Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051502.t1 | RHN39729.1 | 98.2 | 383 | 7 | 0 | 2 | 384 | 156 | 538 | 3.60E-220 | 773.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051502.t1 | Q9FZL4 | 88.6 | 386 | 42 | 1 | 1 | 384 | 145 | 530 | 8.7e-207 | 720.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051502.t1 | A0A396GED1 | 98.2 | 383 | 7 | 0 | 2 | 384 | 156 | 538 | 2.6e-220 | 773.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051502 | MS.gene058467 | 0.983465 | 8.13E-158 | -1.69E-46 |
| MS.gene051502 | MS.gene33101 | 0.982514 | 2.74E-155 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene051502 | MS.gene39116 | PPI |
| MS.gene051502 | MS.gene017798 | PPI |
| MS.gene014045 | MS.gene051502 | PPI |
| MS.gene017800 | MS.gene051502 | PPI |
| MS.gene051502 | MS.gene38814 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051502.t1 | MTR_8g027715 | 97.710 | 262 | 6 | 0 | 1 | 262 | 155 | 416 | 0.0 | 539 |
| MS.gene051502.t1 | MTR_4g115920 | 62.234 | 376 | 140 | 1 | 1 | 374 | 75 | 450 | 8.34e-169 | 480 |
| MS.gene051502.t1 | MTR_4g115920 | 60.969 | 351 | 135 | 1 | 27 | 375 | 6 | 356 | 7.07e-153 | 436 |
| MS.gene051502.t1 | MTR_1g013650 | 89.815 | 216 | 10 | 2 | 1 | 216 | 157 | 360 | 1.88e-137 | 397 |
| MS.gene051502.t1 | MTR_8g027905 | 92.593 | 108 | 8 | 0 | 277 | 384 | 132 | 239 | 5.72e-67 | 212 |
| MS.gene051502.t1 | MTR_8g027900 | 100.000 | 71 | 0 | 0 | 1 | 71 | 85 | 155 | 2.15e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051502.t1 | AT4G31780 | 82.383 | 386 | 66 | 1 | 1 | 384 | 148 | 533 | 0.0 | 668 |
| MS.gene051502.t1 | AT4G31780 | 77.184 | 412 | 66 | 2 | 1 | 384 | 148 | 559 | 0.0 | 654 |
| MS.gene051502.t1 | AT4G31780 | 82.173 | 359 | 62 | 1 | 28 | 384 | 8 | 366 | 0.0 | 615 |
| MS.gene051502.t1 | AT2G11810 | 60.622 | 386 | 147 | 2 | 1 | 381 | 79 | 464 | 1.01e-169 | 482 |
| MS.gene051502.t1 | AT5G20410 | 60.313 | 383 | 150 | 1 | 1 | 381 | 75 | 457 | 2.67e-165 | 471 |
| MS.gene051502.t1 | AT2G11810 | 60.177 | 339 | 130 | 2 | 48 | 381 | 3 | 341 | 4.72e-144 | 412 |
| MS.gene051502.t1 | AT2G11810 | 59.364 | 283 | 113 | 1 | 1 | 281 | 79 | 361 | 5.87e-119 | 349 |
| MS.gene051502.t1 | AT2G11810 | 58.947 | 285 | 115 | 1 | 1 | 283 | 79 | 363 | 6.43e-119 | 350 |
Find 88 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCCATGCATTCTTCAATTT+TGG | 0.143640 | 1.3:-7822061 | None:intergenic |
| GTAGGCCATAAATCTTTATT+TGG | 0.144917 | 1.3:-7820302 | None:intergenic |
| GATGAACTAAGGAGAGATTT+AGG | 0.146974 | 1.3:+7821247 | MS.gene051502:CDS |
| TCCAGCCTTCATTGCCCTTT+TGG | 0.207960 | 1.3:-7820268 | None:intergenic |
| AGGTGTTTATTACCGATTTA+TGG | 0.217636 | 1.3:+7818775 | MS.gene051502:intron |
| GTTCCCTATGTTGTTGAAAA+TGG | 0.232287 | 1.3:+7822717 | MS.gene051502:CDS |
| CAAACCCAAATAAAGATTTA+TGG | 0.240574 | 1.3:+7820297 | MS.gene051502:CDS |
| AGAATATGGCGATGATTATC+AGG | 0.317694 | 1.3:+7818034 | MS.gene051502:CDS |
| ATGAACTAAGGAGAGATTTA+GGG | 0.343617 | 1.3:+7821248 | MS.gene051502:CDS |
| ATGTAATCATTTAAAATAAT+AGG | 0.345699 | 1.3:-7822231 | None:intergenic |
| ACAAACTCAGTTCTATTGAT+TGG | 0.345962 | 1.3:+7821428 | MS.gene051502:CDS |
| ATGGCCTCTGCAATTGTCCC+TGG | 0.362907 | 1.3:-7822195 | None:intergenic |
| AAAATTGTTGCGGACTGGTT+TGG | 0.366157 | 1.3:+7822777 | MS.gene051502:CDS |
| TGCACACTGATTATTATATC+AGG | 0.373255 | 1.3:-7820002 | None:intergenic |
| TAGGCCATAAATCTTTATTT+GGG | 0.377476 | 1.3:-7820301 | None:intergenic |
| TCTTCCTGCTGTATTATTGA+TGG | 0.378039 | 1.3:+7821282 | MS.gene051502:CDS |
| TGGCATACCTTTGGCCGAAC+AGG | 0.379500 | 1.3:-7820348 | None:intergenic |
| TTTATAAAGGAAGGTCTAAC+AGG | 0.381701 | 1.3:-7820324 | None:intergenic |
| CTTCCTGCTGTATTATTGAT+GGG | 0.393576 | 1.3:+7821283 | MS.gene051502:CDS |
| TGGCCGAACAGGCTTTATAA+AGG | 0.422561 | 1.3:-7820337 | None:intergenic |
| TTGTGGAGGATGACCTACTA+TGG | 0.432904 | 1.3:+7818867 | MS.gene051502:CDS |
| CTTCCTTTATAAAGCCTGTT+CGG | 0.450461 | 1.3:+7820334 | MS.gene051502:CDS |
| AAATGATTACATTGCCGGGC+AGG | 0.456227 | 1.3:+7822242 | MS.gene051502:CDS |
| TGCATTAAAACTAGCAAGGC+CGG | 0.462786 | 1.3:+7822836 | MS.gene051502:CDS |
| GCCAAAAGGGCAATGAAGGC+TGG | 0.464526 | 1.3:+7820267 | MS.gene051502:CDS |
| TGCCCGAGCAGTAGCTTCAA+TGG | 0.468895 | 1.3:-7821326 | None:intergenic |
| TAGTGTATCAATACCTTCAC+TGG | 0.470804 | 1.3:-7821457 | None:intergenic |
| TTCCTTTGATTTCAGGAAGC+GGG | 0.473906 | 1.3:+7822690 | MS.gene051502:intron |
| AATAGGCAGGCCTCGAATCA+TGG | 0.478545 | 1.3:-7822214 | None:intergenic |
| GAAGCTACTGCTCGGGCACT+TGG | 0.480129 | 1.3:+7821331 | MS.gene051502:CDS |
| CAACTACAGATGTTGCCAAA+AGG | 0.481512 | 1.3:+7820253 | MS.gene051502:CDS |
| TGTTGCCAAAAGGGCAATGA+AGG | 0.487028 | 1.3:+7820263 | MS.gene051502:CDS |
| AACTACAGATGTTGCCAAAA+GGG | 0.488345 | 1.3:+7820254 | MS.gene051502:CDS |
| TACCAAAATTGAAGAATGCA+TGG | 0.490489 | 1.3:+7822059 | MS.gene051502:CDS |
| TGGCCTCTGCAATTGTCCCT+GGG | 0.498243 | 1.3:-7822194 | None:intergenic |
| GAGAGATTTAGGGATGGATG+AGG | 0.498586 | 1.3:+7821258 | MS.gene051502:CDS |
| TTCCTGCTGTATTATTGATG+GGG | 0.501628 | 1.3:+7821284 | MS.gene051502:CDS |
| TCCCATTGAAGCTACTGCTC+GGG | 0.505735 | 1.3:+7821324 | MS.gene051502:CDS |
| TTCTCTAATAGGATGAACTA+AGG | 0.511639 | 1.3:+7821236 | MS.gene051502:intron |
| GCCCGAGCAGTAGCTTCAAT+GGG | 0.516727 | 1.3:-7821325 | None:intergenic |
| ACGTGGGGCCGTTCCATAGT+AGG | 0.519039 | 1.3:-7818880 | None:intergenic |
| TAGCGAAAATTGTTGCGGAC+TGG | 0.524664 | 1.3:+7822772 | MS.gene051502:CDS |
| TATGTTGTTGAAAATGGTTG+TGG | 0.536014 | 1.3:+7822723 | MS.gene051502:CDS |
| TATAAAGCCTGTTCGGCCAA+AGG | 0.541804 | 1.3:+7820341 | MS.gene051502:CDS |
| GTCCCATTGAAGCTACTGCT+CGG | 0.543348 | 1.3:+7821323 | MS.gene051502:CDS |
| TTACTAGCTCGTGCATGTCA+TGG | 0.545685 | 1.3:-7822878 | None:intergenic |
| AAAGTACTCTAAATTGCCTA+AGG | 0.546044 | 1.3:+7822746 | MS.gene051502:CDS |
| AGAGGAACGTGTTGCATCAG+TGG | 0.547034 | 1.3:-7820026 | None:intergenic |
| TCCTGCTGTATTATTGATGG+GGG | 0.548155 | 1.3:+7821285 | MS.gene051502:CDS |
| CTTTGTAATAATGCAATCAC+AGG | 0.552893 | 1.3:-7822085 | None:intergenic |
| CTGTGATTGCATTATTACAA+AGG | 0.560129 | 1.3:+7822086 | MS.gene051502:CDS |
| TGTGTGCTCAGACCATAAAT+CGG | 0.560704 | 1.3:-7818787 | None:intergenic |
| GGAATTTGATTGAACGGCCA+AGG | 0.560974 | 1.3:-7818810 | None:intergenic |
| CAACTTCAACATTCATAGCT+CGG | 0.561242 | 1.3:+7818928 | MS.gene051502:CDS |
| ATTGCAGAGGCCATGATTCG+AGG | 0.563068 | 1.3:+7822204 | MS.gene051502:CDS |
| AATCATTTAAAATAATAGGC+AGG | 0.569875 | 1.3:-7822227 | None:intergenic |
| GGAGATTTATTAAATGACGA+GGG | 0.574821 | 1.3:+7821352 | MS.gene051502:CDS |
| CGAACAGGCTTTATAAAGGA+AGG | 0.575344 | 1.3:-7820333 | None:intergenic |
| CAGAACTAAACTAACCATGT+TGG | 0.579591 | 1.3:-7820125 | None:intergenic |
| TGAGAACCACATTACCTGCC+CGG | 0.584401 | 1.3:-7822256 | None:intergenic |
| ATCACAAGAATCTGACCTGT+GGG | 0.585615 | 1.3:-7821379 | None:intergenic |
| TGATTGGAAGATTCCAGTGA+AGG | 0.586288 | 1.3:+7821444 | MS.gene051502:CDS |
| ACTAAACTAACCATGTTGGA+TGG | 0.594783 | 1.3:-7820121 | None:intergenic |
| TTGATGAGTGATACTGGTGG+TGG | 0.596075 | 1.3:+7817969 | None:intergenic |
| CCTGCTGTATTATTGATGGG+GGG | 0.598824 | 1.3:+7821286 | MS.gene051502:CDS |
| ACCAAAATTGAAGAATGCAT+GGG | 0.604354 | 1.3:+7822060 | MS.gene051502:CDS |
| TTAAGCTGTACAAGAATACT+CGG | 0.605087 | 1.3:-7822919 | None:intergenic |
| TGAGCACATGCCATCCAACA+TGG | 0.607260 | 1.3:+7820111 | MS.gene051502:CDS |
| TAAAGGAAGGTCTAACAGGT+AGG | 0.611675 | 1.3:-7820320 | None:intergenic |
| GGTCAGATTCTTGTGATCTG+TGG | 0.618567 | 1.3:+7821385 | MS.gene051502:CDS |
| AAAATGCATTAAAACTAGCA+AGG | 0.621362 | 1.3:+7822832 | MS.gene051502:CDS |
| TGGCCCAGGGACAATTGCAG+AGG | 0.622682 | 1.3:+7822191 | MS.gene051502:CDS |
| ACTAAGGAGAGATTTAGGGA+TGG | 0.645174 | 1.3:+7821252 | MS.gene051502:CDS |
| TGGAGATTTATTAAATGACG+AGG | 0.645340 | 1.3:+7821351 | MS.gene051502:CDS |
| TGGTGAAACATGGACCGTTG+TGG | 0.648644 | 1.3:+7818850 | MS.gene051502:CDS |
| TATGGTCTGAGCACACACCT+TGG | 0.651270 | 1.3:+7818793 | MS.gene051502:CDS |
| CTTGACCTCAAAATGCGAAG+AGG | 0.652018 | 1.3:-7820044 | None:intergenic |
| GAGATTTATTAAATGACGAG+GGG | 0.652249 | 1.3:+7821353 | MS.gene051502:CDS |
| GGAGATAGCGAAAATTGTTG+CGG | 0.653478 | 1.3:+7822767 | MS.gene051502:CDS |
| TTGACTGATGAACTAGACGT+GGG | 0.657276 | 1.3:-7818896 | None:intergenic |
| TTTGACTGATGAACTAGACG+TGG | 0.659531 | 1.3:-7818897 | None:intergenic |
| GATCACAAGAATCTGACCTG+TGG | 0.659557 | 1.3:-7821380 | None:intergenic |
| GAGGATGACCTACTATGGAA+CGG | 0.659969 | 1.3:+7818872 | MS.gene051502:CDS |
| AGATTTATTAAATGACGAGG+GGG | 0.661667 | 1.3:+7821354 | MS.gene051502:CDS |
| GCTCAAATCTGTAATAACTG+TGG | 0.689167 | 1.3:-7820093 | None:intergenic |
| TGAAACATGGACCGTTGTGG+AGG | 0.709765 | 1.3:+7818853 | MS.gene051502:CDS |
| TAGTAGGTCATCCTCCACAA+CGG | 0.715366 | 1.3:-7818864 | None:intergenic |
| TGACTGATGAACTAGACGTG+GGG | 0.741650 | 1.3:-7818895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGTTTGATATTTATTAT+GGG | + | chr1.3:7820918-7820937 | MS.gene051502:intron | 10.0% |
| !! | TAAATAAATAAATGTTGATA+TGG | + | chr1.3:7821987-7822006 | MS.gene051502:intron | 10.0% |
| !!! | ATGTAATCATTTAAAATAAT+AGG | - | chr1.3:7822234-7822253 | None:intergenic | 10.0% |
| !! | AAATAAAAAAATTCATGACA+AGG | - | chr1.3:7822299-7822318 | None:intergenic | 15.0% |
| !! | AACCTCAAATAATAAATAAA+CGG | - | chr1.3:7820648-7820667 | None:intergenic | 15.0% |
| !! | AAGATATTAAGTGTAAAATA+GGG | - | chr1.3:7820814-7820833 | None:intergenic | 15.0% |
| !! | ATTAGATACTAGTTAAATTT+AGG | + | chr1.3:7822580-7822599 | MS.gene051502:intron | 15.0% |
| !! | ATTGGTAAAAACAATAATTT+AGG | - | chr1.3:7822018-7822037 | None:intergenic | 15.0% |
| !! | CAATTGTTTGATATTTATTA+TGG | + | chr1.3:7820917-7820936 | MS.gene051502:intron | 15.0% |
| !! | TTGGTAAAAACAATAATTTA+GGG | - | chr1.3:7822017-7822036 | None:intergenic | 15.0% |
| !!! | ATTTTTAGGTAAAAAAGTTA+GGG | + | chr1.3:7818346-7818365 | MS.gene051502:intron | 15.0% |
| !!! | CTCAAAATTCAAATTTTTAA+TGG | + | chr1.3:7820880-7820899 | MS.gene051502:intron | 15.0% |
| !!! | TCTTATTTCTTGTATTTTTT+AGG | + | chr1.3:7820199-7820218 | MS.gene051502:intron | 15.0% |
| !!! | TTCACATTTTTAATTATTCT+GGG | - | chr1.3:7821749-7821768 | None:intergenic | 15.0% |
| !!! | TTTCACATTTTTAATTATTC+TGG | - | chr1.3:7821750-7821769 | None:intergenic | 15.0% |
| !! | GAAGATATTAAGTGTAAAAT+AGG | - | chr1.3:7820815-7820834 | None:intergenic | 20.0% |
| !! | TAACTAACAACTTAAAAACA+GGG | - | chr1.3:7819113-7819132 | None:intergenic | 20.0% |
| !! | TAGTAGAATGAGATTAAAAT+AGG | + | chr1.3:7818472-7818491 | MS.gene051502:intron | 20.0% |
| !! | TATTTCATGTTTATGCAATT+TGG | + | chr1.3:7821176-7821195 | MS.gene051502:intron | 20.0% |
| !! | TGGTAAAAACAATAATTTAG+GGG | - | chr1.3:7822016-7822035 | None:intergenic | 20.0% |
| !! | TGTATAAAACAATTCAGAAA+AGG | - | chr1.3:7820440-7820459 | None:intergenic | 20.0% |
| !! | TTGAAAATAACTTTATACGT+AGG | + | chr1.3:7819707-7819726 | MS.gene051502:intron | 20.0% |
| !! | TTGTTAAATATGATTGTTCA+TGG | + | chr1.3:7820769-7820788 | MS.gene051502:intron | 20.0% |
| !! | TTTGACGATTAATTTATGTA+CGG | + | chr1.3:7818596-7818615 | MS.gene051502:intron | 20.0% |
| !!! | AATCATTTAAAATAATAGGC+AGG | - | chr1.3:7822230-7822249 | None:intergenic | 20.0% |
| !!! | AATTGTTTTATACAATGAGA+TGG | + | chr1.3:7820446-7820465 | MS.gene051502:intron | 20.0% |
| !!! | ATTGTTTTATACAATGAGAT+GGG | + | chr1.3:7820447-7820466 | MS.gene051502:intron | 20.0% |
| !!! | ATTGTTTTTACCAATGTTTT+AGG | + | chr1.3:7822023-7822042 | MS.gene051502:intron | 20.0% |
| !!! | ATTTTAAATGATTACATTGC+CGG | + | chr1.3:7822237-7822256 | MS.gene051502:CDS | 20.0% |
| !!! | GATTTTTAGGTAAAAAAGTT+AGG | + | chr1.3:7818345-7818364 | MS.gene051502:intron | 20.0% |
| !!! | GTTGTTTTTGTAAGTTATTT+TGG | + | chr1.3:7818443-7818462 | MS.gene051502:intron | 20.0% |
| !!! | TTACTTCAATACTCTTATTT+AGG | - | chr1.3:7821703-7821722 | None:intergenic | 20.0% |
| ! | AAAATGCATTAAAACTAGCA+AGG | + | chr1.3:7822832-7822851 | MS.gene051502:CDS | 25.0% |
| ! | AACTTATCAGTTATCCATTA+CGG | - | chr1.3:7819038-7819057 | None:intergenic | 25.0% |
| ! | AAGAAAATGACAGAATTGAA+TGG | + | chr1.3:7818150-7818169 | MS.gene051502:intron | 25.0% |
| ! | AATAACATTCTCTTAGAATC+TGG | - | chr1.3:7819784-7819803 | None:intergenic | 25.0% |
| ! | ATAAATAAACGGCAAAATCA+TGG | - | chr1.3:7820637-7820656 | None:intergenic | 25.0% |
| ! | ATATTGTTTGAATGATCCTA+TGG | - | chr1.3:7819136-7819155 | None:intergenic | 25.0% |
| ! | CAAACCCAAATAAAGATTTA+TGG | + | chr1.3:7820297-7820316 | MS.gene051502:CDS | 25.0% |
| ! | CTAAAATTATAATAGTCCGT+TGG | - | chr1.3:7820967-7820986 | None:intergenic | 25.0% |
| ! | GCAAAAAAAAAAGTTACTCA+TGG | + | chr1.3:7821620-7821639 | MS.gene051502:intron | 25.0% |
| ! | GTAACTAACAACTTAAAAAC+AGG | - | chr1.3:7819114-7819133 | None:intergenic | 25.0% |
| ! | GTAATTAGAGGAATGAAATA+TGG | + | chr1.3:7818300-7818319 | MS.gene051502:intron | 25.0% |
| ! | TATTGATACACTAATTGTTC+CGG | + | chr1.3:7821467-7821486 | MS.gene051502:intron | 25.0% |
| ! | TTAAATATGATTGTTCATGG+TGG | + | chr1.3:7820772-7820791 | MS.gene051502:intron | 25.0% |
| ! | TTAGATATTCATTGTACAAG+AGG | - | chr1.3:7821868-7821887 | None:intergenic | 25.0% |
| ! | TTATAGTTATAATTGCTGAG+CGG | + | chr1.3:7821777-7821796 | MS.gene051502:intron | 25.0% |
| !! | AAGATATTTTTCATCCAATG+TGG | - | chr1.3:7819689-7819708 | None:intergenic | 25.0% |
| !! | ACAGAAAGTTTTCTTTCTTA+TGG | + | chr1.3:7821941-7821960 | MS.gene051502:intron | 25.0% |
| !! | ACCAAAAAACTATAGCTTTT+AGG | - | chr1.3:7818834-7818853 | None:intergenic | 25.0% |
| !! | AGATATTTTTCATCCAATGT+GGG | - | chr1.3:7819688-7819707 | None:intergenic | 25.0% |
| !! | ATGAATAATTTGCAAGTGAA+TGG | + | chr1.3:7818629-7818648 | MS.gene051502:intron | 25.0% |
| !! | ATGTGCAATATACAGATTTT+CGG | + | chr1.3:7819262-7819281 | MS.gene051502:intron | 25.0% |
| !! | CAGAAAGTTTTCTTTCTTAT+GGG | + | chr1.3:7821942-7821961 | MS.gene051502:intron | 25.0% |
| !! | GTTTAGTAATTCAACTTGTT+AGG | + | chr1.3:7820500-7820519 | MS.gene051502:intron | 25.0% |
| !! | TAGGCCATAAATCTTTATTT+GGG | - | chr1.3:7820304-7820323 | None:intergenic | 25.0% |
| !! | TCAGACTATAGGTAATATTT+TGG | - | chr1.3:7820171-7820190 | None:intergenic | 25.0% |
| !! | TGATTATGTAAAATCGATTC+TGG | + | chr1.3:7818528-7818547 | MS.gene051502:intron | 25.0% |
| !! | TGCCGTTTATTTATTATTTG+AGG | + | chr1.3:7820643-7820662 | MS.gene051502:intron | 25.0% |
| !! | TTCAATACTCTTATTTAGGA+CGG | - | chr1.3:7821699-7821718 | None:intergenic | 25.0% |
| !! | TTTTAAATGATTACATTGCC+GGG | + | chr1.3:7822238-7822257 | MS.gene051502:CDS | 25.0% |
| !!! | AATGGTAATTTTAGGATTGA+GGG | + | chr1.3:7818647-7818666 | MS.gene051502:intron | 25.0% |
| !!! | ATTTTGTTTGTTGAGTAATG+TGG | + | chr1.3:7818394-7818413 | MS.gene051502:intron | 25.0% |
| !!! | CTTTTAGGAATTTGATTGAA+CGG | - | chr1.3:7818819-7818838 | None:intergenic | 25.0% |
| !!! | TATAGTTTTTTGGTGAAACA+TGG | + | chr1.3:7818840-7818859 | MS.gene051502:CDS | 25.0% |
| !!! | TCCTAAAAGCTATAGTTTTT+TGG | + | chr1.3:7818830-7818849 | MS.gene051502:CDS | 25.0% |
| !!! | TCTTGTATATTTTTACAGTG+AGG | + | chr1.3:7819953-7819972 | MS.gene051502:intron | 25.0% |
| !!! | TCTTTTTTTGTTGCTTTTGT+AGG | + | chr1.3:7822167-7822186 | MS.gene051502:intron | 25.0% |
| !!! | TGCTAGTTTTAATGCATTTT+GGG | - | chr1.3:7822832-7822851 | None:intergenic | 25.0% |
| !!! | TTGCTAGTTTTAATGCATTT+TGG | - | chr1.3:7822833-7822852 | None:intergenic | 25.0% |
| !!! | TTTAAGTTGTTAGTTACCAT+AGG | + | chr1.3:7819117-7819136 | MS.gene051502:intron | 25.0% |
| !!! | TTTTAGTTTAGTGTACATGA+TGG | + | chr1.3:7820981-7821000 | MS.gene051502:intron | 25.0% |
| AAAAAATGAAGTAGACGAGT+AGG | + | chr1.3:7821721-7821740 | MS.gene051502:intron | 30.0% | |
| ACAAACTCAGTTCTATTGAT+TGG | + | chr1.3:7821428-7821447 | MS.gene051502:CDS | 30.0% | |
| ACAACCATATTCAATCACTT+GGG | - | chr1.3:7822657-7822676 | None:intergenic | 30.0% | |
| ACAATCTTAGAACTTGAGTT+TGG | - | chr1.3:7819559-7819578 | None:intergenic | 30.0% | |
| ACAATTCAGAAAAGGTCATT+TGG | - | chr1.3:7820432-7820451 | None:intergenic | 30.0% | |
| ACCAAAATTGAAGAATGCAT+GGG | + | chr1.3:7822060-7822079 | MS.gene051502:CDS | 30.0% | |
| AGATGTCAAAATCAGACTAT+AGG | - | chr1.3:7820182-7820201 | None:intergenic | 30.0% | |
| AGATTTATTAAATGACGAGG+GGG | + | chr1.3:7821354-7821373 | MS.gene051502:CDS | 30.0% | |
| ATAAATGCATGTATGATGTG+TGG | - | chr1.3:7819238-7819257 | None:intergenic | 30.0% | |
| ATACAATGAGATGGGATAAT+AGG | + | chr1.3:7820455-7820474 | MS.gene051502:intron | 30.0% | |
| ATGAACTAAGGAGAGATTTA+GGG | + | chr1.3:7821248-7821267 | MS.gene051502:CDS | 30.0% | |
| ATTTATGACAACAATGAGAC+GGG | + | chr1.3:7820553-7820572 | MS.gene051502:intron | 30.0% | |
| CAAACATCTTTATATGTGGA+AGG | + | chr1.3:7819483-7819502 | MS.gene051502:intron | 30.0% | |
| CAATTCAGAAAAGGTCATTT+GGG | - | chr1.3:7820431-7820450 | None:intergenic | 30.0% | |
| CATTTATGACAACAATGAGA+CGG | + | chr1.3:7820552-7820571 | MS.gene051502:intron | 30.0% | |
| CTATTAACCATGTGTTTGAT+TGG | + | chr1.3:7821117-7821136 | MS.gene051502:intron | 30.0% | |
| CTGTGATTGCATTATTACAA+AGG | + | chr1.3:7822086-7822105 | MS.gene051502:CDS | 30.0% | |
| CTTTGTAATAATGCAATCAC+AGG | - | chr1.3:7822088-7822107 | None:intergenic | 30.0% | |
| GAGATTTATTAAATGACGAG+GGG | + | chr1.3:7821353-7821372 | MS.gene051502:CDS | 30.0% | |
| GATGCATATATTGTTTGTTC+TGG | + | chr1.3:7819862-7819881 | MS.gene051502:intron | 30.0% | |
| GATTGCATTATTACAAAGGT+TGG | + | chr1.3:7822090-7822109 | MS.gene051502:intron | 30.0% | |
| GGAGATTTATTAAATGACGA+GGG | + | chr1.3:7821352-7821371 | MS.gene051502:CDS | 30.0% | |
| GTAGGCCATAAATCTTTATT+TGG | - | chr1.3:7820305-7820324 | None:intergenic | 30.0% | |
| TACCAAAATTGAAGAATGCA+TGG | + | chr1.3:7822059-7822078 | MS.gene051502:CDS | 30.0% | |
| TACTAGTTAAATTTAGGCTG+AGG | + | chr1.3:7822586-7822605 | MS.gene051502:intron | 30.0% | |
| TATGTTGTTGAAAATGGTTG+TGG | + | chr1.3:7822723-7822742 | MS.gene051502:CDS | 30.0% | |
| TCCACATATAAAGATGTTTG+CGG | - | chr1.3:7819483-7819502 | None:intergenic | 30.0% | |
| TGAAGTTATTTGACAAGAAC+TGG | - | chr1.3:7818982-7819001 | None:intergenic | 30.0% | |
| TGAATTAGTATATGCCGTAA+TGG | + | chr1.3:7819021-7819040 | MS.gene051502:intron | 30.0% | |
| TGGAGATTTATTAAATGACG+AGG | + | chr1.3:7821351-7821370 | MS.gene051502:CDS | 30.0% | |
| TTAAGCTGTACAAGAATACT+CGG | - | chr1.3:7822922-7822941 | None:intergenic | 30.0% | |
| TTACAATAAAAATGACCGCA+CGG | + | chr1.3:7819321-7819340 | MS.gene051502:intron | 30.0% | |
| TTAGGTAAAAAAGTTAGGGT+GGG | + | chr1.3:7818350-7818369 | MS.gene051502:intron | 30.0% | |
| TTCTCTAATAGGATGAACTA+AGG | + | chr1.3:7821236-7821255 | MS.gene051502:intron | 30.0% | |
| TTCTTGACTTCTTATAGCTA+TGG | + | chr1.3:7820373-7820392 | MS.gene051502:intron | 30.0% | |
| TTGTGAAATAGTGTCTATAG+CGG | - | chr1.3:7822440-7822459 | None:intergenic | 30.0% | |
| TTTAGGTAAAAAAGTTAGGG+TGG | + | chr1.3:7818349-7818368 | MS.gene051502:intron | 30.0% | |
| TTTATAAAGGAAGGTCTAAC+AGG | - | chr1.3:7820327-7820346 | None:intergenic | 30.0% | |
| ! | AAAGTACTCTAAATTGCCTA+AGG | + | chr1.3:7822746-7822765 | MS.gene051502:CDS | 30.0% |
| ! | AAATCGATTCTGGTTAAAAG+TGG | + | chr1.3:7818538-7818557 | MS.gene051502:intron | 30.0% |
| ! | AACACTGGTTAAATTTAGAG+TGG | + | chr1.3:7822544-7822563 | MS.gene051502:intron | 30.0% |
| ! | AATCGATTCTGGTTAAAAGT+GGG | + | chr1.3:7818539-7818558 | MS.gene051502:intron | 30.0% |
| ! | AATCTAGAACATGCATATAC+TGG | - | chr1.3:7821513-7821532 | None:intergenic | 30.0% |
| ! | ACAACCATTTTCAACAACAT+AGG | - | chr1.3:7822724-7822743 | None:intergenic | 30.0% |
| ! | ACAATTTTGAACACAGAATC+CGG | - | chr1.3:7822858-7822877 | None:intergenic | 30.0% |
| ! | ACATCATTTCCTTTGATTTC+AGG | + | chr1.3:7822683-7822702 | MS.gene051502:intron | 30.0% |
| ! | CAACCATTTTCAACAACATA+GGG | - | chr1.3:7822723-7822742 | None:intergenic | 30.0% |
| ! | CAGTAGTTATTGTAATTTGC+TGG | + | chr1.3:7819835-7819854 | MS.gene051502:intron | 30.0% |
| ! | GGTTCTGATTCTTTAACTAA+AGG | + | chr1.3:7820939-7820958 | MS.gene051502:intron | 30.0% |
| ! | TAACCAGTGTTGTTAAATAG+TGG | - | chr1.3:7822535-7822554 | None:intergenic | 30.0% |
| ! | TGCAAGTGAATGGTAATTTT+AGG | + | chr1.3:7818639-7818658 | MS.gene051502:intron | 30.0% |
| ! | TGCACACTGATTATTATATC+AGG | - | chr1.3:7820005-7820024 | None:intergenic | 30.0% |
| ! | TTAAGAGCAAGGAGATTTTT+AGG | + | chr1.3:7818332-7818351 | MS.gene051502:intron | 30.0% |
| !! | AGGTGTTTATTACCGATTTA+TGG | + | chr1.3:7818775-7818794 | MS.gene051502:intron | 30.0% |
| !! | TTACCAATGTTTTAGGTCAT+GGG | + | chr1.3:7822030-7822049 | MS.gene051502:intron | 30.0% |
| !! | TTTACCAATGTTTTAGGTCA+TGG | + | chr1.3:7822029-7822048 | MS.gene051502:intron | 30.0% |
| !!! | CTAACTTGGAACTAGTTTTT+TGG | + | chr1.3:7818564-7818583 | MS.gene051502:intron | 30.0% |
| !!! | GAATGGTAATTTTAGGATTG+AGG | + | chr1.3:7818646-7818665 | MS.gene051502:intron | 30.0% |
| !!! | GCTGCTTTTTATCAAGAATA+TGG | + | chr1.3:7818020-7818039 | MS.gene051502:CDS | 30.0% |
| !!! | GTTGTGTTTTGTTTACACTT+TGG | + | chr1.3:7818738-7818757 | MS.gene051502:intron | 30.0% |
| AAAAATTCATGACAAGGTCG+AGG | - | chr1.3:7822293-7822312 | None:intergenic | 35.0% | |
| AACTACAGATGTTGCCAAAA+GGG | + | chr1.3:7820254-7820273 | MS.gene051502:CDS | 35.0% | |
| AACTTGGCAATATTTCAGCA+CGG | + | chr1.3:7819345-7819364 | MS.gene051502:intron | 35.0% | |
| AATCCCATGACCTAAAACAT+TGG | - | chr1.3:7822036-7822055 | None:intergenic | 35.0% | |
| AATTTCAGAGTTGCAAGTTG+TGG | + | chr1.3:7822361-7822380 | MS.gene051502:intron | 35.0% | |
| ACCCTTAGCAAGAAAGAAAA+TGG | - | chr1.3:7820586-7820605 | None:intergenic | 35.0% | |
| ACTAAACTAACCATGTTGGA+TGG | - | chr1.3:7820124-7820143 | None:intergenic | 35.0% | |
| ACTATAGCACTGTTATGCAA+CGG | - | chr1.3:7822416-7822435 | None:intergenic | 35.0% | |
| ACTTCTCCATATGCTAACTA+CGG | - | chr1.3:7820837-7820856 | None:intergenic | 35.0% | |
| AGAATATGGCGATGATTATC+AGG | + | chr1.3:7818034-7818053 | MS.gene051502:CDS | 35.0% | |
| AGTATAATATCACGTGTCAG+AGG | + | chr1.3:7819921-7819940 | MS.gene051502:intron | 35.0% | |
| ATTGTATCAGAGCCTATTCA+AGG | + | chr1.3:7819574-7819593 | MS.gene051502:intron | 35.0% | |
| CAACTTCAACATTCATAGCT+CGG | + | chr1.3:7818928-7818947 | MS.gene051502:CDS | 35.0% | |
| CACAACCATATTCAATCACT+TGG | - | chr1.3:7822658-7822677 | None:intergenic | 35.0% | |
| CAGAACTAAACTAACCATGT+TGG | - | chr1.3:7820128-7820147 | None:intergenic | 35.0% | |
| CATCAACAACTGTCATAATG+AGG | - | chr1.3:7822144-7822163 | None:intergenic | 35.0% | |
| CATCTATTGTTAATCTGAGC+TGG | + | chr1.3:7820707-7820726 | MS.gene051502:intron | 35.0% | |
| CCACATATAAAGATGTTTGC+GGG | - | chr1.3:7819482-7819501 | None:intergenic | 35.0% | |
| CGTCTCATTGTTGTCATAAA+TGG | - | chr1.3:7820554-7820573 | None:intergenic | 35.0% | |
| CTAACTCAACCTTACAAAAC+CGG | - | chr1.3:7819754-7819773 | None:intergenic | 35.0% | |
| CTCATTATGACAGTTGTTGA+TGG | + | chr1.3:7822142-7822161 | MS.gene051502:intron | 35.0% | |
| CTGTCATGCACTTTATTGTT+AGG | - | chr1.3:7819395-7819414 | None:intergenic | 35.0% | |
| CTTCCTGCTGTATTATTGAT+GGG | + | chr1.3:7821283-7821302 | MS.gene051502:CDS | 35.0% | |
| CTTCCTTTATAAAGCCTGTT+CGG | + | chr1.3:7820334-7820353 | MS.gene051502:CDS | 35.0% | |
| GATGAACTAAGGAGAGATTT+AGG | + | chr1.3:7821247-7821266 | MS.gene051502:CDS | 35.0% | |
| GCTATAAGAAGTCAAGAACA+TGG | - | chr1.3:7820371-7820390 | None:intergenic | 35.0% | |
| GCTCAAATCTGTAATAACTG+TGG | - | chr1.3:7820096-7820115 | None:intergenic | 35.0% | |
| GCTCAGATTAACAATAGATG+TGG | - | chr1.3:7820707-7820726 | None:intergenic | 35.0% | |
| GTTCCCTATGTTGTTGAAAA+TGG | + | chr1.3:7822717-7822736 | MS.gene051502:CDS | 35.0% | |
| GTTTCATTGTCGTTATGAAC+TGG | + | chr1.3:7819175-7819194 | MS.gene051502:intron | 35.0% | |
| TAGATTTGACAAATGGAGCA+TGG | - | chr1.3:7819639-7819658 | None:intergenic | 35.0% | |
| TAGCCACTATTTAACAACAC+TGG | + | chr1.3:7822529-7822548 | MS.gene051502:intron | 35.0% | |
| TAGGTAAAAAAGTTAGGGTG+GGG | + | chr1.3:7818351-7818370 | MS.gene051502:intron | 35.0% | |
| TAGTGTATCAATACCTTCAC+TGG | - | chr1.3:7821460-7821479 | None:intergenic | 35.0% | |
| TATCTTCCGTAGTTAGCATA+TGG | + | chr1.3:7820828-7820847 | MS.gene051502:intron | 35.0% | |
| TATGAACTGGATTTCTCTAG+TGG | + | chr1.3:7819188-7819207 | MS.gene051502:intron | 35.0% | |
| TCATGCACTTTATTGTTAGG+TGG | - | chr1.3:7819392-7819411 | None:intergenic | 35.0% | |
| TCTTATAGCTATGGCATGAT+TGG | + | chr1.3:7820382-7820401 | MS.gene051502:intron | 35.0% | |
| TCTTCCTGCTGTATTATTGA+TGG | + | chr1.3:7821282-7821301 | MS.gene051502:CDS | 35.0% | |
| TCTTTAACTAAAGGCTCCAA+CGG | + | chr1.3:7820948-7820967 | MS.gene051502:intron | 35.0% | |
| TGACTCATACATGAAAGTCA+GGG | + | chr1.3:7819069-7819088 | MS.gene051502:intron | 35.0% | |
| TGTCTGTGTTAGGTAATTAG+AGG | + | chr1.3:7818288-7818307 | MS.gene051502:intron | 35.0% | |
| TGTTTGATTGGTATCTGCTT+TGG | + | chr1.3:7821129-7821148 | MS.gene051502:intron | 35.0% | |
| TTCCTGCTGTATTATTGATG+GGG | + | chr1.3:7821284-7821303 | MS.gene051502:CDS | 35.0% | |
| ! | AATACTCTTATTTAGGACGG+TGG | - | chr1.3:7821696-7821715 | None:intergenic | 35.0% |
| ! | ACAATTTTCGCTATCTCCTT+AGG | - | chr1.3:7822765-7822784 | None:intergenic | 35.0% |
| ! | ATACTCTTATTTAGGACGGT+GGG | - | chr1.3:7821695-7821714 | None:intergenic | 35.0% |
| ! | ATAGACTGTTGTCTAGTCTT+AGG | + | chr1.3:7821544-7821563 | MS.gene051502:intron | 35.0% |
| ! | ATATGATTGTTCATGGTGGA+TGG | + | chr1.3:7820776-7820795 | MS.gene051502:intron | 35.0% |
| ! | ATCGATTCTGGTTAAAAGTG+GGG | + | chr1.3:7818540-7818559 | MS.gene051502:intron | 35.0% |
| ! | GTGTTGTTAAATAGTGGCTA+TGG | - | chr1.3:7822529-7822548 | None:intergenic | 35.0% |
| ! | GTTTTCTTTCTTATGGGTCA+AGG | + | chr1.3:7821948-7821967 | MS.gene051502:intron | 35.0% |
| ! | TCCCATGCATTCTTCAATTT+TGG | - | chr1.3:7822064-7822083 | None:intergenic | 35.0% |
| ! | TGTATTGTCGACTACAATCT+TGG | + | chr1.3:7820611-7820630 | MS.gene051502:intron | 35.0% |
| ! | TTTCCTTTGATTTCAGGAAG+CGG | + | chr1.3:7822689-7822708 | MS.gene051502:intron | 35.0% |
| ! | TTTTACAGTGAGGTTGCTAA+AGG | + | chr1.3:7819963-7819982 | MS.gene051502:intron | 35.0% |
| ! | TTTTCTTTCTTGCTAAGGGT+AGG | + | chr1.3:7820586-7820605 | MS.gene051502:intron | 35.0% |
| !! | AAAGTTAGCTTGCACTATTG+TGG | + | chr1.3:7822323-7822342 | MS.gene051502:intron | 35.0% |
| !! | AGCCATTTTCTTTCTTGCTA+AGG | + | chr1.3:7820581-7820600 | MS.gene051502:intron | 35.0% |
| !! | CAACATGGTTAGTTTAGTTC+TGG | + | chr1.3:7820126-7820145 | MS.gene051502:intron | 35.0% |
| !! | GCCATTTTCTTTCTTGCTAA+GGG | + | chr1.3:7820582-7820601 | MS.gene051502:intron | 35.0% |
| !!! | AATTTTAGGATTGAGGGTCA+TGG | + | chr1.3:7818653-7818672 | MS.gene051502:intron | 35.0% |
| !!! | GGACATTGCTTTTAGTTCAT+CGG | - | chr1.3:7822811-7822830 | None:intergenic | 35.0% |
| !!! | TTTTTGTTGCTTTTGTAGGC+TGG | + | chr1.3:7822171-7822190 | MS.gene051502:intron | 35.0% |
| AATATTGCCAAGTTACCGTG+CGG | - | chr1.3:7819339-7819358 | None:intergenic | 40.0% | |
| ACTAAGGAGAGATTTAGGGA+TGG | + | chr1.3:7821252-7821271 | MS.gene051502:CDS | 40.0% | |
| AGAGCCTATTCAAGGTCTAT+TGG | + | chr1.3:7819582-7819601 | MS.gene051502:intron | 40.0% | |
| ATCACAAGAATCTGACCTGT+GGG | - | chr1.3:7821382-7821401 | None:intergenic | 40.0% | |
| CAACTACAGATGTTGCCAAA+AGG | + | chr1.3:7820253-7820272 | MS.gene051502:CDS | 40.0% | |
| CCCGCAAACATCTTTATATG+TGG | + | chr1.3:7819479-7819498 | MS.gene051502:intron | 40.0% | |
| CTCACACTAGAAACTTTGCT+AGG | - | chr1.3:7821832-7821851 | None:intergenic | 40.0% | |
| CTTCCACATTGGATGAGATT+AGG | + | chr1.3:7819456-7819475 | MS.gene051502:intron | 40.0% | |
| GAGCCTATTCAAGGTCTATT+GGG | + | chr1.3:7819583-7819602 | MS.gene051502:intron | 40.0% | |
| GATTGTCGAGCTTCTCTAAT+AGG | + | chr1.3:7821225-7821244 | MS.gene051502:intron | 40.0% | |
| GCAGATACCAATCAAACACA+TGG | - | chr1.3:7821127-7821146 | None:intergenic | 40.0% | |
| GGAGATAGCGAAAATTGTTG+CGG | + | chr1.3:7822767-7822786 | MS.gene051502:CDS | 40.0% | |
| GTCATGGAATGTTACTGTGA+AGG | + | chr1.3:7818669-7818688 | MS.gene051502:intron | 40.0% | |
| GTGACTCATACATGAAAGTC+AGG | + | chr1.3:7819068-7819087 | MS.gene051502:intron | 40.0% | |
| TAAAGGAAGGTCTAACAGGT+AGG | - | chr1.3:7820323-7820342 | None:intergenic | 40.0% | |
| TACGCCCAAGTGATTGAATA+TGG | + | chr1.3:7822650-7822669 | MS.gene051502:intron | 40.0% | |
| TCAAGAACATGGCATACCTT+TGG | - | chr1.3:7820360-7820379 | None:intergenic | 40.0% | |
| TCAAGTAAAATCACAACCGC+CGG | - | chr1.3:7821489-7821508 | None:intergenic | 40.0% | |
| TCCTACAAAACTAGCTCGTA+AGG | - | chr1.3:7819518-7819537 | None:intergenic | 40.0% | |
| TCCTGCTGTATTATTGATGG+GGG | + | chr1.3:7821285-7821304 | MS.gene051502:CDS | 40.0% | |
| TGATACACTAATTGTTCCGG+CGG | + | chr1.3:7821470-7821489 | MS.gene051502:intron | 40.0% | |
| TGATTGGAAGATTCCAGTGA+AGG | + | chr1.3:7821444-7821463 | MS.gene051502:CDS | 40.0% | |
| TGCAACTGCAGGTAATAAGA+GGG | - | chr1.3:7819431-7819450 | None:intergenic | 40.0% | |
| TGCATTAAAACTAGCAAGGC+CGG | + | chr1.3:7822836-7822855 | MS.gene051502:CDS | 40.0% | |
| TGTGTGCTCAGACCATAAAT+CGG | - | chr1.3:7818790-7818809 | None:intergenic | 40.0% | |
| TTGACTGATGAACTAGACGT+GGG | - | chr1.3:7818899-7818918 | None:intergenic | 40.0% | |
| TTGCAACTGCAGGTAATAAG+AGG | - | chr1.3:7819432-7819451 | None:intergenic | 40.0% | |
| TTTGACTGATGAACTAGACG+TGG | - | chr1.3:7818900-7818919 | None:intergenic | 40.0% | |
| ! | ATGAAAGTCAGGGCATTAAC+TGG | + | chr1.3:7819079-7819098 | MS.gene051502:intron | 40.0% |
| ! | CACGCTCTAGATTTGACAAA+TGG | - | chr1.3:7819646-7819665 | None:intergenic | 40.0% |
| ! | CACGGTTCGGATTTGATATT+TGG | + | chr1.3:7819363-7819382 | MS.gene051502:intron | 40.0% |
| ! | CGAACAGGCTTTATAAAGGA+AGG | - | chr1.3:7820336-7820355 | None:intergenic | 40.0% |
| ! | CTTTTGGCAACATCTGTAGT+TGG | - | chr1.3:7820255-7820274 | None:intergenic | 40.0% |
| ! | GAGAGATCAGACTTGATAAC+TGG | + | chr1.3:7820741-7820760 | MS.gene051502:intron | 40.0% |
| ! | TCGATTCTGGTTAAAAGTGG+GGG | + | chr1.3:7818541-7818560 | MS.gene051502:intron | 40.0% |
| ! | TGTCAAATCTAGAGCGTGAA+GGG | + | chr1.3:7819648-7819667 | MS.gene051502:intron | 40.0% |
| ! | TTCCTTTGATTTCAGGAAGC+GGG | + | chr1.3:7822690-7822709 | MS.gene051502:intron | 40.0% |
| ! | TTGTCAAATCTAGAGCGTGA+AGG | + | chr1.3:7819647-7819666 | MS.gene051502:intron | 40.0% |
| !! | AAAATTGTTGCGGACTGGTT+TGG | + | chr1.3:7822777-7822796 | MS.gene051502:CDS | 40.0% |
| !! | CGGTTTTGTAAGGTTGAGTT+AGG | + | chr1.3:7819752-7819771 | MS.gene051502:intron | 40.0% |
| !! | CTTTGGAGTTAATGCTATGC+AGG | + | chr1.3:7818755-7818774 | MS.gene051502:intron | 40.0% |
| !! | GGTGCTTTTGTTTAAGAGCA+AGG | + | chr1.3:7818321-7818340 | MS.gene051502:intron | 40.0% |
| !! | TGATCAGAAGTGTCTGTGTT+AGG | + | chr1.3:7818278-7818297 | MS.gene051502:intron | 40.0% |
| !! | TTCATAGCTCGGTGAGATTT+TGG | + | chr1.3:7818939-7818958 | MS.gene051502:intron | 40.0% |
| !!! | GCTTTTAGTTCATCGGCTTT+TGG | - | chr1.3:7822804-7822823 | None:intergenic | 40.0% |
| !!! | TACGAGCTAGTTTTGTAGGA+TGG | + | chr1.3:7819518-7819537 | MS.gene051502:intron | 40.0% |
| !!! | TCTTCGCATTTTGAGGTCAA+GGG | + | chr1.3:7820046-7820065 | MS.gene051502:CDS | 40.0% |
| AAAATGACCGCACGGTAACT+TGG | + | chr1.3:7819329-7819348 | MS.gene051502:intron | 45.0% | |
| AAACTAGCTCGTAAGGCAAG+AGG | - | chr1.3:7819511-7819530 | None:intergenic | 45.0% | |
| AAATGATTACATTGCCGGGC+AGG | + | chr1.3:7822242-7822261 | MS.gene051502:CDS | 45.0% | |
| AAGGTTGGATCTCATTGTCG+CGG | + | chr1.3:7822105-7822124 | MS.gene051502:intron | 45.0% | |
| AGTGTGTGGTGTCTATGTCA+GGG | - | chr1.3:7818230-7818249 | None:intergenic | 45.0% | |
| ATCAAGTCTGATCTCTCCCT+AGG | - | chr1.3:7820738-7820757 | None:intergenic | 45.0% | |
| CCTGCTGTATTATTGATGGG+GGG | + | chr1.3:7821286-7821305 | MS.gene051502:CDS | 45.0% | |
| CTATCATGTCTCCCACTACT+GGG | + | chr1.3:7819613-7819632 | MS.gene051502:intron | 45.0% | |
| CTTGACCTCAAAATGCGAAG+AGG | - | chr1.3:7820047-7820066 | None:intergenic | 45.0% | |
| GAACTGGATTTCTCTAGTGG+TGG | + | chr1.3:7819191-7819210 | MS.gene051502:intron | 45.0% | |
| GAGAGATTTAGGGATGGATG+AGG | + | chr1.3:7821258-7821277 | MS.gene051502:CDS | 45.0% | |
| GAGGATGACCTACTATGGAA+CGG | + | chr1.3:7818872-7818891 | MS.gene051502:CDS | 45.0% | |
| GATCACAAGAATCTGACCTG+TGG | - | chr1.3:7821383-7821402 | None:intergenic | 45.0% | |
| GCTATGGCAGTAGAGCATAT+AGG | - | chr1.3:7822513-7822532 | None:intergenic | 45.0% | |
| GGAATTTGATTGAACGGCCA+AGG | - | chr1.3:7818813-7818832 | None:intergenic | 45.0% | |
| GGCAATATTTCAGCACGGTT+CGG | + | chr1.3:7819350-7819369 | MS.gene051502:intron | 45.0% | |
| GGTCAGATTCTTGTGATCTG+TGG | + | chr1.3:7821385-7821404 | MS.gene051502:CDS | 45.0% | |
| GTTAAAAGTGGGGGCTAACT+TGG | + | chr1.3:7818550-7818569 | MS.gene051502:intron | 45.0% | |
| GTTGCAATGTGCTTCCACAT+TGG | + | chr1.3:7819445-7819464 | MS.gene051502:intron | 45.0% | |
| GTTTGTCAAGAGTCCCACAT+TGG | + | chr1.3:7819672-7819691 | MS.gene051502:intron | 45.0% | |
| TAGCGAAAATTGTTGCGGAC+TGG | + | chr1.3:7822772-7822791 | MS.gene051502:CDS | 45.0% | |
| TAGTAGGTCATCCTCCACAA+CGG | - | chr1.3:7818867-7818886 | None:intergenic | 45.0% | |
| TATAAAGCCTGTTCGGCCAA+AGG | + | chr1.3:7820341-7820360 | MS.gene051502:CDS | 45.0% | |
| TGACTGATGAACTAGACGTG+GGG | - | chr1.3:7818898-7818917 | None:intergenic | 45.0% | |
| TGGCCCAATAGACCTTGAAT+AGG | - | chr1.3:7819589-7819608 | None:intergenic | 45.0% | |
| TGGTATCTGCTTTGGCTGAT+TGG | + | chr1.3:7821137-7821156 | MS.gene051502:intron | 45.0% | |
| TGTTGCCAAAAGGGCAATGA+AGG | + | chr1.3:7820263-7820282 | MS.gene051502:CDS | 45.0% | |
| TTACTAGCTCGTGCATGTCA+TGG | - | chr1.3:7822881-7822900 | None:intergenic | 45.0% | |
| TTCATGACAAGGTCGAGGAA+TGG | - | chr1.3:7822288-7822307 | None:intergenic | 45.0% | |
| TTGTGGAGGATGACCTACTA+TGG | + | chr1.3:7818867-7818886 | MS.gene051502:CDS | 45.0% | |
| ! | ACGTTCCTCTTCGCATTTTG+AGG | + | chr1.3:7820039-7820058 | MS.gene051502:CDS | 45.0% |
| ! | TGGCCGAACAGGCTTTATAA+AGG | - | chr1.3:7820340-7820359 | None:intergenic | 45.0% |
| !! | AGTTTTGTAGGATGGACCGA+TGG | + | chr1.3:7819526-7819545 | MS.gene051502:intron | 45.0% |
| !!! | CTCTTCGCATTTTGAGGTCA+AGG | + | chr1.3:7820045-7820064 | MS.gene051502:CDS | 45.0% |
| !!! | CTTCGCATTTTGAGGTCAAG+GGG | + | chr1.3:7820047-7820066 | MS.gene051502:CDS | 45.0% |
| !!! | GCCTTACGAGCTAGTTTTGT+AGG | + | chr1.3:7819514-7819533 | MS.gene051502:intron | 45.0% |
| AAGTCTGATCTCTCCCTAGG+TGG | - | chr1.3:7820735-7820754 | None:intergenic | 50.0% | |
| AATAGGCAGGCCTCGAATCA+TGG | - | chr1.3:7822217-7822236 | None:intergenic | 50.0% | |
| AGAGGAACGTGTTGCATCAG+TGG | - | chr1.3:7820029-7820048 | None:intergenic | 50.0% | |
| AGTCTGATCTCTCCCTAGGT+GGG | - | chr1.3:7820734-7820753 | None:intergenic | 50.0% | |
| ATTGCAGAGGCCATGATTCG+AGG | + | chr1.3:7822204-7822223 | MS.gene051502:CDS | 50.0% | |
| CAGTGTGTGGTGTCTATGTC+AGG | - | chr1.3:7818231-7818250 | None:intergenic | 50.0% | |
| CCCCCCATCAATAATACAGC+AGG | - | chr1.3:7821289-7821308 | None:intergenic | 50.0% | |
| GCTATCATGTCTCCCACTAC+TGG | + | chr1.3:7819612-7819631 | MS.gene051502:intron | 50.0% | |
| GCTGTATTATTGATGGGGGG+AGG | + | chr1.3:7821289-7821308 | MS.gene051502:CDS | 50.0% | |
| GGGCCTAATCTCATCCAATG+TGG | - | chr1.3:7819462-7819481 | None:intergenic | 50.0% | |
| GTCCCATTGAAGCTACTGCT+CGG | + | chr1.3:7821323-7821342 | MS.gene051502:CDS | 50.0% | |
| TATGGTCTGAGCACACACCT+TGG | + | chr1.3:7818793-7818812 | MS.gene051502:CDS | 50.0% | |
| TCCCATTGAAGCTACTGCTC+GGG | + | chr1.3:7821324-7821343 | MS.gene051502:CDS | 50.0% | |
| TGAAACATGGACCGTTGTGG+AGG | + | chr1.3:7818853-7818872 | MS.gene051502:CDS | 50.0% | |
| TGAGAACCACATTACCTGCC+CGG | - | chr1.3:7822259-7822278 | None:intergenic | 50.0% | |
| TGAGCACATGCCATCCAACA+TGG | + | chr1.3:7820111-7820130 | MS.gene051502:CDS | 50.0% | |
| TGAGTTTGGCCTCACTCCAT+CGG | - | chr1.3:7819545-7819564 | None:intergenic | 50.0% | |
| TGCCCGCTTCCTGAAATCAA+AGG | - | chr1.3:7822695-7822714 | None:intergenic | 50.0% | |
| TGGTGAAACATGGACCGTTG+TGG | + | chr1.3:7818850-7818869 | MS.gene051502:CDS | 50.0% | |
| TTATTGATGGGGGGAGGTGA+AGG | + | chr1.3:7821295-7821314 | MS.gene051502:CDS | 50.0% | |
| ! | GTAGTGGGAGACATGATAGC+TGG | - | chr1.3:7819612-7819631 | None:intergenic | 50.0% |
| ! | TCCAGCCTTCATTGCCCTTT+TGG | - | chr1.3:7820271-7820290 | None:intergenic | 50.0% |
| ! | TGGAAGCACATTGCAACTGC+AGG | - | chr1.3:7819442-7819461 | None:intergenic | 50.0% |
| !! | AAAACCGGCTTGCAAGGTGA+GGG | - | chr1.3:7819739-7819758 | None:intergenic | 50.0% |
| !! | CCTTACAAAACCGGCTTGCA+AGG | - | chr1.3:7819745-7819764 | None:intergenic | 50.0% |
| !! | CCTTGCAAGCCGGTTTTGTA+AGG | + | chr1.3:7819742-7819761 | MS.gene051502:intron | 50.0% |
| AATCTGAGCTGGTCCCACCT+AGG | + | chr1.3:7820718-7820737 | MS.gene051502:intron | 55.0% | |
| AATGGAGCATGGCCCAGTAG+TGG | - | chr1.3:7819628-7819647 | None:intergenic | 55.0% | |
| ACATTGCCGGGCAGGTAATG+TGG | + | chr1.3:7822250-7822269 | MS.gene051502:intron | 55.0% | |
| AGACACCACACACTGACACG+TGG | + | chr1.3:7818236-7818255 | MS.gene051502:intron | 55.0% | |
| ATCTGAGCTGGTCCCACCTA+GGG | + | chr1.3:7820719-7820738 | MS.gene051502:intron | 55.0% | |
| ATGGAGCATGGCCCAGTAGT+GGG | - | chr1.3:7819627-7819646 | None:intergenic | 55.0% | |
| ATGGCCTCTGCAATTGTCCC+TGG | - | chr1.3:7822198-7822217 | None:intergenic | 55.0% | |
| GCCAAAAGGGCAATGAAGGC+TGG | + | chr1.3:7820267-7820286 | MS.gene051502:CDS | 55.0% | |
| GCCCGAGCAGTAGCTTCAAT+GGG | - | chr1.3:7821328-7821347 | None:intergenic | 55.0% | |
| GTGGGAGACATGATAGCTGG+TGG | - | chr1.3:7819609-7819628 | None:intergenic | 55.0% | |
| TAGGATGGACCGATGGAGTG+AGG | + | chr1.3:7819533-7819552 | MS.gene051502:intron | 55.0% | |
| TGCCCGAGCAGTAGCTTCAA+TGG | - | chr1.3:7821329-7821348 | None:intergenic | 55.0% | |
| TGGCATACCTTTGGCCGAAC+AGG | - | chr1.3:7820351-7820370 | None:intergenic | 55.0% | |
| TGGCCTCTGCAATTGTCCCT+GGG | - | chr1.3:7822197-7822216 | None:intergenic | 55.0% | |
| !! | CAAAACCGGCTTGCAAGGTG+AGG | - | chr1.3:7819740-7819759 | None:intergenic | 55.0% |
| !! | TGCTTTTGTAGGCTGGCCCA+GGG | + | chr1.3:7822178-7822197 | MS.gene051502:intron | 55.0% |
| !! | TTGCTTTTGTAGGCTGGCCC+AGG | + | chr1.3:7822177-7822196 | MS.gene051502:intron | 55.0% |
| AATGACGAGGGGGTTCCCAC+AGG | + | chr1.3:7821364-7821383 | MS.gene051502:CDS | 60.0% | |
| ACGTGGGGCCGTTCCATAGT+AGG | - | chr1.3:7818883-7818902 | None:intergenic | 60.0% | |
| CACTGACACGTGGCAGACAC+TGG | + | chr1.3:7818246-7818265 | MS.gene051502:intron | 60.0% | |
| GAAGCTACTGCTCGGGCACT+TGG | + | chr1.3:7821331-7821350 | MS.gene051502:CDS | 60.0% | |
| GTCTGCCACGTGTCAGTGTG+TGG | - | chr1.3:7818244-7818263 | None:intergenic | 60.0% | |
| TGGCCCAGGGACAATTGCAG+AGG | + | chr1.3:7822191-7822210 | MS.gene051502:CDS | 60.0% | |
| ! | ATGGGGGGAGGTGAAGGCAT+GGG | + | chr1.3:7821301-7821320 | MS.gene051502:CDS | 60.0% |
| GATGGGGGGAGGTGAAGGCA+TGG | + | chr1.3:7821300-7821319 | MS.gene051502:CDS | 65.0% | |
| GCGTCCCTCACCTTGCAAGC+CGG | + | chr1.3:7819732-7819751 | MS.gene051502:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 7817972 | 7822941 | 7817972 | ID=MS.gene051502 |
| chr1.3 | mRNA | 7817972 | 7822941 | 7817972 | ID=MS.gene051502.t1;Parent=MS.gene051502 |
| chr1.3 | exon | 7817972 | 7818055 | 7817972 | ID=MS.gene051502.t1.exon1;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7817972 | 7818055 | 7817972 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7818777 | 7818949 | 7818777 | ID=MS.gene051502.t1.exon2;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7818777 | 7818949 | 7818777 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7819971 | 7820132 | 7819971 | ID=MS.gene051502.t1.exon3;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7819971 | 7820132 | 7819971 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7820221 | 7820362 | 7820221 | ID=MS.gene051502.t1.exon4;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7820221 | 7820362 | 7820221 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7821247 | 7821465 | 7821247 | ID=MS.gene051502.t1.exon5;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7821247 | 7821465 | 7821247 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7822045 | 7822107 | 7822045 | ID=MS.gene051502.t1.exon6;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7822045 | 7822107 | 7822045 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7822189 | 7822263 | 7822189 | ID=MS.gene051502.t1.exon7;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7822189 | 7822263 | 7822189 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| chr1.3 | exon | 7822705 | 7822941 | 7822705 | ID=MS.gene051502.t1.exon8;Parent=MS.gene051502.t1 |
| chr1.3 | CDS | 7822705 | 7822941 | 7822705 | ID=cds.MS.gene051502.t1;Parent=MS.gene051502.t1 |
| Gene Sequence |
| Protein sequence |
