AlfalfaGEDB | MS.gene49992

M. sativa cultivar XinJiangDaYe / MS.gene49992

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF01657.20 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49992.t1	XP_024626449.1	95	661	33	0	1	661	1	661	0.00E+00	1107.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49992.t1	Q9M0X5	53.1	653	282	7	8	651	7	644	1.8e-175	617.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49992.t1	G8A0X6	95.0	661	33	0	1	661	1	661	0.0e+00	1107.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049993	MS.gene49992	0.852954	3.29E-61	-1.69E-46
MS.gene050640	MS.gene49992	0.815994	6.95E-52	-1.69E-46
MS.gene051525	MS.gene49992	0.839646	1.40E-57	-1.69E-46
MS.gene051588	MS.gene49992	0.806209	9.19E-50	-1.69E-46
MS.gene051980	MS.gene49992	0.808901	2.47E-50	-1.69E-46
MS.gene052011	MS.gene49992	-0.855799	4.95E-62	-1.69E-46
MS.gene052589	MS.gene49992	0.84125	5.32E-58	-1.69E-46
MS.gene053330	MS.gene49992	0.805862	1.09E-49	-1.69E-46
MS.gene053873	MS.gene49992	0.829869	4.04E-55	-1.69E-46
MS.gene054102	MS.gene49992	0.863534	2.32E-64	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000664	MS.gene49992	PPI
MS.gene008798	MS.gene49992	PPI
MS.gene011787	MS.gene49992	PPI
MS.gene012196	MS.gene49992	PPI
MS.gene014901	MS.gene49992	PPI
MS.gene025267	MS.gene49992	PPI
MS.gene026381	MS.gene49992	PPI
MS.gene028374	MS.gene49992	PPI
MS.gene029943	MS.gene49992	PPI
MS.gene037145	MS.gene49992	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene49992.t1	MTR_1g105650	94.705	661	35	0	1	661	1	661	1212
MS.gene49992.t1	MTR_1g104890	58.374	615	235	8	40	652	47	642	714
MS.gene49992.t1	MTR_1g105655	52.970	623	263	13	47	660	50	651	627
MS.gene49992.t1	MTR_1g105640	51.238	646	285	11	11	649	9	631	624
MS.gene49992.t1	MTR_1g105640	51.238	646	285	11	11	649	9	631	624
MS.gene49992.t1	MTR_1g105640	51.238	646	285	11	11	649	9	631	624
MS.gene49992.t1	MTR_1g105595	48.632	658	307	13	7	649	1	642	619
MS.gene49992.t1	MTR_0074s0060	49.311	653	266	8	12	650	6	607	613
MS.gene49992.t1	MTR_1g104890	58.614	534	200	8	40	571	47	561	611
MS.gene49992.t1	MTR_6g053000	49.381	646	313	8	12	654	6	640	608

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene49992.t1	AT4G05200	55.130	653	269	10	8	651	25	662	709
MS.gene49992.t1	AT4G05200	55.130	653	269	10	8	651	7	644	708
MS.gene49992.t1	AT4G23180	56.935	620	248	10	29	644	34	638	661
MS.gene49992.t1	AT4G23160	51.724	638	279	12	29	652	40	662	636
MS.gene49992.t1	AT4G23230	53.387	620	270	8	30	644	22	627	630
MS.gene49992.t1	AT4G23130	50.391	639	301	9	23	656	20	647	613
MS.gene49992.t1	AT4G23130	50.000	638	301	9	23	656	20	643	612
MS.gene49992.t1	AT4G23190	50.381	657	295	11	5	644	1	643	610
MS.gene49992.t1	AT4G23150	52.344	640	277	11	29	661	23	641	604
MS.gene49992.t1	AT3G45860	52.807	659	271	14	9	644	2	643	604

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Find 132 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAAAGGCTGTTGGAT+TGG	0.449830	1.1:+75662038	MS.gene49992:CDS
AAAGGCTGTTGGATTGGACA+AGG	0.649511	1.1:+75662044	MS.gene49992:CDS
AAAGTAGGAGTGATTGTTGG+AGG	0.571949	1.1:-75660285	None:intergenic
AAATCTCAAGGATTCCACAG+TGG	0.735392	1.1:-75661482	None:intergenic
AAATGGAACACCCTTGGAAT+TGG	0.366799	1.1:+75662667	MS.gene49992:CDS
AACACGAGGCCTTGTAGCCA+CGG	0.557873	1.1:-75659890	None:intergenic
AACATCTCAAACTCCGTTTA+CGG	0.355863	1.1:+75659703	MS.gene49992:CDS
AAGAGACTCTCTAAACACTC+GGG	0.661820	1.1:+75661709	MS.gene49992:CDS
AAGCTAGGTGAAGGTGGATT+TGG	0.358823	1.1:+75661553	MS.gene49992:CDS
AAGTCTGATGTATACAGTTT+TGG	0.370365	1.1:+75662427	MS.gene49992:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTAATGGTCCATGCT+TGG	-	chr1.1:75660490-75660509	None:intergenic	30.0%
AAACAATATCAGCCACAAAA+AGG	-	chr1.1:75662328-75662347	None:intergenic	30.0%
AAAGCTTTCTTTACTCACAT+AGG	-	chr1.1:75662530-75662549	None:intergenic	30.0%
AATATCTTCATGAAGATTCC+AGG	+	chr1.1:75662104-75662123	MS.gene49992:CDS	30.0%
AATATGGACCCCAAATTAAA+AGG	-	chr1.1:75661108-75661127	None:intergenic	30.0%
ACTTCTCAAGAATAAGCAAT+GGG	+	chr1.1:75660948-75660967	MS.gene49992:intron	30.0%
AGAGAATAACAATGCACTAA+AGG	+	chr1.1:75660431-75660450	MS.gene49992:intron	30.0%
ATTATATTACCTCCCAAAGT+AGG	-	chr1.1:75660303-75660322	None:intergenic	30.0%
CAAAAATAATCATAGGCCAA+AGG	+	chr1.1:75660775-75660794	MS.gene49992:intron	30.0%
GAACAGAAATAAAAGGTTGA+AGG	-	chr1.1:75659497-75659516	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	75659469	75662925	75659469	ID=MS.gene49992
chr1.1	mRNA	75659469	75662925	75659469	ID=MS.gene49992.t1;Parent=MS.gene49992
chr1.1	exon	75659469	75660312	75659469	ID=MS.gene49992.t1.exon1;Parent=MS.gene49992.t1
chr1.1	CDS	75659469	75660312	75659469	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1
chr1.1	exon	75661213	75661356	75661213	ID=MS.gene49992.t1.exon2;Parent=MS.gene49992.t1
chr1.1	CDS	75661213	75661356	75661213	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1
chr1.1	exon	75661467	75661588	75661467	ID=MS.gene49992.t1.exon3;Parent=MS.gene49992.t1
chr1.1	CDS	75661467	75661588	75661467	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1
chr1.1	exon	75661676	75661886	75661676	ID=MS.gene49992.t1.exon4;Parent=MS.gene49992.t1
chr1.1	CDS	75661676	75661886	75661676	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1
chr1.1	exon	75662032	75662269	75662032	ID=MS.gene49992.t1.exon5;Parent=MS.gene49992.t1
chr1.1	CDS	75662032	75662269	75662032	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1
chr1.1	exon	75662381	75662531	75662381	ID=MS.gene49992.t1.exon6;Parent=MS.gene49992.t1
chr1.1	CDS	75662381	75662531	75662381	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1
chr1.1	exon	75662650	75662925	75662650	ID=MS.gene49992.t1.exon7;Parent=MS.gene49992.t1
chr1.1	CDS	75662650	75662925	75662650	ID=cds.MS.gene49992.t1;Parent=MS.gene49992.t1

Gene Sequence

>MS.gene49992

ATGAATTACACCATGTCTTTGAATTCCTTCAACCTTTTATTTCTGTTCCTCTTCATTACCTTTCTCCTTAGCTCAACTACAAAAGCACAAAATCCTACTTATCTCTACCAGAATTGTTCAAGCAACAAAACCACATCCAACAGCACCTACAAATCAAACATCATAGCCCTTTTCTCTTCACTATCTTCCAACGCCACTACAAAGAATGAATTCTACAACACAGTCCCCAGCAGAAACATCTCAAACTCCGTTTACGGTCTATTCATGTGCAGAGGCGACGTTTCCTCTTCCCTCTGCAAACAATGTGTGGTAAACGCAACGCAGAAACTATCAACAGACACAGAATGCTCCTTATCCAAAGGAGCTGTAATCTGGTATGACGAATGCATGGTTCGATATTCCAACACCTCTTTTTTCTCCACCGTGGCTACAAGGCCTCGTGTTTTCTTATTGAACACCGGTAATATCACGAACCAGGAGACATTCATGCCTTTGTTGTTTGATACAATGAACAAAACAGCAGATAATGCGGCGAATTCATCTGTTGGTGCTAAGAAATACGCAACAAAGCAAGCTAGCATCTCTGGTTTTCAAACGCTTTATTGTATGGCTCAGTGTACAGAGGATTTATCACAACAAGATTGCAGAACGTGTCTTAGTGATGCCATTGGAGCTCTTCCACAGTGCTGTGATGGAAAGCAAGGTGGGAGAGTTTTGTTTCCTAGTTGTAATGTTAGATATGAATTATACCCTTTTTATCGAAACCTTGCTCCTTCACCATCACCAGCGGCTTCAGCAGCACCAGGGCTTTTTCCTCCTCCAACAATCACTCCTACTTTGGGAGGTAATATAATTTATGTTAGACATAATTTTTGATGAATTTTATAATAACTACTCATTAGGGTCACAATCATCGACCTATTTGACTGTTGCACGTAAATGTAGAAAAGTGTATGCATAAAAGAGAATAACAATGCACTAAAGGTGGCCTCTAATATGCACCCTTTTAAAAAAGGGTCCAAGCATGGACCATTAATTTTTTCCCACGGTAGCTGGTTATCAATTCTTTTAATAATTGTTTTAAGTTCTTTTTTGTTTAAACACATCTTTCTATCAAAATTACAGTTTCGTTCGGATTTTATTTTAGTATGAAATGAAAGTAGGAGTTATATGGTTTATCATAAATATAAATTCCAAAATGAATTGTTGAATTTTTTTTGTTTATTGTCAAACTCAAAATTATTGAGTATCAGCGGTGGCACTCAAGCATCAGTGTTGTTTGAAACCAAAATGGAACATCTTGTTCCAAAAATAATCATAGGCCAAAGGAGTTGTACAAGGATAAAAGAACGAATTTTGTTTCATATTTCTCAACAGAAACATTTGATCATAGAGACTAGAGTCTAGAGAGGAAGGTGATCTTTGTCTTCTCATTCTCCTAAGATAAAGATAGATCTAAGATTTATCAAGTATACTCTTACTTCTCAAGAATAAGCAATGGGTCATGGCAGTTGAAAGAGATGAAACATCTGTTGTGTTTTGAGTGTTGAAGATGAAAGAAGTTGTTTTTAATGTAGCTTTTTGCCAAGAACAATGACCGGCTGTAGCCTGTCACTTGCTGAGGTCCATTGGTGGTCCTTTTAATTTGGGGTCCATATTAGGGGCTCCCTGCACTAAATTACCTTTATCAACTAGTATTAAATAGAGGCTACAATTGAAAATAATATTAATTTTAATTTTGCAGGAAGTAGCGGGATCTCATCGGGGACAATTGTTGCAATTGTGGTTCCGATTTCTGTGGTCGCGCTGCTATTAATCGTTGGTGTTTGTTTCTTAAGTAAAAGAGCACGGAAGAAGAAGCATGACTCTGCAGCACAAGATCCGAAAAGTAAGAGCGCAGGTTAATTGAAAATAAGATTTTAAGTCTTAATTTGTTTCATATATGCATAATCTGCTGTCATAAGTTGATCTTATAGACCTATAATTTTTGCTTTATAGCTGAAACTGATATTTCCACTGTGGAATCCTTGAGATTTGATTTGAGTACACTTGAAGAAGCTACAAACAAATTCTCAGAAGCTAATAAGCTAGGTGAAGGTGGATTTGGTGAGGTTTACAAGGTATGGAGTTAACATTCTTTTGTTTCTTCATAACATGGAAATTATACCTACTGTCATATATACCATTTAATTTATGTGAAAATTCAGGGCTCACTTCCGAGCGGACAAGAAATAGCTGTCAAGAGACTCTCTAAACACTCGGGACAGGGCGGAGAACAATTTAAGAATGAGGTTGAGCTTGTTGCCCAACTTCAACATAGAAATTTAGCTAGGCTTCTAGGATTTTGCTTGGAAAGAGAAGAAAAGATACTTGTTTATGAATTTGTGGCCAACAAAAGCCTTGACTATATTCTTTTTGGTAGGTGCATCTTATCTGAACTCTTTATAGTGCACACTTCAAATGAGAAAACTGTACAATTGAATTCTTTTGTAAAATTTCTGTTTCATTAAACTGGTTTACTTTTATCGGGGATCATAGTCTTATGAATGGAATATTTATGCAGATCCTGAAAAGCAAAGGCTGTTGGATTGGACAAGGCGTTACAAGATTATTGGAGGGATTGCTCGAGGCATTCAATATCTTCATGAAGATTCCAGGCTTAAAATTATTCATCGTGATCTTAAAGCTAGCAACATATTGTTGGATGGAGATATGAATCCAAAAATCTCGGACTTTGGCATGGCAAAATTATTCGGAGTGGATCAAACTCAAGGAAATACCAGTAGAATAGTAGGCACATAGTAAGTACAAGTTTACATTATCATCTATGCCACATATATTTGTTGAAGTACTTGTCCTTTTTGTGGCTGATATTGTTTTATAGTGATGATAAATACGTGTTTGTGTTTCAGTGGTTACATGTCTCCGGAGTATGCAATGCATGGAGAGTTCTCGATAAAGTCTGATGTATACAGTTTTGGAGTACTCGTTATGGAGATTATAAGTGGCAAGAAGAGCAACTCTTTCTATGAAACAGGTGTTGCTGATGATTTAGTAACCTATGTGAGTAAAGAAAGCTTTAAATAATTAAATCTATGCTTCTTGAGTTTATTTAGTTTTTTCCTACTTTATAGTGATCACGTCATAACAAATACTCCTACTTGATGAAAATTTGAGACAGGCCTGGAAACTTTGGAAAAATGGAACACCCTTGGAATTGGTTGACCACGCAGTAAGAGAATCTTATACTCCAAATGAAGCTGTCAGATGCATCCATATTGGTTTACTATGTGTCCAAGAAGATCCAGAAGATAGACCTACAATGGCCACAATAGTGCTCATGTTAGATAGTTTCACTGTTACGCTACCGGTACCTAAGCAGCCTGCATTTTTTCTACGCAGTGGAACTGATTCAAACATGCCGACAATACAAATTAGTCAATCTACTACCGATTGA

Protein sequence

>MS.gene49992.t1

MNYTMSLNSFNLLFLFLFITFLLSSTTKAQNPTYLYQNCSSNKTTSNSTYKSNIIALFSSLSSNATTKNEFYNTVPSRNISNSVYGLFMCRGDVSSSLCKQCVVNATQKLSTDTECSLSKGAVIWYDECMVRYSNTSFFSTVATRPRVFLLNTGNITNQETFMPLLFDTMNKTADNAANSSVGAKKYATKQASISGFQTLYCMAQCTEDLSQQDCRTCLSDAIGALPQCCDGKQGGRVLFPSCNVRYELYPFYRNLAPSPSPAASAAPGLFPPPTITPTLGGSSGISSGTIVAIVVPISVVALLLIVGVCFLSKRARKKKHDSAAQDPKTETDISTVESLRFDLSTLEEATNKFSEANKLGEGGFGEVYKGSLPSGQEIAVKRLSKHSGQGGEQFKNEVELVAQLQHRNLARLLGFCLEREEKILVYEFVANKSLDYILFDPEKQRLLDWTRRYKIIGGIARGIQYLHEDSRLKIIHRDLKASNILLDGDMNPKISDFGMAKLFGVDQTQGNTSRIVGTYGYMSPEYAMHGEFSIKSDVYSFGVLVMEIISGKKSNSFYETGVADDLVTYAWKLWKNGTPLELVDHAVRESYTPNEAVRCIHIGLLCVQEDPEDRPTMATIVLMLDSFTVTLPVPKQPAFFLRSGTDSNMPTIQISQSTTD