Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012611.t1 | XP_024638386.1 | 98 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 3.30E-213 | 750.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012611.t1 | Q94B38 | 77.4 | 399 | 72 | 5 | 1 | 392 | 1 | 388 | 2.6e-166 | 586.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012611.t1 | A0A396IJA1 | 98.0 | 392 | 8 | 0 | 1 | 392 | 1 | 392 | 2.4e-213 | 750.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene02045 | MS.gene012611 | PPI |
MS.gene003243 | MS.gene012611 | PPI |
MS.gene03172 | MS.gene012611 | PPI |
MS.gene74587 | MS.gene012611 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012611.t1 | MTR_4g131800 | 90.338 | 414 | 17 | 1 | 1 | 391 | 1 | 414 | 0.0 | 703 |
MS.gene012611.t1 | MTR_2g022700 | 87.332 | 371 | 47 | 0 | 22 | 392 | 25 | 395 | 0.0 | 638 |
MS.gene012611.t1 | MTR_3g049400 | 78.261 | 368 | 66 | 5 | 36 | 392 | 37 | 401 | 0.0 | 556 |
MS.gene012611.t1 | MTR_2g029180 | 51.613 | 341 | 150 | 8 | 62 | 389 | 54 | 392 | 1.75e-98 | 299 |
MS.gene012611.t1 | MTR_4g088350 | 44.781 | 297 | 155 | 4 | 99 | 391 | 97 | 388 | 6.49e-81 | 254 |
MS.gene012611.t1 | MTR_5g044220 | 41.159 | 328 | 174 | 5 | 75 | 391 | 74 | 393 | 8.29e-78 | 246 |
MS.gene012611.t1 | MTR_6g005480 | 46.774 | 310 | 154 | 5 | 92 | 392 | 101 | 408 | 1.18e-75 | 241 |
MS.gene012611.t1 | MTR_4g105630 | 41.946 | 298 | 170 | 2 | 97 | 392 | 81 | 377 | 6.67e-72 | 230 |
MS.gene012611.t1 | MTR_4g105630 | 40.893 | 291 | 169 | 2 | 97 | 385 | 81 | 370 | 4.77e-67 | 217 |
MS.gene012611.t1 | MTR_3g077640 | 41.049 | 324 | 181 | 4 | 78 | 392 | 80 | 402 | 7.77e-67 | 218 |
MS.gene012611.t1 | MTR_4g088350 | 42.910 | 268 | 144 | 4 | 128 | 391 | 15 | 277 | 6.97e-66 | 211 |
MS.gene012611.t1 | MTR_4g105630 | 38.174 | 241 | 146 | 2 | 97 | 335 | 81 | 320 | 4.47e-46 | 162 |
MS.gene012611.t1 | MTR_4g105630 | 40.000 | 215 | 127 | 1 | 97 | 309 | 81 | 295 | 7.28e-44 | 155 |
MS.gene012611.t1 | MTR_1g030320 | 26.557 | 305 | 185 | 7 | 108 | 392 | 21 | 306 | 6.86e-24 | 101 |
MS.gene012611.t1 | MTR_3g072380 | 26.230 | 305 | 186 | 7 | 108 | 392 | 22 | 307 | 3.79e-23 | 99.4 |
MS.gene012611.t1 | MTR_3g072380 | 30.357 | 168 | 107 | 3 | 108 | 268 | 22 | 186 | 5.66e-17 | 80.1 |
MS.gene012611.t1 | MTR_3g070000 | 22.531 | 324 | 228 | 11 | 84 | 392 | 4 | 319 | 1.12e-16 | 80.5 |
MS.gene012611.t1 | MTR_5g081710 | 22.727 | 308 | 224 | 9 | 93 | 392 | 2 | 303 | 4.32e-15 | 75.9 |
MS.gene012611.t1 | MTR_3g462070 | 21.918 | 292 | 217 | 6 | 108 | 392 | 17 | 304 | 1.43e-14 | 74.3 |
MS.gene012611.t1 | MTR_4g018760 | 22.526 | 293 | 216 | 6 | 107 | 392 | 19 | 307 | 2.69e-13 | 70.5 |
MS.gene012611.t1 | MTR_4g101860 | 21.839 | 348 | 241 | 8 | 67 | 392 | 9 | 347 | 4.54e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene012611.t1 | AT1G61800 | 82.500 | 360 | 50 | 2 | 38 | 392 | 37 | 388 | 0.0 | 591 |
MS.gene012611.t1 | AT1G61800 | 81.667 | 360 | 53 | 2 | 38 | 392 | 37 | 388 | 0.0 | 585 |
MS.gene012611.t1 | AT5G54800 | 79.539 | 347 | 60 | 2 | 49 | 391 | 48 | 387 | 0.0 | 543 |
MS.gene012611.t1 | AT5G17630 | 50.136 | 367 | 167 | 9 | 34 | 390 | 42 | 402 | 2.50e-112 | 335 |
MS.gene012611.t1 | AT4G03950 | 56.997 | 293 | 69 | 6 | 101 | 392 | 18 | 254 | 2.64e-92 | 279 |
MS.gene012611.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 1.05e-80 | 254 |
MS.gene012611.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 1.24e-80 | 253 |
MS.gene012611.t1 | AT5G46110 | 44.444 | 288 | 151 | 4 | 108 | 391 | 2 | 284 | 1.27e-79 | 247 |
MS.gene012611.t1 | AT5G46110 | 37.127 | 369 | 197 | 7 | 33 | 391 | 43 | 386 | 1.21e-75 | 240 |
MS.gene012611.t1 | AT3G01550 | 42.345 | 307 | 174 | 2 | 89 | 392 | 67 | 373 | 1.74e-68 | 221 |
MS.gene012611.t1 | AT3G01550 | 41.368 | 307 | 172 | 3 | 89 | 392 | 67 | 368 | 1.56e-64 | 211 |
MS.gene012611.t1 | AT5G33320 | 38.650 | 326 | 191 | 3 | 74 | 391 | 75 | 399 | 6.35e-63 | 207 |
MS.gene012611.t1 | AT1G77610 | 25.503 | 298 | 197 | 5 | 108 | 392 | 16 | 301 | 2.56e-23 | 100 |
MS.gene012611.t1 | AT1G21870 | 25.503 | 298 | 197 | 6 | 108 | 392 | 22 | 307 | 8.98e-23 | 98.6 |
MS.gene012611.t1 | AT5G05820 | 24.000 | 300 | 214 | 9 | 101 | 392 | 12 | 305 | 5.72e-18 | 84.3 |
MS.gene012611.t1 | AT3G11320 | 23.333 | 300 | 216 | 9 | 101 | 392 | 12 | 305 | 3.00e-16 | 79.3 |
MS.gene012611.t1 | AT1G12500 | 23.729 | 295 | 212 | 7 | 106 | 392 | 64 | 353 | 4.61e-14 | 73.2 |
Find 98 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTATATGTTTCAGGGTTTA+TGG | 0.101964 | 8.1:-2162092 | MS.gene012611:intron |
CTTTCATTGCTGCCAATTAT+TGG | 0.180449 | 8.1:-2162426 | MS.gene012611:CDS |
TTAAGCTTACCATACAAAAT+TGG | 0.184444 | 8.1:+2161868 | None:intergenic |
GAGAAGCAGTAGAGATAATA+TGG | 0.194779 | 8.1:+2161967 | None:intergenic |
CAGCCAGCAGCCCACATCTT+TGG | 0.196761 | 8.1:+2161917 | None:intergenic |
TTCCCTATGCTAAATGTTAA+TGG | 0.247165 | 8.1:+2161214 | None:intergenic |
TGAGGCCCCTAAAGTTAATT+TGG | 0.255186 | 8.1:-2163331 | MS.gene012611:CDS |
CCAATGTGGCCTTTGTGTTT+AGG | 0.259810 | 8.1:-2162057 | MS.gene012611:CDS |
AGCCAGCAGCCCACATCTTT+GGG | 0.269548 | 8.1:+2161918 | None:intergenic |
AGTTTCCCTCCTTGTGAGTT+TGG | 0.275392 | 8.1:+2163599 | None:intergenic |
GCAGCTCAGAAACTCAAAAT+TGG | 0.310246 | 8.1:-2163507 | MS.gene012611:CDS |
AGGGCATTGTTTGGCTGAAT+TGG | 0.315373 | 8.1:+2161139 | None:intergenic |
CTTTCCAACAGGGTGAATAA+TGG | 0.322181 | 8.1:+2163698 | None:intergenic |
GTATATGTTTCAGGGTTTAT+GGG | 0.323201 | 8.1:-2162091 | MS.gene012611:intron |
CTAAAATACACATTACTGTT+TGG | 0.328456 | 8.1:+2160897 | None:intergenic |
AGTGCACAACCTCCAATAAT+TGG | 0.333090 | 8.1:+2162414 | None:intergenic |
TGTTAATCTCATGGGCTACT+AGG | 0.338741 | 8.1:-2163359 | MS.gene012611:CDS |
TTATTTGTGTTCTTTCCAAC+AGG | 0.349705 | 8.1:+2163687 | None:intergenic |
GAACTTAATTTCAATATGAT+TGG | 0.357019 | 8.1:-2162378 | MS.gene012611:intron |
TGTAAATGAAACTGCAACTT+TGG | 0.364668 | 8.1:+2162533 | None:intergenic |
TTTCCAACAGGGTGAATAAT+GGG | 0.368520 | 8.1:+2163699 | None:intergenic |
CTGTGACCTATCTGCTTCAT+AGG | 0.377418 | 8.1:+2163566 | None:intergenic |
TCCACTTTGTCCCTTGCTGC+TGG | 0.380408 | 8.1:-2163393 | MS.gene012611:CDS |
TAAGCTTACCATACAAAATT+GGG | 0.391221 | 8.1:+2161869 | None:intergenic |
GTTGCAGTGGCACATACAAT+TGG | 0.392389 | 8.1:-2162582 | MS.gene012611:CDS |
TTCTGAGCTGCTTGTTCACC+TGG | 0.392509 | 8.1:+2163519 | None:intergenic |
GGTGCTGCCATTGCAATCCT+TGG | 0.398279 | 8.1:-2161115 | MS.gene012611:CDS |
CTCTCATCATGTTAATCTCA+TGG | 0.398591 | 8.1:-2163368 | MS.gene012611:CDS |
TCATTACCCTTTACCAACTT+TGG | 0.400604 | 8.1:-2163762 | MS.gene012611:CDS |
GGCCCAAAGATGTGGGCTGC+TGG | 0.405747 | 8.1:-2161920 | MS.gene012611:CDS |
TAGGAATATATTCTCAAAGA+AGG | 0.412057 | 8.1:-2162038 | MS.gene012611:CDS |
CAAAGATGTGGGCTGCTGGC+TGG | 0.414219 | 8.1:-2161916 | MS.gene012611:CDS |
ATGGGTAATGTGCATAGTTT+AGG | 0.414988 | 8.1:+2163717 | None:intergenic |
CTCCATTAACATTTAGCATA+GGG | 0.419291 | 8.1:-2161216 | MS.gene012611:CDS |
GATGAACCAAAGTTGGTAAA+GGG | 0.421343 | 8.1:+2163756 | None:intergenic |
GCAGCACCAAGGGCATTGTT+TGG | 0.422130 | 8.1:+2161130 | None:intergenic |
TACAAAATTGGGACCAATCT+GGG | 0.424232 | 8.1:+2161880 | None:intergenic |
ATACAAAATTGGGACCAATC+TGG | 0.428493 | 8.1:+2161879 | None:intergenic |
CCTTCCACAGCAATAGCAAA+AGG | 0.450440 | 8.1:+2161941 | None:intergenic |
AATGTGCATAGTTTAGGCCT+TGG | 0.452348 | 8.1:+2163723 | None:intergenic |
ATGAAAGGTAAACTTGTAAA+GGG | 0.453481 | 8.1:+2162442 | None:intergenic |
AATGAAAGGTAAACTTGTAA+AGG | 0.460416 | 8.1:+2162441 | None:intergenic |
TGATGAACCAAAGTTGGTAA+AGG | 0.462222 | 8.1:+2163755 | None:intergenic |
AAAGTTTGATGAACCAAAGT+TGG | 0.464102 | 8.1:+2163749 | None:intergenic |
TCATTGCTGCCAATTATTGG+AGG | 0.465645 | 8.1:-2162423 | MS.gene012611:CDS |
TATATGTTTCAGGGTTTATG+GGG | 0.470350 | 8.1:-2162090 | MS.gene012611:intron |
TTACCCATTATTCACCCTGT+TGG | 0.474011 | 8.1:-2163702 | MS.gene012611:CDS |
TTTACACACATAATCAAAAG+TGG | 0.474109 | 8.1:-2162516 | MS.gene012611:CDS |
AGCAGATAGGTCACAGCCAT+TGG | 0.485312 | 8.1:-2163559 | MS.gene012611:CDS |
TTTCAATATTTACAACAAGA+AGG | 0.489567 | 8.1:-2163448 | MS.gene012611:CDS |
GTTAATCTCATGGGCTACTA+GGG | 0.492852 | 8.1:-2163358 | MS.gene012611:CDS |
GTGGAAGTAAGCCAAGGATA+AGG | 0.497515 | 8.1:+2163411 | None:intergenic |
TGGCACCTTCCTCTATTCAC+AGG | 0.498982 | 8.1:-2161095 | MS.gene012611:intron |
ATGAAAGGAATGTCTGTTAG+TGG | 0.500986 | 8.1:-2162013 | MS.gene012611:CDS |
TTGCAGTGGCACATACAATT+GGG | 0.501192 | 8.1:-2162581 | MS.gene012611:CDS |
GTTCATCAAACTTTATTCCA+AGG | 0.503318 | 8.1:-2163740 | MS.gene012611:CDS |
TCTCCATTAACATTTAGCAT+AGG | 0.504196 | 8.1:-2161217 | MS.gene012611:CDS |
GGGAATGGACCTGTGAATAG+AGG | 0.507084 | 8.1:+2161086 | None:intergenic |
CTTCCACAGCAATAGCAAAA+GGG | 0.507964 | 8.1:+2161942 | None:intergenic |
TCAGTGGATGATATGTAAAG+AGG | 0.515667 | 8.1:+2163642 | None:intergenic |
GAGCTGCTTGTTCACCTGGT+AGG | 0.516916 | 8.1:+2163523 | None:intergenic |
CAAACAGCAGTGTCCCAGAT+TGG | 0.535343 | 8.1:-2161893 | MS.gene012611:CDS |
TTCTCAAAGAAGGGAATGAA+AGG | 0.535780 | 8.1:-2162028 | MS.gene012611:CDS |
ACCAGCAGCAAGGGACAAAG+TGG | 0.537499 | 8.1:+2163392 | None:intergenic |
AGGAATATATTCTCAAAGAA+GGG | 0.541673 | 8.1:-2162037 | MS.gene012611:CDS |
CCTAAACACAAAGGCCACAT+TGG | 0.548843 | 8.1:+2162057 | None:intergenic |
CAATAATTGGCAGCAATGAA+AGG | 0.550796 | 8.1:+2162427 | None:intergenic |
ATTCAGCCAAACAATGCCCT+TGG | 0.558227 | 8.1:-2161136 | MS.gene012611:CDS |
TCTCATCATGTTAATCTCAT+GGG | 0.562801 | 8.1:-2163367 | MS.gene012611:CDS |
GTTTGAGAGAAGACAAAGAG+AGG | 0.565693 | 8.1:+2163664 | None:intergenic |
AAAATCCAAATTAACTTTAG+GGG | 0.568648 | 8.1:+2163326 | None:intergenic |
GATGAGAGAACCAGCAGCAA+GGG | 0.572112 | 8.1:+2163383 | None:intergenic |
ATTTAAACTGCAGGTTGCAG+TGG | 0.576270 | 8.1:-2162595 | MS.gene012611:intron |
ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 8.1:-2163349 | MS.gene012611:CDS |
AGGTCAATATTAATCTCCAA+TGG | 0.584548 | 8.1:+2163543 | None:intergenic |
AACATGGTGGGCTTTGAATG+TGG | 0.587072 | 8.1:-2163472 | MS.gene012611:CDS |
GATTGCAATGGCAGCACCAA+GGG | 0.590233 | 8.1:+2161120 | None:intergenic |
GATACAAGAACACTGAAAGC+AGG | 0.598642 | 8.1:+2162489 | None:intergenic |
TTGCATGCTTACAGGAAACA+AGG | 0.604931 | 8.1:+2163296 | None:intergenic |
CTGTGGAAGGCCCAAAGATG+TGG | 0.607847 | 8.1:-2161928 | MS.gene012611:CDS |
GTGAATAGAGGAAGGTGCCA+AGG | 0.609003 | 8.1:+2161098 | None:intergenic |
TTCCACAGCAATAGCAAAAG+GGG | 0.609710 | 8.1:+2161943 | None:intergenic |
GTCATGCCTATGAAGCAGAT+AGG | 0.618296 | 8.1:-2163572 | MS.gene012611:CDS |
AACAACCAAACTCACAAGGA+GGG | 0.622699 | 8.1:-2163604 | MS.gene012611:CDS |
GAATACGATGAAGAGAATCT+CGG | 0.623011 | 8.1:-2161194 | MS.gene012611:CDS |
ATATGTTTCAGGGTTTATGG+GGG | 0.623221 | 8.1:-2162089 | MS.gene012611:intron |
TGATGAGAGAACCAGCAGCA+AGG | 0.629327 | 8.1:+2163382 | None:intergenic |
GACAAAGTGGAAGTAAGCCA+AGG | 0.631812 | 8.1:+2163405 | None:intergenic |
GAAGGTGCCAAGGATTGCAA+TGG | 0.634289 | 8.1:+2161108 | None:intergenic |
ATGGACCTGTGAATAGAGGA+AGG | 0.642169 | 8.1:+2161090 | None:intergenic |
GAGATTAATATTGACCTACC+AGG | 0.648457 | 8.1:-2163537 | MS.gene012611:CDS |
GGATTGCAATGGCAGCACCA+AGG | 0.661338 | 8.1:+2161119 | None:intergenic |
TATTTGTGTTCTTTCCAACA+GGG | 0.663249 | 8.1:+2163688 | None:intergenic |
GCAGTAGAGATAATATGGAG+AGG | 0.668394 | 8.1:+2161972 | None:intergenic |
TGTGGAAGGCCCAAAGATGT+GGG | 0.679025 | 8.1:-2161927 | MS.gene012611:CDS |
GAATATATTCCTAAACACAA+AGG | 0.680902 | 8.1:+2162048 | None:intergenic |
CAACAACCAAACTCACAAGG+AGG | 0.683879 | 8.1:-2163605 | MS.gene012611:CDS |
TCTCAACAACCAAACTCACA+AGG | 0.695316 | 8.1:-2163608 | MS.gene012611:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAATCCAAATTAACTTTA+GGG | + | chr8.1:2161376-2161395 | None:intergenic | 15.0% |
!! | AAGCAATAAAATTAAGAAAA+AGG | + | chr8.1:2161441-2161460 | None:intergenic | 15.0% |
!! | ACATGTATATATAAAATGAA+CGG | + | chr8.1:2163692-2163711 | None:intergenic | 15.0% |
!!! | AAAATTGATTTTGAATGAAT+TGG | - | chr8.1:2161550-2161569 | MS.gene012611:intron | 15.0% |
!!! | TACATAAAAACTTTTATGAT+TGG | + | chr8.1:2162961-2162980 | None:intergenic | 15.0% |
!!! | TTTCTTTTTATTTATTTCAC+AGG | - | chr8.1:2163778-2163797 | MS.gene012611:CDS | 15.0% |
!! | AAAATCCAAATTAACTTTAG+GGG | + | chr8.1:2161375-2161394 | None:intergenic | 20.0% |
!! | AATAAGAAAGCAAAAATAGA+AGG | + | chr8.1:2163641-2163660 | None:intergenic | 20.0% |
!! | ACTATATTCACTTATTTACA+TGG | - | chr8.1:2162347-2162366 | MS.gene012611:intron | 20.0% |
!! | CAAAAATCCAAATTAACTTT+AGG | + | chr8.1:2161377-2161396 | None:intergenic | 20.0% |
!! | GAACTTAATTTCAATATGAT+TGG | - | chr8.1:2162320-2162339 | MS.gene012611:intron | 20.0% |
!! | TTTCAATATTTACAACAAGA+AGG | - | chr8.1:2161250-2161269 | MS.gene012611:CDS | 20.0% |
!!! | AATATTGATTTAGTACTGAA+TGG | - | chr8.1:2162077-2162096 | MS.gene012611:CDS | 20.0% |
!!! | ATATTGATTTAGTACTGAAT+GGG | - | chr8.1:2162078-2162097 | MS.gene012611:CDS | 20.0% |
!!! | CTAAAGTTAATTTGGATTTT+TGG | - | chr8.1:2161375-2161394 | MS.gene012611:intron | 20.0% |
!!! | GTTTTAATATAGTCTATGTT+TGG | + | chr8.1:2161901-2161920 | None:intergenic | 20.0% |
! | AAAAGACCTTAGAGATATAA+TGG | + | chr8.1:2162898-2162917 | None:intergenic | 25.0% |
! | AAAGCAAAAATAGAAGGAAA+GGG | + | chr8.1:2163635-2163654 | None:intergenic | 25.0% |
! | AATGAAAGGTAAACTTGTAA+AGG | + | chr8.1:2162260-2162279 | None:intergenic | 25.0% |
! | AGGAATATATTCTCAAAGAA+GGG | - | chr8.1:2162661-2162680 | MS.gene012611:intron | 25.0% |
! | ATATGTCTTGTATATGTTTC+AGG | - | chr8.1:2162598-2162617 | MS.gene012611:intron | 25.0% |
! | ATGAAAGGTAAACTTGTAAA+GGG | + | chr8.1:2162259-2162278 | None:intergenic | 25.0% |
! | ATGAAATAGTACACAACAAT+GGG | + | chr8.1:2162873-2162892 | None:intergenic | 25.0% |
! | ATGTTCTGTTTATAGTAGAT+TGG | - | chr8.1:2162390-2162409 | MS.gene012611:CDS | 25.0% |
! | ATTATCAATATTCATGGTCA+AGG | + | chr8.1:2163291-2163310 | None:intergenic | 25.0% |
! | CATTTGACTAATGAACTTAT+GGG | - | chr8.1:2163373-2163392 | MS.gene012611:CDS | 25.0% |
! | GAATATATTCCTAAACACAA+AGG | + | chr8.1:2162653-2162672 | None:intergenic | 25.0% |
! | TAAAAAGACTGTAAAACAGT+TGG | + | chr8.1:2163175-2163194 | None:intergenic | 25.0% |
! | TAAGCTTACCATACAAAATT+GGG | + | chr8.1:2162832-2162851 | None:intergenic | 25.0% |
! | TAGGAATATATTCTCAAAGA+AGG | - | chr8.1:2162660-2162679 | MS.gene012611:intron | 25.0% |
! | TAGGCTGAAAAATAAATTTG+AGG | - | chr8.1:2161600-2161619 | MS.gene012611:intron | 25.0% |
! | TATGAAATAGTACACAACAA+TGG | + | chr8.1:2162874-2162893 | None:intergenic | 25.0% |
! | TATGTCTTGTATATGTTTCA+GGG | - | chr8.1:2162599-2162618 | MS.gene012611:intron | 25.0% |
! | TATTCACTTATTTACATGGT+TGG | - | chr8.1:2162351-2162370 | MS.gene012611:intron | 25.0% |
! | TCATATCCATTATATCTCTA+AGG | - | chr8.1:2162889-2162908 | MS.gene012611:intron | 25.0% |
! | TCATTTGACTAATGAACTTA+TGG | - | chr8.1:2163372-2163391 | MS.gene012611:CDS | 25.0% |
! | TGAATTGAATGATCAATTTG+AGG | + | chr8.1:2161955-2161974 | None:intergenic | 25.0% |
! | TGTTCTGTTTATAGTAGATT+GGG | - | chr8.1:2162391-2162410 | MS.gene012611:CDS | 25.0% |
! | TTAAGCTTACCATACAAAAT+TGG | + | chr8.1:2162833-2162852 | None:intergenic | 25.0% |
! | TTCAAGATATAGAAGATCTA+CGG | - | chr8.1:2161731-2161750 | MS.gene012611:intron | 25.0% |
! | TTTACACACATAATCAAAAG+TGG | - | chr8.1:2162182-2162201 | MS.gene012611:intron | 25.0% |
!! | TAATTTTATTGTTGACACAC+AGG | + | chr8.1:2163722-2163741 | None:intergenic | 25.0% |
!!! | AGAAGCATTATCAATATTCA+TGG | + | chr8.1:2163297-2163316 | None:intergenic | 25.0% |
!!! | AGTTAATTTGGATTTTTGGA+AGG | - | chr8.1:2161379-2161398 | MS.gene012611:intron | 25.0% |
!!! | ATTGATAATGCTTCTTCAAA+AGG | - | chr8.1:2163302-2163321 | MS.gene012611:intron | 25.0% |
!!! | TATTGATTTAGTACTGAATG+GGG | - | chr8.1:2162079-2162098 | MS.gene012611:CDS | 25.0% |
!!! | TTATGGGTAGTAATTTTTTC+AGG | - | chr8.1:2163389-2163408 | MS.gene012611:CDS | 25.0% |
!!! | TTATTTACATGGTTGGTTTT+CGG | - | chr8.1:2162358-2162377 | MS.gene012611:intron | 25.0% |
!!! | TTGATAATGCTTCTTCAAAA+GGG | - | chr8.1:2163303-2163322 | MS.gene012611:intron | 25.0% |
AAAAATAGAAGGAAAGGGAA+TGG | + | chr8.1:2163630-2163649 | None:intergenic | 30.0% | |
AAAGTTTGATGAACCAAAGT+TGG | + | chr8.1:2160952-2160971 | None:intergenic | 30.0% | |
ACACATGTATCTTCTAATTG+TGG | - | chr8.1:2161827-2161846 | MS.gene012611:intron | 30.0% | |
AGGTCAATATTAATCTCCAA+TGG | + | chr8.1:2161158-2161177 | None:intergenic | 30.0% | |
ATATATGTCAGTGTCTATGT+CGG | + | chr8.1:2162478-2162497 | None:intergenic | 30.0% | |
CGGACATAAAAAATAGTGAA+TGG | + | chr8.1:2163672-2163691 | None:intergenic | 30.0% | |
CTCCATTAACATTTAGCATA+GGG | - | chr8.1:2163482-2163501 | MS.gene012611:CDS | 30.0% | |
GAAAGCAAAAATAGAAGGAA+AGG | + | chr8.1:2163636-2163655 | None:intergenic | 30.0% | |
GTAGATCTTCTATATCTTGA+AGG | + | chr8.1:2161732-2161751 | None:intergenic | 30.0% | |
GTATATGTTTCAGGGTTTAT+GGG | - | chr8.1:2162607-2162626 | MS.gene012611:intron | 30.0% | |
GTTCATCAAACTTTATTCCA+AGG | - | chr8.1:2160958-2160977 | MS.gene012611:intron | 30.0% | |
TATATGTTTCAGGGTTTATG+GGG | - | chr8.1:2162608-2162627 | MS.gene012611:intron | 30.0% | |
TATTTGTGTTCTTTCCAACA+GGG | + | chr8.1:2161013-2161032 | None:intergenic | 30.0% | |
TCAAGATATAGAAGATCTAC+GGG | - | chr8.1:2161732-2161751 | MS.gene012611:intron | 30.0% | |
TCTCATCATGTTAATCTCAT+GGG | - | chr8.1:2161331-2161350 | MS.gene012611:intron | 30.0% | |
TCTCCATTAACATTTAGCAT+AGG | - | chr8.1:2163481-2163500 | MS.gene012611:CDS | 30.0% | |
TGTAAATGAAACTGCAACTT+TGG | + | chr8.1:2162168-2162187 | None:intergenic | 30.0% | |
TGTATATGTTTCAGGGTTTA+TGG | - | chr8.1:2162606-2162625 | MS.gene012611:intron | 30.0% | |
TTATTTGTGTTCTTTCCAAC+AGG | + | chr8.1:2161014-2161033 | None:intergenic | 30.0% | |
TTCCCTATGCTAAATGTTAA+TGG | + | chr8.1:2163487-2163506 | None:intergenic | 30.0% | |
TTTCTATAAGCTCTCTCATA+GGG | - | chr8.1:2163111-2163130 | MS.gene012611:intron | 30.0% | |
! | CTTGTATCAAGATTTTTGCT+TGG | - | chr8.1:2162224-2162243 | MS.gene012611:intron | 30.0% |
! | GATTGATTCTAGCTAAAAGT+AGG | - | chr8.1:2161581-2161600 | MS.gene012611:intron | 30.0% |
! | TTAGAGTTTGTTCTGTTCTA+CGG | + | chr8.1:2162035-2162054 | None:intergenic | 30.0% |
! | TTTGTATTTTGCAACATGGT+GGG | - | chr8.1:2161214-2161233 | MS.gene012611:CDS | 30.0% |
!! | TAGTAGATTGGGTTGATAAT+AGG | - | chr8.1:2162402-2162421 | MS.gene012611:CDS | 30.0% |
!!! | ATATCTCTAAGGTCTTTTTG+TGG | - | chr8.1:2162900-2162919 | MS.gene012611:intron | 30.0% |
!!! | TTGGTTTGTATTTTGCAACA+TGG | - | chr8.1:2161210-2161229 | MS.gene012611:CDS | 30.0% |
AAAAGAGTTTGCATGCTTAC+AGG | + | chr8.1:2161413-2161432 | None:intergenic | 35.0% | |
ACACTAACACTTCCAATTGA+AGG | - | chr8.1:2162440-2162459 | MS.gene012611:CDS | 35.0% | |
ACTGTAAAACAGTTGGACTA+AGG | + | chr8.1:2163168-2163187 | None:intergenic | 35.0% | |
AGATTCTTGCTTTCGAAGTA+CGG | - | chr8.1:2162054-2162073 | MS.gene012611:CDS | 35.0% | |
ATACAAAATTGGGACCAATC+TGG | + | chr8.1:2162822-2162841 | None:intergenic | 35.0% | |
ATACCTAACACACCTTCAAT+TGG | + | chr8.1:2162455-2162474 | None:intergenic | 35.0% | |
ATATGTTTCAGGGTTTATGG+GGG | - | chr8.1:2162609-2162628 | MS.gene012611:intron | 35.0% | |
ATGAAAGGAATGTCTGTTAG+TGG | - | chr8.1:2162685-2162704 | MS.gene012611:intron | 35.0% | |
ATGCTATCCTAAAGAGCTTA+TGG | - | chr8.1:2163049-2163068 | MS.gene012611:intron | 35.0% | |
ATGGGTAATGTGCATAGTTT+AGG | + | chr8.1:2160984-2161003 | None:intergenic | 35.0% | |
CAATAATTGGCAGCAATGAA+AGG | + | chr8.1:2162274-2162293 | None:intergenic | 35.0% | |
CTCATATCCATAAGCTCTTT+AGG | + | chr8.1:2163059-2163078 | None:intergenic | 35.0% | |
CTCTCATCATGTTAATCTCA+TGG | - | chr8.1:2161330-2161349 | MS.gene012611:intron | 35.0% | |
CTGTAAAACAGTTGGACTAA+GGG | + | chr8.1:2163167-2163186 | None:intergenic | 35.0% | |
CTTTCATTGCTGCCAATTAT+TGG | - | chr8.1:2162272-2162291 | MS.gene012611:intron | 35.0% | |
GAATACGATGAAGAGAATCT+CGG | - | chr8.1:2163504-2163523 | MS.gene012611:CDS | 35.0% | |
GAGAAGCAGTAGAGATAATA+TGG | + | chr8.1:2162734-2162753 | None:intergenic | 35.0% | |
GAGATTAATATTGACCTACC+AGG | - | chr8.1:2161161-2161180 | MS.gene012611:CDS | 35.0% | |
GTTTCTATAAGCTCTCTCAT+AGG | - | chr8.1:2163110-2163129 | MS.gene012611:intron | 35.0% | |
TACAAAATTGGGACCAATCT+GGG | + | chr8.1:2162821-2162840 | None:intergenic | 35.0% | |
TCAGTGGATGATATGTAAAG+AGG | + | chr8.1:2161059-2161078 | None:intergenic | 35.0% | |
TCATTACCCTTTACCAACTT+TGG | - | chr8.1:2160936-2160955 | MS.gene012611:intron | 35.0% | |
TTAGTCTCTGACTTTCTACT+GGG | + | chr8.1:2161708-2161727 | None:intergenic | 35.0% | |
TTCTCAAAGAAGGGAATGAA+AGG | - | chr8.1:2162670-2162689 | MS.gene012611:intron | 35.0% | |
TTTCCAACAGGGTGAATAAT+GGG | + | chr8.1:2161002-2161021 | None:intergenic | 35.0% | |
! | ATTAGTCTCTGACTTTCTAC+TGG | + | chr8.1:2161709-2161728 | None:intergenic | 35.0% |
! | GTTTGTATTTTGCAACATGG+TGG | - | chr8.1:2161213-2161232 | MS.gene012611:CDS | 35.0% |
! | TAGAGTTTGTTCTGTTCTAC+GGG | + | chr8.1:2162034-2162053 | None:intergenic | 35.0% |
! | TGAATGCTTTTCCTTATCCT+TGG | - | chr8.1:2161276-2161295 | MS.gene012611:CDS | 35.0% |
! | TGAGAAACTGAAGTTTTCAG+TGG | + | chr8.1:2161075-2161094 | None:intergenic | 35.0% |
! | TGTAAGCATGCAAACTCTTT+TGG | - | chr8.1:2161412-2161431 | MS.gene012611:intron | 35.0% |
!! | AGATTGGTCCCAATTTTGTA+TGG | - | chr8.1:2162821-2162840 | MS.gene012611:intron | 35.0% |
!! | GATGAACCAAAGTTGGTAAA+GGG | + | chr8.1:2160945-2160964 | None:intergenic | 35.0% |
!! | TGATGAACCAAAGTTGGTAA+AGG | + | chr8.1:2160946-2160965 | None:intergenic | 35.0% |
!!! | GGGTAGTAATTTTTTCAGGT+GGG | - | chr8.1:2163393-2163412 | MS.gene012611:CDS | 35.0% |
!!! | TGGGTAGTAATTTTTTCAGG+TGG | - | chr8.1:2163392-2163411 | MS.gene012611:CDS | 35.0% |
AACAACCAAACTCACAAGGA+GGG | - | chr8.1:2161094-2161113 | MS.gene012611:intron | 40.0% | |
AACCATGACCACATGCTTAA+GGG | - | chr8.1:2161804-2161823 | MS.gene012611:intron | 40.0% | |
AATGTGCATAGTTTAGGCCT+TGG | + | chr8.1:2160978-2160997 | None:intergenic | 40.0% | |
AGTGCACAACCTCCAATAAT+TGG | + | chr8.1:2162287-2162306 | None:intergenic | 40.0% | |
ATACTAGTGTGTGGAGATCA+TGG | - | chr8.1:2163231-2163250 | MS.gene012611:intron | 40.0% | |
ATGATCTCCACACACTAGTA+TGG | + | chr8.1:2163232-2163251 | None:intergenic | 40.0% | |
ATTTAAACTGCAGGTTGCAG+TGG | - | chr8.1:2162103-2162122 | MS.gene012611:intron | 40.0% | |
CTAATTGTGGCACACTATGT+TGG | - | chr8.1:2161840-2161859 | MS.gene012611:intron | 40.0% | |
CTTCCACAGCAATAGCAAAA+GGG | + | chr8.1:2162759-2162778 | None:intergenic | 40.0% | |
CTTTCCAACAGGGTGAATAA+TGG | + | chr8.1:2161003-2161022 | None:intergenic | 40.0% | |
GAATGGGGAATTTAAACTGC+AGG | - | chr8.1:2162094-2162113 | MS.gene012611:intron | 40.0% | |
GATACAAGAACACTGAAAGC+AGG | + | chr8.1:2162212-2162231 | None:intergenic | 40.0% | |
GCAGCTCAGAAACTCAAAAT+TGG | - | chr8.1:2161191-2161210 | MS.gene012611:CDS | 40.0% | |
GCAGTAGAGATAATATGGAG+AGG | + | chr8.1:2162729-2162748 | None:intergenic | 40.0% | |
GTTTGAGAGAAGACAAAGAG+AGG | + | chr8.1:2161037-2161056 | None:intergenic | 40.0% | |
GTTTGGCTACAATTTCGAAG+AGG | + | chr8.1:2161884-2161903 | None:intergenic | 40.0% | |
TCATTGCTGCCAATTATTGG+AGG | - | chr8.1:2162275-2162294 | MS.gene012611:intron | 40.0% | |
TCTCAACAACCAAACTCACA+AGG | - | chr8.1:2161090-2161109 | MS.gene012611:intron | 40.0% | |
TGAGGCCCCTAAAGTTAATT+TGG | - | chr8.1:2161367-2161386 | MS.gene012611:intron | 40.0% | |
TGCTTCTTCAAAAGGGTCTA+TGG | - | chr8.1:2163310-2163329 | MS.gene012611:CDS | 40.0% | |
TTACCCATTATTCACCCTGT+TGG | - | chr8.1:2160996-2161015 | MS.gene012611:intron | 40.0% | |
TTCCACAGCAATAGCAAAAG+GGG | + | chr8.1:2162758-2162777 | None:intergenic | 40.0% | |
TTGCAGTGGCACATACAATT+GGG | - | chr8.1:2162117-2162136 | MS.gene012611:intron | 40.0% | |
TTGCATGCTTACAGGAAACA+AGG | + | chr8.1:2161405-2161424 | None:intergenic | 40.0% | |
! | AGAGTTTGTTCTGTTCTACG+GGG | + | chr8.1:2162033-2162052 | None:intergenic | 40.0% |
! | CTTCCAATTGAAGGTGTGTT+AGG | - | chr8.1:2162449-2162468 | MS.gene012611:CDS | 40.0% |
! | GGTAGAGCACTTGTTAAAAG+AGG | + | chr8.1:2161764-2161783 | None:intergenic | 40.0% |
! | GTTAATCTCATGGGCTACTA+GGG | - | chr8.1:2161340-2161359 | MS.gene012611:intron | 40.0% |
! | TGTTAATCTCATGGGCTACT+AGG | - | chr8.1:2161339-2161358 | MS.gene012611:intron | 40.0% |
ACATGTGTCCCTTAAGCATG+TGG | + | chr8.1:2161815-2161834 | None:intergenic | 45.0% | |
AGGGTCTAACAAATGCACTG+TGG | - | chr8.1:2163130-2163149 | MS.gene012611:intron | 45.0% | |
AGTTGGACTAAGGGTCTGTT+TGG | + | chr8.1:2163158-2163177 | None:intergenic | 45.0% | |
AGTTTCCCTCCTTGTGAGTT+TGG | + | chr8.1:2161102-2161121 | None:intergenic | 45.0% | |
ATGGACCTGTGAATAGAGGA+AGG | + | chr8.1:2163611-2163630 | None:intergenic | 45.0% | |
ATTCAGCCAAACAATGCCCT+TGG | - | chr8.1:2163562-2163581 | MS.gene012611:CDS | 45.0% | |
CAACAACCAAACTCACAAGG+AGG | - | chr8.1:2161093-2161112 | MS.gene012611:intron | 45.0% | |
CCAATGTGGCCTTTGTGTTT+AGG | - | chr8.1:2162641-2162660 | MS.gene012611:intron | 45.0% | |
CCTAAACACAAAGGCCACAT+TGG | + | chr8.1:2162644-2162663 | None:intergenic | 45.0% | |
CCTTCCACAGCAATAGCAAA+AGG | + | chr8.1:2162760-2162779 | None:intergenic | 45.0% | |
CTGTGACCTATCTGCTTCAT+AGG | + | chr8.1:2161135-2161154 | None:intergenic | 45.0% | |
GAACCATGACCACATGCTTA+AGG | - | chr8.1:2161803-2161822 | MS.gene012611:intron | 45.0% | |
GACAAAGTGGAAGTAAGCCA+AGG | + | chr8.1:2161296-2161315 | None:intergenic | 45.0% | |
GGGTCTAACAAATGCACTGT+GGG | - | chr8.1:2163131-2163150 | MS.gene012611:intron | 45.0% | |
GTCATGCCTATGAAGCAGAT+AGG | - | chr8.1:2161126-2161145 | MS.gene012611:CDS | 45.0% | |
GTGGAAGTAAGCCAAGGATA+AGG | + | chr8.1:2161290-2161309 | None:intergenic | 45.0% | |
GTTGCAGTGGCACATACAAT+TGG | - | chr8.1:2162116-2162135 | MS.gene012611:intron | 45.0% | |
TGACACTGATATGTCGACAC+TGG | + | chr8.1:2162537-2162556 | None:intergenic | 45.0% | |
!! | AACATGGTGGGCTTTGAATG+TGG | - | chr8.1:2161226-2161245 | MS.gene012611:CDS | 45.0% |
!! | AGGGCATTGTTTGGCTGAAT+TGG | + | chr8.1:2163562-2163581 | None:intergenic | 45.0% |
!!! | CCTTTTGCTATTGCTGTGGA+AGG | - | chr8.1:2162757-2162776 | MS.gene012611:intron | 45.0% |
AGCAGATAGGTCACAGCCAT+TGG | - | chr8.1:2161139-2161158 | MS.gene012611:CDS | 50.0% | |
CAAACAGCAGTGTCCCAGAT+TGG | - | chr8.1:2162805-2162824 | MS.gene012611:intron | 50.0% | |
GATGAGAGAACCAGCAGCAA+GGG | + | chr8.1:2161318-2161337 | None:intergenic | 50.0% | |
GATTGCAATGGCAGCACCAA+GGG | + | chr8.1:2163581-2163600 | None:intergenic | 50.0% | |
GCGCAAACCATACTAGTGTG+TGG | - | chr8.1:2163222-2163241 | MS.gene012611:intron | 50.0% | |
GGGAATGGACCTGTGAATAG+AGG | + | chr8.1:2163615-2163634 | None:intergenic | 50.0% | |
GGGGGCTATGATATCCAATG+TGG | - | chr8.1:2162627-2162646 | MS.gene012611:intron | 50.0% | |
GTCCCTTAAGCATGTGGTCA+TGG | + | chr8.1:2161809-2161828 | None:intergenic | 50.0% | |
TCGACGCTGACATGTGTGTA+TGG | + | chr8.1:2161785-2161804 | None:intergenic | 50.0% | |
TGATGAGAGAACCAGCAGCA+AGG | + | chr8.1:2161319-2161338 | None:intergenic | 50.0% | |
TGGCACCTTCCTCTATTCAC+AGG | - | chr8.1:2163603-2163622 | MS.gene012611:CDS | 50.0% | |
TGTGGAAGGCCCAAAGATGT+GGG | - | chr8.1:2162771-2162790 | MS.gene012611:intron | 50.0% | |
TTCTGAGCTGCTTGTTCACC+TGG | + | chr8.1:2161182-2161201 | None:intergenic | 50.0% | |
!! | GAAGGTGCCAAGGATTGCAA+TGG | + | chr8.1:2163593-2163612 | None:intergenic | 50.0% |
!! | GTGAATAGAGGAAGGTGCCA+AGG | + | chr8.1:2163603-2163622 | None:intergenic | 50.0% |
!!! | CACCCCTTTTGCTATTGCTG+TGG | - | chr8.1:2162753-2162772 | MS.gene012611:intron | 50.0% |
ACCAGCAGCAAGGGACAAAG+TGG | + | chr8.1:2161309-2161328 | None:intergenic | 55.0% | |
AGCCAGCAGCCCACATCTTT+GGG | + | chr8.1:2162783-2162802 | None:intergenic | 55.0% | |
CTGTGGAAGGCCCAAAGATG+TGG | - | chr8.1:2162770-2162789 | MS.gene012611:intron | 55.0% | |
GAGCTGCTTGTTCACCTGGT+AGG | + | chr8.1:2161178-2161197 | None:intergenic | 55.0% | |
GGATTGCAATGGCAGCACCA+AGG | + | chr8.1:2163582-2163601 | None:intergenic | 55.0% | |
TCCACTTTGTCCCTTGCTGC+TGG | - | chr8.1:2161305-2161324 | MS.gene012611:intron | 55.0% | |
! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr8.1:2161349-2161368 | MS.gene012611:intron | 55.0% |
! | GGTGCTGCCATTGCAATCCT+TGG | - | chr8.1:2163583-2163602 | MS.gene012611:CDS | 55.0% |
!! | GCAGCACCAAGGGCATTGTT+TGG | + | chr8.1:2163571-2163590 | None:intergenic | 55.0% |
CAGCCAGCAGCCCACATCTT+TGG | + | chr8.1:2162784-2162803 | None:intergenic | 60.0% | |
! | CAAAGATGTGGGCTGCTGGC+TGG | - | chr8.1:2162782-2162801 | MS.gene012611:intron | 60.0% |
! | GGCCCAAAGATGTGGGCTGC+TGG | - | chr8.1:2162778-2162797 | MS.gene012611:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 2160909 | 2163811 | 2160909 | ID=MS.gene012611 |
chr8.1 | mRNA | 2160909 | 2163811 | 2160909 | ID=MS.gene012611.t1;Parent=MS.gene012611 |
chr8.1 | exon | 2163308 | 2163811 | 2163308 | ID=MS.gene012611.t1.exon1;Parent=MS.gene012611.t1 |
chr8.1 | CDS | 2163308 | 2163811 | 2163308 | ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1 |
chr8.1 | exon | 2162379 | 2162604 | 2162379 | ID=MS.gene012611.t1.exon2;Parent=MS.gene012611.t1 |
chr8.1 | CDS | 2162379 | 2162604 | 2162379 | ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1 |
chr8.1 | exon | 2161878 | 2162100 | 2161878 | ID=MS.gene012611.t1.exon3;Parent=MS.gene012611.t1 |
chr8.1 | CDS | 2161878 | 2162100 | 2161878 | ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1 |
chr8.1 | exon | 2161096 | 2161309 | 2161096 | ID=MS.gene012611.t1.exon4;Parent=MS.gene012611.t1 |
chr8.1 | CDS | 2161096 | 2161309 | 2161096 | ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1 |
chr8.1 | exon | 2160909 | 2160920 | 2160909 | ID=MS.gene012611.t1.exon5;Parent=MS.gene012611.t1 |
chr8.1 | CDS | 2160909 | 2160920 | 2160909 | ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1 |
Gene Sequence |
Protein sequence |