Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014045.t1 | XP_003625059.1 | 99 | 477 | 5 | 0 | 1 | 477 | 1 | 477 | 3.20E-279 | 970.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014045.t1 | O48917 | 77.8 | 481 | 99 | 5 | 1 | 477 | 1 | 477 | 1.4e-219 | 763.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014045.t1 | G7KRQ8 | 99.0 | 477 | 5 | 0 | 1 | 477 | 1 | 477 | 2.3e-279 | 970.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33101 | MS.gene014045 | PPI |
MS.gene014045 | MS.gene016107 | PPI |
MS.gene014045 | MS.gene051502 | PPI |
MS.gene058467 | MS.gene014045 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014045.t1 | MTR_7g090510 | 98.952 | 477 | 5 | 0 | 1 | 477 | 1 | 477 | 0.0 | 989 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene014045.t1 | AT4G33030 | 77.755 | 481 | 99 | 5 | 1 | 477 | 1 | 477 | 0.0 | 753 |
Find 124 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGACTATGATGCAATATT+TGG | 0.140392 | 7.2:-18191196 | MS.gene014045:CDS |
CTGATGCTGTTGTCCATTTC+GGG | 0.173565 | 7.2:-18191612 | MS.gene014045:CDS |
ATTACTCGCTTCGGTTTAAA+AGG | 0.187741 | 7.2:+18191892 | None:intergenic |
CCTTCCTCAATATCAATATT+TGG | 0.201469 | 7.2:+18191430 | None:intergenic |
CCTGATGCTGTTGTCCATTT+CGG | 0.263402 | 7.2:-18191613 | MS.gene014045:CDS |
CTGAATCAAGGAGTGGTATA+TGG | 0.263921 | 7.2:-18191265 | MS.gene014045:CDS |
CGCAAGAAAAGCCGTCTAAA+TGG | 0.294684 | 7.2:+18192006 | None:intergenic |
AGCTTTCACTTGCAAAGCTT+GGG | 0.304992 | 7.2:-18191305 | MS.gene014045:CDS |
TAGTTTGAACCGGGGCTTCC+TGG | 0.305214 | 7.2:+18191926 | None:intergenic |
AAATTATGCCTGGTGTTTCT+TGG | 0.333741 | 7.2:-18189326 | MS.gene014045:CDS |
TGCAAGTGAAAGCTATGTTA+TGG | 0.335168 | 7.2:+18191314 | None:intergenic |
GGTCATCCACTCACTGTATA+TGG | 0.336464 | 7.2:-18191136 | MS.gene014045:CDS |
GTGTTTCTTGGAGAAAGGTT+GGG | 0.344780 | 7.2:-18189314 | MS.gene014045:CDS |
AAGCCGTCTAAATGGAGTTT+TGG | 0.349474 | 7.2:+18192014 | None:intergenic |
TGCATGAAGAGTTGTGTAAC+AGG | 0.360759 | 7.2:-18191219 | MS.gene014045:CDS |
TGATTCACTGCTTAACTTTG+CGG | 0.361307 | 7.2:-18189379 | MS.gene014045:CDS |
GCCCCGGTTCAAACTAGTTC+TGG | 0.371819 | 7.2:-18191919 | MS.gene014045:CDS |
CTCATAGGACTTGAAGGTTT+CGG | 0.374096 | 7.2:+18191636 | None:intergenic |
CGATCCTGGATGGAGGAAAT+TGG | 0.387488 | 7.2:+18191736 | None:intergenic |
TAACCCTAGAGTGGAGTTAG+AGG | 0.392922 | 7.2:-18189478 | MS.gene014045:CDS |
GCAAGTGAAAGCTATGTTAT+GGG | 0.394552 | 7.2:+18191315 | None:intergenic |
TCTAGGGTTAGGCACTGATA+TGG | 0.398330 | 7.2:+18189491 | None:intergenic |
AACACTAAACTAGTTGATCT+TGG | 0.398824 | 7.2:-18189435 | MS.gene014045:CDS |
TAAAATGAGCTAGCTTGCTT+TGG | 0.399512 | 7.2:+18191361 | None:intergenic |
TCCAACACTGAATGCGATCC+TGG | 0.403609 | 7.2:+18191722 | None:intergenic |
TTGAAGACTCGGAACTCTCC+AGG | 0.404275 | 7.2:+18189597 | None:intergenic |
GGTGTTTCTTGGAGAAAGGT+TGG | 0.408948 | 7.2:-18189315 | MS.gene014045:CDS |
CGGATCGCTGTTCCCCGAAA+TGG | 0.410099 | 7.2:+18191599 | None:intergenic |
TAGCTTTCACTTGCAAAGCT+TGG | 0.414968 | 7.2:-18191306 | MS.gene014045:CDS |
ATTGAATCGGTTCTGTGTTC+AGG | 0.420146 | 7.2:-18191167 | MS.gene014045:CDS |
ACAGAAACCAAGGAAAAGTT+TGG | 0.427205 | 7.2:-18191980 | MS.gene014045:CDS |
CCGAAATGGACAACAGCATC+AGG | 0.432925 | 7.2:+18191613 | None:intergenic |
CGGAACTCTCCAGGGTTAGC+CGG | 0.438324 | 7.2:+18189606 | None:intergenic |
ATCAGGCTCATAGGACTTGA+AGG | 0.444397 | 7.2:+18191630 | None:intergenic |
TGAATCAAGGAGTGGTATAT+GGG | 0.446459 | 7.2:-18191264 | MS.gene014045:CDS |
CTAGTCAAGCTTGGGACAAT+GGG | 0.448728 | 7.2:-18191466 | MS.gene014045:CDS |
TTCTGTGTTCAGGCTGCTGT+TGG | 0.451203 | 7.2:-18191157 | MS.gene014045:CDS |
CCTCGTAACCTTTGTTAGAA+AGG | 0.451936 | 7.2:+18191824 | None:intergenic |
CCAATGACCATTACTCGCTT+CGG | 0.452722 | 7.2:+18191883 | None:intergenic |
GATGTTGAGCATTGGTGAAA+AGG | 0.453224 | 7.2:+18192066 | None:intergenic |
TGTTTCTTGGAGAAAGGTTG+GGG | 0.454574 | 7.2:-18189313 | MS.gene014045:CDS |
GCCTGGTGTTTCTTGGAGAA+AGG | 0.462195 | 7.2:-18189319 | MS.gene014045:CDS |
TCGCCAGAACTAGTTTGAAC+CGG | 0.465526 | 7.2:+18191916 | None:intergenic |
TTCTACAGTTTCAACTGGCC+AGG | 0.466150 | 7.2:-18191944 | MS.gene014045:CDS |
TACGAAAGCTGGTGAGAAGT+TGG | 0.467785 | 7.2:-18189529 | MS.gene014045:CDS |
CTTGGGACAATGGGTGAATA+CGG | 0.477903 | 7.2:-18191457 | MS.gene014045:CDS |
AATGCTTCTACAGTTTCAAC+TGG | 0.486284 | 7.2:-18191949 | MS.gene014045:CDS |
GCTGAGCTTGTTACGAAAGC+TGG | 0.488739 | 7.2:-18189540 | MS.gene014045:CDS |
ACGAAAGCTGGTGAGAAGTT+GGG | 0.489003 | 7.2:-18189528 | MS.gene014045:CDS |
CAGTGTTGGAAATCTCTCAC+TGG | 0.491751 | 7.2:-18191709 | MS.gene014045:CDS |
TATTTGGAACTGCATTGAAT+CGG | 0.493431 | 7.2:-18191180 | MS.gene014045:CDS |
GACAACAGCATCAGGCTCAT+AGG | 0.494062 | 7.2:+18191621 | None:intergenic |
CAGTAAATTGATTGAAGACT+CGG | 0.495401 | 7.2:+18189586 | None:intergenic |
CCGAAGCGAGTAATGGTCAT+TGG | 0.499010 | 7.2:-18191883 | MS.gene014045:CDS |
CACAGCAAAACAATGTTGTC+GGG | 0.499040 | 7.2:-18191537 | MS.gene014045:CDS |
CACACCAATTTCCTCCATCC+AGG | 0.500313 | 7.2:-18191740 | MS.gene014045:CDS |
CGCCAGAACTAGTTTGAACC+GGG | 0.501193 | 7.2:+18191917 | None:intergenic |
AACCTTTGTTAGAAAGGTGG+AGG | 0.503426 | 7.2:+18191830 | None:intergenic |
GAGCTAGCTTGCTTTGGATA+CGG | 0.506316 | 7.2:+18191367 | None:intergenic |
GGAACTCTCCAGGGTTAGCC+GGG | 0.506813 | 7.2:+18189607 | None:intergenic |
TTGCGGTTCAGTACAAAGAC+CGG | 0.508555 | 7.2:-18189362 | MS.gene014045:CDS |
ATTGTCATCTAGTCAAGCTT+GGG | 0.509144 | 7.2:-18191474 | MS.gene014045:CDS |
CCAAATATTGATATTGAGGA+AGG | 0.509151 | 7.2:-18191430 | MS.gene014045:CDS |
GACCGGTCTATCATAGAGTA+AGG | 0.509269 | 7.2:+18191574 | None:intergenic |
AACTCCAAATATTGATATTG+AGG | 0.510539 | 7.2:-18191434 | MS.gene014045:CDS |
GTAATGGTCATTGGTGGAGA+TGG | 0.511804 | 7.2:-18191874 | MS.gene014045:CDS |
TCTAGTCAAGCTTGGGACAA+TGG | 0.511865 | 7.2:-18191467 | MS.gene014045:CDS |
GATTGTCATCTAGTCAAGCT+TGG | 0.511909 | 7.2:-18191475 | MS.gene014045:CDS |
CCACTCACTGTATATGGTAA+AGG | 0.514565 | 7.2:-18191130 | MS.gene014045:CDS |
TGAGCTTGCCATTGCAAACC+CGG | 0.515121 | 7.2:-18189625 | MS.gene014045:CDS |
TTCAACTGGCCAGGAAGCCC+CGG | 0.518120 | 7.2:-18191935 | MS.gene014045:CDS |
TGCTCCTCTAACTCCACTCT+AGG | 0.523420 | 7.2:+18189474 | None:intergenic |
CTCCTTACTCTATGATAGAC+CGG | 0.525170 | 7.2:-18191576 | MS.gene014045:CDS |
TTACTCGCTTCGGTTTAAAA+GGG | 0.531134 | 7.2:+18191893 | None:intergenic |
ATTGCAAACCCGGCTAACCC+TGG | 0.532722 | 7.2:-18189615 | MS.gene014045:CDS |
GTGTATACACAGCTCTTGAC+CGG | 0.533184 | 7.2:+18191557 | None:intergenic |
ACACAGCAAAACAATGTTGT+CGG | 0.535211 | 7.2:-18191538 | MS.gene014045:CDS |
TGTATATGGTAAAGGAGGCC+AGG | 0.535491 | 7.2:-18191122 | MS.gene014045:intron |
CGGGCAACTGATCTGAATCA+AGG | 0.540528 | 7.2:-18191277 | MS.gene014045:CDS |
TGGAGATGGATACTGTGGTT+GGG | 0.542951 | 7.2:-18191860 | MS.gene014045:CDS |
GACACTAAGCAAATTATGCC+TGG | 0.547893 | 7.2:-18189336 | MS.gene014045:CDS |
TAAACAAGGTTTGTTTGAAG+CGG | 0.550343 | 7.2:+18192092 | None:intergenic |
GCTTTCACTTGCAAAGCTTG+GGG | 0.550528 | 7.2:-18191304 | MS.gene014045:CDS |
ACTCCAAAACTCCATTTAGA+CGG | 0.553484 | 7.2:-18192017 | MS.gene014045:CDS |
GTGGAGATGGATACTGTGGT+TGG | 0.563462 | 7.2:-18191861 | MS.gene014045:CDS |
ACACTGAATGCGATCCTGGA+TGG | 0.563966 | 7.2:+18191726 | None:intergenic |
GCTCCTCTAACTCCACTCTA+GGG | 0.565035 | 7.2:+18189475 | None:intergenic |
TCCAGGATCGCATTCAGTGT+TGG | 0.567073 | 7.2:-18191723 | MS.gene014045:CDS |
TGTCCTTCCGTTGTGAGTGA+TGG | 0.571830 | 7.2:+18191399 | None:intergenic |
AGGGTTAGCCGGGTTTGCAA+TGG | 0.573221 | 7.2:+18189617 | None:intergenic |
CGTAACCTTTGTTAGAAAGG+TGG | 0.578750 | 7.2:+18191827 | None:intergenic |
AAAAGTATTGAGCTATACAT+TGG | 0.580925 | 7.2:-18191685 | MS.gene014045:CDS |
TATAAAATGATGTTGAGCAT+TGG | 0.582743 | 7.2:+18192058 | None:intergenic |
AAGCGAGTAATGGTCATTGG+TGG | 0.585308 | 7.2:-18191880 | MS.gene014045:CDS |
TCTAACTCCACTCTAGGGTT+AGG | 0.586318 | 7.2:+18189480 | None:intergenic |
AGTGTTGGAAATCTCTCACT+GGG | 0.586597 | 7.2:-18191708 | MS.gene014045:CDS |
CCTTTCTAACAAAGGTTACG+AGG | 0.587127 | 7.2:-18191824 | MS.gene014045:CDS |
CCTTTACCATATACAGTGAG+TGG | 0.594076 | 7.2:+18191130 | None:intergenic |
TGAAGACTCGGAACTCTCCA+GGG | 0.596954 | 7.2:+18189598 | None:intergenic |
GTTTGAAGCGGAGAAAGTCA+AGG | 0.597796 | 7.2:+18192104 | None:intergenic |
CTTTCACTTGCAAAGCTTGG+GGG | 0.598323 | 7.2:-18191303 | MS.gene014045:CDS |
TGAGAGAATCTAGTCCAAGC+TGG | 0.600491 | 7.2:+18191761 | None:intergenic |
GCCCTCCACCTTTCTAACAA+AGG | 0.602875 | 7.2:-18191832 | MS.gene014045:CDS |
TGTATCTCTTATGTCAAGGA+AGG | 0.605182 | 7.2:+18189659 | None:intergenic |
GAACTGTATCTCTTATGTCA+AGG | 0.608223 | 7.2:+18189655 | None:intergenic |
CTCACTGTATATGGTAAAGG+AGG | 0.608718 | 7.2:-18191127 | MS.gene014045:CDS |
ATCAGTGCCTAACCCTAGAG+TGG | 0.611638 | 7.2:-18189487 | MS.gene014045:CDS |
ACCTTTGTTAGAAAGGTGGA+GGG | 0.612052 | 7.2:+18191831 | None:intergenic |
AGAGAATCTGAAAGAAAGTG+TGG | 0.612228 | 7.2:+18189405 | None:intergenic |
TCGAACAAGGTTGTCAACAA+TGG | 0.614328 | 7.2:+18191798 | None:intergenic |
TGATGCTGTTGTCCATTTCG+GGG | 0.617432 | 7.2:-18191611 | MS.gene014045:CDS |
TTACCATCACTCACAACGGA+AGG | 0.617927 | 7.2:-18191402 | MS.gene014045:CDS |
CTGAATGCGATCCTGGATGG+AGG | 0.618262 | 7.2:+18191729 | None:intergenic |
TGCGGTTCAGTACAAAGACC+GGG | 0.625601 | 7.2:-18189361 | MS.gene014045:CDS |
TCTTGCGAGAACAGAAACCA+AGG | 0.641034 | 7.2:-18191990 | MS.gene014045:CDS |
ACCTTTCTCCAAGAAACACC+AGG | 0.645278 | 7.2:+18189318 | None:intergenic |
TAATTTGCTTAGTGTCAACC+CGG | 0.652985 | 7.2:+18189343 | None:intergenic |
GTCTATCATAGAGTAAGGAG+CGG | 0.663083 | 7.2:+18191579 | None:intergenic |
GAATCAAGGAGTGGTATATG+GGG | 0.664294 | 7.2:-18191263 | MS.gene014045:CDS |
AACTGATCTGAATCAAGGAG+TGG | 0.668884 | 7.2:-18191272 | MS.gene014045:CDS |
ATTGGTGGAGATGGATACTG+TGG | 0.674313 | 7.2:-18191865 | MS.gene014045:CDS |
TATATTACCATCACTCACAA+CGG | 0.680492 | 7.2:-18191406 | MS.gene014045:CDS |
GCCAGAACTAGTTTGAACCG+GGG | 0.700751 | 7.2:+18191918 | None:intergenic |
TGCTATAAAAGAGTACAGAG+AGG | 0.711022 | 7.2:-18191497 | MS.gene014045:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAAATGTGTTATTAAT+AGG | - | chr7.2:18191379-18191398 | MS.gene014045:CDS | 10.0% |
!!! | TTAAAAAAATATTTTTTGTG+TGG | - | chr7.2:18191347-18191366 | MS.gene014045:CDS | 10.0% |
!!! | TTTTTTTAATCTTATTTTCT+AGG | + | chr7.2:18191336-18191355 | None:intergenic | 10.0% |
!! | TATCAATAAGAAATAAACAA+GGG | + | chr7.2:18190335-18190354 | None:intergenic | 15.0% |
!! | TATGCTTAATAAGTTAATAA+TGG | + | chr7.2:18190587-18190606 | None:intergenic | 15.0% |
!! | TTATCAATAAGAAATAAACA+AGG | + | chr7.2:18190336-18190355 | None:intergenic | 15.0% |
!! | TTATTGTTTAAATTACTTCT+TGG | - | chr7.2:18191522-18191541 | MS.gene014045:CDS | 15.0% |
!!! | CAGATATTTTTTTAGAAAAT+AGG | - | chr7.2:18190966-18190985 | MS.gene014045:intron | 15.0% |
!! | AATTGGTACAAATTATAGTT+AGG | - | chr7.2:18191259-18191278 | MS.gene014045:CDS | 20.0% |
!! | AATTGGTACAAATTATAGTT+AGG | + | chr7.2:18191278-18191259 | None:intergenic | 20.0% |
!! | ACATGCAAAAAATTAATTAG+TGG | + | chr7.2:18191708-18191727 | None:intergenic | 20.0% |
!! | ATAATTAAACCATATAACTG+CGG | - | chr7.2:18190761-18190780 | MS.gene014045:intron | 20.0% |
!! | ATTATAAAATGTATTCTACG+AGG | + | chr7.2:18190543-18190562 | None:intergenic | 20.0% |
!! | ATTGGTACAAATTATAGTTA+GGG | - | chr7.2:18191260-18191279 | MS.gene014045:CDS | 20.0% |
!! | ATTGGTACAAATTATAGTTA+GGG | + | chr7.2:18191279-18191260 | None:intergenic | 20.0% |
!! | CATATAGCAAAATAAATGTA+AGG | - | chr7.2:18191411-18191430 | MS.gene014045:CDS | 20.0% |
!!! | AACTATAATTTGTACCAATT+TGG | - | chr7.2:18191043-18191062 | MS.gene014045:intron | 20.0% |
!!! | AACTATAATTTGTACCAATT+TGG | + | chr7.2:18191062-18191043 | None:intergenic | 20.0% |
!!! | GAAAAATTTGTTAATGGAAA+TGG | - | chr7.2:18191640-18191659 | MS.gene014045:CDS | 20.0% |
! | AACTCCAAATATTGATATTG+AGG | - | chr7.2:18189985-18190004 | MS.gene014045:intron | 25.0% |
! | ATAAGAAATAAACAAGGGAT+TGG | + | chr7.2:18190330-18190349 | None:intergenic | 25.0% |
! | ATAGTCAGCATATTCAATAT+GGG | - | chr7.2:18191545-18191564 | MS.gene014045:CDS | 25.0% |
! | CTAAACCATATTGAATTTCA+CGG | + | chr7.2:18191580-18191599 | None:intergenic | 25.0% |
! | GAATCTATGCACATAAAAAA+AGG | + | chr7.2:18190818-18190837 | None:intergenic | 25.0% |
! | TATAAAATGATGTTGAGCAT+TGG | + | chr7.2:18189364-18189383 | None:intergenic | 25.0% |
! | TATTACCGTGAAATTCAATA+TGG | - | chr7.2:18191572-18191591 | MS.gene014045:CDS | 25.0% |
! | TTGGTACAAATTATAGTTAG+GGG | - | chr7.2:18191261-18191280 | MS.gene014045:CDS | 25.0% |
! | TTGGTACAAATTATAGTTAG+GGG | + | chr7.2:18191280-18191261 | None:intergenic | 25.0% |
! | TTTGACTATGATGCAATATT+TGG | - | chr7.2:18190223-18190242 | MS.gene014045:intron | 25.0% |
!! | AAAATCTATGATTTTGCCAT+TGG | + | chr7.2:18190384-18190403 | None:intergenic | 25.0% |
!! | CTCAACATCATTTTATAACA+CGG | - | chr7.2:18189367-18189386 | MS.gene014045:CDS | 25.0% |
!! | CTCATTTTATCATTTAAGCA+AGG | - | chr7.2:18190072-18190091 | MS.gene014045:intron | 25.0% |
!! | TTTTCTTTTCGACACAATTT+TGG | + | chr7.2:18190620-18190639 | None:intergenic | 25.0% |
!!! | AAAAGTATTGAGCTATACAT+TGG | - | chr7.2:18189734-18189753 | MS.gene014045:intron | 25.0% |
!!! | GATGCTGAAAAATTTGTTAA+TGG | - | chr7.2:18191634-18191653 | MS.gene014045:CDS | 25.0% |
AACACTAAACTAGTTGATCT+TGG | - | chr7.2:18191984-18192003 | MS.gene014045:CDS | 30.0% | |
ATGAGATTTACATACGAACA+TGG | - | chr7.2:18191609-18191628 | MS.gene014045:CDS | 30.0% | |
CAGTAAATTGATTGAAGACT+CGG | + | chr7.2:18191836-18191855 | None:intergenic | 30.0% | |
CCAAATATTGATATTGAGGA+AGG | - | chr7.2:18189989-18190008 | MS.gene014045:intron | 30.0% | |
CCTTCCTCAATATCAATATT+TGG | + | chr7.2:18189992-18190011 | None:intergenic | 30.0% | |
CGTTAACTTATGTACCAATT+TGG | - | chr7.2:18191126-18191145 | MS.gene014045:CDS | 30.0% | |
GAGACAATCAATGAAGTTAA+GGG | - | chr7.2:18191292-18191311 | MS.gene014045:CDS | 30.0% | |
GATAGTCAGCATATTCAATA+TGG | - | chr7.2:18191544-18191563 | MS.gene014045:CDS | 30.0% | |
TAGTAACGAAGCAAAACATA+GGG | + | chr7.2:18191071-18191090 | None:intergenic | 30.0% | |
TATAACTGCGGAAAATATGA+TGG | - | chr7.2:18190773-18190792 | MS.gene014045:intron | 30.0% | |
TATATTACCATCACTCACAA+CGG | - | chr7.2:18190013-18190032 | MS.gene014045:intron | 30.0% | |
TCAAAAAAACGTGAACAGAA+AGG | + | chr7.2:18191185-18191204 | None:intergenic | 30.0% | |
TGAGACAATCAATGAAGTTA+AGG | - | chr7.2:18191291-18191310 | MS.gene014045:CDS | 30.0% | |
! | CTTCATTGATTGTCTCAATT+TGG | + | chr7.2:18191288-18191307 | None:intergenic | 30.0% |
! | TAAACAAGGTTTGTTTGAAG+CGG | + | chr7.2:18189330-18189349 | None:intergenic | 30.0% |
! | TATTTGGAACTGCATTGAAT+CGG | - | chr7.2:18190239-18190258 | MS.gene014045:intron | 30.0% |
! | TCATATTTTCCGCAGTTATA+TGG | + | chr7.2:18190773-18190792 | None:intergenic | 30.0% |
!! | AGAATTAAAGAGTATTGGTG+AGG | - | chr7.2:18190456-18190475 | MS.gene014045:intron | 30.0% |
!! | TTTTTCGAACTTTTCGAACT+TGG | - | chr7.2:18190409-18190428 | MS.gene014045:intron | 30.0% |
!!! | TGGTGAAAAGGTTTTAAACA+AGG | + | chr7.2:18189344-18189363 | None:intergenic | 30.0% |
!!! | TTACTAGTTTTAGTCCTTTC+TGG | - | chr7.2:18191085-18191104 | MS.gene014045:intron | 30.0% |
AAATTATGCCTGGTGTTTCT+TGG | - | chr7.2:18192093-18192112 | MS.gene014045:CDS | 35.0% | |
AATAGGCTTATTCAATCACC+CGG | - | chr7.2:18190983-18191002 | MS.gene014045:intron | 35.0% | |
AATCAATGAAGTTAAGGGAC+CGG | - | chr7.2:18191297-18191316 | MS.gene014045:CDS | 35.0% | |
AATCAATGAAGTTAAGGGAC+CGG | + | chr7.2:18191316-18191297 | None:intergenic | 35.0% | |
AATGCTTCTACAGTTTCAAC+TGG | - | chr7.2:18189470-18189489 | MS.gene014045:CDS | 35.0% | |
ACACAGCAAAACAATGTTGT+CGG | - | chr7.2:18189881-18189900 | MS.gene014045:intron | 35.0% | |
ACAGAAACCAAGGAAAAGTT+TGG | - | chr7.2:18189439-18189458 | MS.gene014045:CDS | 35.0% | |
ACTCCAAAACTCCATTTAGA+CGG | - | chr7.2:18189402-18189421 | MS.gene014045:CDS | 35.0% | |
AGAGAATCTGAAAGAAAGTG+TGG | + | chr7.2:18192017-18192036 | None:intergenic | 35.0% | |
AGATTTACATACGAACATGG+TGG | - | chr7.2:18191612-18191631 | MS.gene014045:CDS | 35.0% | |
AGGCTTGATCTTCAATGAAT+AGG | - | chr7.2:18191431-18191450 | MS.gene014045:CDS | 35.0% | |
AGTAACAGAGCAAAACATAG+AGG | - | chr7.2:18191232-18191251 | MS.gene014045:CDS | 35.0% | |
AGTAACGAAGCAAAACATAG+GGG | + | chr7.2:18191070-18191089 | None:intergenic | 35.0% | |
ATTACTCGCTTCGGTTTAAA+AGG | + | chr7.2:18189530-18189549 | None:intergenic | 35.0% | |
ATTGTCATCTAGTCAAGCTT+GGG | - | chr7.2:18189945-18189964 | MS.gene014045:intron | 35.0% | |
CAAAACATAGAGGACCAAAT+TGG | - | chr7.2:18191242-18191261 | MS.gene014045:CDS | 35.0% | |
CAATAGAGTAGTACCTCAAA+TGG | - | chr7.2:18190868-18190887 | MS.gene014045:intron | 35.0% | |
CTAGTAACGAAGCAAAACAT+AGG | + | chr7.2:18191072-18191091 | None:intergenic | 35.0% | |
GAAAGGACTAAAACTAGGAA+CGG | + | chr7.2:18191168-18191187 | None:intergenic | 35.0% | |
GAACAGAAAGGACTAAAACT+AGG | + | chr7.2:18191173-18191192 | None:intergenic | 35.0% | |
GAACTGTATCTCTTATGTCA+AGG | + | chr7.2:18191767-18191786 | None:intergenic | 35.0% | |
GAGACAAAAAACTCCATTTG+AGG | + | chr7.2:18190884-18190903 | None:intergenic | 35.0% | |
GATTCACATGTTTCAGACTA+GGG | - | chr7.2:18191737-18191756 | MS.gene014045:CDS | 35.0% | |
GCAAGTGAAAGCTATGTTAT+GGG | + | chr7.2:18190107-18190126 | None:intergenic | 35.0% | |
GCGACAATCAATGAAGTTAA+GGG | + | chr7.2:18191010-18191029 | None:intergenic | 35.0% | |
GGATGTGTTTATGTCATTAC+TGG | - | chr7.2:18190430-18190449 | MS.gene014045:intron | 35.0% | |
GTCGAAAAGAAAAACTGCTA+AGG | - | chr7.2:18190627-18190646 | MS.gene014045:intron | 35.0% | |
TGAATCAAGGAGTGGTATAT+GGG | - | chr7.2:18190155-18190174 | MS.gene014045:intron | 35.0% | |
TGATTCACATGTTTCAGACT+AGG | - | chr7.2:18191736-18191755 | MS.gene014045:CDS | 35.0% | |
TGATTCACTGCTTAACTTTG+CGG | - | chr7.2:18192040-18192059 | MS.gene014045:CDS | 35.0% | |
TGCAAGTGAAAGCTATGTTA+TGG | + | chr7.2:18190108-18190127 | None:intergenic | 35.0% | |
TGCGACAATCAATGAAGTTA+AGG | + | chr7.2:18191011-18191030 | None:intergenic | 35.0% | |
TGTATCTCTTATGTCAAGGA+AGG | + | chr7.2:18191763-18191782 | None:intergenic | 35.0% | |
TTACTCGCTTCGGTTTAAAA+GGG | + | chr7.2:18189529-18189548 | None:intergenic | 35.0% | |
TTTGAGAGAAACCAACAGAA+AGG | - | chr7.2:18191200-18191219 | MS.gene014045:CDS | 35.0% | |
TTTGAGAGAAACTACCAGAA+AGG | + | chr7.2:18191102-18191121 | None:intergenic | 35.0% | |
! | CTGATATGGTTTTCACATCA+AGG | + | chr7.2:18191917-18191936 | None:intergenic | 35.0% |
! | CTTCATTGATTGTCGCAATT+TGG | - | chr7.2:18191014-18191033 | MS.gene014045:intron | 35.0% |
! | GGTGCAGAATTAAAGAGTAT+TGG | - | chr7.2:18190451-18190470 | MS.gene014045:intron | 35.0% |
! | TGCTATAAAAGAGTACAGAG+AGG | - | chr7.2:18189922-18189941 | MS.gene014045:intron | 35.0% |
! | TTTCGACACAATTTTGGATC+AGG | + | chr7.2:18190614-18190633 | None:intergenic | 35.0% |
! | TTTTAAACCGAAGCGAGTAA+TGG | - | chr7.2:18189529-18189548 | MS.gene014045:CDS | 35.0% |
!! | ATCTTCGCCTAAAGTTTTGA+AGG | + | chr7.2:18191467-18191486 | None:intergenic | 35.0% |
!! | TAAAATGAGCTAGCTTGCTT+TGG | + | chr7.2:18190061-18190080 | None:intergenic | 35.0% |
!! | TAATTTGCTTAGTGTCAACC+CGG | + | chr7.2:18192079-18192098 | None:intergenic | 35.0% |
!!! | CTAGTTTTAGTCCTTTCTGT+TGG | + | chr7.2:18191190-18191171 | None:intergenic | 35.0% |
!!! | TCTTCGCCTAAAGTTTTGAA+GGG | + | chr7.2:18191466-18191485 | None:intergenic | 35.0% |
AACCTTTGTTAGAAAGGTGG+AGG | + | chr7.2:18189592-18189611 | None:intergenic | 40.0% | |
AACTGATCTGAATCAAGGAG+TGG | - | chr7.2:18190147-18190166 | MS.gene014045:intron | 40.0% | |
ACCTTTGTTAGAAAGGTGGA+GGG | + | chr7.2:18189591-18189610 | None:intergenic | 40.0% | |
AGAACAGTGACTGTTTCCAA+TGG | - | chr7.2:18190365-18190384 | MS.gene014045:intron | 40.0% | |
AGCTTTCACTTGCAAAGCTT+GGG | - | chr7.2:18190114-18190133 | MS.gene014045:intron | 40.0% | |
ATCAATGAAGTTAAGGGACC+GGG | - | chr7.2:18191298-18191317 | MS.gene014045:CDS | 40.0% | |
ATCAATGAAGTTAAGGGACC+GGG | + | chr7.2:18191317-18191298 | None:intergenic | 40.0% | |
ATGGAAGTAAATGTCAACGC+AGG | + | chr7.2:18190568-18190587 | None:intergenic | 40.0% | |
CAAAACATAGGGGACCAAAT+TGG | + | chr7.2:18191060-18191079 | None:intergenic | 40.0% | |
CACAGCAAAACAATGTTGTC+GGG | - | chr7.2:18189882-18189901 | MS.gene014045:intron | 40.0% | |
CCACTCACTGTATATGGTAA+AGG | - | chr7.2:18190289-18190308 | MS.gene014045:intron | 40.0% | |
CCTCGTAACCTTTGTTAGAA+AGG | + | chr7.2:18189598-18189617 | None:intergenic | 40.0% | |
CCTTTACCATATACAGTGAG+TGG | + | chr7.2:18190292-18190311 | None:intergenic | 40.0% | |
CCTTTCTAACAAAGGTTACG+AGG | - | chr7.2:18189595-18189614 | MS.gene014045:CDS | 40.0% | |
CGTAACCTTTGTTAGAAAGG+TGG | + | chr7.2:18189595-18189614 | None:intergenic | 40.0% | |
CTCACTGTATATGGTAAAGG+AGG | - | chr7.2:18190292-18190311 | MS.gene014045:intron | 40.0% | |
CTCATAGGACTTGAAGGTTT+CGG | + | chr7.2:18189786-18189805 | None:intergenic | 40.0% | |
CTCCTTACTCTATGATAGAC+CGG | - | chr7.2:18189843-18189862 | MS.gene014045:intron | 40.0% | |
CTGAATCAAGGAGTGGTATA+TGG | - | chr7.2:18190154-18190173 | MS.gene014045:intron | 40.0% | |
GAATCAAGGAGTGGTATATG+GGG | - | chr7.2:18190156-18190175 | MS.gene014045:intron | 40.0% | |
GACACTAAGCAAATTATGCC+TGG | - | chr7.2:18192083-18192102 | MS.gene014045:CDS | 40.0% | |
GATCAAAAAGACGTCGAACA+AGG | + | chr7.2:18189637-18189656 | None:intergenic | 40.0% | |
GATTGTCATCTAGTCAAGCT+TGG | - | chr7.2:18189944-18189963 | MS.gene014045:intron | 40.0% | |
GGCTACTACTAGTGTATAGA+TGG | - | chr7.2:18191661-18191680 | MS.gene014045:CDS | 40.0% | |
GTCTATCATAGAGTAAGGAG+CGG | + | chr7.2:18189843-18189862 | None:intergenic | 40.0% | |
GTGTTTCTTGGAGAAAGGTT+GGG | - | chr7.2:18192105-18192124 | MS.gene014045:CDS | 40.0% | |
TAGCTTTCACTTGCAAAGCT+TGG | - | chr7.2:18190113-18190132 | MS.gene014045:intron | 40.0% | |
TAGGAACGGAGCAAAACATA+GGG | + | chr7.2:18191154-18191173 | None:intergenic | 40.0% | |
TCGAACAAGGTTGTCAACAA+TGG | + | chr7.2:18189624-18189643 | None:intergenic | 40.0% | |
TCTAGGCTTATTCAATCACC+CGG | + | chr7.2:18191319-18191338 | None:intergenic | 40.0% | |
TGCATGAAGAGTTGTGTAAC+AGG | - | chr7.2:18190200-18190219 | MS.gene014045:intron | 40.0% | |
TGTTTCTTGGAGAAAGGTTG+GGG | - | chr7.2:18192106-18192125 | MS.gene014045:CDS | 40.0% | |
! | AAGCCGTCTAAATGGAGTTT+TGG | + | chr7.2:18189408-18189427 | None:intergenic | 40.0% |
! | ACAACTGCCAAACTTTTCCT+TGG | + | chr7.2:18189449-18189468 | None:intergenic | 40.0% |
! | AGTGTTGGAAATCTCTCACT+GGG | - | chr7.2:18189711-18189730 | MS.gene014045:intron | 40.0% |
! | ATTGAATCGGTTCTGTGTTC+AGG | - | chr7.2:18190252-18190271 | MS.gene014045:intron | 40.0% |
!! | GATGTTGAGCATTGGTGAAA+AGG | + | chr7.2:18189356-18189375 | None:intergenic | 40.0% |
AAGCGAGTAATGGTCATTGG+TGG | - | chr7.2:18189539-18189558 | MS.gene014045:CDS | 45.0% | |
ACCTTTCTCCAAGAAACACC+AGG | + | chr7.2:18192104-18192123 | None:intergenic | 45.0% | |
ACGAAAGCTGGTGAGAAGTT+GGG | - | chr7.2:18191891-18191910 | MS.gene014045:CDS | 45.0% | |
AGGAACGGAGCAAAACATAG+GGG | + | chr7.2:18191153-18191172 | None:intergenic | 45.0% | |
ATCAGGCTCATAGGACTTGA+AGG | + | chr7.2:18189792-18189811 | None:intergenic | 45.0% | |
ATTGGTGGAGATGGATACTG+TGG | - | chr7.2:18189554-18189573 | MS.gene014045:CDS | 45.0% | |
CCAATGACCATTACTCGCTT+CGG | + | chr7.2:18189539-18189558 | None:intergenic | 45.0% | |
CCTGATGCTGTTGTCCATTT+CGG | - | chr7.2:18189806-18189825 | MS.gene014045:intron | 45.0% | |
CGCAAGAAAAGCCGTCTAAA+TGG | + | chr7.2:18189416-18189435 | None:intergenic | 45.0% | |
CGCGTACCCTTCAAAACTTT+AGG | - | chr7.2:18191457-18191476 | MS.gene014045:CDS | 45.0% | |
CTAGGAACGGAGCAAAACAT+AGG | + | chr7.2:18191155-18191174 | None:intergenic | 45.0% | |
CTAGTCAAGCTTGGGACAAT+GGG | - | chr7.2:18189953-18189972 | MS.gene014045:intron | 45.0% | |
CTGATGCTGTTGTCCATTTC+GGG | - | chr7.2:18189807-18189826 | MS.gene014045:intron | 45.0% | |
CTTGGGACAATGGGTGAATA+CGG | - | chr7.2:18189962-18189981 | MS.gene014045:intron | 45.0% | |
CTTTCACTTGCAAAGCTTGG+GGG | - | chr7.2:18190116-18190135 | MS.gene014045:intron | 45.0% | |
GACCGGTCTATCATAGAGTA+AGG | + | chr7.2:18189848-18189867 | None:intergenic | 45.0% | |
GCTTTCACTTGCAAAGCTTG+GGG | - | chr7.2:18190115-18190134 | MS.gene014045:intron | 45.0% | |
GGTCATCCACTCACTGTATA+TGG | - | chr7.2:18190283-18190302 | MS.gene014045:intron | 45.0% | |
GGTGTTTCTTGGAGAAAGGT+TGG | - | chr7.2:18192104-18192123 | MS.gene014045:CDS | 45.0% | |
GTAATGGTCATTGGTGGAGA+TGG | - | chr7.2:18189545-18189564 | MS.gene014045:CDS | 45.0% | |
GTGTATACACAGCTCTTGAC+CGG | + | chr7.2:18189865-18189884 | None:intergenic | 45.0% | |
TAACCCTAGAGTGGAGTTAG+AGG | - | chr7.2:18191941-18191960 | MS.gene014045:CDS | 45.0% | |
TACGAAAGCTGGTGAGAAGT+TGG | - | chr7.2:18191890-18191909 | MS.gene014045:CDS | 45.0% | |
TCTAGTCAAGCTTGGGACAA+TGG | - | chr7.2:18189952-18189971 | MS.gene014045:intron | 45.0% | |
TCTTGCGAGAACAGAAACCA+AGG | - | chr7.2:18189429-18189448 | MS.gene014045:CDS | 45.0% | |
TGAGAGAATCTAGTCCAAGC+TGG | + | chr7.2:18189661-18189680 | None:intergenic | 45.0% | |
TGATGCTGTTGTCCATTTCG+GGG | - | chr7.2:18189808-18189827 | MS.gene014045:intron | 45.0% | |
TGGAGATGGATACTGTGGTT+GGG | - | chr7.2:18189559-18189578 | MS.gene014045:CDS | 45.0% | |
TGTATATGGTAAAGGAGGCC+AGG | - | chr7.2:18190297-18190316 | MS.gene014045:intron | 45.0% | |
TTACCATCACTCACAACGGA+AGG | - | chr7.2:18190017-18190036 | MS.gene014045:intron | 45.0% | |
TTCTACAGTTTCAACTGGCC+AGG | - | chr7.2:18189475-18189494 | MS.gene014045:CDS | 45.0% | |
TTGCGGTTCAGTACAAAGAC+CGG | - | chr7.2:18192057-18192076 | MS.gene014045:CDS | 45.0% | |
! | CAAGGGATTGGTATGTTACC+TGG | + | chr7.2:18190318-18190337 | None:intergenic | 45.0% |
! | CAGTGTTGGAAATCTCTCAC+TGG | - | chr7.2:18189710-18189729 | MS.gene014045:intron | 45.0% |
! | CGTCTTTTTGATCACCAGCT+TGG | - | chr7.2:18189644-18189663 | MS.gene014045:CDS | 45.0% |
! | GTATTGGTGAGGCTTCTTAG+TGG | - | chr7.2:18190467-18190486 | MS.gene014045:intron | 45.0% |
! | GTTTGAAGCGGAGAAAGTCA+AGG | + | chr7.2:18189318-18189337 | None:intergenic | 45.0% |
! | TCGCCAGAACTAGTTTGAAC+CGG | + | chr7.2:18189506-18189525 | None:intergenic | 45.0% |
!! | GAGCTAGCTTGCTTTGGATA+CGG | + | chr7.2:18190055-18190074 | None:intergenic | 45.0% |
!! | TCTAACTCCACTCTAGGGTT+AGG | + | chr7.2:18191942-18191961 | None:intergenic | 45.0% |
!! | TCTAGGGTTAGGCACTGATA+TGG | + | chr7.2:18191931-18191950 | None:intergenic | 45.0% |
ACACTGAATGCGATCCTGGA+TGG | + | chr7.2:18189696-18189715 | None:intergenic | 50.0% | |
ATCAGTGCCTAACCCTAGAG+TGG | - | chr7.2:18191932-18191951 | MS.gene014045:CDS | 50.0% | |
CACACCAATTTCCTCCATCC+AGG | - | chr7.2:18189679-18189698 | MS.gene014045:intron | 50.0% | |
CCGAAATGGACAACAGCATC+AGG | + | chr7.2:18189809-18189828 | None:intergenic | 50.0% | |
CCGAAGCGAGTAATGGTCAT+TGG | - | chr7.2:18189536-18189555 | MS.gene014045:CDS | 50.0% | |
CGATCCTGGATGGAGGAAAT+TGG | + | chr7.2:18189686-18189705 | None:intergenic | 50.0% | |
CGGGCAACTGATCTGAATCA+AGG | - | chr7.2:18190142-18190161 | MS.gene014045:intron | 50.0% | |
CTTGCAAAGCTTGGGGGATT+CGG | - | chr7.2:18190122-18190141 | MS.gene014045:intron | 50.0% | |
GACAACAGCATCAGGCTCAT+AGG | + | chr7.2:18189801-18189820 | None:intergenic | 50.0% | |
GCCCTCCACCTTTCTAACAA+AGG | - | chr7.2:18189587-18189606 | MS.gene014045:CDS | 50.0% | |
GCCTGGTGTTTCTTGGAGAA+AGG | - | chr7.2:18192100-18192119 | MS.gene014045:CDS | 50.0% | |
GCTCCTCTAACTCCACTCTA+GGG | + | chr7.2:18191947-18191966 | None:intergenic | 50.0% | |
GTGGAGATGGATACTGTGGT+TGG | - | chr7.2:18189558-18189577 | MS.gene014045:CDS | 50.0% | |
TCCAACACTGAATGCGATCC+TGG | + | chr7.2:18189700-18189719 | None:intergenic | 50.0% | |
TCCAGGATCGCATTCAGTGT+TGG | - | chr7.2:18189696-18189715 | MS.gene014045:intron | 50.0% | |
TGAAGACTCGGAACTCTCCA+GGG | + | chr7.2:18191824-18191843 | None:intergenic | 50.0% | |
TGAGCTTGCCATTGCAAACC+CGG | - | chr7.2:18191794-18191813 | MS.gene014045:CDS | 50.0% | |
TGCGGTTCAGTACAAAGACC+GGG | - | chr7.2:18192058-18192077 | MS.gene014045:CDS | 50.0% | |
TGCTCCTCTAACTCCACTCT+AGG | + | chr7.2:18191948-18191967 | None:intergenic | 50.0% | |
TGTCCTTCCGTTGTGAGTGA+TGG | + | chr7.2:18190023-18190042 | None:intergenic | 50.0% | |
TTCTGTGTTCAGGCTGCTGT+TGG | - | chr7.2:18190262-18190281 | MS.gene014045:intron | 50.0% | |
TTGAAGACTCGGAACTCTCC+AGG | + | chr7.2:18191825-18191844 | None:intergenic | 50.0% | |
TTGCAAAGCTTGGGGGATTC+GGG | - | chr7.2:18190123-18190142 | MS.gene014045:intron | 50.0% | |
! | CGCCAGAACTAGTTTGAACC+GGG | + | chr7.2:18189505-18189524 | None:intergenic | 50.0% |
! | GCCAGAACTAGTTTGAACCG+GGG | + | chr7.2:18189504-18189523 | None:intergenic | 50.0% |
!! | GCTGAGCTTGTTACGAAAGC+TGG | - | chr7.2:18191879-18191898 | MS.gene014045:CDS | 50.0% |
ATTGCAAACCCGGCTAACCC+TGG | - | chr7.2:18191804-18191823 | MS.gene014045:CDS | 55.0% | |
CTGAATGCGATCCTGGATGG+AGG | + | chr7.2:18189693-18189712 | None:intergenic | 55.0% | |
GCCCCGGTTCAAACTAGTTC+TGG | - | chr7.2:18189500-18189519 | MS.gene014045:CDS | 55.0% | |
TAGTTTGAACCGGGGCTTCC+TGG | + | chr7.2:18189496-18189515 | None:intergenic | 55.0% | |
!! | AGGGTTAGCCGGGTTTGCAA+TGG | + | chr7.2:18191805-18191824 | None:intergenic | 55.0% |
CGGATCGCTGTTCCCCGAAA+TGG | + | chr7.2:18189823-18189842 | None:intergenic | 60.0% | |
TTCAACTGGCCAGGAAGCCC+CGG | - | chr7.2:18189484-18189503 | MS.gene014045:CDS | 60.0% | |
! | CGGAACTCTCCAGGGTTAGC+CGG | + | chr7.2:18191816-18191835 | None:intergenic | 60.0% |
!! | GGAACTCTCCAGGGTTAGCC+GGG | + | chr7.2:18191815-18191834 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.2 | gene | 18189287 | 18192154 | 18189287 | ID=MS.gene014045 |
chr7.2 | mRNA | 18189287 | 18192154 | 18189287 | ID=MS.gene014045.t1;Parent=MS.gene014045 |
chr7.2 | exon | 18191123 | 18192154 | 18191123 | ID=MS.gene014045.t1.exon1;Parent=MS.gene014045.t1 |
chr7.2 | CDS | 18191123 | 18192154 | 18191123 | ID=cds.MS.gene014045.t1;Parent=MS.gene014045.t1 |
chr7.2 | exon | 18189287 | 18189688 | 18189287 | ID=MS.gene014045.t1.exon2;Parent=MS.gene014045.t1 |
chr7.2 | CDS | 18189287 | 18189688 | 18189287 | ID=cds.MS.gene014045.t1;Parent=MS.gene014045.t1 |
Gene Sequence |
Protein sequence |