AlfalfaGEDB | MS.gene012196

M. sativa cultivar XinJiangDaYe / MS.gene012196

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012196.t1	XP_003609981.1	89	628	64	2	1	624	1	627	3.20E-279	970.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012196.t1	Q9M1L7	51.6	638	286	9	1	622	1	631	1.4e-134	481.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012196.t1	G7JS80	89.0	628	64	2	1	624	1	627	2.3e-279	970.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000664	MS.gene012196	PPI
MS.gene008798	MS.gene012196	PPI
MS.gene012196	MS.gene97977	PPI
MS.gene012196	MS.gene49992	PPI
MS.gene012196	MS.gene040814	PPI
MS.gene012196	MS.gene056484	PPI
MS.gene012196	MS.gene91381	PPI
MS.gene012196	MS.gene021436	PPI
MS.gene013713	MS.gene012196	PPI
MS.gene02510	MS.gene012196	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012196.t1	MTR_4g124990	96.656	628	16	2	1	624	1	627	0.0	1239
MS.gene012196.t1	MTR_2g042710	68.092	608	186	6	22	624	26	630	0.0	837
MS.gene012196.t1	MTR_8g021350	51.553	644	269	9	22	623	29	671	0.0	632
MS.gene012196.t1	MTR_2g105900	40.852	634	328	12	20	623	2	618	4.40e-154	458
MS.gene012196.t1	MTR_8g101260	39.683	630	343	10	6	623	13	617	5.48e-147	439
MS.gene012196.t1	MTR_6g093050	40.711	619	326	13	23	623	22	617	1.24e-145	436
MS.gene012196.t1	MTR_8g087420	38.291	632	351	9	4	623	8	612	1.70e-142	428
MS.gene012196.t1	MTR_1g009270	38.352	631	357	10	3	623	7	615	1.38e-141	427
MS.gene012196.t1	MTR_3g093710	33.546	626	349	18	24	623	31	615	4.90e-100	318
MS.gene012196.t1	MTR_1g110280	34.259	648	363	16	11	623	19	638	1.58e-98	315

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene012196.t1	AT3G42880	51.406	640	288	10	1	624	1	633	0.0	634
MS.gene012196.t1	AT5G20690	50.000	642	271	12	23	624	28	659	0.0	612
MS.gene012196.t1	AT1G72460	46.215	634	310	13	8	619	6	630	2.77e-167	492
MS.gene012196.t1	AT5G35390	39.553	627	363	8	1	623	15	629	5.40e-150	448
MS.gene012196.t1	AT2G07040	39.005	623	357	9	4	622	9	612	1.09e-142	429
MS.gene012196.t1	AT3G20190	39.803	608	347	9	24	623	51	647	2.44e-141	427
MS.gene012196.t1	AT4G31250	39.077	650	340	14	7	622	13	640	1.10e-139	422
MS.gene012196.t1	AT1G50610	40.168	595	320	14	24	598	46	624	9.31e-135	410
MS.gene012196.t1	AT3G02880	36.683	627	369	17	3	622	10	615	2.05e-113	353
MS.gene012196.t1	AT5G16590	36.306	628	361	18	9	622	11	613	3.82e-111	347

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Find 132 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCGATGTTTATTGTCT+CGG	0.492242	8.1:-7083186	MS.gene012196:CDS
AAAATCCATGTTCTTCAAGA+TGG	0.385015	8.1:-7084739	MS.gene012196:CDS
AAACACAACAAATAGGGCAG+CGG	0.657596	8.1:+7084112	None:intergenic
AAACTAATGGTTCTTAAGGT+TGG	0.381046	8.1:+7084620	None:intergenic
AAAGTTTATTGGAATTCTTT+TGG	0.351136	8.1:-7084135	MS.gene012196:CDS
AAATCCATGTTCTTCAAGAT+GGG	0.505842	8.1:-7084738	MS.gene012196:CDS
AAATGGAAGAGGAATGAGAA+GGG	0.521398	8.1:+7084837	None:intergenic
AACAAAACTAATGGTTCTTA+AGG	0.306816	8.1:+7084616	None:intergenic
AACACGTTTAAAGATAGTGA+AGG	0.596436	8.1:-7083424	MS.gene012196:CDS
AAGAGATTGCGTGTTTGTGA+AGG	0.634535	8.1:+7084781	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCGATGTTTATTGTCT+CGG	-	chr8.1:7084610-7084629	MS.gene012196:CDS	30.0%
AAAATCCATGTTCTTCAAGA+TGG	-	chr8.1:7083057-7083076	MS.gene012196:CDS	30.0%
AAACTAATGGTTCTTAAGGT+TGG	+	chr8.1:7083179-7083198	None:intergenic	30.0%
AAATCCATGTTCTTCAAGAT+GGG	-	chr8.1:7083058-7083077	MS.gene012196:CDS	30.0%
AACACGTTTAAAGATAGTGA+AGG	-	chr8.1:7084372-7084391	MS.gene012196:CDS	30.0%
AATGAGAATAAAACGAACAG+CGG	+	chr8.1:7082919-7082938	None:intergenic	30.0%
ACACGTTTAAAGATAGTGAA+GGG	-	chr8.1:7084373-7084392	MS.gene012196:CDS	30.0%
ACATATAACAAGCTTCCTTT+AGG	+	chr8.1:7084187-7084206	None:intergenic	30.0%
ATAAAGCAGCTATGACTAAT+GGG	-	chr8.1:7083999-7084018	MS.gene012196:CDS	30.0%
ATGTCTAACAACAAGTTACA+AGG	-	chr8.1:7083476-7083495	MS.gene012196:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.1	gene	7082912	7084906	7082912	ID=MS.gene012196
chr8.1	mRNA	7082912	7084906	7082912	ID=MS.gene012196.t1;Parent=MS.gene012196
chr8.1	exon	7083604	7084906	7083604	ID=MS.gene012196.t1.exon1;Parent=MS.gene012196.t1
chr8.1	CDS	7083604	7084906	7083604	ID=cds.MS.gene012196.t1;Parent=MS.gene012196.t1
chr8.1	exon	7082912	7083483	7082912	ID=MS.gene012196.t1.exon2;Parent=MS.gene012196.t1
chr8.1	CDS	7082912	7083483	7082912	ID=cds.MS.gene012196.t1;Parent=MS.gene012196.t1

Gene Sequence

>MS.gene012196

ATGGCCGCTGTTCGTTTTATTCTCATTTTCTTTCTTCTCATCTCTCTCCCTTCTCATTCCTCTTCCATTTCTGAAGCTGAAGCTCTTCTCAAACTCAAACAATCCTTCACAAACACGCAATCTCTTGCATCATGGCTTCCTAATCAAAATCCATGTTCTTCAAGATGGGTTGGTGTCATTTGTTTCGACAATGTCGTCTCAAGTCTTCATCTTACTGATTTAGGCCTCTCTGGAAAAATTGACATTGATTCTCTTTTACAGATTCCAACCTTAAGAACCATTAGTTTTGTTAACAACTCTTTCTCTGGTCCAATTCCTGAATTCAACAAACTTGGTGCTCTTAAAGCTCTTTATTTATCATTAAACCAATTCTCAGGACCTATTCCTCCTGATTTTTTTTCTCATTTAGGTTCTCTCAAGAAAGTATGGCTCAATAATAATAAATTCTCAGGAAATATACCAGACTCATTAACAAGTCTTCGTTTCCTCGGTGAGTTGCATCTTGAAAACAATGAGTTTTCTGGTCCTATTCCAGAATTCAAACAAGATATTAAATCTGTAGACATGTCTAACAACAAGTTACAAGGTGCAATACCTGGTACCTTGTCCAAGTATGAGGCAAAATCTTTTGCAGGAAATGAAGAGCTTTGTGGGAAGCCACTTGACAAAGCATGCGATCCTTCTTCGGATTTAACGCCACCATCTGGCGATGGATCCGGACAAGATGGTGGTGGTACTGGTTGGGCTTTAAAGTTTATTGGAATTCTTTTGGCCGCTGCCCTATTTGTTGTGTTTGTCACGTTTATTAAATCAAAACGTACAAAGGACAACGATTTCAGTGTTATGAGTAGAGAAAATAATGAAGATATAATTCCAGTTCATGTTCCTATCTCAAAACATAGCTCATCAAAACATAGCAGAGCATCAGAAAGTAGTGGGGGGAAGAAGGAATCTAGGAGAGGTCATTCAAAGAGTGGTGGAATGGGCGATCTTGTAATGGTGAATGATGAAAAGGGTGTGTTTGGTTTACCTGATTTGATGAAAGCTGCTGCTGAGGTTTTGGGAAATGGTGGATTAGGTTCTGCTTATAAAGCAGCTATGACTAATGGGTTATCTGTGGTTGTGAAGAGGATGAGGGAGATGAATAAAGTAAGCAGAGATATATTTGATGCCGAGATGAGACGGTTTGGGAGACTTAGAAACCGTAATATTTTGACTCCTTTGGCTTACCATTACCGCAGGGAGGAGAAGTTATTTGTTACTGAATATATGCCTAAAGGAAGCTTGTTATATGTCTTGCATGGTAATGCTGTCACATTTTATTTCTTTTCCTTTAATGAGCTTGTTATATCTCAAATTTGGTGCATTCATGTGTTATTTTATATTCATTTATACACATTCATGTGTAATGTTTGTTGTACAGGTGATAGAGGAACAAGTCATGCTGAACTAAATTGGCCAACACGTTTAAAGATAGTGAAGGGAATTGCACGTGGATTGACATTTCTTTATACTGAATTTGAATCCGAAGACCTGCCACATGGAAACCTCAAATCAAGCAATATACTACTAGCTGATAATTATGAGCCACTCTTAAGTGACTTCGCATTTCATCCATTAATCAACTCAAGTCATGCAACACAAACAATGTTTGCATACAAAACTCCTGATTACGTTCTTTACCAACATGTTTCACAGAAAACCGATGTTTATTGTCTCGGAATCATCATTCTTGAAATCATTACAGGGAAATTCCCTTCTCAATATCACAGTAATGGTAAAGGTGGTACTGATGTTGTTCAATGGGTGTTCACAGCAATTTCTGAGAGAAGAGAAGCTGAATTGATTGATCCAGAGTTGACAGCAAACAACCAAGATTCAATTAATCATATGTTGCAACTTCTTCAAATTGGGGCTGCTTGCACAGAAAGTAACCCGGAACAACGACTTAACATGAAGGAAGCAATTAGGAGGATAGAGGAATTACAAGTTTAA

Protein sequence

>MS.gene012196.t1

MAAVRFILIFFLLISLPSHSSSISEAEALLKLKQSFTNTQSLASWLPNQNPCSSRWVGVICFDNVVSSLHLTDLGLSGKIDIDSLLQIPTLRTISFVNNSFSGPIPEFNKLGALKALYLSLNQFSGPIPPDFFSHLGSLKKVWLNNNKFSGNIPDSLTSLRFLGELHLENNEFSGPIPEFKQDIKSVDMSNNKLQGAIPGTLSKYEAKSFAGNEELCGKPLDKACDPSSDLTPPSGDGSGQDGGGTGWALKFIGILLAAALFVVFVTFIKSKRTKDNDFSVMSRENNEDIIPVHVPISKHSSSKHSRASESSGGKKESRRGHSKSGGMGDLVMVNDEKGVFGLPDLMKAAAEVLGNGGLGSAYKAAMTNGLSVVVKRMREMNKVSRDIFDAEMRRFGRLRNRNILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTSHAELNWPTRLKIVKGIARGLTFLYTEFESEDLPHGNLKSSNILLADNYEPLLSDFAFHPLINSSHATQTMFAYKTPDYVLYQHVSQKTDVYCLGIIILEIITGKFPSQYHSNGKGGTDVVQWVFTAISERREAELIDPELTANNQDSINHMLQLLQIGAACTESNPEQRLNMKEAIRRIEELQV