AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013077

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013077.t1 MTR_3g100310 99.363 471 3 0 1 471 47 517 0.0 979
MS.gene013077.t1 MTR_5g032100 73.605 466 123 0 6 471 38 503 0.0 735
MS.gene013077.t1 MTR_4g084570 38.126 459 249 11 21 471 118 549 3.08e-103 319
MS.gene013077.t1 MTR_2g016470 38.144 485 270 14 8 470 139 615 7.45e-101 315
MS.gene013077.t1 MTR_1g031590 37.473 459 252 11 21 471 117 548 5.94e-100 310
MS.gene013077.t1 MTR_3g086570 35.811 444 253 8 37 471 129 549 1.16e-97 304
MS.gene013077.t1 MTR_3g005340 38.210 458 231 12 30 470 123 545 6.96e-97 303
MS.gene013077.t1 MTR_3g099480 34.848 462 243 7 29 470 115 538 4.82e-95 297
MS.gene013077.t1 MTR_5g059260 40.141 426 218 10 56 469 159 559 6.18e-93 293
MS.gene013077.t1 MTR_5g064620 34.125 463 250 8 29 471 86 513 9.15e-91 286
MS.gene013077.t1 MTR_4g082310 37.011 435 225 9 48 469 91 489 8.27e-88 278
MS.gene013077.t1 MTR_2g059350 34.483 464 244 11 28 466 76 504 2.10e-84 269
MS.gene013077.t1 MTR_5g042200 36.425 442 229 11 44 469 72 477 3.49e-84 268
MS.gene013077.t1 MTR_4g110030 34.672 473 240 10 28 466 68 505 1.64e-83 267
MS.gene013077.t1 MTR_5g099010 36.188 467 252 14 7 470 77 500 2.58e-82 265
MS.gene013077.t1 MTR_4g132590 35.776 464 271 14 28 471 38 494 4.08e-82 262
MS.gene013077.t1 MTR_6g016015 35.664 429 228 10 53 468 114 507 4.27e-82 263
MS.gene013077.t1 MTR_4g132590 35.776 464 271 14 28 471 137 593 6.33e-81 262
MS.gene013077.t1 MTR_4g125460 34.490 461 247 12 26 471 60 480 1.68e-79 255
MS.gene013077.t1 MTR_3g096020 34.839 465 237 9 29 469 164 586 3.27e-78 255
MS.gene013077.t1 MTR_1g102030 34.542 469 252 14 20 471 54 484 5.56e-78 252
MS.gene013077.t1 MTR_4g125460 34.934 458 245 12 26 469 199 617 6.31e-78 255
MS.gene013077.t1 MTR_4g100810 35.915 426 232 12 48 469 101 489 9.83e-78 252
MS.gene013077.t1 MTR_3g115220 34.744 449 248 12 28 469 82 492 7.78e-77 251
MS.gene013077.t1 MTR_3g086570 39.009 323 167 7 37 352 129 428 1.37e-76 246
MS.gene013077.t1 MTR_4g019210 32.308 455 255 10 29 469 206 621 4.51e-73 243
MS.gene013077.t1 MTR_5g012770 35.831 427 222 13 47 469 116 494 8.97e-72 236
MS.gene013077.t1 MTR_5g081690 33.643 431 232 11 54 470 121 511 9.55e-71 234
MS.gene013077.t1 MTR_4g023030 33.857 446 242 10 37 469 211 616 2.14e-68 230
MS.gene013077.t1 MTR_3g026650 33.333 459 247 9 27 469 141 556 3.05e-68 228
MS.gene013077.t1 MTR_3g026650 32.995 394 198 7 27 402 141 486 1.31e-53 187
MS.gene013077.t1 MTR_4g010990 29.360 453 252 14 26 469 45 438 6.96e-49 174
MS.gene013077.t1 MTR_1g101990 34.628 309 168 8 168 471 1 280 4.09e-48 168
MS.gene013077.t1 MTR_4g010990 28.960 404 221 13 73 469 5 349 5.20e-39 145
MS.gene013077.t1 MTR_3g026650 30.945 307 146 7 27 315 141 399 1.25e-35 137
MS.gene013077.t1 MTR_3g092590 29.429 333 189 10 52 371 88 387 1.70e-33 133
MS.gene013077.t1 MTR_3g092590 29.429 333 189 10 52 371 88 387 4.89e-33 132
MS.gene013077.t1 MTR_7g017330 28.319 339 195 7 48 372 92 396 1.15e-29 122
MS.gene013077.t1 MTR_1g007390 29.236 301 167 10 82 369 124 391 7.49e-27 114
MS.gene013077.t1 MTR_7g064210 35.052 194 93 5 179 364 27 195 3.84e-25 107
MS.gene013077.t1 MTR_1g101985 45.545 101 54 1 29 128 62 162 2.96e-24 99.8
MS.gene013077.t1 MTR_2g038320 25.333 375 210 10 36 406 74 382 2.98e-23 102
MS.gene013077.t1 MTR_4g008200 25.064 391 221 14 21 406 4 327 6.23e-23 100
MS.gene013077.t1 MTR_4g008200 25.064 391 221 14 21 406 55 378 1.73e-22 99.8
MS.gene013077.t1 MTR_3g077710 55.072 69 12 1 259 327 4 53 9.72e-16 72.4
MS.gene013077.t1 MTR_8g017030 52.381 63 10 1 260 322 5 47 8.47e-13 64.3
MS.gene013077.t1 MTR_1g095680 40.217 92 43 2 195 286 16 95 2.87e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013077.t1 AT4G24530 75.745 470 114 0 1 470 48 517 0.0 759
MS.gene013077.t1 AT5G65470 73.461 471 121 2 1 469 34 502 0.0 732
MS.gene013077.t1 AT1G35510 38.612 461 242 10 21 470 127 557 1.09e-100 313
MS.gene013077.t1 AT3G26370 35.099 453 250 8 34 471 134 557 9.23e-98 305
MS.gene013077.t1 AT2G01480 37.174 460 250 13 21 470 122 552 2.27e-97 304
MS.gene013077.t1 AT1G14970 37.556 450 237 12 34 470 15 433 8.05e-95 294
MS.gene013077.t1 AT1G14970 36.402 478 258 14 7 470 108 553 3.92e-94 296
MS.gene013077.t1 AT1G38065 38.747 431 221 10 54 469 26 428 1.56e-93 291
MS.gene013077.t1 AT1G38065 38.747 431 221 10 54 469 36 438 1.92e-93 291
MS.gene013077.t1 AT1G29200 39.024 451 251 10 38 470 50 494 2.46e-93 291
MS.gene013077.t1 AT1G29200 39.024 451 251 10 38 470 50 494 2.46e-93 291
MS.gene013077.t1 AT1G14970 37.383 428 228 9 54 470 9 407 9.78e-93 287
MS.gene013077.t1 AT1G38131 38.747 431 221 10 54 469 155 557 4.71e-92 291
MS.gene013077.t1 AT1G29200 39.024 451 251 10 38 470 166 610 8.81e-92 291
MS.gene013077.t1 AT1G29200 39.100 422 237 9 63 470 5 420 6.66e-89 278
MS.gene013077.t1 AT1G62330 36.717 463 259 13 26 469 202 649 7.67e-88 282
MS.gene013077.t1 AT1G22460 33.333 462 250 7 29 470 135 558 7.85e-86 274
MS.gene013077.t1 AT2G01480 36.597 429 236 11 21 441 122 522 1.10e-85 273
MS.gene013077.t1 AT3G02250 34.542 469 243 12 29 468 65 498 4.55e-85 271
MS.gene013077.t1 AT4G38390 37.410 417 224 9 57 471 126 507 1.49e-84 270
MS.gene013077.t1 AT5G15740 33.902 469 246 12 29 468 65 498 4.37e-84 268
MS.gene013077.t1 AT1G20550 37.674 430 222 12 45 469 101 489 2.19e-83 268
MS.gene013077.t1 AT1G11990 35.957 470 270 12 28 471 148 612 2.69e-83 269
MS.gene013077.t1 AT1G11990 36.184 456 251 11 28 471 163 590 2.72e-83 268
MS.gene013077.t1 AT5G64600 35.118 467 237 9 27 469 90 514 8.76e-83 265
MS.gene013077.t1 AT1G14020 37.296 429 220 10 54 469 91 483 5.12e-82 262
MS.gene013077.t1 AT1G76270 36.830 429 225 12 46 469 99 486 5.14e-81 262
MS.gene013077.t1 AT1G04910 34.490 461 255 13 19 470 53 475 9.44e-81 259
MS.gene013077.t1 AT2G03280 37.529 429 218 11 54 468 88 480 1.73e-80 258
MS.gene013077.t1 AT2G37980 33.991 456 246 12 29 469 200 615 1.33e-78 257
MS.gene013077.t1 AT5G35570 32.563 476 270 10 7 469 203 640 5.38e-75 248
MS.gene013077.t1 AT3G54100 32.308 455 255 10 29 469 196 611 1.13e-74 247
MS.gene013077.t1 AT4G16650 35.924 476 256 16 1 470 72 504 1.73e-74 244
MS.gene013077.t1 AT4G16650 35.924 476 256 16 1 470 72 504 1.73e-74 244
MS.gene013077.t1 AT2G03280 35.307 456 218 12 54 468 88 507 1.96e-74 243
MS.gene013077.t1 AT2G44500 34.437 453 255 7 25 469 143 561 3.54e-72 239
MS.gene013077.t1 AT5G01100 31.510 457 258 10 29 469 191 608 6.30e-71 237
MS.gene013077.t1 AT3G07900 31.510 457 257 8 28 469 157 572 3.96e-68 228
MS.gene013077.t1 AT5G63390 32.314 458 264 8 23 470 128 549 2.68e-66 223
MS.gene013077.t1 AT3G26370 37.828 267 129 5 34 291 134 372 7.30e-60 201
MS.gene013077.t1 AT1G52630 27.938 451 259 15 27 470 45 436 4.90e-50 176
MS.gene013077.t1 AT1G52630 27.114 402 229 14 73 469 5 347 7.39e-40 147
MS.gene013077.t1 AT2G44500 32.770 296 160 5 25 315 143 404 2.39e-39 147
MS.gene013077.t1 AT3G03810 29.333 375 205 13 28 381 61 396 1.40e-36 143
MS.gene013077.t1 AT3G03810 29.333 375 205 13 28 381 61 396 1.40e-36 143
MS.gene013077.t1 AT3G30300 28.829 333 199 7 51 374 97 400 2.03e-31 128
MS.gene013077.t1 AT3G30300 28.829 333 199 7 51 374 97 400 2.03e-31 128
MS.gene013077.t1 AT3G21190 25.490 357 197 9 54 406 90 381 4.16e-21 95.9
MS.gene013077.t1 AT1G51630 24.930 357 199 9 54 406 91 382 7.25e-21 95.1

Find 107 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCCATTCAGCTTGTGATTT+TGG 0.068002 3.2:+83530782 MS.gene013077:CDS
CAGACCAAACATGGCACTTT+TGG 0.192496 3.2:+83531553 MS.gene013077:CDS
TTGCACTCACAAGGTGAATT+TGG 0.192542 3.2:-83527729 None:intergenic
GTTCCACACGTTAAGGAATT+AGG 0.206831 3.2:+83529952 MS.gene013077:CDS
GGATTGCTTCTAGCTGCTTT+GGG 0.237021 3.2:+83530938 MS.gene013077:CDS
TCAACTCTTCATCATTGAAT+TGG 0.253038 3.2:-83530877 None:intergenic
TTGCTGTTTCCCAAGCTTAT+CGG 0.280991 3.2:-83530052 None:intergenic
TGGATTGCTTCTAGCTGCTT+TGG 0.294168 3.2:+83530937 MS.gene013077:CDS
CATCTTCATTTCGGCTTCTC+CGG 0.300796 3.2:+83531330 MS.gene013077:CDS
CTAAATACCGGCAGGTGATT+TGG 0.320489 3.2:+83530834 MS.gene013077:CDS
CAACTCTTCATCATTGAATT+GGG 0.327093 3.2:-83530876 None:intergenic
GAGACAATGGCCAAAGTTAA+TGG 0.337935 3.2:+83531256 MS.gene013077:CDS
GCACAGCGACATCTTCATTT+CGG 0.365352 3.2:+83531321 MS.gene013077:CDS
AGAAGCAATCCAATCTCTTC+GGG 0.388321 3.2:-83530926 None:intergenic
AGCTTCCTGGTGAGTACTCT+TGG 0.391715 3.2:+83528540 MS.gene013077:CDS
GAACTTTGTTCCACACGTTA+AGG 0.393106 3.2:+83529945 MS.gene013077:CDS
CGGTACAAGGTTTCCATCCT+TGG 0.393966 3.2:-83527701 None:intergenic
TTTCAGCGTGCGGTTCTTGA+TGG 0.397111 3.2:+83531614 MS.gene013077:CDS
ACCAAAATCACAAGCTGAAT+GGG 0.400153 3.2:-83530783 None:intergenic
TGATGAAGAGTTGAGAAATC+AGG 0.404730 3.2:+83530886 MS.gene013077:CDS
GTATACAGAAAATGTATTGC+CGG 0.409053 3.2:+83528640 MS.gene013077:CDS
CGATGCCTTTCCATTAACTT+TGG 0.411811 3.2:-83531266 None:intergenic
CACCAAAATCACAAGCTGAA+TGG 0.427593 3.2:-83530784 None:intergenic
AGCGCTGCCCGAAAAGTCTC+GGG 0.432285 3.2:+83527850 MS.gene013077:intron
TAGAAGCAATCCAATCTCTT+CGG 0.438821 3.2:-83530927 None:intergenic
TACCTTGAATCTTGCCAGAC+AGG 0.439319 3.2:-83528362 None:intergenic
TTCACATACCTCTGAAGAAC+CGG 0.439622 3.2:-83528659 None:intergenic
ATCTTCATTTCGGCTTCTCC+GGG 0.439681 3.2:+83531331 MS.gene013077:CDS
CCAAGCTTATCGGCTTCCTC+TGG 0.444477 3.2:-83530042 None:intergenic
CATCCAGCGTCTCCGTTGTA+AGG 0.448928 3.2:+83529906 MS.gene013077:CDS
CCACTGACTCCCGAAGAGAT+TGG 0.458973 3.2:+83530917 MS.gene013077:CDS
AATGTGACGTGTCTAGGTTT+AGG 0.460189 3.2:-83527440 None:intergenic
CTCCCTTGGCTTACCAAGGA+TGG 0.461393 3.2:+83527688 MS.gene013077:CDS
TCTATAGTGAAAGAGCTTCC+TGG 0.462447 3.2:+83528527 MS.gene013077:CDS
GAATTTGGAGGCACGGTACA+AGG 0.465090 3.2:-83527714 None:intergenic
ATCCTGTCTGGCAAGATTCA+AGG 0.465671 3.2:+83528360 MS.gene013077:CDS
TGGCCCAAAAGTGCCATGTT+TGG 0.467421 3.2:-83531557 None:intergenic
AATAGTCATTTGATTCTGCT+TGG 0.470389 3.2:-83530017 None:intergenic
CAATCTGCGGTAGCATGAAC+TGG 0.471934 3.2:-83528617 None:intergenic
CCAGAGGAAGCCGATAAGCT+TGG 0.472576 3.2:+83530042 MS.gene013077:CDS
AGGTTTATGGTGGAAAAGCT+AGG 0.473316 3.2:+83531173 MS.gene013077:intron
CACTCACAAGGTGAATTTGG+AGG 0.474199 3.2:-83527726 None:intergenic
TGCTCTTATTCTGAAATAGC+TGG 0.476445 3.2:-83531577 None:intergenic
CTACACATGCAATCAGGAGC+AGG 0.479880 3.2:-83531698 None:intergenic
CAGCGCTGCCCGAAAAGTCT+CGG 0.480836 3.2:+83527849 MS.gene013077:intron
CAGAGGAAGCCGATAAGCTT+GGG 0.483277 3.2:+83530043 MS.gene013077:CDS
ATACCGGCAGGTGATTTGGC+AGG 0.495911 3.2:+83530838 MS.gene013077:CDS
GGATTGAACCAGCAGAAGAT+GGG 0.496714 3.2:+83527899 MS.gene013077:CDS
TCTCATCGCTTGACATTCAA+CGG 0.499133 3.2:+83529871 MS.gene013077:CDS
AGGATTGAACCAGCAGAAGA+TGG 0.499974 3.2:+83527898 MS.gene013077:CDS
TTATGGTGGAAAAGCTAGGT+TGG 0.500381 3.2:+83531177 MS.gene013077:CDS
AACCAATCTGTGGTCTCCCT+TGG 0.504923 3.2:+83527674 MS.gene013077:CDS
TGTAGCAATGTGACGTGTCT+AGG 0.506331 3.2:-83527446 None:intergenic
TAAGCTCTACACATGCAATC+AGG 0.507747 3.2:-83531704 None:intergenic
TAGACACGTCACATTGCTAC+AGG 0.507958 3.2:+83527448 MS.gene013077:CDS
GGGCAATATGCACAATGCTC+TGG 0.515544 3.2:+83531351 MS.gene013077:CDS
AGCTTGGGAAACAGCAAAGC+GGG 0.516102 3.2:+83530058 MS.gene013077:CDS
GGGACAGATAAGATTAAGAA+AGG 0.523765 3.2:+83531652 MS.gene013077:CDS
AGCTGGGCAATAAACCTTGT+GGG 0.537721 3.2:-83530993 None:intergenic
TGCTCTAGCTAAATACCGGC+AGG 0.538557 3.2:+83530826 MS.gene013077:CDS
AACTTGCTCTAGCTAAATAC+CGG 0.541940 3.2:+83530822 MS.gene013077:CDS
GATGAAGAGTTGAGAAATCA+GGG 0.542902 3.2:+83530887 MS.gene013077:CDS
TTCCCTGCCAAATCACCTGC+CGG 0.544202 3.2:-83530841 None:intergenic
GATTGCTTCTAGCTGCTTTG+GGG 0.545630 3.2:+83530939 MS.gene013077:CDS
TTTCCATCCTTGGTAAGCCA+AGG 0.550395 3.2:-83527691 None:intergenic
CCAATCTCTTCGGGAGTCAG+TGG 0.550645 3.2:-83530917 None:intergenic
AGCCAAGGGAGACCACAGAT+TGG 0.555485 3.2:-83527676 None:intergenic
TGGTCTCCCTTGGCTTACCA+AGG 0.559168 3.2:+83527684 MS.gene013077:CDS
AGAGCATTGTGCATATTGCC+CGG 0.559884 3.2:-83531349 None:intergenic
CAGGATTCACTTCAAAATGC+GGG 0.561562 3.2:-83528343 None:intergenic
GTGCTCCAAGAGTACTCACC+AGG 0.562409 3.2:-83528545 None:intergenic
CAGTTCATGCTACCGCAGAT+TGG 0.569656 3.2:+83528618 MS.gene013077:CDS
TGATGGACATAAGAACAGAC+AGG 0.569668 3.2:+83531631 MS.gene013077:CDS
TGACCTTACAACGGAGACGC+TGG 0.575199 3.2:-83529909 None:intergenic
TTCCATCCTTGGTAAGCCAA+GGG 0.578859 3.2:-83527690 None:intergenic
GCTGGTTCAATCCTCCATCA+AGG 0.585087 3.2:-83527889 None:intergenic
ATGTATTGCCGGTTCTTCAG+AGG 0.591620 3.2:+83528651 MS.gene013077:CDS
TCTAGTCTCTGCAGAGACAA+TGG 0.592187 3.2:+83531243 MS.gene013077:CDS
CGGAGACGCTGGATGTCTGA+TGG 0.599897 3.2:-83529898 None:intergenic
ACAAGAGAGTACTATGCCAC+AGG 0.599956 3.2:+83528566 MS.gene013077:CDS
TTCAGAATAAGAGCATAGGC+TGG 0.602241 3.2:+83531585 MS.gene013077:CDS
GAAGACTATCAGACCAAACA+TGG 0.603497 3.2:+83531544 MS.gene013077:CDS
GATTGAACCAGCAGAAGATG+GGG 0.605571 3.2:+83527900 MS.gene013077:CDS
TCTCCTAATTCCTTAACGTG+TGG 0.606004 3.2:-83529955 None:intergenic
AATGTCAAGCGATGAGAGAA+CGG 0.606541 3.2:-83529865 None:intergenic
TACCGGCAGGTGATTTGGCA+GGG 0.608982 3.2:+83530839 MS.gene013077:CDS
CTATTTCAGAATAAGAGCAT+AGG 0.610443 3.2:+83531581 MS.gene013077:CDS
CTGGTCAGAATTTCAGCGTG+CGG 0.613267 3.2:+83531604 MS.gene013077:CDS
GCGATGAGAGAACGGTGCAA+TGG 0.614616 3.2:-83529857 None:intergenic
TGTAGCGAAGACGCTGAACA+AGG 0.614908 3.2:-83529981 None:intergenic
ACTTTATCTTGCTTCCCACA+AGG 0.615688 3.2:+83530979 MS.gene013077:CDS
CAATCTCTTCGGGAGTCAGT+GGG 0.624514 3.2:-83530916 None:intergenic
AATGGCCAAAGTTAATGGAA+AGG 0.628911 3.2:+83531261 MS.gene013077:CDS
ACAAGGTGAATTTGGAGGCA+CGG 0.632017 3.2:-83527721 None:intergenic
TTGAAGTACAAACCAATCTG+TGG 0.642304 3.2:+83527664 MS.gene013077:CDS
TACACATGCAATCAGGAGCA+GGG 0.643795 3.2:-83531697 None:intergenic
ACAGGATTCACTTCAAAATG+CGG 0.644514 3.2:-83528344 None:intergenic
TCTAGTAGCTCTAATGCCTG+TGG 0.656159 3.2:-83528582 None:intergenic
TCACTATAGATACTTCGTCA+CGG 0.662049 3.2:-83528514 None:intergenic
ATCAAATGACTATTTGCCAG+AGG 0.666329 3.2:+83530026 MS.gene013077:CDS
AGACACGTCACATTGCTACA+GGG 0.677204 3.2:+83527449 MS.gene013077:CDS
GCGCTGCCCGAAAAGTCTCG+GGG 0.696935 3.2:+83527851 MS.gene013077:intron
CTTCAAAGTTGACCTTACAA+CGG 0.697428 3.2:-83529918 None:intergenic
ATTGAACCAGCAGAAGATGG+GGG 0.706327 3.2:+83527901 MS.gene013077:CDS
GATGGACATAAGAACAGACA+GGG 0.720717 3.2:+83531632 MS.gene013077:CDS
ATGAAGAGTTGAGAAATCAG+GGG 0.726296 3.2:+83530888 MS.gene013077:CDS
AAGCTTGGGAAACAGCAAAG+CGG 0.733658 3.2:+83530057 MS.gene013077:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAAAAATTGAAAAATTAT+TGG - chr3.2:83530319-83530338 None:intergenic 10.0%
!!! TAAATTGTCATTTATATAAT+TGG - chr3.2:83530698-83530717 None:intergenic 10.0%
!!! TTATTTTTCTATTAAAATTC+AGG + chr3.2:83527771-83527790 MS.gene013077:intron 10.0%
!! ATAAAAAATTGAAGACATAA+AGG - chr3.2:83528413-83528432 None:intergenic 15.0%
!! TAAAATTCTAAATATGCTTA+CGG + chr3.2:83529728-83529747 MS.gene013077:intron 15.0%
!! TCTAAGAAAGAAAAATTATT+TGG + chr3.2:83529381-83529400 MS.gene013077:intron 15.0%
!! TTTAGATAAAATAGAGTATA+AGG - chr3.2:83528095-83528114 None:intergenic 15.0%
!!! ATCTTTTAAATAGAAAATGT+GGG - chr3.2:83528275-83528294 None:intergenic 15.0%
!!! ATGTTTTTTTCAGAAAATTA+AGG + chr3.2:83530717-83530736 MS.gene013077:intron 15.0%
!!! TATCTTTTAAATAGAAAATG+TGG - chr3.2:83528276-83528295 None:intergenic 15.0%
!!! TATTATTTATATAGCTTGTT+TGG - chr3.2:83529142-83529161 None:intergenic 15.0%
!!! TATTTTCAGTTATTTTCTAT+AGG - chr3.2:83529062-83529081 None:intergenic 15.0%
!! AAAACCTACAAATTATATCA+TGG - chr3.2:83528807-83528826 None:intergenic 20.0%
!! AAAGGTAATTAATACTTCAT+TGG - chr3.2:83528058-83528077 None:intergenic 20.0%
!! AAATAACAACTCAGTATAAA+TGG - chr3.2:83528441-83528460 None:intergenic 20.0%
!! ACAGTTTAAGAAAAAATTCT+GGG + chr3.2:83528925-83528944 MS.gene013077:intron 20.0%
!! AGTTGTTAGATTGAAAAATA+TGG - chr3.2:83529235-83529254 None:intergenic 20.0%
!! ATTAAAATAACACATACGAT+CGG - chr3.2:83527562-83527581 None:intergenic 20.0%
!! ATTTATATAATTGGATCACA+AGG - chr3.2:83530689-83530708 None:intergenic 20.0%
!! TAATCCATTGGAAAAAAATA+AGG + chr3.2:83528900-83528919 MS.gene013077:intron 20.0%
!! TGATAACAAACAAAGAAAAT+AGG - chr3.2:83529312-83529331 None:intergenic 20.0%
!! TGATTAGAATATGTCTTTAA+AGG - chr3.2:83528234-83528253 None:intergenic 20.0%
!! TGTGATATTTATAAGAATGA+AGG - chr3.2:83529684-83529703 None:intergenic 20.0%
!! TTAGATTGAAAAATATGGAT+GGG - chr3.2:83529230-83529249 None:intergenic 20.0%
!!! ATTCTATGTTTTTAGGTTTA+TGG + chr3.2:83531160-83531179 MS.gene013077:intron 20.0%
!!! ATTTCCATGATATAATTTGT+AGG + chr3.2:83528800-83528819 MS.gene013077:intron 20.0%
!!! TAAAATTTTGAATGTAACGT+TGG + chr3.2:83528316-83528335 MS.gene013077:CDS 20.0%
!!! TAAATGAGATTGTTTTGAAA+GGG + chr3.2:83527928-83527947 MS.gene013077:intron 20.0%
!!! TATGTGCAATTTTTTGTTTT+AGG + chr3.2:83529469-83529488 MS.gene013077:intron 20.0%
!!! TCAACACATTTTCTATATAA+TGG - chr3.2:83528747-83528766 None:intergenic 20.0%
! AATCTACAACATTTGAAAAC+AGG - chr3.2:83529808-83529827 None:intergenic 25.0%
! AATTTCATTGCAGAAATGAA+GGG + chr3.2:83527954-83527973 MS.gene013077:intron 25.0%
! ATTATTGTCTCATAATCCAT+TGG + chr3.2:83528888-83528907 MS.gene013077:intron 25.0%
! CGTAAATAATGCATATCTAA+AGG - chr3.2:83529779-83529798 None:intergenic 25.0%
! CTATTTGAGTCAATAAACTA+TGG - chr3.2:83529339-83529358 None:intergenic 25.0%
! GACAGTTTAAGAAAAAATTC+TGG + chr3.2:83528924-83528943 MS.gene013077:intron 25.0%
! GATTATGAGACAATAATTGA+TGG - chr3.2:83528885-83528904 None:intergenic 25.0%
! GGGAAAAAAATTACAGTTTA+AGG + chr3.2:83529027-83529046 MS.gene013077:intron 25.0%
! GTTAGATTGAAAAATATGGA+TGG - chr3.2:83529231-83529250 None:intergenic 25.0%
! TAATTTCATTGCAGAAATGA+AGG + chr3.2:83527953-83527972 MS.gene013077:intron 25.0%
! TGTGATTACAGTATTATAAG+CGG + chr3.2:83530203-83530222 MS.gene013077:intron 25.0%
! TTTCTATTAACTGCAGTTTA+AGG + chr3.2:83530638-83530657 MS.gene013077:intron 25.0%
!! ATGTGTTTAAAATTTGAACG+AGG + chr3.2:83530539-83530558 MS.gene013077:intron 25.0%
!! ATTTTTCTTTCTTAGATCCT+AGG - chr3.2:83529377-83529396 None:intergenic 25.0%
!! CAAAAGATGTTTGGTTTAAA+CGG - chr3.2:83531489-83531508 None:intergenic 25.0%
!! CTTGTCTTTCTAATTTTACT+TGG + chr3.2:83530162-83530181 MS.gene013077:intron 25.0%
!! CTTTTCTTATCTTCCATAAA+AGG - chr3.2:83531223-83531242 None:intergenic 25.0%
!! TGGTTTAAACGGTAAATTTT+GGG - chr3.2:83531478-83531497 None:intergenic 25.0%
!! TTGGTTTAAACGGTAAATTT+TGG - chr3.2:83531479-83531498 None:intergenic 25.0%
!!! AAAATTATTTGGTTCTTCCA+AGG + chr3.2:83529392-83529411 MS.gene013077:intron 25.0%
!!! GTAAATGAGATTGTTTTGAA+AGG + chr3.2:83527927-83527946 MS.gene013077:intron 25.0%
!!! GTCTGTTTTAAATACCTTTT+AGG + chr3.2:83530448-83530467 MS.gene013077:intron 25.0%
!!! TATATTCAAGTTTTCCTTGA+TGG + chr3.2:83527875-83527894 MS.gene013077:CDS 25.0%
!!! TGGATTGATTCTATGTTTTT+AGG + chr3.2:83531153-83531172 MS.gene013077:intron 25.0%
!!! TGTTTTAATAACTCCACATA+TGG + chr3.2:83529612-83529631 MS.gene013077:intron 25.0%
AAAACCTAAATGCATTTCAG+GGG - chr3.2:83528723-83528742 None:intergenic 30.0%
AACTATGTAAATTCCAACCT+TGG - chr3.2:83529444-83529463 None:intergenic 30.0%
AAGGATATATCAGTGGAAAA+AGG - chr3.2:83528076-83528095 None:intergenic 30.0%
AATAGTCATTTGATTCTGCT+TGG - chr3.2:83530020-83530039 None:intergenic 30.0%
AATGCTTCCAATACAATTGA+CGG + chr3.2:83527587-83527606 MS.gene013077:intron 30.0%
ACATGACACTTAATATGAGA+CGG - chr3.2:83528001-83528020 None:intergenic 30.0%
ACTATGTAAATTCCAACCTT+GGG - chr3.2:83529443-83529462 None:intergenic 30.0%
AGAGTATAAGGATATATCAG+TGG - chr3.2:83528083-83528102 None:intergenic 30.0%
ATCATGGAAATCCATTGTAA+GGG - chr3.2:83528791-83528810 None:intergenic 30.0%
ATTCAAGGTATATCTAGTGT+GGG + chr3.2:83528375-83528394 MS.gene013077:intron 30.0%
CAAAACCTAAATGCATTTCA+GGG - chr3.2:83528724-83528743 None:intergenic 30.0%
CAACTCTTCATCATTGAATT+GGG - chr3.2:83530879-83530898 None:intergenic 30.0%
CTCATATTAAGTGTCATGTT+TGG + chr3.2:83528002-83528021 MS.gene013077:intron 30.0%
GCCAGGATTCAAAAAATTAT+GGG + chr3.2:83530136-83530155 MS.gene013077:intron 30.0%
GTATACAGAAAATGTATTGC+CGG + chr3.2:83528640-83528659 MS.gene013077:CDS 30.0%
GTTTAAGAAAAAATTCTGGG+TGG + chr3.2:83528928-83528947 MS.gene013077:intron 30.0%
TATAACCAGAACTCTACAAT+AGG - chr3.2:83530574-83530593 None:intergenic 30.0%
TATCATGGAAATCCATTGTA+AGG - chr3.2:83528792-83528811 None:intergenic 30.0%
TCAACTCTTCATCATTGAAT+TGG - chr3.2:83530880-83530899 None:intergenic 30.0%
TGCCAGGATTCAAAAAATTA+TGG + chr3.2:83530135-83530154 MS.gene013077:intron 30.0%
TTAAGGCTCCTGTTAATTAA+TGG + chr3.2:83530734-83530753 MS.gene013077:intron 30.0%
! ATTGACTCAAATAGTTGTCA+GGG + chr3.2:83529345-83529364 MS.gene013077:intron 30.0%
! ATTTTCTGTATACCAATCTG+CGG - chr3.2:83528633-83528652 None:intergenic 30.0%
! CTATTTCAGAATAAGAGCAT+AGG + chr3.2:83531581-83531600 MS.gene013077:CDS 30.0%
! GGTTTAAACGGTAAATTTTG+GGG - chr3.2:83531477-83531496 None:intergenic 30.0%
! TTTTCTCGTTGATACAGTTA+TGG + chr3.2:83529826-83529845 MS.gene013077:intron 30.0%
!! AAAAACAACACTGACTTGAT+TGG - chr3.2:83529006-83529025 None:intergenic 30.0%
!! AAGCACGTTATTTCCTTTTA+TGG + chr3.2:83531207-83531226 MS.gene013077:CDS 30.0%
!! GTTTACTTTTGAACTTAGTC+TGG + chr3.2:83531133-83531152 MS.gene013077:intron 30.0%
!! TAAGCGGAATATAGTTTGTT+AGG + chr3.2:83530219-83530238 MS.gene013077:intron 30.0%
!! TATTGACTCAAATAGTTGTC+AGG + chr3.2:83529344-83529363 MS.gene013077:intron 30.0%
!!! ACCCATAATTTTTTGAATCC+TGG - chr3.2:83530140-83530159 None:intergenic 30.0%
!!! ATCAAGTCAGTGTTGTTTTT+TGG + chr3.2:83529006-83529025 MS.gene013077:intron 30.0%
!!! CTATGTTTTTAGGTTTATGG+TGG + chr3.2:83531163-83531182 MS.gene013077:intron 30.0%
!!! GTCTCCTTATTTTTTTCCAA+TGG - chr3.2:83528907-83528926 None:intergenic 30.0%
!!! TCAAGTCAGTGTTGTTTTTT+GGG + chr3.2:83529007-83529026 MS.gene013077:intron 30.0%
AAAACTTCCCACATAATCCT+TGG - chr3.2:83529412-83529431 None:intergenic 35.0%
AAACCTAAATGCATTTCAGG+GGG - chr3.2:83528722-83528741 None:intergenic 35.0%
AACAACTCAGTATAAATGGC+TGG - chr3.2:83528437-83528456 None:intergenic 35.0%
AAGCTGTAGTTACACCTAAA+AGG - chr3.2:83530465-83530484 None:intergenic 35.0%
AATATATCCTGTCATGAGCT+GGG - chr3.2:83531012-83531031 None:intergenic 35.0%
AATGGCCAAAGTTAATGGAA+AGG + chr3.2:83531261-83531280 MS.gene013077:CDS 35.0%
ACAGGATTCACTTCAAAATG+CGG - chr3.2:83528347-83528366 None:intergenic 35.0%
ACCAAAATCACAAGCTGAAT+GGG - chr3.2:83530786-83530805 None:intergenic 35.0%
AGTGTAATGTACTCACAGTT+CGG - chr3.2:83527487-83527506 None:intergenic 35.0%
ATCAAATGACTATTTGCCAG+AGG + chr3.2:83530026-83530045 MS.gene013077:CDS 35.0%
ATCTAAAGGAAGACACTAAG+TGG - chr3.2:83529765-83529784 None:intergenic 35.0%
ATCTATTAAGACGATGCACT+AGG + chr3.2:83528960-83528979 MS.gene013077:intron 35.0%
ATGAAGAGTTGAGAAATCAG+GGG + chr3.2:83530888-83530907 MS.gene013077:CDS 35.0%
ATGACACTTAATATGAGACG+GGG - chr3.2:83527999-83528018 None:intergenic 35.0%
CACTGATGCTTCTACATAAA+AGG + chr3.2:83530417-83530436 MS.gene013077:intron 35.0%
CATGACACTTAATATGAGAC+GGG - chr3.2:83528000-83528019 None:intergenic 35.0%
CTGAAGATGCAAAAGATGTT+TGG - chr3.2:83531498-83531517 None:intergenic 35.0%
CTTCAAAGTTGACCTTACAA+CGG - chr3.2:83529921-83529940 None:intergenic 35.0%
GATGAAGAGTTGAGAAATCA+GGG + chr3.2:83530887-83530906 MS.gene013077:CDS 35.0%
GATTCAAGGTATATCTAGTG+TGG + chr3.2:83528374-83528393 MS.gene013077:intron 35.0%
GCAAAACCTAAATGCATTTC+AGG - chr3.2:83528725-83528744 None:intergenic 35.0%
GGGACAGATAAGATTAAGAA+AGG + chr3.2:83531652-83531671 MS.gene013077:CDS 35.0%
GTCAGTGACCATTAATTAAC+AGG - chr3.2:83530745-83530764 None:intergenic 35.0%
TACAGCACTACATTAGAACT+AGG - chr3.2:83529507-83529526 None:intergenic 35.0%
TAGAAGCAATCCAATCTCTT+CGG - chr3.2:83530930-83530949 None:intergenic 35.0%
TCACTATAGATACTTCGTCA+CGG - chr3.2:83528517-83528536 None:intergenic 35.0%
TGAGTGCAAATCTGCATAAT+TGG + chr3.2:83527743-83527762 MS.gene013077:intron 35.0%
TGATGAAGAGTTGAGAAATC+AGG + chr3.2:83530886-83530905 MS.gene013077:CDS 35.0%
TTGAAGTACAAACCAATCTG+TGG + chr3.2:83527664-83527683 MS.gene013077:CDS 35.0%
TTGACTCAAATAGTTGTCAG+GGG + chr3.2:83529346-83529365 MS.gene013077:intron 35.0%
TTGTACACCGTCAATTGTAT+TGG - chr3.2:83527597-83527616 None:intergenic 35.0%
! AACTTGCTCTAGCTAAATAC+CGG + chr3.2:83530822-83530841 MS.gene013077:CDS 35.0%
! AATATAACCCCGAGACTTTT+CGG - chr3.2:83527861-83527880 None:intergenic 35.0%
! ACAAAGGTATAATACTGTGC+TGG - chr3.2:83529171-83529190 None:intergenic 35.0%
! CAAACATCTTTTGCATCTTC+AGG + chr3.2:83531496-83531515 MS.gene013077:intron 35.0%
!! ATTCAAGTTTTCCTTGATGG+AGG + chr3.2:83527878-83527897 MS.gene013077:CDS 35.0%
!! ATTCAGCTTGTGATTTTGGT+GGG + chr3.2:83530786-83530805 MS.gene013077:CDS 35.0%
!! TGCTCTTATTCTGAAATAGC+TGG - chr3.2:83531580-83531599 None:intergenic 35.0%
!!! AGGACTGTTTTGTTTGTCAT+TGG + chr3.2:83527791-83527810 MS.gene013077:intron 35.0%
!!! ATTTTGAAGTGAATCCTGTC+TGG + chr3.2:83528348-83528367 MS.gene013077:CDS 35.0%
!!! CTTTTATGTAGAAGCATCAG+TGG - chr3.2:83530419-83530438 None:intergenic 35.0%
AACCAGAACTCTACAATAGG+AGG - chr3.2:83530571-83530590 None:intergenic 40.0%
AATGTCAAGCGATGAGAGAA+CGG - chr3.2:83529868-83529887 None:intergenic 40.0%
AATGTGACGTGTCTAGGTTT+AGG - chr3.2:83527443-83527462 None:intergenic 40.0%
ACCTTCCCTAAATACTGCAA+TGG - chr3.2:83529539-83529558 None:intergenic 40.0%
ACTTAACCTCAAATTCTGCC+AGG + chr3.2:83528684-83528703 MS.gene013077:intron 40.0%
ACTTTATCTTGCTTCCCACA+AGG + chr3.2:83530979-83530998 MS.gene013077:CDS 40.0%
AGAAGCAATCCAATCTCTTC+GGG - chr3.2:83530929-83530948 None:intergenic 40.0%
ATAAGAATGAAGGTGAGCCT+TGG - chr3.2:83529674-83529693 None:intergenic 40.0%
ATCCTCCTATTGTAGAGTTC+TGG + chr3.2:83530566-83530585 MS.gene013077:intron 40.0%
CAATATATCCTGTCATGAGC+TGG - chr3.2:83531013-83531032 None:intergenic 40.0%
CACCAAAATCACAAGCTGAA+TGG - chr3.2:83530787-83530806 None:intergenic 40.0%
CAGCGCTGCAATAATCAAAA+GGG - chr3.2:83527837-83527856 None:intergenic 40.0%
CAGGATTCACTTCAAAATGC+GGG - chr3.2:83528346-83528365 None:intergenic 40.0%
CGATGCCTTTCCATTAACTT+TGG - chr3.2:83531269-83531288 None:intergenic 40.0%
CTCTTAGTGAACTTCCAAGT+AGG + chr3.2:83529263-83529282 MS.gene013077:intron 40.0%
GAACTTTGTTCCACACGTTA+AGG + chr3.2:83529945-83529964 MS.gene013077:CDS 40.0%
GAAGACTATCAGACCAAACA+TGG + chr3.2:83531544-83531563 MS.gene013077:CDS 40.0%
GAGACAATGGCCAAAGTTAA+TGG + chr3.2:83531256-83531275 MS.gene013077:CDS 40.0%
GATGGACATAAGAACAGACA+GGG + chr3.2:83531632-83531651 MS.gene013077:CDS 40.0%
GCCTTCCATTGCAGTATTTA+GGG + chr3.2:83529531-83529550 MS.gene013077:intron 40.0%
GCTAATACATTCACACACAC+AGG - chr3.2:83530511-83530530 None:intergenic 40.0%
GGTTCTTCCAAGGATTATGT+GGG + chr3.2:83529402-83529421 MS.gene013077:intron 40.0%
GTTCCACACGTTAAGGAATT+AGG + chr3.2:83529952-83529971 MS.gene013077:CDS 40.0%
TAAGCTCTACACATGCAATC+AGG - chr3.2:83531707-83531726 None:intergenic 40.0%
TAGGTGTAACTACAGCTTGA+AGG + chr3.2:83530467-83530486 MS.gene013077:intron 40.0%
TATGCAGATTTGCACTCACA+AGG - chr3.2:83527741-83527760 None:intergenic 40.0%
TCCATTGCAGTATTTAGGGA+AGG + chr3.2:83529535-83529554 MS.gene013077:intron 40.0%
TCCCTAAATACTGCAATGGA+AGG - chr3.2:83529535-83529554 None:intergenic 40.0%
TCTATAGTGAAAGAGCTTCC+TGG + chr3.2:83528527-83528546 MS.gene013077:CDS 40.0%
TCTCATCGCTTGACATTCAA+CGG + chr3.2:83529871-83529890 MS.gene013077:CDS 40.0%
TCTCCTAATTCCTTAACGTG+TGG - chr3.2:83529958-83529977 None:intergenic 40.0%
TGCCTTCCATTGCAGTATTT+AGG + chr3.2:83529530-83529549 MS.gene013077:intron 40.0%
TGGTTCTTCCAAGGATTATG+TGG + chr3.2:83529401-83529420 MS.gene013077:intron 40.0%
TGTATTGCTGCAAGACATGT+AGG + chr3.2:83531447-83531466 MS.gene013077:intron 40.0%
TTAGGCAACAACTTGCATGT+TGG + chr3.2:83530237-83530256 MS.gene013077:intron 40.0%
TTGCACTCACAAGGTGAATT+TGG - chr3.2:83527732-83527751 None:intergenic 40.0%
TTGCAGTATTTAGGGAAGGT+TGG + chr3.2:83529539-83529558 MS.gene013077:intron 40.0%
TTTCCCCCTGAAATGCATTT+AGG + chr3.2:83528716-83528735 MS.gene013077:intron 40.0%
TTTGCAACTAGCCCTTACAA+TGG + chr3.2:83528777-83528796 MS.gene013077:intron 40.0%
! AACAGTCTTTTGCAGATGTG+AGG - chr3.2:83529596-83529615 None:intergenic 40.0%
! ACATCTTTTGCATCTTCAGG+TGG + chr3.2:83531499-83531518 MS.gene013077:intron 40.0%
! AGACCAAACATGGCACTTTT+GGG + chr3.2:83531554-83531573 MS.gene013077:CDS 40.0%
! AGGTTTATGGTGGAAAAGCT+AGG + chr3.2:83531173-83531192 MS.gene013077:intron 40.0%
! ATATAACCCCGAGACTTTTC+GGG - chr3.2:83527860-83527879 None:intergenic 40.0%
! CATTCAGCTTGTGATTTTGG+TGG + chr3.2:83530785-83530804 MS.gene013077:CDS 40.0%
! GTCTTCATTTGCATTTTGCC+AGG + chr3.2:83530119-83530138 MS.gene013077:intron 40.0%
! TGATGGACATAAGAACAGAC+AGG + chr3.2:83531631-83531650 MS.gene013077:CDS 40.0%
! TTATGGTGGAAAAGCTAGGT+TGG + chr3.2:83531177-83531196 MS.gene013077:CDS 40.0%
! TTCACATACCTCTGAAGAAC+CGG - chr3.2:83528662-83528681 None:intergenic 40.0%
! TTCAGAATAAGAGCATAGGC+TGG + chr3.2:83531585-83531604 MS.gene013077:CDS 40.0%
!! TTCAGCTTGTGATTTTGGTG+GGG + chr3.2:83530787-83530806 MS.gene013077:CDS 40.0%
!! TTGCTGTTTCCCAAGCTTAT+CGG - chr3.2:83530055-83530074 None:intergenic 40.0%
AAGCTTGGGAAACAGCAAAG+CGG + chr3.2:83530057-83530076 MS.gene013077:CDS 45.0%
AATATGGATGGGTGACGTGA+CGG - chr3.2:83529219-83529238 None:intergenic 45.0%
ACAAGGTGAATTTGGAGGCA+CGG - chr3.2:83527724-83527743 None:intergenic 45.0%
AGACACGTCACATTGCTACA+GGG + chr3.2:83527449-83527468 MS.gene013077:CDS 45.0%
AGCTGGGCAATAAACCTTGT+GGG - chr3.2:83530996-83531015 None:intergenic 45.0%
AGGATTGAACCAGCAGAAGA+TGG + chr3.2:83527898-83527917 MS.gene013077:CDS 45.0%
AGTTGTCAGGGGATATACCT+AGG + chr3.2:83529357-83529376 MS.gene013077:intron 45.0%
ATCCTGTCTGGCAAGATTCA+AGG + chr3.2:83528360-83528379 MS.gene013077:CDS 45.0%
ATCTTCATTTCGGCTTCTCC+GGG + chr3.2:83531331-83531350 MS.gene013077:CDS 45.0%
ATTGAACCAGCAGAAGATGG+GGG + chr3.2:83527901-83527920 MS.gene013077:CDS 45.0%
CACTCACAAGGTGAATTTGG+AGG - chr3.2:83527729-83527748 None:intergenic 45.0%
CATCTTCATTTCGGCTTCTC+CGG + chr3.2:83531330-83531349 MS.gene013077:CDS 45.0%
CTAAATACCGGCAGGTGATT+TGG + chr3.2:83530834-83530853 MS.gene013077:CDS 45.0%
GATTGAACCAGCAGAAGATG+GGG + chr3.2:83527900-83527919 MS.gene013077:CDS 45.0%
GCACAGCGACATCTTCATTT+CGG + chr3.2:83531321-83531340 MS.gene013077:CDS 45.0%
GCAGCGCTGCAATAATCAAA+AGG - chr3.2:83527838-83527857 None:intergenic 45.0%
GCATTTCAGGGGGAAAATGA+GGG - chr3.2:83528712-83528731 None:intergenic 45.0%
GGAAGACACTAAGTGGCTTA+TGG - chr3.2:83529758-83529777 None:intergenic 45.0%
GGATTGAACCAGCAGAAGAT+GGG + chr3.2:83527899-83527918 MS.gene013077:CDS 45.0%
TAATGGTCACTGACATGTGC+AGG + chr3.2:83530751-83530770 MS.gene013077:intron 45.0%
TACACATGCAATCAGGAGCA+GGG - chr3.2:83531700-83531719 None:intergenic 45.0%
TACCTTGAATCTTGCCAGAC+AGG - chr3.2:83528365-83528384 None:intergenic 45.0%
TAGACACGTCACATTGCTAC+AGG + chr3.2:83527448-83527467 MS.gene013077:CDS 45.0%
TAGTGAACTTCCAAGTAGGC+AGG + chr3.2:83529267-83529286 MS.gene013077:intron 45.0%
TCACTGACATGTGCAGGATA+TGG + chr3.2:83530757-83530776 MS.gene013077:intron 45.0%
TCTAGTCTCTGCAGAGACAA+TGG + chr3.2:83531243-83531262 MS.gene013077:CDS 45.0%
TGCATTTCAGGGGGAAAATG+AGG - chr3.2:83528713-83528732 None:intergenic 45.0%
TGTAGCAATGTGACGTGTCT+AGG - chr3.2:83527449-83527468 None:intergenic 45.0%
TTCCATCCTTGGTAAGCCAA+GGG - chr3.2:83527693-83527712 None:intergenic 45.0%
TTTATTGCCCAGCTCATGAC+AGG + chr3.2:83531002-83531021 MS.gene013077:intron 45.0%
TTTCCATCCTTGGTAAGCCA+AGG - chr3.2:83527694-83527713 None:intergenic 45.0%
! CAGACCAAACATGGCACTTT+TGG + chr3.2:83531553-83531572 MS.gene013077:CDS 45.0%
! GAAGTTTTCTCACAGTCCCA+AGG + chr3.2:83529424-83529443 MS.gene013077:intron 45.0%
! GATTGCTTCTAGCTGCTTTG+GGG + chr3.2:83530939-83530958 MS.gene013077:CDS 45.0%
! GCCCATTCAGCTTGTGATTT+TGG + chr3.2:83530782-83530801 MS.gene013077:CDS 45.0%
! GGATTGCTTCTAGCTGCTTT+GGG + chr3.2:83530938-83530957 MS.gene013077:CDS 45.0%
! TGGATTGCTTCTAGCTGCTT+TGG + chr3.2:83530937-83530956 MS.gene013077:CDS 45.0%
! TTTTCTCACAGTCCCAAGGT+TGG + chr3.2:83529428-83529447 MS.gene013077:intron 45.0%
!! ACAAAAAGTGCCTGCCTACT+TGG - chr3.2:83529280-83529299 None:intergenic 45.0%
!! ACAAGAGAGTACTATGCCAC+AGG + chr3.2:83528566-83528585 MS.gene013077:CDS 45.0%
!! AGAGCATTGTGCATATTGCC+CGG - chr3.2:83531352-83531371 None:intergenic 45.0%
!! ATGTATTGCCGGTTCTTCAG+AGG + chr3.2:83528651-83528670 MS.gene013077:CDS 45.0%
!! TCAGCTTGTGATTTTGGTGG+GGG + chr3.2:83530788-83530807 MS.gene013077:CDS 45.0%
!! TCTAGTAGCTCTAATGCCTG+TGG - chr3.2:83528585-83528604 None:intergenic 45.0%
AACCAATCTGTGGTCTCCCT+TGG + chr3.2:83527674-83527693 MS.gene013077:CDS 50.0%
AGCTTCCTGGTGAGTACTCT+TGG + chr3.2:83528540-83528559 MS.gene013077:CDS 50.0%
AGCTTGGGAAACAGCAAAGC+GGG + chr3.2:83530058-83530077 MS.gene013077:CDS 50.0%
AGGGAACCTGGCAGAATTTG+AGG - chr3.2:83528693-83528712 None:intergenic 50.0%
CAATCTCTTCGGGAGTCAGT+GGG - chr3.2:83530919-83530938 None:intergenic 50.0%
CAATCTGCGGTAGCATGAAC+TGG - chr3.2:83528620-83528639 None:intergenic 50.0%
CAGAGGAAGCCGATAAGCTT+GGG + chr3.2:83530043-83530062 MS.gene013077:CDS 50.0%
CAGTTCATGCTACCGCAGAT+TGG + chr3.2:83528618-83528637 MS.gene013077:CDS 50.0%
CATATGGCCTCCTGATCACA+CGG + chr3.2:83529628-83529647 MS.gene013077:intron 50.0%
CGGTACAAGGTTTCCATCCT+TGG - chr3.2:83527704-83527723 None:intergenic 50.0%
CTACACATGCAATCAGGAGC+AGG - chr3.2:83531701-83531720 None:intergenic 50.0%
CTGGTCAGAATTTCAGCGTG+CGG + chr3.2:83531604-83531623 MS.gene013077:CDS 50.0%
GAGCTGGGCAATAAACCTTG+TGG - chr3.2:83530997-83531016 None:intergenic 50.0%
GGGCAATATGCACAATGCTC+TGG + chr3.2:83531351-83531370 MS.gene013077:CDS 50.0%
TACTTACCCCCATCTTCTGC+TGG - chr3.2:83527910-83527929 None:intergenic 50.0%
TGCTCTAGCTAAATACCGGC+AGG + chr3.2:83530826-83530845 MS.gene013077:CDS 50.0%
TGTAGCGAAGACGCTGAACA+AGG - chr3.2:83529984-83530003 None:intergenic 50.0%
TGTGATCAGGAGGCCATATG+TGG - chr3.2:83529628-83529647 None:intergenic 50.0%
TTTCAGCGTGCGGTTCTTGA+TGG + chr3.2:83531614-83531633 MS.gene013077:CDS 50.0%
! GAATTTGGAGGCACGGTACA+AGG - chr3.2:83527717-83527736 None:intergenic 50.0%
! GCTGGTTCAATCCTCCATCA+AGG - chr3.2:83527892-83527911 None:intergenic 50.0%
!! TGGCCCAAAAGTGCCATGTT+TGG - chr3.2:83531560-83531579 None:intergenic 50.0%
ACAGACTGACAGGTGGCAAG+TGG - chr3.2:83529196-83529215 None:intergenic 55.0%
AGCCAAGGGAGACCACAGAT+TGG - chr3.2:83527679-83527698 None:intergenic 55.0%
AGGGGGAAAATGAGGGAACC+TGG - chr3.2:83528705-83528724 None:intergenic 55.0%
CAACTCCATTCATCGCGCCA+AGG + chr3.2:83529654-83529673 MS.gene013077:intron 55.0%
CAGGTGGCAAGTGGCAACAA+AGG - chr3.2:83529187-83529206 None:intergenic 55.0%
CATCCAGCGTCTCCGTTGTA+AGG + chr3.2:83529906-83529925 MS.gene013077:CDS 55.0%
CCAATCTCTTCGGGAGTCAG+TGG - chr3.2:83530920-83530939 None:intergenic 55.0%
CCAGAGGAAGCCGATAAGCT+TGG + chr3.2:83530042-83530061 MS.gene013077:CDS 55.0%
CTCCCTTGGCTTACCAAGGA+TGG + chr3.2:83527688-83527707 MS.gene013077:CDS 55.0%
GCGATGAGAGAACGGTGCAA+TGG - chr3.2:83529860-83529879 None:intergenic 55.0%
GGAGTTGCTACCGTGTGATC+AGG - chr3.2:83529641-83529660 None:intergenic 55.0%
GTTGCTACCGTGTGATCAGG+AGG - chr3.2:83529638-83529657 None:intergenic 55.0%
TGACCTTACAACGGAGACGC+TGG - chr3.2:83529912-83529931 None:intergenic 55.0%
TGGTCTCCCTTGGCTTACCA+AGG + chr3.2:83527684-83527703 MS.gene013077:CDS 55.0%
TTCCCTGCCAAATCACCTGC+CGG - chr3.2:83530844-83530863 None:intergenic 55.0%
! ATACCGGCAGGTGATTTGGC+AGG + chr3.2:83530838-83530857 MS.gene013077:CDS 55.0%
! TACCGGCAGGTGATTTGGCA+GGG + chr3.2:83530839-83530858 MS.gene013077:CDS 55.0%
!! CCAAGCTTATCGGCTTCCTC+TGG - chr3.2:83530045-83530064 None:intergenic 55.0%
!! CCACTGACTCCCGAAGAGAT+TGG + chr3.2:83530917-83530936 MS.gene013077:CDS 55.0%
!! GTGCTCCAAGAGTACTCACC+AGG - chr3.2:83528548-83528567 None:intergenic 55.0%
AGCGCTGCCCGAAAAGTCTC+GGG + chr3.2:83527850-83527869 MS.gene013077:intron 60.0%
CAGCGCTGCCCGAAAAGTCT+CGG + chr3.2:83527849-83527868 MS.gene013077:intron 60.0%
CGGAGACGCTGGATGTCTGA+TGG - chr3.2:83529901-83529920 None:intergenic 60.0%
GTGAGCCTTGGCGCGATGAA+TGG - chr3.2:83529662-83529681 None:intergenic 60.0%
!! GACGTGACGGACAGACTGAC+AGG - chr3.2:83529206-83529225 None:intergenic 60.0%
!! GTGACGGACAGACTGACAGG+TGG - chr3.2:83529203-83529222 None:intergenic 60.0%
GCGCTGCCCGAAAAGTCTCG+GGG + chr3.2:83527851-83527870 MS.gene013077:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 83527428 83531727 83527428 ID=MS.gene013077
chr3.2 mRNA 83527428 83531727 83527428 ID=MS.gene013077.t1;Parent=MS.gene013077
chr3.2 exon 83527428 83527490 83527428 ID=MS.gene013077.t1.exon1;Parent=MS.gene013077.t1
chr3.2 CDS 83527428 83527490 83527428 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83527660 83527741 83527660 ID=MS.gene013077.t1.exon2;Parent=MS.gene013077.t1
chr3.2 CDS 83527660 83527741 83527660 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83527852 83527922 83527852 ID=MS.gene013077.t1.exon3;Parent=MS.gene013077.t1
chr3.2 CDS 83527852 83527922 83527852 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83528293 83528381 83528293 ID=MS.gene013077.t1.exon4;Parent=MS.gene013077.t1
chr3.2 CDS 83528293 83528381 83528293 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83528469 83528672 83528469 ID=MS.gene013077.t1.exon5;Parent=MS.gene013077.t1
chr3.2 CDS 83528469 83528672 83528469 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83529843 83530113 83529843 ID=MS.gene013077.t1.exon6;Parent=MS.gene013077.t1
chr3.2 CDS 83529843 83530113 83529843 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83530773 83531000 83530773 ID=MS.gene013077.t1.exon7;Parent=MS.gene013077.t1
chr3.2 CDS 83530773 83531000 83530773 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83531175 83531372 83531175 ID=MS.gene013077.t1.exon8;Parent=MS.gene013077.t1
chr3.2 CDS 83531175 83531372 83531175 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
chr3.2 exon 83531518 83531727 83531518 ID=MS.gene013077.t1.exon9;Parent=MS.gene013077.t1
chr3.2 CDS 83531518 83531727 83531518 ID=cds.MS.gene013077.t1;Parent=MS.gene013077.t1
Gene Sequence

>MS.gene013077

GAATGGATTGCTCCTAAACCTAGACACGTCACATTGCTACAGGGTGCTCTACAACGCCGAACTGTGAGTACATTACACTTTTTCTGTTCATTCTTGAGTGTAAATTGTTTTACACTGTCAACAAATCACTACCGATCGTATGTGTTATTTTAATGATCTAATGCTTCCAATACAATTGACGGTGTACAAGTTTTCTACACAATTTTGTTACTTTTTTTGTTCTTGTTTTCAGTCTGTTGAAGTACAAACCAATCTGTGGTCTCCCTTGGCTTACCAAGGATGGAAACCTTGTACCGTGCCTCCAAATTCACCTTGTGAGTGCAAATCTGCATAATTGGATTATTTATTTTTCTATTAAAATTCAGGACTGTTTTGTTTGTCATTGGTTTTTGAATTTTTGTTTATTCCCTTTTGATTATTGCAGCGCTGCCCGAAAAGTCTCGGGGTTATATTCAAGTTTTCCTTGATGGAGGATTGAACCAGCAGAAGATGGGGGTAAGTAAATGAGATTGTTTTGAAAGGGTATAATTTCATTGCAGAAATGAAGGGTAAAAAAAAAACTGCTATGCCCCGTCTCATATTAAGTGTCATGTTTGGAATTTTTACTTGTCTCATAATTTTAAATTACCAATGAAGTATTAATTACCTTTTTCCACTGATATATCCTTATACTCTATTTTATCTAAACACATTTAACTACTCTACTACGTACTAACTACTATATTAATAAAATTACTTTAGCAAATGAAAATCATTTTATCATAGAGATTAGTACACTTAATGATTTTCTTAAGTGTGCACAACCTTTAAAGACATATTCTAATCACTATTCTAATATCAGTTTCCCACATTTTCTATTTAAAAGATATGTGATGCTGTTGCTGTTGCTAAAATTTTGAATGTAACGTTGGTGATCCCGCATTTTGAAGTGAATCCTGTCTGGCAAGATTCAAGGTATATCTAGTGTGGGATATTTTTGCAACCTTTATGTCTTCAATTTTTTATACCAGCCATTTATACTGAGTTGTTATTTTTCTGCAGTTCATTTGCAGATATATTTGACGTTGATCACTTCATTGATGTTCTCCGTGACGAAGTATCTATAGTGAAAGAGCTTCCTGGTGAGTACTCTTGGAGCACAAGAGAGTACTATGCCACAGGCATTAGAGCTACTAGAATTAAAACAGCGCCAGTTCATGCTACCGCAGATTGGTATACAGAAAATGTATTGCCGGTTCTTCAGAGGTATGTGAATAACTTAACCTCAAATTCTGCCAGGTTCCCTCATTTTCCCCCTGAAATGCATTTAGGTTTTGCCATTATATAGAAAATGTGTTGACTTAGAAGCTTTTGCAACTAGCCCTTACAATGGATTTCCATGATATAATTTGTAGGTTTTGATGCTCTGTATGTATAAAATTCAATATTGAGCACAGACAATTAATCTCAATTTACCATCAATTATTGTCTCATAATCCATTGGAAAAAAATAAGGAGACAGTTTAAGAAAAAATTCTGGGTGGATTTATGAAATCTATTAAGACGATGCACTAGGCTTAATGAAGATTTCTTGTACCAATCAAGTCAGTGTTGTTTTTTGGGAAAAAAATTACAGTTTAAGGCTTCACTTACCTATAGAAAATAACTGAAAATATTTAATTAGTAGAATTAATAGACTAGAGACTTAATCTATTCAAAGTATAAACAATTTCCAAACAAGCTATATAAATAATACTATTTCCAGCACAGTATTATACCTTTGTTGCCACTTGCCACCTGTCAGTCTGTCCGTCACGTCACCCATCCATATTTTTCAATCTAACAACTACTCAGTGCTCTTAGTGAACTTCCAAGTAGGCAGGCACTTTTTGTTGTCAAATGCCTATTTTCTTTGTTTGTTATCACTTGCCATAGTTTATTGACTCAAATAGTTGTCAGGGGATATACCTAGGATCTAAGAAAGAAAAATTATTTGGTTCTTCCAAGGATTATGTGGGAAGTTTTCTCACAGTCCCAAGGTTGGAATTTACATAGTTTGAGTTATGTGCAATTTTTTGTTTTAGGAACTGCTTTCTTCCTAGTTCTAATGTAGTGCTGTAAAGTGCCTTCCATTGCAGTATTTAGGGAAGGTTGGACTCATCGTGAATCTATTATAATCATTCTTACCTCACATCTGCAAAAGACTGTTTTAATAACTCCACATATGGCCTCCTGATCACACGGTAGCAACTCCATTCATCGCGCCAAGGCTCACCTTCATTCTTATAAATATCACACTGTAATTTATTCTTTGATGTATATAAAATTCTAAATATGCTTACGGAGTGCCATAAGCCACTTAGTGTCTTCCTTTAGATATGCATTATTTACGTAAATACCTGTTTTCAAATGTTGTAGATTTTCTCGTTGATACAGTTATGGTGTTGCTGCCATTGCACCGTTCTCTCATCGCTTGACATTCAACGGCTTACCATCAGACATCCAGCGTCTCCGTTGTAAGGTCAACTTTGAAGCACTGAACTTTGTTCCACACGTTAAGGAATTAGGAGATATCCTTGTTCAGCGTCTTCGCTACAATTCTAGTATCAACCAAGCAGAATCAAATGACTATTTGCCAGAGGAAGCCGATAAGCTTGGGAAACAGCAAAGCGGGAAGTTTGTTGTGTTGCATCTGCGTTTTGATAAAGTATAGTCTTCATTTGCATTTTGCCAGGATTCAAAAAATTATGGGTCACTTGTCTTTCTAATTTTACTTGGAAAGTCTTATTATTGCACTGTGATTACAGTATTATAAGCGGAATATAGTTTGTTAGGCAACAACTTGCATGTTGGTAGACTGACTGCTTCATATGTTTTAAGTAGAGTAATCAGTTCAAATATATTTAGCACCAATAATTTTTCAATTTTTGTTTCTGTAATTGTGTTTGCATGCGTGCTTGAATGATATGTTGATGATTTATGCTTCTGTTGTGAAGCAGCTAGTTGCTACCACTGATGCTTCTACATAAAAGGCATCTTGAGTCTGTTTTAAATACCTTTTAGGTGTAACTACAGCTTGAAGGAACTACGTATTTGTATTGCCTGTGTGTGTGAATGTATTAGCATTCTTGCATGTGTTTAAAATTTGAACGAGGATTTATCCTCCTATTGTAGAGTTCTGGTTATACACGCTTCTGCAGAACAAAAAAACTGATTCAGTTGTGAAGAATTTTTCTATTAACTGCAGTTTAAGGAACTGCACATTTCATCTTGAATTCTCCTTGTGATCCAATTATATAAATGACAATTTATGTTTTTTTCAGAAAATTAAGGCTCCTGTTAATTAATGGTCACTGACATGTGCAGGATATGGCAGCCCATTCAGCTTGTGATTTTGGTGGGGGTAAAGCTGAGAAACTTGCTCTAGCTAAATACCGGCAGGTGATTTGGCAGGGAAGAGTATTGAATTCCCAATTCAATGATGAAGAGTTGAGAAATCAGGGGCGTTGCCCACTGACTCCCGAAGAGATTGGATTGCTTCTAGCTGCTTTGGGGTTCAACAACAGAACACGACTTTATCTTGCTTCCCACAAGGTTTATTGCCCAGCTCATGACAGGATATATTGTTATTATGTAACAACAAAGATTAATTGCAATATTCATTGCAATATTAATTGATAAATAATCTAGTACAGTTTTTACATCTTTGTGCATTGTCATTTTATAGTTTACTTTTGAACTTAGTCTGGATTGATTCTATGTTTTTAGGTTTATGGTGGAAAAGCTAGGTTGGAAACTTTAAGCACGTTATTTCCTTTTATGGAAGATAAGAAAAGTCTAGTCTCTGCAGAGACAATGGCCAAAGTTAATGGAAAGGCATCGCTATTAGCTGCTGTTGATTATTATGTGAGCATGCACAGCGACATCTTCATTTCGGCTTCTCCGGGCAATATGCACAATGCTCTGGTAAGAGTCGTTGTTAAATATGTTTGAAACTTAACAACTGTGAAGAGTTACATCGCATAACTACTTATATGTTATGTATTGCTGCAAGACATGTAGGAAATCCCCAAAATTTACCGTTTAAACCAAACATCTTTTGCATCTTCAGGTGGCACATCGTGCTTATAAGAATCTGAAGACTATCAGACCAAACATGGCACTTTTGGGCCAGCTATTTCAGAATAAGAGCATAGGCTGGTCAGAATTTCAGCGTGCGGTTCTTGATGGACATAAGAACAGACAGGGACAGATAAGATTAAGAAAGGAGAAGCAATCAATTTATACATACCCTGCTCCTGATTGCATGTGTAGAGCTTAG
Protein sequence

>MS.gene013077.t1

EWIAPKPRHVTLLQGALQRRTSVEVQTNLWSPLAYQGWKPCTVPPNSPSLPEKSRGYIQVFLDGGLNQQKMGICDAVAVAKILNVTLVIPHFEVNPVWQDSSSFADIFDVDHFIDVLRDEVSIVKELPGEYSWSTREYYATGIRATRIKTAPVHATADWYTENVLPVLQSYGVAAIAPFSHRLTFNGLPSDIQRLRCKVNFEALNFVPHVKELGDILVQRLRYNSSINQAESNDYLPEEADKLGKQQSGKFVVLHLRFDKDMAAHSACDFGGGKAEKLALAKYRQVIWQGRVLNSQFNDEELRNQGRCPLTPEEIGLLLAALGFNNRTRLYLASHKVYGGKARLETLSTLFPFMEDKKSLVSAETMAKVNGKASLLAAVDYYVSMHSDIFISASPGNMHNALVAHRAYKNLKTIRPNMALLGQLFQNKSIGWSEFQRAVLDGHKNRQGQIRLRKEKQSIYTYPAPDCMCRA