAAAAAAT+CGG - chr1.4:53352937-53352956 None:intergenic 20.0%
!! TGTTACAAAAATATGTACAA+GGG + chr1.4:53353323-53353342 MS.gene029856:intron 20.0%
!! TTGTTACAAAAATATGTACA+AGG + chr1.4:53353322-53353341 MS.gene029856:intron 20.0%
!!! ATTTTCTCAGATTATTATAG+GGG - chr1.4:53352132-53352151 None:intergenic 20.0%
!!! CAATGTTTTGAAAAAAATTG+GGG - chr1.4:53351978-53351997 None:intergenic 20.0%
!!! CTTTTTTAATGAACAGATTA+TGG - chr1.4:53352880-53352899 None:intergenic 20.0%
!!! GAGATATTTTATAGTTTTAC+TGG - chr1.4:53351143-53351162 None:intergenic 20.0%
!!! GATTTTCTCAGATTATTATA+GGG - chr1.4:53352133-53352152 None:intergenic 20.0%
!!! GCTTTTTTTTTTTTTTGACA+AGG - chr1.4:53352077-53352096 None:intergenic 20.0%
!!! TGAATACTTGTTTATTTTCA+AGG + chr1.4:53352727-53352746 MS.gene029856:CDS 20.0%
!!! TGATTTTCTCAGATTATTAT+AGG - chr1.4:53352134-53352153 None:intergenic 20.0%
!!! TTTTATGATGATGTTCATAT+TGG + chr1.4:53352940-53352959 MS.gene029856:intron 20.0%
!!! TTTTCAAAACATTGAAAACT+TGG + chr1.4:53351984-53352003 MS.gene029856:intron 20.0%
!!! TTTTTCCATCTATATCATAT+TGG + chr1.4:53353762-53353781 MS.gene029856:intron 20.0%
! AAAAAAGAATAAATGAGCGA+CGG - chr1.4:53353427-53353446 None:intergenic 25.0%
! AAAAAATTCTAAGTCAAGTG+AGG + chr1.4:53351533-53351552 MS.gene029856:intron 25.0%
! AAAAATTCTAAGTCAAGTGA+GGG + chr1.4:53351534-53351553 MS.gene029856:intron 25.0%
! ACGTTTAATTCACTCAATAA+AGG - chr1.4:53352505-53352524 None:intergenic 25.0%
! AGATTGTAGTTTGATTGTAT+TGG + chr1.4:53352254-53352273 MS.gene029856:intron 25.0%
! AGCAACAACAAATTATAAGA+AGG - chr1.4:53352035-53352054 None:intergenic 25.0%
! CAGTTAAACTTAAATTTGTG+TGG - chr1.4:53353072-53353091 None:intergenic 25.0%
! TAAAAAGTTGTTAGTTCAAG+TGG + chr1.4:53352381-53352400 MS.gene029856:intron 25.0%
! TACATCATATTGTTCTATGT+GGG + chr1.4:53351075-53351094 MS.gene029856:intron 25.0%
! TGAAATAACAAGCATGAAAT+TGG + chr1.4:53353630-53353649 MS.gene029856:intron 25.0%
! TGAAGCTATCAAATATATTG+TGG + chr1.4:53351710-53351729 MS.gene029856:intron 25.0%
! TGAATACTTGTTTATTTCCA+AGG + chr1.4:53352677-53352696 MS.gene029856:intron 25.0%
! TTACTAGTATTATCAAGAGA+GGG + chr1.4:53352578-53352597 MS.gene029856:intron 25.0%
! TTAGGTAGGTATTATATCTA+AGG + chr1.4:53353604-53353623 MS.gene029856:intron 25.0%
! TTGAGTGAATTAAACGTATA+TGG + chr1.4:53352508-53352527 MS.gene029856:intron 25.0%
! TTTGCAGAAATTTATAGATG+TGG + chr1.4:53352415-53352434 MS.gene029856:intron 25.0%
!!! CAAATCAAAATGTGTTGTTT+AGG + chr1.4:53353586-53353605 MS.gene029856:CDS 25.0%
!!! GTTTATTTTCAAGGATTCAT+TGG + chr1.4:53352736-53352755 MS.gene029856:CDS 25.0%
!!! TGAATGCTCTTTTTTTTCTA+AGG + chr1.4:53353473-53353492 MS.gene029856:intron 25.0%
!!! TTTTAGCTTCTGTGTTTTTT+CGG + chr1.4:53351628-53351647 MS.gene029856:intron 25.0%
!!! TTTTTTTTCTAAGGCTTCAT+TGG + chr1.4:53353482-53353501 MS.gene029856:intron 25.0%
!!! TTTTTTTTCTTCCATGTACT+AGG - chr1.4:53351517-53351536 None:intergenic 25.0%
AAAAATCAGACAGATGAGTT+TGG + chr1.4:53352462-53352481 MS.gene029856:intron 30.0%
AAATCAACCATAAAACCTAC+AGG + chr1.4:53351817-53351836 MS.gene029856:intron 30.0%
AACCATAGATGACAAGTTTA+TGG - chr1.4:53351868-53351887 None:intergenic 30.0%
AACGCATTCAATGAAAACAA+AGG - chr1.4:53351752-53351771 None:intergenic 30.0%
AATTCTGCAATTAAGCTTTG+TGG - chr1.4:53351954-53351973 None:intergenic 30.0%
ACACAGAAGCTAAAAACTTA+TGG - chr1.4:53351623-53351642 None:intergenic 30.0%
ACATTTGAATGAAGGGATAT+TGG + chr1.4:53354006-53354025 MS.gene029856:CDS 30.0%
ACCATAGATGACAAGTTTAT+GGG - chr1.4:53351867-53351886 None:intergenic 30.0%
AGTTTAACTGAACTGAAGTT+TGG + chr1.4:53353082-53353101 MS.gene029856:intron 30.0%
ATGAAGATTATGGATAGTTG+GGG + chr1.4:53353887-53353906 MS.gene029856:CDS 30.0%
ATTCATTGGAAATTCTTCGA+TGG + chr1.4:53352750-53352769 MS.gene029856:CDS 30.0%
ATTGGTAAATTGGCAAATGA+AGG + chr1.4:53353780-53353799 MS.gene029856:intron 30.0%
CATGAAGATTATGGATAGTT+GGG + chr1.4:53353886-53353905 MS.gene029856:CDS 30.0%
CATTTGAATGAAGGGATATT+GGG + chr1.4:53354007-53354026 MS.gene029856:CDS 30.0%
CTTACTAGTATTATCAAGAG+AGG + chr1.4:53352577-53352596 MS.gene029856:intron 30.0%
GAATGCGTTTGATGTTAAAT+TGG + chr1.4:53351763-53351782 MS.gene029856:intron 30.0%
GTACATCATATTGTTCTATG+TGG + chr1.4:53351074-53351093 MS.gene029856:intron 30.0%
GTGAATAAGTAAGGAATTCA+GGG - chr1.4:53351214-53351233 None:intergenic 30.0%
GTTCCAATTATTCGTTTCTA+AGG + chr1.4:53353672-53353691 MS.gene029856:intron 30.0%
TCAATGAAAACAAAGGAACT+AGG - chr1.4:53351745-53351764 None:intergenic 30.0%
TCACCTTAGAAACGAATAAT+TGG - chr1.4:53353678-53353697 None:intergenic 30.0%
TCATGAAGATTATGGATAGT+TGG + chr1.4:53353885-53353904 MS.gene029856:CDS 30.0%
TCCTTACTTATTCACCTTAA+GGG + chr1.4:53351219-53351238 MS.gene029856:intron 30.0%
TGACTAAATATTCACCCTTA+AGG - chr1.4:53351236-53351255 None:intergenic 30.0%
TGTATGGACATTTGAATGAA+GGG + chr1.4:53353999-53354018 MS.gene029856:CDS 30.0%
TTCCTTACTTATTCACCTTA+AGG + chr1.4:53351218-53351237 MS.gene029856:intron 30.0%
TTGTAAATTATGCAGCTCAT+GGG - chr1.4:53352169-53352188 None:intergenic 30.0%
TTGTATGGACATTTGAATGA+AGG + chr1.4:53353998-53354017 MS.gene029856:CDS 30.0%
TTTGTAAATTATGCAGCTCA+TGG - chr1.4:53352170-53352189 None:intergenic 30.0%
! ATTTTTGTGAAAACCTTGAC+CGG + chr1.4:53350299-53350318 MS.gene029856:CDS 30.0%
! CAATTAAGCTTTGTGGAAAT+CGG - chr1.4:53351947-53351966 None:intergenic 30.0%
! CTCTCTTGATAATACTAGTA+AGG - chr1.4:53352579-53352598 None:intergenic 30.0%
! TTTTCTTAGGCCATCTTATA+GGG + chr1.4:53353026-53353045 MS.gene029856:intron 30.0%
!! ATATTGTTTCTGTTGCTCAT+TGG + chr1.4:53353158-53353177 MS.gene029856:intron 30.0%
!! TATTGTTTCTGTTGCTCATT+GGG + chr1.4:53353159-53353178 MS.gene029856:intron 30.0%
!! TCAAAATGTGTTGTTTAGGT+AGG + chr1.4:53353590-53353609 MS.gene029856:intron 30.0%
!! TGATACTATTGATAACGTGA+AGG + chr1.4:53350808-53350827 MS.gene029856:CDS 30.0%
!!! ATACTCTAGAGTCTTTTCTT+AGG + chr1.4:53353013-53353032 MS.gene029856:intron 30.0%
!!! TGTTGGCTCAAGTTTTATAT+TGG + chr1.4:53353134-53353153 MS.gene029856:intron 30.0%
!!! TTCCATTTAGCACTTTTTCT+AGG + chr1.4:53352283-53352302 MS.gene029856:intron 30.0%
!!! TTTTGATGATGCTGTTCATT+AGG + chr1.4:53352203-53352222 MS.gene029856:intron 30.0%
AACAGAGATTGATCTTTGCA+GGG + chr1.4:53350639-53350658 MS.gene029856:CDS 35.0%
AACATACACTCCCTATAAGA+TGG - chr1.4:53353039-53353058 None:intergenic 35.0%
AAGATCAATCTCTGTTGATC+CGG - chr1.4:53350635-53350654 None:intergenic 35.0%
AATCTTCGTCAAAACCCTAA+CGG + chr1.4:53350526-53350545 MS.gene029856:CDS 35.0%
ACCCATAAACTTGTCATCTA+TGG + chr1.4:53351863-53351882 MS.gene029856:intron 35.0%
ACCCTTAAGGTGAATAAGTA+AGG - chr1.4:53351223-53351242 None:intergenic 35.0%
ACTAGGACATATCAAAGCAT+GGG - chr1.4:53351500-53351519 None:intergenic 35.0%
AGAACACTTCTTGCAAAATG+TGG + chr1.4:53353554-53353573 MS.gene029856:CDS 35.0%
AGGAACAATGCGATATACAA+GGG + chr1.4:53351176-53351195 MS.gene029856:intron 35.0%
ATATTTGTGAAGACGTTGAC+CGG + chr1.4:53350755-53350774 MS.gene029856:CDS 35.0%
CAAGATATGAATTGATCAGC+AGG + chr1.4:53352821-53352840 MS.gene029856:intron 35.0%
CACAATTCTCATAATTGCTC+CGG + chr1.4:53352616-53352635 MS.gene029856:intron 35.0%
CTTTGATATGTCCTAGTACA+TGG + chr1.4:53351503-53351522 MS.gene029856:intron 35.0%
GAACAGCATCATCAAAATGT+TGG - chr1.4:53352200-53352219 None:intergenic 35.0%
GCTTCTGCTATACATAATGT+TGG + chr1.4:53352782-53352801 MS.gene029856:intron 35.0%
GGGATAATCATATCAAGAGA+CGG + chr1.4:53353343-53353362 MS.gene029856:intron 35.0%
GGTAGGTATTATATCTAAGG+AGG + chr1.4:53353607-53353626 MS.gene029856:intron 35.0%
GGTGAATAAGTAAGGAATTC+AGG - chr1.4:53351215-53351234 None:intergenic 35.0%
GTCAGAAGATTCAACTTCTA+GGG - chr1.4:53350564-53350583 None:intergenic 35.0%
GTGTAAGATTTCATCCAATG+AGG + chr1.4:53353182-53353201 MS.gene029856:intron 35.0%
TAAAATATCTCGGGTGCAAT+TGG + chr1.4:53351152-53351171 MS.gene029856:intron 35.0%
TAAGATTTCATCCAATGAGG+AGG + chr1.4:53353185-53353204 MS.gene029856:intron 35.0%
TACTAGGACATATCAAAGCA+TGG - chr1.4:53351501-53351520 None:intergenic 35.0%
TAGGAACAATGCGATATACA+AGG + chr1.4:53351175-53351194 MS.gene029856:intron 35.0%
TGCTATACATAATGTTGGCA+GGG + chr1.4:53352787-53352806 MS.gene029856:intron 35.0%
TGCTATTCATTGTGAGAATG+CGG + chr1.4:53352542-53352561 MS.gene029856:intron 35.0%
TGGAAATTCTTCGATGGTTT+GGG + chr1.4:53352756-53352775 MS.gene029856:CDS 35.0%
TGTAAATTATGCAGCTCATG+GGG - chr1.4:53352168-53352187 None:intergenic 35.0%
TGTAACTGTGTCTATATGTG+TGG - chr1.4:53353737-53353756 None:intergenic 35.0%
TGTCAGAAGATTCAACTTCT+AGG - chr1.4:53350565-53350584 None:intergenic 35.0%
TTGGAAATTCTTCGATGGTT+TGG + chr1.4:53352755-53352774 MS.gene029856:CDS 35.0%
! CTTTTATTCAGTCCTGCTAA+AGG + chr1.4:53353279-53353298 MS.gene029856:CDS 35.0%
! CTTTTCTTAGGCCATCTTAT+AGG + chr1.4:53353025-53353044 MS.gene029856:intron 35.0%
! TCCTTCTTTGTCTTGGATTT+TGG - chr1.4:53350378-53350397 None:intergenic 35.0%
! TGCATAACCTGTAGGTTTTA+TGG - chr1.4:53351827-53351846 None:intergenic 35.0%
!! AGCAGGATTCTTTTAAAGAC+AGG + chr1.4:53352838-53352857 MS.gene029856:intron 35.0%
!! AGCCTAGAAAAAGTGCTAAA+TGG - chr1.4:53352288-53352307 None:intergenic 35.0%
!! ATTGTTTCTGTTGCTCATTG+GGG + chr1.4:53353160-53353179 MS.gene029856:intron 35.0%
!! CTCTAGTGTTATTGTTTTGC+CGG - chr1.4:53350321-53350340 None:intergenic 35.0%
!! GGTTATTGTTTTTCCCGTTA+GGG - chr1.4:53350543-53350562 None:intergenic 35.0%
AATCAGACAGATGAGTTTGG+AGG + chr1.4:53352465-53352484 MS.gene029856:intron 40.0%
AATGCGATATACAAGGGTTG+GGG + chr1.4:53351182-53351201 MS.gene029856:intron 40.0%
ACAATGCGATATACAAGGGT+TGG + chr1.4:53351180-53351199 MS.gene029856:intron 40.0%
AGAGGTTGGAGATTGATGTT+CGG + chr1.4:53353927-53353946 MS.gene029856:CDS 40.0%
ATCAGACAGATGAGTTTGGA+GGG + chr1.4:53352466-53352485 MS.gene029856:intron 40.0%
ATCTTCGTCAAAACCCTAAC+GGG + chr1.4:53350527-53350546 MS.gene029856:CDS 40.0%
ATTATGGATAGTTGGGGAGA+GGG + chr1.4:53353893-53353912 MS.gene029856:CDS 40.0%
CAACAGAGATTGATCTTTGC+AGG + chr1.4:53350638-53350657 MS.gene029856:CDS 40.0%
CAATGCGATATACAAGGGTT+GGG + chr1.4:53351181-53351200 MS.gene029856:intron 40.0%
CGGCAAAACAATAACACTAG+AGG + chr1.4:53350319-53350338 MS.gene029856:CDS 40.0%
CTAGGACATATCAAAGCATG+GGG - chr1.4:53351499-53351518 None:intergenic 40.0%
CTGCTATACATAATGTTGGC+AGG + chr1.4:53352786-53352805 MS.gene029856:intron 40.0%
CTTCATTGGAAACTCTCAGA+TGG + chr1.4:53353496-53353515 MS.gene029856:intron 40.0%
GCCAAAATCCAAGACAAAGA+AGG + chr1.4:53350374-53350393 MS.gene029856:CDS 40.0%
GCTGTGGTTCATGAAGATTA+TGG + chr1.4:53353877-53353896 MS.gene029856:CDS 40.0%
GCTGTTCATTAGGTCAGTTA+TGG + chr1.4:53352213-53352232 MS.gene029856:intron 40.0%
GGAAACTCTCAGATGGTTTA+GGG + chr1.4:53353503-53353522 MS.gene029856:intron 40.0%
GGGAGATTGTATGTGTTGTA+TGG + chr1.4:53353983-53354002 MS.gene029856:CDS 40.0%
GTGGAATTCCTTCTTTGTCT+TGG - chr1.4:53350385-53350404 None:intergenic 40.0%
GTTATCACTGCATAACCTGT+AGG - chr1.4:53351835-53351854 None:intergenic 40.0%
TAGGCTCTTAGTCTCTTACA+GGG + chr1.4:53352302-53352321 MS.gene029856:intron 40.0%
TATTTGTGAAGACGTTGACC+GGG + chr1.4:53350756-53350775 MS.gene029856:CDS 40.0%
TGGAAACTCTCAGATGGTTT+AGG + chr1.4:53353502-53353521 MS.gene029856:intron 40.0%
TTCTCTGCCAACATTATGCA+TGG - chr1.4:53353538-53353557 None:intergenic 40.0%
! ATGAACCACAGCTTGTTCAT+CGG - chr1.4:53353869-53353888 None:intergenic 40.0%
! GAGATTCTGGTAGAGAGTTT+TGG + chr1.4:53354029-53354048 MS.gene029856:CDS 40.0%
! TGTAGTTTGTGACGACAATG+TGG + chr1.4:53353829-53353848 MS.gene029856:intron 40.0%
!! GGGTTATTGTTTTTCCCGTT+AGG - chr1.4:53350544-53350563 None:intergenic 40.0%
!! TGTTATTGTTTTGCCGGTCA+AGG - chr1.4:53350315-53350334 None:intergenic 40.0%
AAGATCAATCGCTGCTGATC+CGG - chr1.4:53350863-53350882 None:intergenic 45.0%
AATGAGGAGGTCTTTCCAGT+GGG + chr1.4:53353198-53353217 MS.gene029856:CDS 45.0%
AGCAGCGATTGATCTTTGCT+GGG + chr1.4:53350867-53350886 MS.gene029856:CDS 45.0%
ATATCTCGGGTGCAATTGGT+AGG + chr1.4:53351156-53351175 MS.gene029856:intron 45.0%
ATCAATCTCTGTTGATCCGG+TGG - chr1.4:53350632-53350651 None:intergenic 45.0%
ATTATATGTGGCCCACACAG+CGG - chr1.4:53351007-53351026 None:intergenic 45.0%
CCACACAGCGGAAAATTTCT+GGG - chr1.4:53350995-53351014 None:intergenic 45.0%
CTACGCTTCATCTTGTTCTC+AGG + chr1.4:53350942-53350961 MS.gene029856:CDS 45.0%
CTAGGCTCTTAGTCTCTTAC+AGG + chr1.4:53352301-53352320 MS.gene029856:intron 45.0%
GAAAAGAGGAGACCTTTAGC+AGG - chr1.4:53353294-53353313 None:intergenic 45.0%
GAAGGCCAAGATTCAGGATA+AGG + chr1.4:53350826-53350845 MS.gene029856:CDS 45.0%
GAAGGCGAAGATTCAGGATA+AGG + chr1.4:53350598-53350617 MS.gene029856:CDS 45.0%
GAAGGGATATTGGGAGATTC+TGG + chr1.4:53354016-53354035 MS.gene029856:CDS 45.0%
GACATATCAAAGCATGGGGA+AGG - chr1.4:53351495-53351514 None:intergenic 45.0%
GACGTTGTCAATTGTGTCAG+AGG - chr1.4:53350351-53350370 None:intergenic 45.0%
GATGAAGCGTACTCTCTTTC+TGG - chr1.4:53350706-53350725 None:intergenic 45.0%
GATTATGGATAGTTGGGGAG+AGG + chr1.4:53353892-53353911 MS.gene029856:CDS 45.0%
GCCAAGATTCAGGATAAGGA+GGG + chr1.4:53350830-53350849 MS.gene029856:CDS 45.0%
GCGAAGATTCAGGATAAGGA+GGG + chr1.4:53350602-53350621 MS.gene029856:CDS 45.0%
GCTTCAGCCATGCATAATGT+TGG + chr1.4:53353528-53353547 MS.gene029856:CDS 45.0%
TAACGTGAAGGCCAAGATTC+AGG + chr1.4:53350820-53350839 MS.gene029856:CDS 45.0%
TATTCGCAACAGACTCATCC+TGG - chr1.4:53352650-53352669 None:intergenic 45.0%
TCCCTCCTTATCCTGAATCT+TGG - chr1.4:53350606-53350625 None:intergenic 45.0%
TGACACAATCGACAACGTGA+AGG + chr1.4:53350580-53350599 MS.gene029856:CDS 45.0%
! CCAGAAATTTTCCGCTGTGT+GGG + chr1.4:53350993-53351012 MS.gene029856:intron 45.0%
! GAAGACGATTACTCTAGAGG+TGG + chr1.4:53350778-53350797 MS.gene029856:CDS 45.0%
!! ACCGTCTTCAAGTTGTTTGC+CGG - chr1.4:53350432-53350451 None:intergenic 45.0%
!! CATCTAGTTCTGAGGTTACG+AGG + chr1.4:53350722-53350741 MS.gene029856:CDS 45.0%
!! CTCTAGAGTAATCGTCTTCC+CGG - chr1.4:53350777-53350796 None:intergenic 45.0%
!! GTACGCTTCATCTAGTTCTG+AGG + chr1.4:53350714-53350733 MS.gene029856:CDS 45.0%
!! TAGTTCTGAGGTTACGAGGT+GGG + chr1.4:53350726-53350745 MS.gene029856:CDS 45.0%
!!! ATTTATTCTTTTTTTTTTTT+AGG + chr1.4:53353433-53353452 MS.gene029856:intron 5.0%
!!! TTTATTCTTTTTTTTTTTTA+GGG + chr1.4:53353434-53353453 MS.gene029856:intron 5.0%
AAGATGAGACGCTGTTGGTC+AGG - chr1.4:53350407-53350426 None:intergenic 50.0%
ATCTAAACATCGCCACCACC+AGG - chr1.4:53351594-53351613 None:intergenic 50.0%
CAACGTGAAGGCGAAGATTC+AGG + chr1.4:53350592-53350611 MS.gene029856:CDS 50.0%
CAATGAGGAGGTCTTTCCAG+TGG + chr1.4:53353197-53353216 MS.gene029856:CDS 50.0%
CACTGGAAAGACCTCCTCAT+TGG - chr1.4:53353199-53353218 None:intergenic 50.0%
CAGATGAGTTCAGACACGTC+AGG + chr1.4:53353256-53353275 MS.gene029856:CDS 50.0%
CAGCAGCGATTGATCTTTGC+TGG + chr1.4:53350866-53350885 MS.gene029856:CDS 50.0%
CCCACACAGCGGAAAATTTC+TGG - chr1.4:53350996-53351015 None:intergenic 50.0%
CGGCATCTTTGCATCAGTGT+TGG - chr1.4:53351927-53351946 None:intergenic 50.0%
CGGGAAGACGATTACTCTAG+AGG + chr1.4:53350775-53350794 MS.gene029856:CDS 50.0%
CTTTGCTGGGAAACAGCTTG+AGG + chr1.4:53350880-53350899 MS.gene029856:CDS 50.0%
GATCTTTGCAGGGAAGCAGT+TGG + chr1.4:53350649-53350668 MS.gene029856:CDS 50.0%
GCCGGCAAACAACTTGAAGA+CGG + chr1.4:53350428-53350447 MS.gene029856:CDS 50.0%
GGAAACAGCTTGAGGATGGA+AGG + chr1.4:53350888-53350907 MS.gene029856:CDS 50.0%
GGATAAGGAGGGAATTCCAC+CGG + chr1.4:53350613-53350632 MS.gene029856:CDS 50.0%
GGCCAAGATTCAGGATAAGG+AGG + chr1.4:53350829-53350848 MS.gene029856:CDS 50.0%
GGCGAAGATTCAGGATAAGG+AGG + chr1.4:53350601-53350620 MS.gene029856:CDS 50.0%
GGTTGGAGATTGATGTTCGG+AGG + chr1.4:53353930-53353949 MS.gene029856:CDS 50.0%
TCGCAACAGACTCGAATCCT+TGG - chr1.4:53352697-53352716 None:intergenic 50.0%
TCTAAACATCGCCACCACCA+GGG - chr1.4:53351593-53351612 None:intergenic 50.0%
TCTAAGTCAAGTGAGGGCCT+AGG + chr1.4:53351540-53351559 MS.gene029856:intron 50.0%
TGAAGACGGTAGAACTCTCG+CGG + chr1.4:53350442-53350461 MS.gene029856:CDS 50.0%
TGGTGGAAGTCGGAGAGAAA+GGG + chr1.4:53353963-53353982 MS.gene029856:CDS 50.0%
TTATGCAGCTCATGGGGAAG+AGG - chr1.4:53352162-53352181 None:intergenic 50.0%
TTGGTGGAAGTCGGAGAGAA+AGG + chr1.4:53353962-53353981 MS.gene029856:CDS 50.0%
TTGTGACGACAATGTGGCAG+TGG + chr1.4:53353835-53353854 MS.gene029856:CDS 50.0%
! AAAATTTCTGGGTCCGTCCC+TGG - chr1.4:53350984-53351003 None:intergenic 50.0%
! AAATTTCTGGGTCCGTCCCT+GGG - chr1.4:53350983-53351002 None:intergenic 50.0%
! CCCAGAAATTTTCCGCTGTG+TGG + chr1.4:53350992-53351011 MS.gene029856:intron 50.0%
! TTTCCGACGTTGGTGGAAGT+CGG + chr1.4:53353953-53353972 MS.gene029856:CDS 50.0%
!! CTAGTTCTGAGGTTACGAGG+TGG + chr1.4:53350725-53350744 MS.gene029856:CDS 50.0%
ACTCATCCTGGCAGTTGCAC+CGG - chr1.4:53352638-53352657 None:intergenic 55.0%
ATCAATCGCTGCTGATCCGG+TGG - chr1.4:53350860-53350879 None:intergenic 55.0%
ATGAGACGCTGTTGGTCAGG+TGG - chr1.4:53350404-53350423 None:intergenic 55.0%
CAACAGCGTCTCATCTTCGC+CGG + chr1.4:53350410-53350429 MS.gene029856:CDS 55.0%
CAGATGAGTTTGGAGGGCAG+AGG + chr1.4:53352472-53352491 MS.gene029856:intron 55.0%
CATCTTGTTCTCAGGCTCCG+TGG + chr1.4:53350950-53350969 MS.gene029856:CDS 55.0%
CGAAGATTTGCATGCCACCG+CGG - chr1.4:53350514-53350533 None:intergenic 55.0%
GAAACTGCTCTTCCTCCCAC+TGG - chr1.4:53353216-53353235 None:intergenic 55.0%
GAGAGGGAGTGGTGTTTGAG+AGG + chr1.4:53353909-53353928 MS.gene029856:CDS 55.0%
GCAGGGAAGCAGTTGGAAGA+TGG + chr1.4:53350656-53350675 MS.gene029856:CDS 55.0%
GCTGGGAAACAGCTTGAGGA+TGG + chr1.4:53350884-53350903 MS.gene029856:CDS 55.0%
GGGAGTGGTGTTTGAGAGGT+TGG + chr1.4:53353913-53353932 MS.gene029856:CDS 55.0%
GGTGAAGCGTGGACTCTTTC+TGG - chr1.4:53350478-53350497 None:intergenic 55.0%
TCTCCGACTTCCACCAACGT+CGG - chr1.4:53353959-53353978 None:intergenic 55.0%
TGTCGCCGATGAACAAGCTG+TGG + chr1.4:53353861-53353880 MS.gene029856:CDS 55.0%
TGTTCGGAGGTTTCCGACGT+TGG + chr1.4:53353943-53353962 MS.gene029856:CDS 55.0%
AACATCGCCACCACCAGGGA+CGG - chr1.4:53351589-53351608 None:intergenic 60.0%
ACGGAGAACGAGGTGAAGCG+TGG - chr1.4:53350489-53350508 None:intergenic 60.0%
ATTGCTCCGGTGCAACTGCC+AGG + chr1.4:53352629-53352648 MS.gene029856:intron 60.0%
CGGCGAAGATGAGACGCTGT+TGG - chr1.4:53350412-53350431 None:intergenic 60.0%
CTTGTTCTCAGGCTCCGTGG+TGG + chr1.4:53350953-53350972 MS.gene029856:CDS 60.0%
GAGGAGGTCTTTCCAGTGGG+AGG + chr1.4:53353201-53353220 MS.gene029856:CDS 60.0%
GGATAGTTGGGGAGAGGGAG+TGG + chr1.4:53353898-53353917 MS.gene029856:CDS 60.0%
TCGGAGGTTTCCGACGTTGG+TGG + chr1.4:53353946-53353965 MS.gene029856:CDS 60.0%
TTCTCAGGCTCCGTGGTGGT+GGG + chr1.4:53350957-53350976 MS.gene029856:intron 60.0%
TTTGCATGCCACCGCGGAGA+CGG - chr1.4:53350508-53350527 None:intergenic 60.0%
! ACCCACGTTGGTGGGTGTGT+GGG - chr1.4:53351566-53351585 None:intergenic 60.0%
AGGGACGGACCCACGTTGGT+GGG - chr1.4:53351574-53351593 None:intergenic 65.0%
CACCTCGTTCTCCGTCTCCG+CGG + chr1.4:53350494-53350513 MS.gene029856:CDS 65.0%
GCCCACACACCCACCAACGT+GGG + chr1.4:53351562-53351581 MS.gene029856:intron 65.0%
GTTCTCAGGCTCCGTGGTGG+TGG + chr1.4:53350956-53350975 MS.gene029856:intron 65.0%
! GACCCACGTTGGTGGGTGTG+TGG - chr1.4:53351567-53351586 None:intergenic 65.0%
! GTTGGTGGGTGTGTGGGCCT+AGG - chr1.4:53351560-53351579 None:intergenic 65.0%
CAACGTGGGTCCGTCCCTGG+TGG + chr1.4:53351576-53351595 MS.gene029856:intron 70.0%
CACCAACGTGGGTCCGTCCC+TGG + chr1.4:53351573-53351592 MS.gene029856:intron 70.0%
CACCAGGGACGGACCCACGT+TGG - chr1.4:53351578-53351597 None:intergenic 70.0%
CACCGCGGAGACGGAGAACG+AGG - chr1.4:53350499-53350518 None:intergenic 70.0%
CAGGGACGGACCCACGTTGG+TGG - chr1.4:53351575-53351594 None:intergenic 70.0%
CTCGTTCTCCGTCTCCGCGG+TGG + chr1.4:53350497-53350516 MS.gene029856:CDS 70.0%
GGCCCACACACCCACCAACG+TGG + chr1.4:53351561-53351580 MS.gene029856:intron 70.0%
CGTCCCTGGGCCCACCACCA+CGG - chr1.4:53350970-53350989 None:intergenic 75.0%
CGTGGGTCCGTCCCTGGTGG+TGG + chr1.4:53351579-53351598 MS.gene029856:intron 75.0%
!! CGTGGTGGTGGGCCCAGGGA+CGG + chr1.4:53350968-53350987 MS.gene029856:intron 75.0%
!! GCTCCGTGGTGGTGGGCCCA+GGG + chr1.4:53350964-53350983 MS.gene029856:intron 75.0%
!!! GGCTCCGTGGTGGTGGGCCC+AGG + chr1.4:53350963-53350982 MS.gene029856:intron 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 53350293 53354060 53350293 ID=MS.gene029856
chr1.4 mRNA 53350293 53354060 53350293 ID=MS.gene029856.t1;Parent=MS.gene029856
chr1.4 exon 53350293 53350974 53350293 ID=MS.gene029856.t1.exon1;Parent=MS.gene029856.t1
chr1.4 CDS 53350293 53350974 53350293 ID=cds.MS.gene029856.t1;Parent=MS.gene029856.t1
chr1.4 exon 53352699 53352799 53352699 ID=MS.gene029856.t1.exon2;Parent=MS.gene029856.t1
chr1.4 CDS 53352699 53352799 53352699 ID=cds.MS.gene029856.t1;Parent=MS.gene029856.t1
chr1.4 exon 53353189 53353300 53353189 ID=MS.gene029856.t1.exon3;Parent=MS.gene029856.t1
chr1.4 CDS 53353189 53353300 53353189 ID=cds.MS.gene029856.t1;Parent=MS.gene029856.t1
chr1.4 exon 53353515 53353607 53353515 ID=MS.gene029856.t1.exon4;Parent=MS.gene029856.t1
chr1.4 CDS 53353515 53353607 53353515 ID=cds.MS.gene029856.t1;Parent=MS.gene029856.t1
chr1.4 exon 53353834 53354060 53353834 ID=MS.gene029856.t1.exon5;Parent=MS.gene029856.t1
chr1.4 CDS 53353834 53354060 53353834 ID=cds.MS.gene029856.t1;Parent=MS.gene029856.t1
Gene Sequence

>MS.gene029856

ATGCAGATTTTTGTGAAAACCTTGACCGGCAAAACAATAACACTAGAGGTAGAATCCTCTGACACAATTGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCTGACCAACAGCGTCTCATCTTCGCCGGCAAACAACTTGAAGACGGTAGAACTCTCGCGGATTACAATATCCAGAAAGAGTCCACGCTTCACCTCGTTCTCCGTCTCCGCGGTGGCATGCAAATCTTCGTCAAAACCCTAACGGGAAAAACAATAACCCTAGAAGTTGAATCTTCTGACACAATCGACAACGTGAAGGCGAAGATTCAGGATAAGGAGGGAATTCCACCGGATCAACAGAGATTGATCTTTGCAGGGAAGCAGTTGGAAGATGGTAGAACTCTTGCAGATTATAATATCCAGAAAGAGAGTACGCTTCATCTAGTTCTGAGGTTACGAGGTGGGATGCAGATATTTGTGAAGACGTTGACCGGGAAGACGATTACTCTAGAGGTGGAGAGTTCTGATACTATTGATAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCACCGGATCAGCAGCGATTGATCTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCTTGCTGATTATAATATTCAGAAAGAGTCTACGCTTCATCTTGTTCTCAGGCTCCGTGGTGGTGGGCCCAGGGACGGACCCAGAAATTTTCCGCTGTGTGGGCCACATATAATATTTTTAGTCTTTAAAGCATGAGTGTATGCTTGTATTTTTAAGAAATGTACATCATATTGTTCTATGTGGGTTTTCATGTCATAATTTTTGAATGATTTTCTCACTTTCAATGCCAGTAAAACTATAAAATATCTCGGGTGCAATTGGTAGGAACAATGCGATATACAAGGGTTGGGGTTTGAACCCTGAATTCCTTACTTATTCACCTTAAGGGTGAATATTTAGTCATTAGACTACTTGATTAAAAATAAAAACTATTAAGAGTTTTTTTGAAAGAACTATAAAAGATTTTTTGTTAATATAAAAGCATCTATTTCAATATAAGTAACCAAACAATCATTTAAATATTCATCTTTCATACAATTTCACAATTGATTTTTGATAATATTTGTATAACTAGCAAGAAATGTAGACTTTTGATGTAATAAAAATAATAGTGAATTGTTTTTATTGACAAATTTTATCCTTCCCCATGCTTTGATATGTCCTAGTACATGGAAGAAAAAAAAAATTCTAAGTCAAGTGAGGGCCTAGGCCCACACACCCACCAACGTGGGTCCGTCCCTGGTGGTGGCGATGTTTAGATTTAGATCCATAAGTTTTTAGCTTCTGTGTTTTTTCGGTTATGTTCTGCTGCAATGATTAAAAGTTTAATAAAAGTTTCAATTTGATAATGAAATTGTGAAGCTATCAAATATATTGTGGATGTTTATGCCTAGTTCCTTTGTTTTCATTGAATGCGTTTGATGTTAAATTGGCTGATGTATTTCTGTTAAAAAATTTCATTGCAAATCAACCATAAAACCTACAGGTTATGCAGTGATAACATGAGAAAACCCATAAACTTGTCATCTATGGTTCTCTTTAAGATAAAAAAAAAACATGGAAAGGTGTGACCAACACTGATGCAAAGATGCCGATTTCCACAAAGCTTAATTGCAGAATTTCCCCAATTTTTTTCAAAACATTGAAAACTTGGTGCTACAATGATTTCTTACATGTATCCTTCTTATAATTTGTTGTTGCTTGATAGCTTGCTGTTATAGCCTTGTCAAAAAAAAAAAAAAGCTTGCTGTTATAGCTAACATGTTATCAAGCACACCCCTATAATAATCTGAGAAAATCAAATCTCCTCTTCCCCATGAGCTGCATAATTTACAAATGTAACACCAACATTTTGATGATGCTGTTCATTAGGTCAGTTATGGAGTTTCACTTTTGTCGAAAGATTGTAGTTTGATTGTATTGGATGTCTTTCCATTTAGCACTTTTTCTAGGCTCTTAGTCTCTTACAGGGTTTGCATATTTCTGCTGTATATGAACTTGTCATTCTAATTTCTTTGTACTGTAGTTTAAAAAGTTGTTAGTTCAAGTGGAAAGAAGAGCTTTTGCAGAAATTTATAGATGTGGTGATGAATATAAATTAATGTAAATAAAAATCAGACAGATGAGTTTGGAGGGCAGAGGTGTCGTGCCTTTATTGAGTGAATTAAACGTATATGGTTCTCATAAAGTGCTATTCATTGTGAGAATGCGGTCACATAAAATCCTTACTAGTATTATCAAGAGAGGGATTAATAGTCACACTCACAATTCTCATAATTGCTCCGGTGCAACTGCCAGGATGAGTCTGTTGCGAATATGTTCATTGAATACTTGTTTATTTCCAAGGATTCGAGTCTGTTGCGAATATGTTCTTTGAATACTTGTTTATTTTCAAGGATTCATTGGAAATTCTTCGATGGTTTGGGATTGCTTCTGCTATACATAATGTTGGCAGGGAACAGTTCTTGCAAGATATGAATTGATCAGCAGGATTCTTTTAAAGACAGGTTTTAGTAGAATGTTTCCATAATCTGTTCATTAAAAAAGGCATAAGTCTGCTGCACATTCTACAAGTGTAATGCCGATTTTTTATGATGATGTTCATATTGGTCAATCAAGTGAGTTTCCCTTTGATTTTGTTGAAAGATTATAGTTTGATTATACTCTAGAGTCTTTTCTTAGGCCATCTTATAGGGAGTGTATGTTTCTGATGTCTCCACACAAATTTAAGTTTAACTGAACTGAAGTTTGGTTCTTTGTTTTGCTTATTAAATAAAAAGTTGTTGGCTCAAGTTTTATATTGGCATATTGTTTCTGTTGCTCATTGGGGTGTAAGATTTCATCCAATGAGGAGGTCTTTCCAGTGGGAGGAAGAGCAGTTTCAGAATCGTATACATGTCGTGCAGATGAGTTCAGACACGTCAGGCTTTTATTCAGTCCTGCTAAAGGTCTCCTCTTTTCTATAGAAATTGTTACAAAAATATGTACAAGGGATAATCATATCAAGAGACGGATTATTAGTCACGACTTGCAATTCTCGTCTTTGAACTGAAGAAACTGCGAGTTTAAGTCCGTCGCTCATTTATTCTTTTTTTTTTTTAGGGAAGCTTATTTACTCTTTGAATGCTCTTTTTTTTCTAAGGCTTCATTGGAAACTCTCAGATGGTTTAGGGTTGCTTCAGCCATGCATAATGTTGGCAGAGAACACTTCTTGCAAAATGTGGTGTTCTAATCAAATCAAAATGTGTTGTTTAGGTAGGTATTATATCTAAGGAGGTGAAATAACAAGCATGAAATTGGACAAATGCAAAGTTTAAGAGTTCCAATTATTCGTTTCTAAGGTGATTTTTTAATTTTCTGATTGATATGGTAGTCATTTTTCCACACATATAGACACAGTTACATACCTTTTTTCCATCTATATCATATTGGTAAATTGGCAAATGAAGGATCTTTAGTTTGATCTTGTTGAAAATTGTAGTTTGTGACGACAATGTGGCAGTGGCTCTGTCGCCGATGAACAAGCTGTGGTTCATGAAGATTATGGATAGTTGGGGAGAGGGAGTGGTGTTTGAGAGGTTGGAGATTGATGTTCGGAGGTTTCCGACGTTGGTGGAAGTCGGAGAGAAAGGGAGATTGTATGTGTTGTATGGACATTTGAATGAAGGGATATTGGGAGATTCTGGTAGAGAGTTTTGGTGTTTCTGA
Protein sequence

>MS.gene029856.t1

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGFESVANMFFEYLFIFKDSLEILRWFGIASAIHNISSNEEVFPVGGRAVSESYTCRADEFRHVRLLFSPAKDGLGLLQPCIMLAENTSCKMWCSNQIKMCCLVCDDNVAVALSPMNKLWFMKIMDSWGEGVVFERLEIDVRRFPTLVEVGEKGRLYVLYGHLNEGILGDSGREFWCF