AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012611


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012611.t1 MTR_4g131800 90.338 414 17 1 1 391 1 414 0.0 703
MS.gene012611.t1 MTR_2g022700 87.332 371 47 0 22 392 25 395 0.0 638
MS.gene012611.t1 MTR_3g049400 78.261 368 66 5 36 392 37 401 0.0 556
MS.gene012611.t1 MTR_2g029180 51.613 341 150 8 62 389 54 392 1.75e-98 299
MS.gene012611.t1 MTR_4g088350 44.781 297 155 4 99 391 97 388 6.49e-81 254
MS.gene012611.t1 MTR_5g044220 41.159 328 174 5 75 391 74 393 8.29e-78 246
MS.gene012611.t1 MTR_6g005480 46.774 310 154 5 92 392 101 408 1.18e-75 241
MS.gene012611.t1 MTR_4g105630 41.946 298 170 2 97 392 81 377 6.67e-72 230
MS.gene012611.t1 MTR_4g105630 40.893 291 169 2 97 385 81 370 4.77e-67 217
MS.gene012611.t1 MTR_3g077640 41.049 324 181 4 78 392 80 402 7.77e-67 218
MS.gene012611.t1 MTR_4g088350 42.910 268 144 4 128 391 15 277 6.97e-66 211
MS.gene012611.t1 MTR_4g105630 38.174 241 146 2 97 335 81 320 4.47e-46 162
MS.gene012611.t1 MTR_4g105630 40.000 215 127 1 97 309 81 295 7.28e-44 155
MS.gene012611.t1 MTR_1g030320 26.557 305 185 7 108 392 21 306 6.86e-24 101
MS.gene012611.t1 MTR_3g072380 26.230 305 186 7 108 392 22 307 3.79e-23 99.4
MS.gene012611.t1 MTR_3g072380 30.357 168 107 3 108 268 22 186 5.66e-17 80.1
MS.gene012611.t1 MTR_3g070000 22.531 324 228 11 84 392 4 319 1.12e-16 80.5
MS.gene012611.t1 MTR_5g081710 22.727 308 224 9 93 392 2 303 4.32e-15 75.9
MS.gene012611.t1 MTR_3g462070 21.918 292 217 6 108 392 17 304 1.43e-14 74.3
MS.gene012611.t1 MTR_4g018760 22.526 293 216 6 107 392 19 307 2.69e-13 70.5
MS.gene012611.t1 MTR_4g101860 21.839 348 241 8 67 392 9 347 4.54e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012611.t1 AT1G61800 82.500 360 50 2 38 392 37 388 0.0 591
MS.gene012611.t1 AT1G61800 81.667 360 53 2 38 392 37 388 0.0 585
MS.gene012611.t1 AT5G54800 79.539 347 60 2 49 391 48 387 0.0 543
MS.gene012611.t1 AT5G17630 50.136 367 167 9 34 390 42 402 2.50e-112 335
MS.gene012611.t1 AT4G03950 56.997 293 69 6 101 392 18 254 2.64e-92 279
MS.gene012611.t1 AT5G46110 38.211 369 204 6 33 391 43 397 1.05e-80 254
MS.gene012611.t1 AT5G46110 38.211 369 204 6 33 391 43 397 1.24e-80 253
MS.gene012611.t1 AT5G46110 44.444 288 151 4 108 391 2 284 1.27e-79 247
MS.gene012611.t1 AT5G46110 37.127 369 197 7 33 391 43 386 1.21e-75 240
MS.gene012611.t1 AT3G01550 42.345 307 174 2 89 392 67 373 1.74e-68 221
MS.gene012611.t1 AT3G01550 41.368 307 172 3 89 392 67 368 1.56e-64 211
MS.gene012611.t1 AT5G33320 38.650 326 191 3 74 391 75 399 6.35e-63 207
MS.gene012611.t1 AT1G77610 25.503 298 197 5 108 392 16 301 2.56e-23 100
MS.gene012611.t1 AT1G21870 25.503 298 197 6 108 392 22 307 8.98e-23 98.6
MS.gene012611.t1 AT5G05820 24.000 300 214 9 101 392 12 305 5.72e-18 84.3
MS.gene012611.t1 AT3G11320 23.333 300 216 9 101 392 12 305 3.00e-16 79.3
MS.gene012611.t1 AT1G12500 23.729 295 212 7 106 392 64 353 4.61e-14 73.2

Find 98 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTATATGTTTCAGGGTTTA+TGG 0.101964 8.1:-2162092 MS.gene012611:intron
CTTTCATTGCTGCCAATTAT+TGG 0.180449 8.1:-2162426 MS.gene012611:CDS
TTAAGCTTACCATACAAAAT+TGG 0.184444 8.1:+2161868 None:intergenic
GAGAAGCAGTAGAGATAATA+TGG 0.194779 8.1:+2161967 None:intergenic
CAGCCAGCAGCCCACATCTT+TGG 0.196761 8.1:+2161917 None:intergenic
TTCCCTATGCTAAATGTTAA+TGG 0.247165 8.1:+2161214 None:intergenic
TGAGGCCCCTAAAGTTAATT+TGG 0.255186 8.1:-2163331 MS.gene012611:CDS
CCAATGTGGCCTTTGTGTTT+AGG 0.259810 8.1:-2162057 MS.gene012611:CDS
AGCCAGCAGCCCACATCTTT+GGG 0.269548 8.1:+2161918 None:intergenic
AGTTTCCCTCCTTGTGAGTT+TGG 0.275392 8.1:+2163599 None:intergenic
GCAGCTCAGAAACTCAAAAT+TGG 0.310246 8.1:-2163507 MS.gene012611:CDS
AGGGCATTGTTTGGCTGAAT+TGG 0.315373 8.1:+2161139 None:intergenic
CTTTCCAACAGGGTGAATAA+TGG 0.322181 8.1:+2163698 None:intergenic
GTATATGTTTCAGGGTTTAT+GGG 0.323201 8.1:-2162091 MS.gene012611:intron
CTAAAATACACATTACTGTT+TGG 0.328456 8.1:+2160897 None:intergenic
AGTGCACAACCTCCAATAAT+TGG 0.333090 8.1:+2162414 None:intergenic
TGTTAATCTCATGGGCTACT+AGG 0.338741 8.1:-2163359 MS.gene012611:CDS
TTATTTGTGTTCTTTCCAAC+AGG 0.349705 8.1:+2163687 None:intergenic
GAACTTAATTTCAATATGAT+TGG 0.357019 8.1:-2162378 MS.gene012611:intron
TGTAAATGAAACTGCAACTT+TGG 0.364668 8.1:+2162533 None:intergenic
TTTCCAACAGGGTGAATAAT+GGG 0.368520 8.1:+2163699 None:intergenic
CTGTGACCTATCTGCTTCAT+AGG 0.377418 8.1:+2163566 None:intergenic
TCCACTTTGTCCCTTGCTGC+TGG 0.380408 8.1:-2163393 MS.gene012611:CDS
TAAGCTTACCATACAAAATT+GGG 0.391221 8.1:+2161869 None:intergenic
GTTGCAGTGGCACATACAAT+TGG 0.392389 8.1:-2162582 MS.gene012611:CDS
TTCTGAGCTGCTTGTTCACC+TGG 0.392509 8.1:+2163519 None:intergenic
GGTGCTGCCATTGCAATCCT+TGG 0.398279 8.1:-2161115 MS.gene012611:CDS
CTCTCATCATGTTAATCTCA+TGG 0.398591 8.1:-2163368 MS.gene012611:CDS
TCATTACCCTTTACCAACTT+TGG 0.400604 8.1:-2163762 MS.gene012611:CDS
GGCCCAAAGATGTGGGCTGC+TGG 0.405747 8.1:-2161920 MS.gene012611:CDS
TAGGAATATATTCTCAAAGA+AGG 0.412057 8.1:-2162038 MS.gene012611:CDS
CAAAGATGTGGGCTGCTGGC+TGG 0.414219 8.1:-2161916 MS.gene012611:CDS
ATGGGTAATGTGCATAGTTT+AGG 0.414988 8.1:+2163717 None:intergenic
CTCCATTAACATTTAGCATA+GGG 0.419291 8.1:-2161216 MS.gene012611:CDS
GATGAACCAAAGTTGGTAAA+GGG 0.421343 8.1:+2163756 None:intergenic
GCAGCACCAAGGGCATTGTT+TGG 0.422130 8.1:+2161130 None:intergenic
TACAAAATTGGGACCAATCT+GGG 0.424232 8.1:+2161880 None:intergenic
ATACAAAATTGGGACCAATC+TGG 0.428493 8.1:+2161879 None:intergenic
CCTTCCACAGCAATAGCAAA+AGG 0.450440 8.1:+2161941 None:intergenic
AATGTGCATAGTTTAGGCCT+TGG 0.452348 8.1:+2163723 None:intergenic
ATGAAAGGTAAACTTGTAAA+GGG 0.453481 8.1:+2162442 None:intergenic
AATGAAAGGTAAACTTGTAA+AGG 0.460416 8.1:+2162441 None:intergenic
TGATGAACCAAAGTTGGTAA+AGG 0.462222 8.1:+2163755 None:intergenic
AAAGTTTGATGAACCAAAGT+TGG 0.464102 8.1:+2163749 None:intergenic
TCATTGCTGCCAATTATTGG+AGG 0.465645 8.1:-2162423 MS.gene012611:CDS
TATATGTTTCAGGGTTTATG+GGG 0.470350 8.1:-2162090 MS.gene012611:intron
TTACCCATTATTCACCCTGT+TGG 0.474011 8.1:-2163702 MS.gene012611:CDS
TTTACACACATAATCAAAAG+TGG 0.474109 8.1:-2162516 MS.gene012611:CDS
AGCAGATAGGTCACAGCCAT+TGG 0.485312 8.1:-2163559 MS.gene012611:CDS
TTTCAATATTTACAACAAGA+AGG 0.489567 8.1:-2163448 MS.gene012611:CDS
GTTAATCTCATGGGCTACTA+GGG 0.492852 8.1:-2163358 MS.gene012611:CDS
GTGGAAGTAAGCCAAGGATA+AGG 0.497515 8.1:+2163411 None:intergenic
TGGCACCTTCCTCTATTCAC+AGG 0.498982 8.1:-2161095 MS.gene012611:intron
ATGAAAGGAATGTCTGTTAG+TGG 0.500986 8.1:-2162013 MS.gene012611:CDS
TTGCAGTGGCACATACAATT+GGG 0.501192 8.1:-2162581 MS.gene012611:CDS
GTTCATCAAACTTTATTCCA+AGG 0.503318 8.1:-2163740 MS.gene012611:CDS
TCTCCATTAACATTTAGCAT+AGG 0.504196 8.1:-2161217 MS.gene012611:CDS
GGGAATGGACCTGTGAATAG+AGG 0.507084 8.1:+2161086 None:intergenic
CTTCCACAGCAATAGCAAAA+GGG 0.507964 8.1:+2161942 None:intergenic
TCAGTGGATGATATGTAAAG+AGG 0.515667 8.1:+2163642 None:intergenic
GAGCTGCTTGTTCACCTGGT+AGG 0.516916 8.1:+2163523 None:intergenic
CAAACAGCAGTGTCCCAGAT+TGG 0.535343 8.1:-2161893 MS.gene012611:CDS
TTCTCAAAGAAGGGAATGAA+AGG 0.535780 8.1:-2162028 MS.gene012611:CDS
ACCAGCAGCAAGGGACAAAG+TGG 0.537499 8.1:+2163392 None:intergenic
AGGAATATATTCTCAAAGAA+GGG 0.541673 8.1:-2162037 MS.gene012611:CDS
CCTAAACACAAAGGCCACAT+TGG 0.548843 8.1:+2162057 None:intergenic
CAATAATTGGCAGCAATGAA+AGG 0.550796 8.1:+2162427 None:intergenic
ATTCAGCCAAACAATGCCCT+TGG 0.558227 8.1:-2161136 MS.gene012611:CDS
TCTCATCATGTTAATCTCAT+GGG 0.562801 8.1:-2163367 MS.gene012611:CDS
GTTTGAGAGAAGACAAAGAG+AGG 0.565693 8.1:+2163664 None:intergenic
AAAATCCAAATTAACTTTAG+GGG 0.568648 8.1:+2163326 None:intergenic
GATGAGAGAACCAGCAGCAA+GGG 0.572112 8.1:+2163383 None:intergenic
ATTTAAACTGCAGGTTGCAG+TGG 0.576270 8.1:-2162595 MS.gene012611:intron
ATGGGCTACTAGGGTTGCTG+AGG 0.583408 8.1:-2163349 MS.gene012611:CDS
AGGTCAATATTAATCTCCAA+TGG 0.584548 8.1:+2163543 None:intergenic
AACATGGTGGGCTTTGAATG+TGG 0.587072 8.1:-2163472 MS.gene012611:CDS
GATTGCAATGGCAGCACCAA+GGG 0.590233 8.1:+2161120 None:intergenic
GATACAAGAACACTGAAAGC+AGG 0.598642 8.1:+2162489 None:intergenic
TTGCATGCTTACAGGAAACA+AGG 0.604931 8.1:+2163296 None:intergenic
CTGTGGAAGGCCCAAAGATG+TGG 0.607847 8.1:-2161928 MS.gene012611:CDS
GTGAATAGAGGAAGGTGCCA+AGG 0.609003 8.1:+2161098 None:intergenic
TTCCACAGCAATAGCAAAAG+GGG 0.609710 8.1:+2161943 None:intergenic
GTCATGCCTATGAAGCAGAT+AGG 0.618296 8.1:-2163572 MS.gene012611:CDS
AACAACCAAACTCACAAGGA+GGG 0.622699 8.1:-2163604 MS.gene012611:CDS
GAATACGATGAAGAGAATCT+CGG 0.623011 8.1:-2161194 MS.gene012611:CDS
ATATGTTTCAGGGTTTATGG+GGG 0.623221 8.1:-2162089 MS.gene012611:intron
TGATGAGAGAACCAGCAGCA+AGG 0.629327 8.1:+2163382 None:intergenic
GACAAAGTGGAAGTAAGCCA+AGG 0.631812 8.1:+2163405 None:intergenic
GAAGGTGCCAAGGATTGCAA+TGG 0.634289 8.1:+2161108 None:intergenic
ATGGACCTGTGAATAGAGGA+AGG 0.642169 8.1:+2161090 None:intergenic
GAGATTAATATTGACCTACC+AGG 0.648457 8.1:-2163537 MS.gene012611:CDS
GGATTGCAATGGCAGCACCA+AGG 0.661338 8.1:+2161119 None:intergenic
TATTTGTGTTCTTTCCAACA+GGG 0.663249 8.1:+2163688 None:intergenic
GCAGTAGAGATAATATGGAG+AGG 0.668394 8.1:+2161972 None:intergenic
TGTGGAAGGCCCAAAGATGT+GGG 0.679025 8.1:-2161927 MS.gene012611:CDS
GAATATATTCCTAAACACAA+AGG 0.680902 8.1:+2162048 None:intergenic
CAACAACCAAACTCACAAGG+AGG 0.683879 8.1:-2163605 MS.gene012611:CDS
TCTCAACAACCAAACTCACA+AGG 0.695316 8.1:-2163608 MS.gene012611:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATCCAAATTAACTTTA+GGG + chr8.1:2161376-2161395 None:intergenic 15.0%
!! AAGCAATAAAATTAAGAAAA+AGG + chr8.1:2161441-2161460 None:intergenic 15.0%
!! ACATGTATATATAAAATGAA+CGG + chr8.1:2163692-2163711 None:intergenic 15.0%
!!! AAAATTGATTTTGAATGAAT+TGG - chr8.1:2161550-2161569 MS.gene012611:intron 15.0%
!!! TACATAAAAACTTTTATGAT+TGG + chr8.1:2162961-2162980 None:intergenic 15.0%
!!! TTTCTTTTTATTTATTTCAC+AGG - chr8.1:2163778-2163797 MS.gene012611:CDS 15.0%
!! AAAATCCAAATTAACTTTAG+GGG + chr8.1:2161375-2161394 None:intergenic 20.0%
!! AATAAGAAAGCAAAAATAGA+AGG + chr8.1:2163641-2163660 None:intergenic 20.0%
!! ACTATATTCACTTATTTACA+TGG - chr8.1:2162347-2162366 MS.gene012611:intron 20.0%
!! CAAAAATCCAAATTAACTTT+AGG + chr8.1:2161377-2161396 None:intergenic 20.0%
!! GAACTTAATTTCAATATGAT+TGG - chr8.1:2162320-2162339 MS.gene012611:intron 20.0%
!! TTTCAATATTTACAACAAGA+AGG - chr8.1:2161250-2161269 MS.gene012611:CDS 20.0%
!!! AATATTGATTTAGTACTGAA+TGG - chr8.1:2162077-2162096 MS.gene012611:CDS 20.0%
!!! ATATTGATTTAGTACTGAAT+GGG - chr8.1:2162078-2162097 MS.gene012611:CDS 20.0%
!!! CTAAAGTTAATTTGGATTTT+TGG - chr8.1:2161375-2161394 MS.gene012611:intron 20.0%
!!! GTTTTAATATAGTCTATGTT+TGG + chr8.1:2161901-2161920 None:intergenic 20.0%
! AAAAGACCTTAGAGATATAA+TGG + chr8.1:2162898-2162917 None:intergenic 25.0%
! AAAGCAAAAATAGAAGGAAA+GGG + chr8.1:2163635-2163654 None:intergenic 25.0%
! AATGAAAGGTAAACTTGTAA+AGG + chr8.1:2162260-2162279 None:intergenic 25.0%
! AGGAATATATTCTCAAAGAA+GGG - chr8.1:2162661-2162680 MS.gene012611:intron 25.0%
! ATATGTCTTGTATATGTTTC+AGG - chr8.1:2162598-2162617 MS.gene012611:intron 25.0%
! ATGAAAGGTAAACTTGTAAA+GGG + chr8.1:2162259-2162278 None:intergenic 25.0%
! ATGAAATAGTACACAACAAT+GGG + chr8.1:2162873-2162892 None:intergenic 25.0%
! ATGTTCTGTTTATAGTAGAT+TGG - chr8.1:2162390-2162409 MS.gene012611:CDS 25.0%
! ATTATCAATATTCATGGTCA+AGG + chr8.1:2163291-2163310 None:intergenic 25.0%
! CATTTGACTAATGAACTTAT+GGG - chr8.1:2163373-2163392 MS.gene012611:CDS 25.0%
! GAATATATTCCTAAACACAA+AGG + chr8.1:2162653-2162672 None:intergenic 25.0%
! TAAAAAGACTGTAAAACAGT+TGG + chr8.1:2163175-2163194 None:intergenic 25.0%
! TAAGCTTACCATACAAAATT+GGG + chr8.1:2162832-2162851 None:intergenic 25.0%
! TAGGAATATATTCTCAAAGA+AGG - chr8.1:2162660-2162679 MS.gene012611:intron 25.0%
! TAGGCTGAAAAATAAATTTG+AGG - chr8.1:2161600-2161619 MS.gene012611:intron 25.0%
! TATGAAATAGTACACAACAA+TGG + chr8.1:2162874-2162893 None:intergenic 25.0%
! TATGTCTTGTATATGTTTCA+GGG - chr8.1:2162599-2162618 MS.gene012611:intron 25.0%
! TATTCACTTATTTACATGGT+TGG - chr8.1:2162351-2162370 MS.gene012611:intron 25.0%
! TCATATCCATTATATCTCTA+AGG - chr8.1:2162889-2162908 MS.gene012611:intron 25.0%
! TCATTTGACTAATGAACTTA+TGG - chr8.1:2163372-2163391 MS.gene012611:CDS 25.0%
! TGAATTGAATGATCAATTTG+AGG + chr8.1:2161955-2161974 None:intergenic 25.0%
! TGTTCTGTTTATAGTAGATT+GGG - chr8.1:2162391-2162410 MS.gene012611:CDS 25.0%
! TTAAGCTTACCATACAAAAT+TGG + chr8.1:2162833-2162852 None:intergenic 25.0%
! TTCAAGATATAGAAGATCTA+CGG - chr8.1:2161731-2161750 MS.gene012611:intron 25.0%
! TTTACACACATAATCAAAAG+TGG - chr8.1:2162182-2162201 MS.gene012611:intron 25.0%
!! TAATTTTATTGTTGACACAC+AGG + chr8.1:2163722-2163741 None:intergenic 25.0%
!!! AGAAGCATTATCAATATTCA+TGG + chr8.1:2163297-2163316 None:intergenic 25.0%
!!! AGTTAATTTGGATTTTTGGA+AGG - chr8.1:2161379-2161398 MS.gene012611:intron 25.0%
!!! ATTGATAATGCTTCTTCAAA+AGG - chr8.1:2163302-2163321 MS.gene012611:intron 25.0%
!!! TATTGATTTAGTACTGAATG+GGG - chr8.1:2162079-2162098 MS.gene012611:CDS 25.0%
!!! TTATGGGTAGTAATTTTTTC+AGG - chr8.1:2163389-2163408 MS.gene012611:CDS 25.0%
!!! TTATTTACATGGTTGGTTTT+CGG - chr8.1:2162358-2162377 MS.gene012611:intron 25.0%
!!! TTGATAATGCTTCTTCAAAA+GGG - chr8.1:2163303-2163322 MS.gene012611:intron 25.0%
AAAAATAGAAGGAAAGGGAA+TGG + chr8.1:2163630-2163649 None:intergenic 30.0%
AAAGTTTGATGAACCAAAGT+TGG + chr8.1:2160952-2160971 None:intergenic 30.0%
ACACATGTATCTTCTAATTG+TGG - chr8.1:2161827-2161846 MS.gene012611:intron 30.0%
AGGTCAATATTAATCTCCAA+TGG + chr8.1:2161158-2161177 None:intergenic 30.0%
ATATATGTCAGTGTCTATGT+CGG + chr8.1:2162478-2162497 None:intergenic 30.0%
CGGACATAAAAAATAGTGAA+TGG + chr8.1:2163672-2163691 None:intergenic 30.0%
CTCCATTAACATTTAGCATA+GGG - chr8.1:2163482-2163501 MS.gene012611:CDS 30.0%
GAAAGCAAAAATAGAAGGAA+AGG + chr8.1:2163636-2163655 None:intergenic 30.0%
GTAGATCTTCTATATCTTGA+AGG + chr8.1:2161732-2161751 None:intergenic 30.0%
GTATATGTTTCAGGGTTTAT+GGG - chr8.1:2162607-2162626 MS.gene012611:intron 30.0%
GTTCATCAAACTTTATTCCA+AGG - chr8.1:2160958-2160977 MS.gene012611:intron 30.0%
TATATGTTTCAGGGTTTATG+GGG - chr8.1:2162608-2162627 MS.gene012611:intron 30.0%
TATTTGTGTTCTTTCCAACA+GGG + chr8.1:2161013-2161032 None:intergenic 30.0%
TCAAGATATAGAAGATCTAC+GGG - chr8.1:2161732-2161751 MS.gene012611:intron 30.0%
TCTCATCATGTTAATCTCAT+GGG - chr8.1:2161331-2161350 MS.gene012611:intron 30.0%
TCTCCATTAACATTTAGCAT+AGG - chr8.1:2163481-2163500 MS.gene012611:CDS 30.0%
TGTAAATGAAACTGCAACTT+TGG + chr8.1:2162168-2162187 None:intergenic 30.0%
TGTATATGTTTCAGGGTTTA+TGG - chr8.1:2162606-2162625 MS.gene012611:intron 30.0%
TTATTTGTGTTCTTTCCAAC+AGG + chr8.1:2161014-2161033 None:intergenic 30.0%
TTCCCTATGCTAAATGTTAA+TGG + chr8.1:2163487-2163506 None:intergenic 30.0%
TTTCTATAAGCTCTCTCATA+GGG - chr8.1:2163111-2163130 MS.gene012611:intron 30.0%
! CTTGTATCAAGATTTTTGCT+TGG - chr8.1:2162224-2162243 MS.gene012611:intron 30.0%
! GATTGATTCTAGCTAAAAGT+AGG - chr8.1:2161581-2161600 MS.gene012611:intron 30.0%
! TTAGAGTTTGTTCTGTTCTA+CGG + chr8.1:2162035-2162054 None:intergenic 30.0%
! TTTGTATTTTGCAACATGGT+GGG - chr8.1:2161214-2161233 MS.gene012611:CDS 30.0%
!! TAGTAGATTGGGTTGATAAT+AGG - chr8.1:2162402-2162421 MS.gene012611:CDS 30.0%
!!! ATATCTCTAAGGTCTTTTTG+TGG - chr8.1:2162900-2162919 MS.gene012611:intron 30.0%
!!! TTGGTTTGTATTTTGCAACA+TGG - chr8.1:2161210-2161229 MS.gene012611:CDS 30.0%
AAAAGAGTTTGCATGCTTAC+AGG + chr8.1:2161413-2161432 None:intergenic 35.0%
ACACTAACACTTCCAATTGA+AGG - chr8.1:2162440-2162459 MS.gene012611:CDS 35.0%
ACTGTAAAACAGTTGGACTA+AGG + chr8.1:2163168-2163187 None:intergenic 35.0%
AGATTCTTGCTTTCGAAGTA+CGG - chr8.1:2162054-2162073 MS.gene012611:CDS 35.0%
ATACAAAATTGGGACCAATC+TGG + chr8.1:2162822-2162841 None:intergenic 35.0%
ATACCTAACACACCTTCAAT+TGG + chr8.1:2162455-2162474 None:intergenic 35.0%
ATATGTTTCAGGGTTTATGG+GGG - chr8.1:2162609-2162628 MS.gene012611:intron 35.0%
ATGAAAGGAATGTCTGTTAG+TGG - chr8.1:2162685-2162704 MS.gene012611:intron 35.0%
ATGCTATCCTAAAGAGCTTA+TGG - chr8.1:2163049-2163068 MS.gene012611:intron 35.0%
ATGGGTAATGTGCATAGTTT+AGG + chr8.1:2160984-2161003 None:intergenic 35.0%
CAATAATTGGCAGCAATGAA+AGG + chr8.1:2162274-2162293 None:intergenic 35.0%
CTCATATCCATAAGCTCTTT+AGG + chr8.1:2163059-2163078 None:intergenic 35.0%
CTCTCATCATGTTAATCTCA+TGG - chr8.1:2161330-2161349 MS.gene012611:intron 35.0%
CTGTAAAACAGTTGGACTAA+GGG + chr8.1:2163167-2163186 None:intergenic 35.0%
CTTTCATTGCTGCCAATTAT+TGG - chr8.1:2162272-2162291 MS.gene012611:intron 35.0%
GAATACGATGAAGAGAATCT+CGG - chr8.1:2163504-2163523 MS.gene012611:CDS 35.0%
GAGAAGCAGTAGAGATAATA+TGG + chr8.1:2162734-2162753 None:intergenic 35.0%
GAGATTAATATTGACCTACC+AGG - chr8.1:2161161-2161180 MS.gene012611:CDS 35.0%
GTTTCTATAAGCTCTCTCAT+AGG - chr8.1:2163110-2163129 MS.gene012611:intron 35.0%
TACAAAATTGGGACCAATCT+GGG + chr8.1:2162821-2162840 None:intergenic 35.0%
TCAGTGGATGATATGTAAAG+AGG + chr8.1:2161059-2161078 None:intergenic 35.0%
TCATTACCCTTTACCAACTT+TGG - chr8.1:2160936-2160955 MS.gene012611:intron 35.0%
TTAGTCTCTGACTTTCTACT+GGG + chr8.1:2161708-2161727 None:intergenic 35.0%
TTCTCAAAGAAGGGAATGAA+AGG - chr8.1:2162670-2162689 MS.gene012611:intron 35.0%
TTTCCAACAGGGTGAATAAT+GGG + chr8.1:2161002-2161021 None:intergenic 35.0%
! ATTAGTCTCTGACTTTCTAC+TGG + chr8.1:2161709-2161728 None:intergenic 35.0%
! GTTTGTATTTTGCAACATGG+TGG - chr8.1:2161213-2161232 MS.gene012611:CDS 35.0%
! TAGAGTTTGTTCTGTTCTAC+GGG + chr8.1:2162034-2162053 None:intergenic 35.0%
! TGAATGCTTTTCCTTATCCT+TGG - chr8.1:2161276-2161295 MS.gene012611:CDS 35.0%
! TGAGAAACTGAAGTTTTCAG+TGG + chr8.1:2161075-2161094 None:intergenic 35.0%
! TGTAAGCATGCAAACTCTTT+TGG - chr8.1:2161412-2161431 MS.gene012611:intron 35.0%
!! AGATTGGTCCCAATTTTGTA+TGG - chr8.1:2162821-2162840 MS.gene012611:intron 35.0%
!! GATGAACCAAAGTTGGTAAA+GGG + chr8.1:2160945-2160964 None:intergenic 35.0%
!! TGATGAACCAAAGTTGGTAA+AGG + chr8.1:2160946-2160965 None:intergenic 35.0%
!!! GGGTAGTAATTTTTTCAGGT+GGG - chr8.1:2163393-2163412 MS.gene012611:CDS 35.0%
!!! TGGGTAGTAATTTTTTCAGG+TGG - chr8.1:2163392-2163411 MS.gene012611:CDS 35.0%
AACAACCAAACTCACAAGGA+GGG - chr8.1:2161094-2161113 MS.gene012611:intron 40.0%
AACCATGACCACATGCTTAA+GGG - chr8.1:2161804-2161823 MS.gene012611:intron 40.0%
AATGTGCATAGTTTAGGCCT+TGG + chr8.1:2160978-2160997 None:intergenic 40.0%
AGTGCACAACCTCCAATAAT+TGG + chr8.1:2162287-2162306 None:intergenic 40.0%
ATACTAGTGTGTGGAGATCA+TGG - chr8.1:2163231-2163250 MS.gene012611:intron 40.0%
ATGATCTCCACACACTAGTA+TGG + chr8.1:2163232-2163251 None:intergenic 40.0%
ATTTAAACTGCAGGTTGCAG+TGG - chr8.1:2162103-2162122 MS.gene012611:intron 40.0%
CTAATTGTGGCACACTATGT+TGG - chr8.1:2161840-2161859 MS.gene012611:intron 40.0%
CTTCCACAGCAATAGCAAAA+GGG + chr8.1:2162759-2162778 None:intergenic 40.0%
CTTTCCAACAGGGTGAATAA+TGG + chr8.1:2161003-2161022 None:intergenic 40.0%
GAATGGGGAATTTAAACTGC+AGG - chr8.1:2162094-2162113 MS.gene012611:intron 40.0%
GATACAAGAACACTGAAAGC+AGG + chr8.1:2162212-2162231 None:intergenic 40.0%
GCAGCTCAGAAACTCAAAAT+TGG - chr8.1:2161191-2161210 MS.gene012611:CDS 40.0%
GCAGTAGAGATAATATGGAG+AGG + chr8.1:2162729-2162748 None:intergenic 40.0%
GTTTGAGAGAAGACAAAGAG+AGG + chr8.1:2161037-2161056 None:intergenic 40.0%
GTTTGGCTACAATTTCGAAG+AGG + chr8.1:2161884-2161903 None:intergenic 40.0%
TCATTGCTGCCAATTATTGG+AGG - chr8.1:2162275-2162294 MS.gene012611:intron 40.0%
TCTCAACAACCAAACTCACA+AGG - chr8.1:2161090-2161109 MS.gene012611:intron 40.0%
TGAGGCCCCTAAAGTTAATT+TGG - chr8.1:2161367-2161386 MS.gene012611:intron 40.0%
TGCTTCTTCAAAAGGGTCTA+TGG - chr8.1:2163310-2163329 MS.gene012611:CDS 40.0%
TTACCCATTATTCACCCTGT+TGG - chr8.1:2160996-2161015 MS.gene012611:intron 40.0%
TTCCACAGCAATAGCAAAAG+GGG + chr8.1:2162758-2162777 None:intergenic 40.0%
TTGCAGTGGCACATACAATT+GGG - chr8.1:2162117-2162136 MS.gene012611:intron 40.0%
TTGCATGCTTACAGGAAACA+AGG + chr8.1:2161405-2161424 None:intergenic 40.0%
! AGAGTTTGTTCTGTTCTACG+GGG + chr8.1:2162033-2162052 None:intergenic 40.0%
! CTTCCAATTGAAGGTGTGTT+AGG - chr8.1:2162449-2162468 MS.gene012611:CDS 40.0%
! GGTAGAGCACTTGTTAAAAG+AGG + chr8.1:2161764-2161783 None:intergenic 40.0%
! GTTAATCTCATGGGCTACTA+GGG - chr8.1:2161340-2161359 MS.gene012611:intron 40.0%
! TGTTAATCTCATGGGCTACT+AGG - chr8.1:2161339-2161358 MS.gene012611:intron 40.0%
ACATGTGTCCCTTAAGCATG+TGG + chr8.1:2161815-2161834 None:intergenic 45.0%
AGGGTCTAACAAATGCACTG+TGG - chr8.1:2163130-2163149 MS.gene012611:intron 45.0%
AGTTGGACTAAGGGTCTGTT+TGG + chr8.1:2163158-2163177 None:intergenic 45.0%
AGTTTCCCTCCTTGTGAGTT+TGG + chr8.1:2161102-2161121 None:intergenic 45.0%
ATGGACCTGTGAATAGAGGA+AGG + chr8.1:2163611-2163630 None:intergenic 45.0%
ATTCAGCCAAACAATGCCCT+TGG - chr8.1:2163562-2163581 MS.gene012611:CDS 45.0%
CAACAACCAAACTCACAAGG+AGG - chr8.1:2161093-2161112 MS.gene012611:intron 45.0%
CCAATGTGGCCTTTGTGTTT+AGG - chr8.1:2162641-2162660 MS.gene012611:intron 45.0%
CCTAAACACAAAGGCCACAT+TGG + chr8.1:2162644-2162663 None:intergenic 45.0%
CCTTCCACAGCAATAGCAAA+AGG + chr8.1:2162760-2162779 None:intergenic 45.0%
CTGTGACCTATCTGCTTCAT+AGG + chr8.1:2161135-2161154 None:intergenic 45.0%
GAACCATGACCACATGCTTA+AGG - chr8.1:2161803-2161822 MS.gene012611:intron 45.0%
GACAAAGTGGAAGTAAGCCA+AGG + chr8.1:2161296-2161315 None:intergenic 45.0%
GGGTCTAACAAATGCACTGT+GGG - chr8.1:2163131-2163150 MS.gene012611:intron 45.0%
GTCATGCCTATGAAGCAGAT+AGG - chr8.1:2161126-2161145 MS.gene012611:CDS 45.0%
GTGGAAGTAAGCCAAGGATA+AGG + chr8.1:2161290-2161309 None:intergenic 45.0%
GTTGCAGTGGCACATACAAT+TGG - chr8.1:2162116-2162135 MS.gene012611:intron 45.0%
TGACACTGATATGTCGACAC+TGG + chr8.1:2162537-2162556 None:intergenic 45.0%
!! AACATGGTGGGCTTTGAATG+TGG - chr8.1:2161226-2161245 MS.gene012611:CDS 45.0%
!! AGGGCATTGTTTGGCTGAAT+TGG + chr8.1:2163562-2163581 None:intergenic 45.0%
!!! CCTTTTGCTATTGCTGTGGA+AGG - chr8.1:2162757-2162776 MS.gene012611:intron 45.0%
AGCAGATAGGTCACAGCCAT+TGG - chr8.1:2161139-2161158 MS.gene012611:CDS 50.0%
CAAACAGCAGTGTCCCAGAT+TGG - chr8.1:2162805-2162824 MS.gene012611:intron 50.0%
GATGAGAGAACCAGCAGCAA+GGG + chr8.1:2161318-2161337 None:intergenic 50.0%
GATTGCAATGGCAGCACCAA+GGG + chr8.1:2163581-2163600 None:intergenic 50.0%
GCGCAAACCATACTAGTGTG+TGG - chr8.1:2163222-2163241 MS.gene012611:intron 50.0%
GGGAATGGACCTGTGAATAG+AGG + chr8.1:2163615-2163634 None:intergenic 50.0%
GGGGGCTATGATATCCAATG+TGG - chr8.1:2162627-2162646 MS.gene012611:intron 50.0%
GTCCCTTAAGCATGTGGTCA+TGG + chr8.1:2161809-2161828 None:intergenic 50.0%
TCGACGCTGACATGTGTGTA+TGG + chr8.1:2161785-2161804 None:intergenic 50.0%
TGATGAGAGAACCAGCAGCA+AGG + chr8.1:2161319-2161338 None:intergenic 50.0%
TGGCACCTTCCTCTATTCAC+AGG - chr8.1:2163603-2163622 MS.gene012611:CDS 50.0%
TGTGGAAGGCCCAAAGATGT+GGG - chr8.1:2162771-2162790 MS.gene012611:intron 50.0%
TTCTGAGCTGCTTGTTCACC+TGG + chr8.1:2161182-2161201 None:intergenic 50.0%
!! GAAGGTGCCAAGGATTGCAA+TGG + chr8.1:2163593-2163612 None:intergenic 50.0%
!! GTGAATAGAGGAAGGTGCCA+AGG + chr8.1:2163603-2163622 None:intergenic 50.0%
!!! CACCCCTTTTGCTATTGCTG+TGG - chr8.1:2162753-2162772 MS.gene012611:intron 50.0%
ACCAGCAGCAAGGGACAAAG+TGG + chr8.1:2161309-2161328 None:intergenic 55.0%
AGCCAGCAGCCCACATCTTT+GGG + chr8.1:2162783-2162802 None:intergenic 55.0%
CTGTGGAAGGCCCAAAGATG+TGG - chr8.1:2162770-2162789 MS.gene012611:intron 55.0%
GAGCTGCTTGTTCACCTGGT+AGG + chr8.1:2161178-2161197 None:intergenic 55.0%
GGATTGCAATGGCAGCACCA+AGG + chr8.1:2163582-2163601 None:intergenic 55.0%
TCCACTTTGTCCCTTGCTGC+TGG - chr8.1:2161305-2161324 MS.gene012611:intron 55.0%
! ATGGGCTACTAGGGTTGCTG+AGG - chr8.1:2161349-2161368 MS.gene012611:intron 55.0%
! GGTGCTGCCATTGCAATCCT+TGG - chr8.1:2163583-2163602 MS.gene012611:CDS 55.0%
!! GCAGCACCAAGGGCATTGTT+TGG + chr8.1:2163571-2163590 None:intergenic 55.0%
CAGCCAGCAGCCCACATCTT+TGG + chr8.1:2162784-2162803 None:intergenic 60.0%
! CAAAGATGTGGGCTGCTGGC+TGG - chr8.1:2162782-2162801 MS.gene012611:intron 60.0%
! GGCCCAAAGATGTGGGCTGC+TGG - chr8.1:2162778-2162797 MS.gene012611:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 2160909 2163811 2160909 ID=MS.gene012611
chr8.1 mRNA 2160909 2163811 2160909 ID=MS.gene012611.t1;Parent=MS.gene012611
chr8.1 exon 2163308 2163811 2163308 ID=MS.gene012611.t1.exon1;Parent=MS.gene012611.t1
chr8.1 CDS 2163308 2163811 2163308 ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1
chr8.1 exon 2162379 2162604 2162379 ID=MS.gene012611.t1.exon2;Parent=MS.gene012611.t1
chr8.1 CDS 2162379 2162604 2162379 ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1
chr8.1 exon 2161878 2162100 2161878 ID=MS.gene012611.t1.exon3;Parent=MS.gene012611.t1
chr8.1 CDS 2161878 2162100 2161878 ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1
chr8.1 exon 2161096 2161309 2161096 ID=MS.gene012611.t1.exon4;Parent=MS.gene012611.t1
chr8.1 CDS 2161096 2161309 2161096 ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1
chr8.1 exon 2160909 2160920 2160909 ID=MS.gene012611.t1.exon5;Parent=MS.gene012611.t1
chr8.1 CDS 2160909 2160920 2160909 ID=cds.MS.gene012611.t1;Parent=MS.gene012611.t1
Gene Sequence

>MS.gene012611

ATGATATCACAAGTCAAGTATACATCATCATTACCCTTTACCAACTTTGGTTCATCAAACTTTATTCCAAGGCCTAAACTATGCACATTACCCATTATTCACCCTGTTGGAAAGAACACAAATAACCTCTCTTTGTCTTCTCTCAAACCTCTTTACATATCATCCACTGAAAACTTCAGTTTCTCAACAACCAAACTCACAAGGAGGGAAACTGAGTGTCATGCCTATGAAGCAGATAGGTCACAGCCATTGGAGATTAATATTGACCTACCAGGTGAACAAGCAGCTCAGAAACTCAAAATTGGTTTGTATTTTGCAACATGGTGGGCTTTGAATGTGGTTTTCAATATTTACAACAAGAAGGTTTTGAATGCTTTTCCTTATCCTTGGCTTACTTCCACTTTGTCCCTTGCTGCTGGTTCTCTCATCATGTTAATCTCATGGGCTACTAGGGTTGCTGAGGCCCCTAAAGTTAATTTGGATTTTTGGAAGGCCTTGTTTCCTGTAAGCATGCAAACTCTTTTGGTTTCCTTTTTCTTAATTTTATTGCTTTTCACATCATATGATAAAATTGATTCTTACATGTATGAATGTTTCTGAGTTAATTTTGACTTCAGAATTAAGTGTGTTTCTGCAGTGATAAAATTGATTTTGAATGAATTGGTTATGTAAGATTGATTCTAGCTAAAAGTAGGCTGAAAAATAAATTTGAGGTAATCAATTCTGCTAGACAATGTCTAAATATACAAAAAACAATTATATAATTCTAGAATCATAATTCTAGAATCAATTTGTTCCCAGTAGAAAGTCAGAGACTAATCCTTCAAGATATAGAAGATCTACGGGAGCTTACCTCTTTTAACAAGTGCTCTACCATACACACATGTCAGCGTCGAACCATGACCACATGCTTAAGGGACACATGTATCTTCTAATTGTGGCACACTATGTTGGTTCTAGAATTAATATTTTCCTCTTCGAAATTGTAGCCAAACATAGACTATATTAAAACTAGAATATGAGTATCAAGAATTGATTTTTAGCCTCAAATTGATCATTCAATTCACTTTTGAACAAAATCAATTTAACAAATTCGATTCATTCAGATCAATTCTGCTCGTCCCCGTAGAACAGAACAAACTCTAAGATTCTTGCTTTCGAAGTACGGAATATTGATTTAGTACTGAATGGGGAATTTAAACTGCAGGTTGCAGTGGCACATACAATTGGGCATGTTGCAGCTACTGTGAGTATGTCCAAAGTTGCAGTTTCATTTACACACATAATCAAAAGTGGAGAACCTGCTTTCAGTGTTCTTGTATCAAGATTTTTGCTTGGTGAAGCATTCCCTTTACAAGTTTACCTTTCATTGCTGCCAATTATTGGAGGTTGTGCACTTGCTGCTGTCACAGAACTTAATTTCAATATGATTGGTAAGACTATATTCACTTATTTACATGGTTGGTTTTCGGATGCTGATTATGTTCTGTTTATAGTAGATTGGGTTGATAATAGGATGTGAAACTATATAACACTAACACTTCCAATTGAAGGTGTGTTAGGTATCCGACATAGACACTGACATATATACTTACATTCAATCGTTCTATTTTCTCTTATTAATACCAGTGTCGACATATCAGTGTCATGTATGTGTTTCACAGATGTTAAATATGTAGTTTGTTGACAATATGTCTTGTATATGTTTCAGGGTTTATGGGGGCTATGATATCCAATGTGGCCTTTGTGTTTAGGAATATATTCTCAAAGAAGGGAATGAAAGGAATGTCTGTTAGTGGAATGAACTATTATGCTTGCCTCTCCATATTATCTCTACTGCTTCTCACCCCTTTTGCTATTGCTGTGGAAGGCCCAAAGATGTGGGCTGCTGGCTGGCAAACAGCAGTGTCCCAGATTGGTCCCAATTTTGTATGGTAAGCTTAACAATCTACACATCTCAACCCATTGTTGTGTACTATTTCATATCCATTATATCTCTAAGGTCTTTTTGTGGATAAACAACTTAAATAAAAGTTTATATCTTAAACGCCAATCATAAAAGTTTTTATGTATAAGCTATTTCTATAACAAAAATAAGATAAGTCAAATTGTTTTCATATTAGCTTTAAGCTGTTTTCATATGCTATCCTAAAGAGCTTATGGATATGAGTTGAAAGCAACTTATAGACATGTTATAAGTTGTTTCTATAAGCTCTCTCATAGGGTCTAACAAATGCACTGTGGGTCCAAACAGACCCTTAGTCCAACTGTTTTACAGTCTTTTTAAAAGTTAAACATTCATTCGAAAGATATGCGCAAACCATACTAGTGTGTGGAGATCATGGTGATTTAATTCACATAAGTCAGTAATTGAGTAGTCCTTGACCATGAATATTGATAATGCTTCTTCAAAAGGGTCTATGGAGCTAGAAGAATTATTCTATAGTGATTGTGAAGTGTTTGTCATTTGACTAATGAACTTATGGGTAGTAATTTTTTCAGGTGGGTAGCTGCACAAAGTGTGTTCTATCACTTGTACAATCAAGTCTCTTATATGTCTCTTGATCAGATTTCTCCATTAACATTTAGCATAGGGAATACGATGAAGAGAATCTCGGTTATTGTCTCTTCGATCATTATCTTTCACACGCCAATTCAGCCAAACAATGCCCTTGGTGCTGCCATTGCAATCCTTGGCACCTTCCTCTATTCACAGGTCCATTCCCTTTCCTTCTATTTTTGCTTTCTTATTCAGTATAACCATTCACTATTTTTTATGTCCGTTCATTTTATATATACATGTGCGCGCGCCTGTGTGTCAACAATAAAATTATATTTCTCAATACTTGTGACAAAACTAATTTGTTTGTTTCTTTTTATTTATTTCACAGGCCAAACAGTAA

Protein sequence

>MS.gene012611.t1

MISQVKYTSSLPFTNFGSSNFIPRPKLCTLPIIHPVGKNTNNLSLSSLKPLYISSTENFSFSTTKLTRRETECHAYEADRSQPLEINIDLPGEQAAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATRVAEAPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPLQVYLSLLPIIGGCALAAVTELNFNMIGFMGAMISNVAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLLLTPFAIAVEGPKMWAAGWQTAVSQIGPNFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPIQPNNALGAAIAILGTFLYSQAKQ