Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012014.t1 | XP_013446388.1 | 94.9 | 176 | 9 | 0 | 1 | 176 | 62 | 237 | 1.20E-83 | 319.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012014.t1 | F4J220 | 53.5 | 170 | 77 | 2 | 6 | 173 | 60 | 229 | 4.5e-39 | 162.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012014.t1 | A0A072U3M9 | 94.9 | 176 | 9 | 0 | 1 | 176 | 62 | 237 | 8.7e-84 | 319.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87473 | MS.gene012014 | PPI |
| MS.gene012014 | MS.gene87473 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012014.t1 | MTR_8g077115 | 91.848 | 184 | 15 | 0 | 1 | 184 | 62 | 245 | 9.34e-109 | 313 |
| MS.gene012014.t1 | MTR_8g077120 | 77.174 | 184 | 40 | 1 | 1 | 184 | 56 | 237 | 3.77e-97 | 282 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene012014.t1 | AT5G66450 | 53.886 | 193 | 78 | 5 | 1 | 187 | 60 | 247 | 9.54e-59 | 184 |
| MS.gene012014.t1 | AT5G66450 | 55.191 | 183 | 74 | 4 | 1 | 177 | 60 | 240 | 1.35e-57 | 183 |
| MS.gene012014.t1 | AT5G66450 | 54.945 | 182 | 74 | 4 | 1 | 176 | 1 | 180 | 2.87e-57 | 180 |
| MS.gene012014.t1 | AT5G66450 | 54.945 | 182 | 74 | 4 | 1 | 176 | 60 | 239 | 2.32e-56 | 179 |
| MS.gene012014.t1 | AT5G66450 | 54.945 | 182 | 74 | 4 | 1 | 176 | 60 | 239 | 2.32e-56 | 179 |
| MS.gene012014.t1 | AT3G50920 | 52.151 | 186 | 82 | 3 | 6 | 184 | 9 | 194 | 1.17e-55 | 176 |
| MS.gene012014.t1 | AT3G50920 | 52.151 | 186 | 82 | 3 | 6 | 184 | 60 | 245 | 1.03e-54 | 175 |
Find 38 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTGTTTGGCTTTGGCATT+TGG | 0.288675 | 8.2:-28292340 | MS.gene012014:CDS |
| ACTCAAACAAATACTTAATC+AGG | 0.308287 | 8.2:-28293359 | MS.gene012014:CDS |
| TACCAGCAGTTGTTTGGCTT+TGG | 0.320403 | 8.2:-28292347 | MS.gene012014:CDS |
| GCAGAAGCCTTATGGTTTGC+AGG | 0.334010 | 8.2:-28293415 | MS.gene012014:CDS |
| CACCATTACCAGCAGTTGTT+TGG | 0.352388 | 8.2:-28292353 | MS.gene012014:CDS |
| TTCTCAATCCATCTTCTTTG+CGG | 0.362994 | 8.2:-28293290 | MS.gene012014:CDS |
| GGGTCTGCAGTACTTTGCTT+AGG | 0.387991 | 8.2:-28291452 | MS.gene012014:intron |
| AACAAGAAGCTTTCGTTGAT+AGG | 0.397043 | 8.2:-28294740 | MS.gene012014:CDS |
| GGCATGATGCAGAAGCCTTA+TGG | 0.399429 | 8.2:-28293423 | MS.gene012014:CDS |
| GGGTCAGATTTCACGGTTGA+AGG | 0.425182 | 8.2:+28293331 | None:intergenic |
| GTGGTTGTTGGAGCTGTTGT+GGG | 0.427981 | 8.2:-28291569 | MS.gene012014:CDS |
| AGTGGTTGTTGGAGCTGTTG+TGG | 0.446450 | 8.2:-28291570 | MS.gene012014:CDS |
| GAATGTGAAGACGGCATCCC+GGG | 0.449361 | 8.2:+28293310 | None:intergenic |
| CATCCCGGGGTCAGATTTCA+CGG | 0.457136 | 8.2:+28293324 | None:intergenic |
| TGGATAGTAAGTGCCCTCTT+TGG | 0.458814 | 8.2:-28293463 | MS.gene012014:CDS |
| AAACATGACCGCAAAGAAGA+TGG | 0.468037 | 8.2:+28293282 | None:intergenic |
| AGCCAAACAACTGCTGGTAA+TGG | 0.486744 | 8.2:+28292351 | None:intergenic |
| ACAGTGAGCCAAGTGGTTGT+TGG | 0.497938 | 8.2:-28291581 | MS.gene012014:CDS |
| TGCCAAAGCCAAACAACTGC+TGG | 0.514847 | 8.2:+28292345 | None:intergenic |
| TAAGAGTTGATTCCACGTCC+TGG | 0.534079 | 8.2:+28294688 | None:intergenic |
| AGAATGTGAAGACGGCATCC+CGG | 0.538219 | 8.2:+28293309 | None:intergenic |
| GTAAGAACTGCTCAGAGAGA+TGG | 0.542961 | 8.2:-28294792 | MS.gene012014:CDS |
| CAGAAGCCTTATGGTTTGCA+GGG | 0.543056 | 8.2:-28293414 | MS.gene012014:CDS |
| CAACAGCTCCAACAACCACT+TGG | 0.543736 | 8.2:+28291573 | None:intergenic |
| GGTCAACTTTCTCTATCTTG+TGG | 0.546263 | 8.2:-28291547 | MS.gene012014:intron |
| GAAGCCTTATGGTTTGCAGG+GGG | 0.547181 | 8.2:-28293412 | MS.gene012014:CDS |
| GCTGTTGTTTACAGAGCAAG+TGG | 0.563321 | 8.2:-28293483 | MS.gene012014:intron |
| CAGAGAGATGGAAAGAGTGA+TGG | 0.564058 | 8.2:-28294780 | MS.gene012014:CDS |
| GGAATCAACTCTTAATCGAC+TGG | 0.570438 | 8.2:-28294679 | MS.gene012014:intron |
| CAACCGTGAAATCTGACCCC+GGG | 0.580117 | 8.2:-28293327 | MS.gene012014:CDS |
| AAGCCTTATGGTTTGCAGGG+GGG | 0.591130 | 8.2:-28293411 | MS.gene012014:CDS |
| ATGGATTGAGAATGTGAAGA+CGG | 0.609166 | 8.2:+28293301 | None:intergenic |
| TGGGTGAAAAGTGCGATGGA+TGG | 0.619297 | 8.2:-28294819 | None:intergenic |
| AGAAGCCTTATGGTTTGCAG+GGG | 0.644085 | 8.2:-28293413 | MS.gene012014:CDS |
| TCAACCGTGAAATCTGACCC+CGG | 0.644259 | 8.2:-28293328 | MS.gene012014:CDS |
| TGGTTGTTGGAGCTGTTGTG+GGG | 0.650107 | 8.2:-28291568 | MS.gene012014:CDS |
| AATGTGAAGACGGCATCCCG+GGG | 0.687489 | 8.2:+28293311 | None:intergenic |
| ACTTCATACAGTGAGCCAAG+TGG | 0.707082 | 8.2:-28291588 | MS.gene012014:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTAGTATATTTTTT+TGG | + | chr8.2:28294466-28294485 | None:intergenic | 10.0% |
| !!! | TATATTTTTATATGTTTCTT+TGG | - | chr8.2:28293808-28293827 | MS.gene012014:intron | 10.0% |
| !! | AAATATGAAGATTGAAAAAA+AGG | + | chr8.2:28292008-28292027 | None:intergenic | 15.0% |
| !! | AGGTAAAAATAACAAATTTA+TGG | + | chr8.2:28292503-28292522 | None:intergenic | 15.0% |
| !! | ATATAATTATTGCAAAAGAA+AGG | - | chr8.2:28291775-28291794 | MS.gene012014:intron | 15.0% |
| !! | ATTATATTAAGTGAACATTA+AGG | - | chr8.2:28292689-28292708 | MS.gene012014:intron | 15.0% |
| !! | CATTTCCTTATAAAAAATAA+CGG | + | chr8.2:28292474-28292493 | None:intergenic | 15.0% |
| !! | TTAATATTGTGTAATTGTAA+AGG | - | chr8.2:28292566-28292585 | MS.gene012014:intron | 15.0% |
| !!! | ATTATGTATTCTTTAGAAAA+TGG | - | chr8.2:28293074-28293093 | MS.gene012014:intron | 15.0% |
| !! | AGTATATAATGTTAGTAGTT+AGG | + | chr8.2:28294358-28294377 | None:intergenic | 20.0% |
| !! | ATCATTTGAATGGAAATAAA+AGG | + | chr8.2:28292993-28293012 | None:intergenic | 20.0% |
| !! | ATGCAATTCTATTGTATTTA+TGG | + | chr8.2:28293785-28293804 | None:intergenic | 20.0% |
| !! | CCATATAGGATTTAATATAT+AGG | + | chr8.2:28293294-28293313 | None:intergenic | 20.0% |
| !! | CCTATATATTAAATCCTATA+TGG | - | chr8.2:28293291-28293310 | MS.gene012014:CDS | 20.0% |
| !! | GATATACTAGTAAACTAAAT+TGG | + | chr8.2:28293936-28293955 | None:intergenic | 20.0% |
| !! | GTTCACTTAATATAATACAA+TGG | + | chr8.2:28292685-28292704 | None:intergenic | 20.0% |
| !! | TCAAAAAATTTAGCATCATT+TGG | - | chr8.2:28292159-28292178 | MS.gene012014:intron | 20.0% |
| !! | TGCAATAATTATATCATCAA+CGG | + | chr8.2:28291769-28291788 | None:intergenic | 20.0% |
| !! | TGTCAAAAAATTAATTGATG+TGG | - | chr8.2:28293334-28293353 | MS.gene012014:CDS | 20.0% |
| !!! | ATTTATCTTTTTCTATTGTG+TGG | - | chr8.2:28291644-28291663 | MS.gene012014:intron | 20.0% |
| !!! | ATTTTATTGAAGAAATAGAC+TGG | - | chr8.2:28291697-28291716 | MS.gene012014:intron | 20.0% |
| !!! | GACAAAAAGATTTTAAAACT+TGG | - | chr8.2:28291799-28291818 | MS.gene012014:intron | 20.0% |
| !!! | TATCACCGTTATTTTTTATA+AGG | - | chr8.2:28292466-28292485 | MS.gene012014:intron | 20.0% |
| !!! | TGCAATTTCAGTTTTAATAT+GGG | + | chr8.2:28292629-28292648 | None:intergenic | 20.0% |
| !!! | TTAGTATATTTTTTTGGTAG+TGG | + | chr8.2:28294460-28294479 | None:intergenic | 20.0% |
| !!! | TTGCAATTTCAGTTTTAATA+TGG | + | chr8.2:28292630-28292649 | None:intergenic | 20.0% |
| ! | AAACCAAGTTTAGATTCTTA+AGG | - | chr8.2:28292389-28292408 | MS.gene012014:intron | 25.0% |
| ! | AAATAACAAAAACACCAAAG+AGG | + | chr8.2:28292777-28292796 | None:intergenic | 25.0% |
| ! | AACATATTATGTGCACTAAA+TGG | + | chr8.2:28294552-28294571 | None:intergenic | 25.0% |
| ! | AATAACAAAAACACCAAAGA+GGG | + | chr8.2:28292776-28292795 | None:intergenic | 25.0% |
| ! | ACATAAATTTGATCTCATAC+AGG | - | chr8.2:28294083-28294102 | MS.gene012014:intron | 25.0% |
| ! | ACATCAATTCTTAACCATAT+AGG | + | chr8.2:28293308-28293327 | None:intergenic | 25.0% |
| ! | ACTCAAACAAATACTTAATC+AGG | - | chr8.2:28292864-28292883 | MS.gene012014:intron | 25.0% |
| ! | ATCCATTCTTAATAGCTTAA+GGG | - | chr8.2:28291840-28291859 | MS.gene012014:intron | 25.0% |
| ! | ATGAGCAGAAAAAACAATAT+AGG | + | chr8.2:28291626-28291645 | None:intergenic | 25.0% |
| ! | ATTCTTCTAGATGAATATTC+TGG | + | chr8.2:28293671-28293690 | None:intergenic | 25.0% |
| ! | ATTTGAATGGAAATAAAAGG+TGG | + | chr8.2:28292990-28293009 | None:intergenic | 25.0% |
| ! | CATAAATTTGATCTCATACA+GGG | - | chr8.2:28294084-28294103 | MS.gene012014:intron | 25.0% |
| ! | TATATGGTTAAGAATTGATG+TGG | - | chr8.2:28293307-28293326 | MS.gene012014:CDS | 25.0% |
| ! | TATCCATTCTTAATAGCTTA+AGG | - | chr8.2:28291839-28291858 | MS.gene012014:intron | 25.0% |
| ! | TTAGATTTGTATGATAGGAT+AGG | + | chr8.2:28291952-28291971 | None:intergenic | 25.0% |
| ! | TTGAAACAAAACAGAGATAA+TGG | + | chr8.2:28293624-28293643 | None:intergenic | 25.0% |
| ! | TTGACAGTCAAATATCTATT+TGG | + | chr8.2:28293579-28293598 | None:intergenic | 25.0% |
| ! | TTGTCAAAAGAAAAACCATT+TGG | - | chr8.2:28292359-28292378 | MS.gene012014:CDS | 25.0% |
| ! | TTTGAATGGAAATAAAAGGT+GGG | + | chr8.2:28292989-28293008 | None:intergenic | 25.0% |
| !!! | TATTTCAAGTTGTGAAGAAA+AGG | + | chr8.2:28292523-28292542 | None:intergenic | 25.0% |
| !!! | TCTTTGGTGTTTTTGTTATT+TGG | - | chr8.2:28292776-28292795 | MS.gene012014:intron | 25.0% |
| !!! | TGGTTTTAGATTTGTATGAT+AGG | + | chr8.2:28291957-28291976 | None:intergenic | 25.0% |
| AAACTAACATTCGCTTAGTA+TGG | - | chr8.2:28294481-28294500 | MS.gene012014:intron | 30.0% | |
| AAGTGAACATTAAGGTATGA+GGG | - | chr8.2:28292697-28292716 | MS.gene012014:intron | 30.0% | |
| AGCATACTTTGATATAGTCA+AGG | - | chr8.2:28292054-28292073 | MS.gene012014:intron | 30.0% | |
| AGGAAATTGAGTGAAAACAA+GGG | - | chr8.2:28293509-28293528 | MS.gene012014:intron | 30.0% | |
| CATCATTTGGAAAATGTTCA+GGG | - | chr8.2:28292172-28292191 | MS.gene012014:intron | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr8.2:28294415-28294434 | MS.gene012014:intron | 30.0% | |
| TAACAAAGTTCTTGTGAAGA+GGG | + | chr8.2:28294123-28294142 | None:intergenic | 30.0% | |
| TAAGTGAACATTAAGGTATG+AGG | - | chr8.2:28292696-28292715 | MS.gene012014:intron | 30.0% | |
| TATTGATGAATCTGAATCTC+TGG | + | chr8.2:28291745-28291764 | None:intergenic | 30.0% | |
| TGAATATTCTGGCAACTATT+TGG | + | chr8.2:28293660-28293679 | None:intergenic | 30.0% | |
| TTCGTAATCGATCATTTGAA+TGG | + | chr8.2:28293003-28293022 | None:intergenic | 30.0% | |
| ! | AAGACTATGATGGAAAGTTA+AGG | + | chr8.2:28294029-28294048 | None:intergenic | 30.0% |
| ! | ATCTCCTTTTCAAAATCCTT+TGG | + | chr8.2:28294322-28294341 | None:intergenic | 30.0% |
| ! | CTTAGGTTTTCTTTTACATG+TGG | - | chr8.2:28294788-28294807 | MS.gene012014:CDS | 30.0% |
| ! | GATAGTTTGAAGTTTGAACT+TGG | - | chr8.2:28293356-28293375 | MS.gene012014:CDS | 30.0% |
| ! | TATTTGAAATTGCTCCAAGA+AGG | + | chr8.2:28292222-28292241 | None:intergenic | 30.0% |
| ! | TTTTGTGTACTTCATGACAT+TGG | - | chr8.2:28294000-28294019 | MS.gene012014:intron | 30.0% |
| !! | ACATCCAAAGGATTTTGAAA+AGG | - | chr8.2:28294315-28294334 | MS.gene012014:intron | 30.0% |
| !!! | ATGCTTTTTTATCCTCTTTG+TGG | - | chr8.2:28294727-28294746 | MS.gene012014:CDS | 30.0% |
| !!! | CTTGGTTTTTTAGTTCCAAA+TGG | + | chr8.2:28292377-28292396 | None:intergenic | 30.0% |
| !!! | CTTTTTTATTCTCGTATCCT+TGG | - | chr8.2:28293955-28293974 | MS.gene012014:intron | 30.0% |
| !!! | GTCAGAATCGTTGTTATTTT+GGG | - | chr8.2:28294750-28294769 | MS.gene012014:CDS | 30.0% |
| !!! | TATATTTTTTTGGTAGTGGC+CGG | + | chr8.2:28294456-28294475 | None:intergenic | 30.0% |
| !!! | TCAGAATCGTTGTTATTTTG+GGG | - | chr8.2:28294751-28294770 | MS.gene012014:CDS | 30.0% |
| !!! | TGCTTTTTTATCCTCTTTGT+GGG | - | chr8.2:28294728-28294747 | MS.gene012014:CDS | 30.0% |
| !!! | TTGGTGTTTTTGTTATTTGG+AGG | - | chr8.2:28292779-28292798 | MS.gene012014:intron | 30.0% |
| AACAACCAGAGTGAATAACT+TGG | - | chr8.2:28291894-28291913 | MS.gene012014:intron | 35.0% | |
| AACAAGAAGCTTTCGTTGAT+AGG | - | chr8.2:28291483-28291502 | MS.gene012014:intron | 35.0% | |
| ACACAAAAAAGCAGAGAGTA+AGG | + | chr8.2:28293988-28294007 | None:intergenic | 35.0% | |
| ACTTGGATAACAAACCGATA+AGG | - | chr8.2:28291911-28291930 | MS.gene012014:intron | 35.0% | |
| AGCCCTTAAGCTATTAAGAA+TGG | + | chr8.2:28291845-28291864 | None:intergenic | 35.0% | |
| CAGGAAATTGAGTGAAAACA+AGG | - | chr8.2:28293508-28293527 | MS.gene012014:intron | 35.0% | |
| CATCTAGAAGAATCAACTCA+GGG | - | chr8.2:28293678-28293697 | MS.gene012014:intron | 35.0% | |
| CCAACATATCAGTAACAACA+GGG | + | chr8.2:28292114-28292133 | None:intergenic | 35.0% | |
| CCAAGTTTAGATTCTTAAGG+CGG | - | chr8.2:28292392-28292411 | MS.gene012014:intron | 35.0% | |
| CTAACATGGAGTGGTAATTT+AGG | + | chr8.2:28291588-28291607 | None:intergenic | 35.0% | |
| CTATTGTGTGGAATGAGTAT+AGG | - | chr8.2:28291656-28291675 | MS.gene012014:intron | 35.0% | |
| CTTTCTCTATCTTGTGGTAT+TGG | - | chr8.2:28294682-28294701 | MS.gene012014:CDS | 35.0% | |
| GCATCATTTGGAAAATGTTC+AGG | - | chr8.2:28292171-28292190 | MS.gene012014:intron | 35.0% | |
| GGAAATTGAGTGAAAACAAG+GGG | - | chr8.2:28293510-28293529 | MS.gene012014:intron | 35.0% | |
| GGTAGTAACTAAGACTATGA+TGG | + | chr8.2:28294039-28294058 | None:intergenic | 35.0% | |
| GTAACAAAGTTCTTGTGAAG+AGG | + | chr8.2:28294124-28294143 | None:intergenic | 35.0% | |
| GTTATCCAAGTTATTCACTC+TGG | + | chr8.2:28291902-28291921 | None:intergenic | 35.0% | |
| TAAAACCAACTCTAGTGCTT+TGG | - | chr8.2:28291969-28291988 | MS.gene012014:intron | 35.0% | |
| TAGTTACTACCTCATCCATT+AGG | - | chr8.2:28294048-28294067 | MS.gene012014:intron | 35.0% | |
| TATGTCTTCTCTCTACTTCA+TGG | - | chr8.2:28293724-28293743 | MS.gene012014:intron | 35.0% | |
| TCATCTAGAAGAATCAACTC+AGG | - | chr8.2:28293677-28293696 | MS.gene012014:intron | 35.0% | |
| TCCAACATATCAGTAACAAC+AGG | + | chr8.2:28292115-28292134 | None:intergenic | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | - | chr8.2:28294420-28294439 | MS.gene012014:intron | 35.0% | |
| TGTAAACATGATGCACCTAA+TGG | + | chr8.2:28294066-28294085 | None:intergenic | 35.0% | |
| TTCAACCAGTTTGGACTTTA+TGG | + | chr8.2:28291876-28291895 | None:intergenic | 35.0% | |
| TTCTACAGATCTTTGACAAC+AGG | - | chr8.2:28293489-28293508 | MS.gene012014:intron | 35.0% | |
| TTCTCAATCCATCTTCTTTG+CGG | - | chr8.2:28292933-28292952 | MS.gene012014:intron | 35.0% | |
| TTTGTATGATAGGATAGGCT+CGG | + | chr8.2:28291947-28291966 | None:intergenic | 35.0% | |
| ! | AAAATCCAAAGCACTAGAGT+TGG | + | chr8.2:28291977-28291996 | None:intergenic | 35.0% |
| ! | AGTTTATGAGAGCATAGATC+TGG | - | chr8.2:28293197-28293216 | MS.gene012014:intron | 35.0% |
| ! | ATGGATTGAGAATGTGAAGA+CGG | + | chr8.2:28292925-28292944 | None:intergenic | 35.0% |
| ! | TTTTACATGTGGTTCGCAAT+TGG | - | chr8.2:28294799-28294818 | MS.gene012014:CDS | 35.0% |
| !! | AACTCTAGTGCTTTGGATTT+TGG | - | chr8.2:28291976-28291995 | MS.gene012014:intron | 35.0% |
| !! | CTATCTTGTGGTATTGGTTA+TGG | - | chr8.2:28294688-28294707 | MS.gene012014:CDS | 35.0% |
| !! | GTTTTAATATGGGCAAGCTA+TGG | + | chr8.2:28292619-28292638 | None:intergenic | 35.0% |
| !! | TTTGTTTTCAGTCATACCTG+CGG | - | chr8.2:28294601-28294620 | MS.gene012014:intron | 35.0% |
| !!! | ATATTTTTTTGGTAGTGGCC+GGG | + | chr8.2:28294455-28294474 | None:intergenic | 35.0% |
| !!! | GGTCAGAATCGTTGTTATTT+TGG | - | chr8.2:28294749-28294768 | MS.gene012014:CDS | 35.0% |
| AAACATGACCGCAAAGAAGA+TGG | + | chr8.2:28292944-28292963 | None:intergenic | 40.0% | |
| AACCACTTGAGCGATATCTT+GGG | + | chr8.2:28294287-28294306 | None:intergenic | 40.0% | |
| ACGTCCTGGAACAAAAACTT+TGG | + | chr8.2:28291524-28291543 | None:intergenic | 40.0% | |
| ACTTCTGAGCTTTCAGAATG+AGG | + | chr8.2:28293180-28293199 | None:intergenic | 40.0% | |
| AGTATTTGAGTGCCAACCTT+AGG | - | chr8.2:28292653-28292672 | MS.gene012014:intron | 40.0% | |
| ATTACCACTCCATGTTAGCT+TGG | - | chr8.2:28291590-28291609 | MS.gene012014:CDS | 40.0% | |
| CACTACCATAAAGTCCAAAC+TGG | - | chr8.2:28291868-28291887 | MS.gene012014:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+GGG | - | chr8.2:28294422-28294441 | MS.gene012014:intron | 40.0% | |
| CATGGAGTGGTAATTTAGGA+AGG | + | chr8.2:28291584-28291603 | None:intergenic | 40.0% | |
| CCCTGTTGTTACTGATATGT+TGG | - | chr8.2:28292111-28292130 | MS.gene012014:intron | 40.0% | |
| CCGCCTTAAGAATCTAAACT+TGG | + | chr8.2:28292395-28292414 | None:intergenic | 40.0% | |
| CTGAATCTCTGGATTCTGAA+TGG | + | chr8.2:28291734-28291753 | None:intergenic | 40.0% | |
| CTTAGTATGGTTCAAGTGGT+AGG | - | chr8.2:28294494-28294513 | MS.gene012014:intron | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr8.2:28294421-28294440 | MS.gene012014:intron | 40.0% | |
| GGAATCAACTCTTAATCGAC+TGG | - | chr8.2:28291544-28291563 | MS.gene012014:intron | 40.0% | |
| GGTCAACTTTCTCTATCTTG+TGG | - | chr8.2:28294676-28294695 | MS.gene012014:intron | 40.0% | |
| GTAACAACAGGGAACTCAAT+AGG | + | chr8.2:28292103-28292122 | None:intergenic | 40.0% | |
| GTATTTGAGTGCCAACCTTA+GGG | - | chr8.2:28292654-28292673 | MS.gene012014:intron | 40.0% | |
| GTGGTAATTTAGGAAGGAAG+TGG | + | chr8.2:28291578-28291597 | None:intergenic | 40.0% | |
| TCAACTCTTAATCGACTGGT+CGG | - | chr8.2:28291548-28291567 | MS.gene012014:CDS | 40.0% | |
| TCATGGAAATGCAGATGTGT+TGG | - | chr8.2:28293741-28293760 | MS.gene012014:intron | 40.0% | |
| TCCAAGAAGGAAAATGAGGT+AGG | + | chr8.2:28292209-28292228 | None:intergenic | 40.0% | |
| TCGGGAAATAGCAACCTTAT+CGG | + | chr8.2:28291928-28291947 | None:intergenic | 40.0% | |
| TTCGCTTAGTATGGTTCAAG+TGG | - | chr8.2:28294490-28294509 | MS.gene012014:intron | 40.0% | |
| TTGCTCCAAGAAGGAAAATG+AGG | + | chr8.2:28292213-28292232 | None:intergenic | 40.0% | |
| TTGTATGATAGGATAGGCTC+GGG | + | chr8.2:28291946-28291965 | None:intergenic | 40.0% | |
| TTTGGAAAATGTTCAGGGTG+TGG | - | chr8.2:28292177-28292196 | MS.gene012014:intron | 40.0% | |
| ! | AAAGTTTTTGTTCCAGGACG+TGG | - | chr8.2:28291523-28291542 | MS.gene012014:intron | 40.0% |
| ! | ACCTACCTCATTTTCCTTCT+TGG | - | chr8.2:28292205-28292224 | MS.gene012014:intron | 40.0% |
| ! | TGAGCCAAAGTTTTTGTTCC+AGG | - | chr8.2:28291517-28291536 | MS.gene012014:intron | 40.0% |
| ! | TGTTTCTTTGGTGATCATGC+AGG | - | chr8.2:28293820-28293839 | MS.gene012014:intron | 40.0% |
| ! | TTGTTTTCAGTCATACCTGC+GGG | - | chr8.2:28294602-28294621 | MS.gene012014:intron | 40.0% |
| !! | AGTGCTTTGGATTTTGGAAG+TGG | - | chr8.2:28291982-28292001 | MS.gene012014:intron | 40.0% |
| !! | AGTTGTTTGGCTTTGGCATT+TGG | - | chr8.2:28293883-28293902 | MS.gene012014:intron | 40.0% |
| !!! | TATTTTTTTGGTAGTGGCCG+GGG | + | chr8.2:28294454-28294473 | None:intergenic | 40.0% |
| AACAGGGAACTCAATAGGAG+TGG | + | chr8.2:28292098-28292117 | None:intergenic | 45.0% | |
| AACGATTCTGACCCACAAAG+AGG | + | chr8.2:28294742-28294761 | None:intergenic | 45.0% | |
| AATACAATGGCAGCTCCCTA+AGG | + | chr8.2:28292672-28292691 | None:intergenic | 45.0% | |
| ACAAGCGCTTATCACAAAGC+AGG | + | chr8.2:28293037-28293056 | None:intergenic | 45.0% | |
| ACCACTTGAGCGATATCTTG+GGG | + | chr8.2:28294286-28294305 | None:intergenic | 45.0% | |
| ACTTCATACAGTGAGCCAAG+TGG | - | chr8.2:28294635-28294654 | MS.gene012014:intron | 45.0% | |
| AGCCAAACAACTGCTGGTAA+TGG | + | chr8.2:28293875-28293894 | None:intergenic | 45.0% | |
| AGTATGGTTCAAGTGGTAGG+TGG | - | chr8.2:28294497-28294516 | MS.gene012014:intron | 45.0% | |
| ATATCGCTCAAGTGGTTGAG+TGG | - | chr8.2:28294290-28294309 | MS.gene012014:intron | 45.0% | |
| CAACCACTTGAGCGATATCT+TGG | + | chr8.2:28294288-28294307 | None:intergenic | 45.0% | |
| CAAGCGCTTATCACAAAGCA+GGG | + | chr8.2:28293036-28293055 | None:intergenic | 45.0% | |
| CACCATTACCAGCAGTTGTT+TGG | - | chr8.2:28293870-28293889 | MS.gene012014:intron | 45.0% | |
| CAGAGAGATGGAAAGAGTGA+TGG | - | chr8.2:28291443-28291462 | MS.gene012014:CDS | 45.0% | |
| CAGTAGAAGCCAAGCTAACA+TGG | + | chr8.2:28291602-28291621 | None:intergenic | 45.0% | |
| CTCTGGTTGTTCAACCAGTT+TGG | + | chr8.2:28291885-28291904 | None:intergenic | 45.0% | |
| CTTCACTAAACGACAGCACT+TGG | + | chr8.2:28292300-28292319 | None:intergenic | 45.0% | |
| GACAAAGCAGAGTTGTCTTG+TGG | + | chr8.2:28292344-28292363 | None:intergenic | 45.0% | |
| GGAAGCAAACAGAACGATCA+TGG | + | chr8.2:28292279-28292298 | None:intergenic | 45.0% | |
| GTAAGAACTGCTCAGAGAGA+TGG | - | chr8.2:28291431-28291450 | MS.gene012014:CDS | 45.0% | |
| TGGATAGTAAGTGCCCTCTT+TGG | - | chr8.2:28292760-28292779 | MS.gene012014:intron | 45.0% | |
| ! | AGAAGCCTTATGGTTTGCAG+GGG | - | chr8.2:28292810-28292829 | MS.gene012014:intron | 45.0% |
| ! | CAGAAGCCTTATGGTTTGCA+GGG | - | chr8.2:28292809-28292828 | MS.gene012014:intron | 45.0% |
| ! | CATGATGCACCTAATGGATG+AGG | + | chr8.2:28294060-28294079 | None:intergenic | 45.0% |
| ! | GAGAGCATAGATCTGGTGAA+AGG | - | chr8.2:28293204-28293223 | MS.gene012014:intron | 45.0% |
| ! | GAGAGTAAGGTATCACACCA+AGG | + | chr8.2:28293975-28293994 | None:intergenic | 45.0% |
| ! | GCTGTTGTTTACAGAGCAAG+TGG | - | chr8.2:28292740-28292759 | MS.gene012014:intron | 45.0% |
| ! | TAAGAGTTGATTCCACGTCC+TGG | + | chr8.2:28291538-28291557 | None:intergenic | 45.0% |
| ! | TACCAGCAGTTGTTTGGCTT+TGG | - | chr8.2:28293876-28293895 | MS.gene012014:intron | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr8.2:28294393-28294412 | MS.gene012014:intron | 45.0% |
| ACAGTGAGCCAAGTGGTTGT+TGG | - | chr8.2:28294642-28294661 | MS.gene012014:intron | 50.0% | |
| AGAATGTGAAGACGGCATCC+CGG | + | chr8.2:28292917-28292936 | None:intergenic | 50.0% | |
| AGTGGTTGTTGGAGCTGTTG+TGG | - | chr8.2:28294653-28294672 | MS.gene012014:intron | 50.0% | |
| CAACAGCTCCAACAACCACT+TGG | + | chr8.2:28294653-28294672 | None:intergenic | 50.0% | |
| GAAGCCAAGCTAACATGGAG+TGG | + | chr8.2:28291597-28291616 | None:intergenic | 50.0% | |
| GGCATGATGCAGAAGCCTTA+TGG | - | chr8.2:28292800-28292819 | MS.gene012014:intron | 50.0% | |
| GGGTCAGATTTCACGGTTGA+AGG | + | chr8.2:28292895-28292914 | None:intergenic | 50.0% | |
| GGGTCTGCAGTACTTTGCTT+AGG | - | chr8.2:28294771-28294790 | MS.gene012014:CDS | 50.0% | |
| GGTTGAGTGGTGACATCCAA+AGG | - | chr8.2:28294303-28294322 | MS.gene012014:intron | 50.0% | |
| GTGGTTGTTGGAGCTGTTGT+GGG | - | chr8.2:28294654-28294673 | MS.gene012014:intron | 50.0% | |
| TCAACCGTGAAATCTGACCC+CGG | - | chr8.2:28292895-28292914 | MS.gene012014:intron | 50.0% | |
| TCCCCAAGATATCGCTCAAG+TGG | - | chr8.2:28294282-28294301 | MS.gene012014:intron | 50.0% | |
| TGCCAAAGCCAAACAACTGC+TGG | + | chr8.2:28293881-28293900 | None:intergenic | 50.0% | |
| TGGTTGTTGGAGCTGTTGTG+GGG | - | chr8.2:28294655-28294674 | MS.gene012014:intron | 50.0% | |
| ! | AAGCCTTATGGTTTGCAGGG+GGG | - | chr8.2:28292812-28292831 | MS.gene012014:intron | 50.0% |
| ! | GAAGCCTTATGGTTTGCAGG+GGG | - | chr8.2:28292811-28292830 | MS.gene012014:intron | 50.0% |
| ! | GAAGTTTTTGTGACACCCGC+AGG | + | chr8.2:28294620-28294639 | None:intergenic | 50.0% |
| ! | GCAGAAGCCTTATGGTTTGC+AGG | - | chr8.2:28292808-28292827 | MS.gene012014:intron | 50.0% |
| AATGTGAAGACGGCATCCCG+GGG | + | chr8.2:28292915-28292934 | None:intergenic | 55.0% | |
| AGACCCCCCTGCAAACCATA+AGG | + | chr8.2:28292818-28292837 | None:intergenic | 55.0% | |
| CAACCGTGAAATCTGACCCC+GGG | - | chr8.2:28292896-28292915 | MS.gene012014:intron | 55.0% | |
| CAATGGCAGCTCCCTAAGGT+TGG | + | chr8.2:28292668-28292687 | None:intergenic | 55.0% | |
| CATCCCGGGGTCAGATTTCA+CGG | + | chr8.2:28292902-28292921 | None:intergenic | 55.0% | |
| CCAACTGAGCTAAGCTCACG+AGG | + | chr8.2:28294391-28294410 | None:intergenic | 55.0% | |
| CCTCGTGAGCTTAGCTCAGT+TGG | - | chr8.2:28294388-28294407 | MS.gene012014:intron | 55.0% | |
| GAATGTGAAGACGGCATCCC+GGG | + | chr8.2:28292916-28292935 | None:intergenic | 55.0% | |
| GGTTCAAGTGGTAGGTGGTG+TGG | - | chr8.2:28294502-28294521 | MS.gene012014:intron | 55.0% | |
| TCAAGTGGTAGGTGGTGTGG+CGG | - | chr8.2:28294505-28294524 | MS.gene012014:intron | 55.0% | |
| AAGGTCCGGGGTTCAAACCC+CGG | - | chr8.2:28294434-28294453 | MS.gene012014:intron | 60.0% | |
| AGTGGCCGGGGTTTGAACCC+CGG | + | chr8.2:28294442-28294461 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 28291419 | 28294826 | 28291419 | ID=MS.gene012014 |
| chr8.2 | mRNA | 28291419 | 28294826 | 28291419 | ID=MS.gene012014.t1;Parent=MS.gene012014 |
| chr8.2 | exon | 28294680 | 28294826 | 28294680 | ID=MS.gene012014.t1.exon1;Parent=MS.gene012014.t1 |
| chr8.2 | CDS | 28294680 | 28294826 | 28294680 | ID=cds.MS.gene012014.t1;Parent=MS.gene012014.t1 |
| chr8.2 | exon | 28293269 | 28293491 | 28293269 | ID=MS.gene012014.t1.exon2;Parent=MS.gene012014.t1 |
| chr8.2 | CDS | 28293269 | 28293491 | 28293269 | ID=cds.MS.gene012014.t1;Parent=MS.gene012014.t1 |
| chr8.2 | exon | 28292330 | 28292403 | 28292330 | ID=MS.gene012014.t1.exon3;Parent=MS.gene012014.t1 |
| chr8.2 | CDS | 28292330 | 28292403 | 28292330 | ID=cds.MS.gene012014.t1;Parent=MS.gene012014.t1 |
| chr8.2 | exon | 28291548 | 28291633 | 28291548 | ID=MS.gene012014.t1.exon4;Parent=MS.gene012014.t1 |
| chr8.2 | CDS | 28291548 | 28291633 | 28291548 | ID=cds.MS.gene012014.t1;Parent=MS.gene012014.t1 |
| chr8.2 | exon | 28291419 | 28291464 | 28291419 | ID=MS.gene012014.t1.exon5;Parent=MS.gene012014.t1 |
| chr8.2 | CDS | 28291419 | 28291464 | 28291419 | ID=cds.MS.gene012014.t1;Parent=MS.gene012014.t1 |
| Gene Sequence |
| Protein sequence |
