AlfalfaGEDB | MS.gene015494

M. sativa cultivar XinJiangDaYe / MS.gene015494

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015494.t1	XP_003611204.2	96.6	890	30	0	1	890	3	892	2.40E-251	878.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015494.t1	C0LGE4	75.7	884	205	5	6	886	3	879	7.0e-151	536.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015494.t1	G7KEV5	96.6	890	30	0	1	890	3	892	1.7e-251	878.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene00391	MS.gene015494	PPI
MS.gene015494	MS.gene42512	PPI
MS.gene015494	MS.gene014126	PPI
MS.gene017904	MS.gene015494	PPI
MS.gene041357	MS.gene015494	PPI
MS.gene073439	MS.gene015494	PPI
MS.gene36589	MS.gene015494	PPI
MS.gene58665	MS.gene015494	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015494.t1	MTR_5g011410	97.753	890	20	0	1	890	3	892	0.0	1767
MS.gene015494.t1	MTR_3g093930	34.738	973	511	18	23	890	31	984	2.29e-171	523
MS.gene015494.t1	MTR_7g073290	34.572	969	535	22	1	890	1	949	3.11e-160	493
MS.gene015494.t1	MTR_7g022160	36.074	973	502	23	16	884	50	1006	1.09e-150	470
MS.gene015494.t1	MTR_4g028090	34.441	903	519	19	13	890	7	861	1.90e-142	444
MS.gene015494.t1	MTR_1g102500	31.485	956	531	16	10	883	19	932	3.31e-130	416
MS.gene015494.t1	MTR_1g047670	32.258	868	495	15	75	880	250	1086	6.35e-123	399
MS.gene015494.t1	MTR_1g047670	34.000	450	264	6	32	475	35	457	4.07e-53	201
MS.gene015494.t1	MTR_1g047670	33.933	389	256	1	87	475	214	601	1.88e-46	181
MS.gene015494.t1	MTR_1g047670	39.326	89	54	0	388	476	82	170	9.74e-11	66.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene015494.t1	AT1G12460	64.593	884	303	6	6	886	3	879	0.0	1139
MS.gene015494.t1	AT1G62950	64.149	887	301	8	13	889	11	890	0.0	1099
MS.gene015494.t1	AT1G12460	66.719	640	206	5	250	886	105	740	0.0	835
MS.gene015494.t1	AT1G12460	35.467	375	194	8	6	379	3	330	2.40e-56	208
MS.gene015494.t1	AT3G56370	36.214	972	504	24	9	884	1	952	3.26e-160	494
MS.gene015494.t1	AT3G28040	35.107	977	493	21	36	883	40	1004	1.60e-155	483
MS.gene015494.t1	AT5G01890	34.053	972	518	22	17	884	8	960	1.14e-148	464
MS.gene015494.t1	AT5G07180	31.904	956	520	21	13	883	11	920	3.52e-138	436
MS.gene015494.t1	AT5G62230	32.390	883	524	17	32	883	29	869	2.57e-134	424
MS.gene015494.t1	AT5G62230	31.364	931	518	19	32	883	29	917	1.49e-129	413

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Find 216 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCTTTCTCAGTAGC+TGG	0.489093	5.4:+5917111	None:intergenic
AAACCTCATCGGCAAAATTC+CGG	0.377479	5.4:-5916080	MS.gene015494:CDS
AAAGGAGCACCGCAGAGAAA+AGG	0.484898	5.4:+5915623	None:intergenic
AAATATGAAGATTGGGAGGC+AGG	0.463881	5.4:-5915329	MS.gene015494:CDS
AAATCTAGAAAACGAATATT+AGG	0.330922	5.4:+5916763	None:intergenic
AAATGTTATAATTGGAAAGT+TGG	0.382735	5.4:-5915378	MS.gene015494:CDS
AAATTAGGTAATAACTCGAT+AGG	0.584585	5.4:-5916166	MS.gene015494:CDS
AAGCATGGCTGAGATTGTTC+AGG	0.520205	5.4:-5914484	MS.gene015494:CDS
AAGGAGTCGTTGATAGGAGG+CGG	0.574070	5.4:-5915287	MS.gene015494:CDS
AAGGGATGCTTCCCTTGAGC+TGG	0.451610	5.4:+5915837	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTGTGATGTTTACAGTTT+CGG	-	chr5.4:5916918-5916937	MS.gene015494:CDS	30.0%
AATCCAAATGCATTAGACTA+TGG	+	chr5.4:5915171-5915190	None:intergenic	30.0%
AGACCGAAATTATCCAAAAT+AGG	+	chr5.4:5916831-5916850	None:intergenic	30.0%
AGAGTATGTTAGAGGATTTA+AGG	+	chr5.4:5916755-5916774	None:intergenic	30.0%
ATCAAAATATGAAGATTGGG+AGG	-	chr5.4:5916308-5916327	MS.gene015494:CDS	30.0%
CTTTCTCATAACAATCTTGT+TGG	-	chr5.4:5914974-5914993	MS.gene015494:CDS	30.0%
GAGGAATTCGAAAATGAAAT+TGG	-	chr5.4:5916468-5916487	MS.gene015494:CDS	30.0%
GCAATTCTTGAATATCAACT+GGG	+	chr5.4:5915438-5915457	None:intergenic	30.0%
TATCAAAGAATGGCTTCAAT+GGG	-	chr5.4:5914900-5914919	MS.gene015494:CDS	30.0%
TATGTGATAGATCTAGGAAT+TGG	+	chr5.4:5915855-5915874	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	5914446	5917217	5914446	ID=MS.gene015494
chr5.4	mRNA	5914446	5917217	5914446	ID=MS.gene015494.t1;Parent=MS.gene015494
chr5.4	exon	5916046	5917217	5916046	ID=MS.gene015494.t1.exon1;Parent=MS.gene015494.t1
chr5.4	CDS	5916046	5917217	5916046	ID=cds.MS.gene015494.t1;Parent=MS.gene015494.t1
chr5.4	exon	5914446	5915946	5914446	ID=MS.gene015494.t1.exon2;Parent=MS.gene015494.t1
chr5.4	CDS	5914446	5915946	5914446	ID=cds.MS.gene015494.t1;Parent=MS.gene015494.t1

Gene Sequence

>MS.gene015494

ATGAGAACACAGTGTCAAATTCATCTTTTTCATGCTCTATTCTGCTTCATTCTCTGTTTGTTTTGGTCTATTGCAACGGTTTCACCAGCTACTGAGAAAGAGATTTTACTTCAGTTCAAAGGTAACATCACTGAGGATCCACACAATACCTTGAGTTCATGGGTTTCTGGTGGAGACCCATGTCAAGGTTACACAGGTGTTTTCTGTAACATAGAAGGATTTGTAGAAAGAATTGTGCTTTGGAACACTAGCTTAGGTGGGGTGTTGTCACCAGCACTCTCAGGGTTGAAGAGGTTGAGGATATTGACATTGTTTGGGAATCGATTTTCGGGTAATATTCCAGATGATTATGCTGATCTTCACTCATTGTGGAAGATCAATTTCAGCTCCAATGCGTTATCCGGTTCGATCCCGGATTTCATTGGTGATTTGCCTAATATTCGTTTTCTAGATTTATCAAAGAATGGCTTCAATGGGGAGATACCTTCAGCTTTGTTTAGGTACTGCTATAAAACTAAGTTTGTTTCTCTTTCTCATAACAATCTTGTTGGTTCAATTCCTGTGTCTTTGGTGAATTGCTCTAACCTTGAAGGTTTTGATTTTTCTTTCAATAATCTTAGTGGTGTTGTCCCTTCTAGACTATGTGACATTCCTATGTTATCTTATGTATCACTGAGAAGCAATGCCTTATCAGGTAGTGTGGAAGAGCACGTTTCTGGATGCCATAGTCTAATGCATTTGGATTTTGGTAGTAATAGATTTACTGATTTGGCTCCATTCAGCATCCTAGGACTGCAAAATCTTACATATTTCAATATATCCTATAATGGGTTTGAAGGACAAATTCCTGATATCACTGCATGTAGTGAGAGATTAGTGGTCTTTGATGCTTCAGGGAATAATTTGGATGGGGCTATTCCCTCTAGCATAACTAGATGCAAGAACTTAAAGCTCTTGTCCTTGGAGTTGAATAAGCTGAAAGGGAGTATCCCAGTTGATATTCAAGAATTGCGAGGACTATTGGTTATCAAATTAGGTAATAACTCGATAGGCGGAATGATTCCTGAGGGGTTTGGCAACATTGAACTGCTTGAATTGCTGGATTTGAACAACCTAAACCTCATCGGCAAAATTCCGGCTGACATAACAAATTGCAAGTTTCTTCTTGAGCTGTGAGTTCTGCTGTAACTTTCTCAAACTGTTGTTTATTATCTTGATCGAACCTCTGTAATGTGAATCAAATATCTGTTCATTCTTTCGTGTTGCTGCAGGGATGTCTCCGGTAATAACTTAGACGGTGAGATTCCTCAGTCTGTTTACAAAATGACAAATCTTGAAGCCCTTGACATGCATCATAACCAGCTCAAGGGAAGCATCCCTTCAAGCCTAGGAAACCTATCAAGGATCCAATTCCTAGATCTATCACATAATTCATTTTCTGGTTCAATCCCTCCTTCACTTGGAGATTTAAATAACTTGACACATTTTGATCTCTCATTCAACAATCTCTCTGGTGTCATTCCTGATATTGCAACAATACAGCATTTTGGTGCACCTGCATTTTTCAATAATCCTTTTCTCTGCGGTGCTCCTTTAGACATCACTTGCTCTGCAAACGGAACAAGATCGCCATCTTCACCTCCTGGGAAGACTAAACTTCTCAGTGTGTCTGCTATTGTTGCCATTGTTGCTGCAGCTGTGATTCTAACTGGGGTTTGTTTGGTGACCATCATGAGTATTAGGGCCCGACGTAGAAAAAAAGACGATGATCAAATTATGATTGTTGAGAGTACACCTCTAGGATCAACAGAATCATCAAATGTTATAATTGGAAAGTTGGTTCTCTTCAGCAAAAGTTTACCATCAAAATATGAAGATTGGGAGGCAGGCACCAAAGCATTGCTTGACAAGGAGTCGTTGATAGGAGGCGGATCGATTGGTACAGTCTACAAAACCGATTTTGAAGGTGACGTCTCAATCGCAGTGAAGAAGCTTGAGACTTTGGGAAGGATCAGAAATCAAGAGGAATTCGAAAATGAAATTGGGCGACTAGGAAACCTTCAACACTGTAATTTAGTTGCATTTCAAGGTTACTACTGGTCCTCTTCAATGCAGTTGATTTTGTCAGAGTTTGTTTCAAATGGAAATCTCTATGATAATCTACATGGGCTTGGATATCCTGGAACCAGCACAAGTAGAGGCAATAGGGAATTATATTGGTCTAGAAGGTTCCAAATTGCACTTGGAACTGCAAGAGCCCTTGCCTATCTCCACCATGACTGTCGCCCTCCGATCCTTCACCTCAACCTTAAATCCTCTAACATACTCTTAGATGAAAAATATGAAGCCAAGTTATCTGATTATGGATTAGGAAAGTTGCTACCTATTTTGGATAATTTCGGTCTCACCAAGTTCCACAATGCTGTTGGATATGTTGCACCAGAGTTGGCTCAAAGCTTTAGGCAGAGTGAGAAGTGTGATGTTTACAGTTTCGGCGTCATTCTTTTGGAGCTAGTTACAGGGAGGAAGCCTGTGGAAAGTGTAACCACACATGAGGTTGTTGTTTTGTGTGAATATGTAAGAAGTTTGTTGGAAACTGGCTCAGCTTCAAACTGCTTTGACAGGAATTTACAAGGATTTGTTGAGAATGAATTGATTCAGGTTATGAAATTAGGGCTAATTTGTACTTCAGAGGATCCTTTAAGAAGACCAAGCATGGCTGAGATTGTTCAGGTCCTTGAGTCCATCAGAGATGGATCGGAATCTCATTAA

Protein sequence

>MS.gene015494.t1

MRTQCQIHLFHALFCFILCLFWSIATVSPATEKEILLQFKGNITEDPHNTLSSWVSGGDPCQGYTGVFCNIEGFVERIVLWNTSLGGVLSPALSGLKRLRILTLFGNRFSGNIPDDYADLHSLWKINFSSNALSGSIPDFIGDLPNIRFLDLSKNGFNGEIPSALFRYCYKTKFVSLSHNNLVGSIPVSLVNCSNLEGFDFSFNNLSGVVPSRLCDIPMLSYVSLRSNALSGSVEEHVSGCHSLMHLDFGSNRFTDLAPFSILGLQNLTYFNISYNGFEGQIPDITACSERLVVFDASGNNLDGAIPSSITRCKNLKLLSLELNKLKGSIPVDIQELRGLLVIKLGNNSIGGMIPEGFGNIELLELLDLNNLNLIGKIPADITNCKFLLELDVSGNNLDGEIPQSVYKMTNLEALDMHHNQLKGSIPSSLGNLSRIQFLDLSHNSFSGSIPPSLGDLNNLTHFDLSFNNLSGVIPDIATIQHFGAPAFFNNPFLCGAPLDITCSANGTRSPSSPPGKTKLLSVSAIVAIVAAAVILTGVCLVTIMSIRARRRKKDDDQIMIVESTPLGSTESSNVIIGKLVLFSKSLPSKYEDWEAGTKALLDKESLIGGGSIGTVYKTDFEGDVSIAVKKLETLGRIRNQEEFENEIGRLGNLQHCNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLGYPGTSTSRGNRELYWSRRFQIALGTARALAYLHHDCRPPILHLNLKSSNILLDEKYEAKLSDYGLGKLLPILDNFGLTKFHNAVGYVAPELAQSFRQSEKCDVYSFGVILLELVTGRKPVESVTTHEVVVLCEYVRSLLETGSASNCFDRNLQGFVENELIQVMKLGLICTSEDPLRRPSMAEIVQVLESIRDGSESH