AlfalfaGEDB | MS.gene041357

M. sativa cultivar XinJiangDaYe / MS.gene041357

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF01535.23 PF13041.9 PF14432.9 PF20430.1 PF20431.1

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041357.t1	RHN73286.1	95.9	812	33	0	1	812	80	891	0.00E+00	1550.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041357.t1	Q7Y211	62.9	815	287	5	1	812	88	890	7.0e-307	1054.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041357.t1	A0A396J5A6	95.9	812	33	0	1	812	80	891	0.0e+00	1550.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene000711	MS.gene041357	PPI
MS.gene003001	MS.gene041357	PPI
MS.gene007454	MS.gene041357	PPI
MS.gene017904	MS.gene041357	PPI
MS.gene023588	MS.gene041357	PPI
MS.gene041357	MS.gene42512	PPI
MS.gene041357	MS.gene63841	PPI
MS.gene041357	MS.gene006219	PPI
MS.gene041357	MS.gene066267	PPI
MS.gene041357	MS.gene020514	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041357.t1	MTR_2g035620	96.552	812	28	0	1	812	76	887	0.0	1649
MS.gene041357.t1	MTR_2g035620	32.731	443	261	12	180	616	52	463	3.15e-52	196
MS.gene041357.t1	MTR_2g058990	39.951	811	452	10	8	812	194	975	0.0	610
MS.gene041357.t1	MTR_2g058990	28.363	617	399	14	16	622	99	682	1.29e-65	236
MS.gene041357.t1	MTR_2g058990	32.114	492	296	13	5	486	294	757	5.21e-59	217
MS.gene041357.t1	MTR_2g058990	31.064	235	154	4	1	231	493	723	5.65e-29	124
MS.gene041357.t1	MTR_2g058990	27.749	191	130	4	1	186	594	781	2.17e-13	74.7
MS.gene041357.t1	MTR_7g037430	37.500	816	483	8	15	812	146	952	0.0	606
MS.gene041357.t1	MTR_7g037430	31.004	687	401	15	5	650	35	689	2.28e-96	322
MS.gene041357.t1	MTR_7g037430	28.803	618	364	12	1	575	233	817	3.05e-67	241

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene041357.t1	AT3G57430	65.031	815	270	5	1	812	88	890	0.0	1113
MS.gene041357.t1	AT3G57430	28.774	424	273	7	180	599	65	463	1.01e-41	164
MS.gene041357.t1	AT1G11290	39.334	811	456	12	6	812	31	809	0.0	604
MS.gene041357.t1	AT1G11290	33.252	412	246	8	1	399	227	622	8.29e-55	203
MS.gene041357.t1	AT4G18750	37.297	799	474	7	15	812	99	871	0.0	566
MS.gene041357.t1	AT4G18750	29.061	554	361	8	1	550	186	711	1.05e-68	244
MS.gene041357.t1	AT4G18750	27.015	459	298	10	166	618	45	472	5.81e-42	165
MS.gene041357.t1	AT1G18485	36.965	817	482	8	3	812	180	970	0.0	561
MS.gene041357.t1	AT1G18485	26.156	627	411	16	12	622	86	676	1.40e-62	228
MS.gene041357.t1	AT1G18485	26.599	297	200	6	1	287	487	775	8.00e-25	111

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Find 196 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCTTGGACAAAGAA+GGG	0.544852	2.1:+55387821	MS.gene041357:CDS
AAATGGAACTTGCTCTTGTG+GGG	0.606154	2.1:+55389241	MS.gene041357:CDS
AACTCCCTCGTTAACATGTA+CGG	0.561233	2.1:+55386980	MS.gene041357:CDS
AAGGTCTTGGATGCCGGCAG+TGG	0.502517	2.1:-55386891	None:intergenic
AAGTTCCATTTCTGAAATGA+TGG	0.484215	2.1:-55389229	None:intergenic
AATCTCTATCCTCCCCATTC+TGG	0.417842	2.1:-55387917	None:intergenic
AATGGACATGTATTCCAGAA+TGG	0.487787	2.1:+55387903	MS.gene041357:CDS
AATGTTCTTATCATGGCTTA+TGG	0.304854	2.1:+55388345	MS.gene041357:CDS
AATTGTAAGCAACCTGAAAA+AGG	0.362097	2.1:+55387613	MS.gene041357:CDS
ACATAATGGCTAGCCACATT+TGG	0.436095	2.1:-55388753	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACATTCTTGGACAAAGAA+GGG	+	chr2.1:55387821-55387840	MS.gene041357:CDS	30.0%
AATGTTCTTATCATGGCTTA+TGG	+	chr2.1:55388345-55388364	MS.gene041357:CDS	30.0%
AATTGTAAGCAACCTGAAAA+AGG	+	chr2.1:55387613-55387632	MS.gene041357:CDS	30.0%
AGAAAGAAACTATGCTTTGT+GGG	+	chr2.1:55389042-55389061	MS.gene041357:CDS	30.0%
AGATTCCATCATTTCAGAAA+TGG	+	chr2.1:55389224-55389243	MS.gene041357:CDS	30.0%
ATATGAAGAAAGTAGATGCA+TGG	+	chr2.1:55388649-55388668	MS.gene041357:CDS	30.0%
ATATGAATTTAGTGGCAACA+TGG	-	chr2.1:55389163-55389182	None:intergenic	30.0%
ATCCACCAGAATTTAGAAAT+TGG	+	chr2.1:55388696-55388715	MS.gene041357:CDS	30.0%
ATGTTCTCATTTAGAGATGT+TGG	+	chr2.1:55387498-55387517	MS.gene041357:CDS	30.0%
ATGTTCTTATCATGGCTTAT+GGG	+	chr2.1:55388346-55388365	MS.gene041357:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.1	gene	55386836	55389274	55386836	ID=MS.gene041357
chr2.1	mRNA	55386836	55389274	55386836	ID=MS.gene041357.t1;Parent=MS.gene041357
chr2.1	exon	55386836	55389274	55386836	ID=MS.gene041357.t1.exon1;Parent=MS.gene041357.t1
chr2.1	CDS	55386836	55389274	55386836	ID=cds.MS.gene041357.t1;Parent=MS.gene041357.t1

Gene Sequence

>MS.gene041357

ATGGTCACGGCTGGCATACCCCCAGACAACTTCGCCTTCCCCGCCGTCCTCAAAGCCACTGCCGGCATCCAAGACCTTAATCTCGGCAAACAGCTCCATGCCCATGTCTTCAAATTCGGACAAGTTCTCCCAACTGCTGTCCCTAACTCCCTCGTTAACATGTACGGTAAATGCGGCGATATCGACTCTGCACGCCGTGTGTTCGATGAAATAACCAACCGAGACGATGTCTCATGGAACTCCATGATCAATGCAGCGTGCCGGTTTAAGGAATGGGAGCTGGCAGTTCACCTTTTCCGGTTAATGTTGTTGGAGAATGTGGGACCTACTTCGTTTACATTGGTTAGTGTAGCTCATGCTTGTTCAAATCTAAGTAATGGGTTGTTACTTGGGAAGCAAGTTCATGCTTTTGTATTGAGGAATGGTGATTGGAGAACTTTTACTAACAATGCTTTGGTTACAATGTATGCTAAGTTAGATAGAGTTTATGAAGCTAAAACTTTGTTTGATGTGTTTGATGACAAAGATTTGGTGTCTTGGAACACTATTATTAGTTCACTTTCTCAAAATGATAGATTTGAGGAAGCTTTGTTGTATTTACATGCTATGCTTCAAAGTGGTGTTAGGCCTGATGGAGTTACCTTAGCTAGTGTTTTGCCTGCATGTTCTCATTTAGAGATGTTGGGCTGTGGAAAACAGATACATGCTTTTGTATTGAGGAACAATGATTTGATTGAAAATTCTTTTGTCGGTAGTGCTTTGGTTGACATGTATTGTAATTGTAAGCAACCTGAAAAAGGTAGGTTGGTTTTTGATGGGATGTTTAGGAGGACGGTTGCGGTTTGGAATGCTATGATTGCTGGTTATGTGCGCAATGAGTTTGATTATGAGGCCATTGAGCTTTTTATTGAGATGGTTTTTGAGTTGGGTTTGAGTCCGAATTCCGTGACTTTATCGAGTGTTTTGCCTGCTTGTGTACGGTGCGAAACATTCTTGGACAAAGAAGGGATTCATGGTTGTGTAGTGAAATGGGGTTTTGAGAAGGATAAGTATGTGCAAAATGCATTAATGGACATGTATTCCAGAATGGGGAGGATAGAGATTGCAAGGAGTATATTTGGAAGCATGAATAGGAAAGATATTGTTTCTTGGAACACGATGATTACTGGTTATGTTGTTTGTGATCGCCACGATGATGCACTTAACCTTCTGCATGACATGCAGAGAGGTCAAGCAGAACATAGGATTAACACATTTGATGATTACGAGGATAACGAAAACCTTCCCCTTAAGCCGAATTCTGTGACTCTAATGACTGTGCTTCCTGGCTGTGCCGCTTTGGCAGCACTTGGGAAAGGTAAAGAAATTCATGCTTATGCCGTTAAACAAATGCTATCAAAGGATGTTGCTGTTGGAAGTGCACTGGTTGACATGTATGCAAAATGTGGTTGCTTGAACTTATCTAGGACAGTATTTGAGCAAATGTCTGTAAGAAATGTTATTACTTGGAATGTTCTTATCATGGCTTATGGGATGCATGGGAAAGGGGAAGAGGCTTTGAAGCTTTTTAGAAGAATGGTGGAAGAAGGAGACAGCAACAGGGAAATAAGGCCTAATGAAGTGACCTATATTGCTATTTTTGCTTCTCTTAGTCACTCTGGTATGGTGGATGAAGGCCTTAATTTATTCCATACAATGAAAGCTAAACATGGGATTGAACCTACATCCGACCATTATGCTTGTCTTGTGGACTTGCTTGGCCGGTCAGGCCGGATCGAAGAGGCCTATAATCTTATCAAGACAATACCATCCAATATGAAGAAAGTAGATGCATGGAGCAGCTTGCTTGGTGCCTGCAAGATCCACCAGAATTTAGAAATTGGTGAAATTGCTGCAAAGAACCTATTTGTCTTGGAGCCAAATGTGGCTAGCCATTATGTTCTACTGTCTAACATTTACTCTTCAGCTGGACTATGGGACCAAGCAATCGATGTTAGAAAGAAAATGAAGGAAATGGGAGTAAGAAAAGAACCTGGATGTAGTTGGATTGAGCATGGTGATGAGGTTCATAAGTTTTTGGCAGGGGATGTTTCACATCCACAAAGTAAAGAGCTTCATGAATATCTTGAAACTCTGTCATTAAGAATGAAAAAGGAGGGATATGTACCTGATACTTCTTGTGTACTTCACAATGTTGATGAGGAAGAGAAAGAAACTATGCTTTGTGGGCATAGTGAGAGATTGGCAATAGCTTTTGGCCTTTTAAATACTTCTCCTGGTACTACCATTAGAGTTGCTAAAAACCTTAGAGTTTGTAATGACTGCCATGTTGCCACTAAATTCATATCTAAGATAGTGGATAGGGAAATCATTCTTAGAGATGTTAGAAGATTCCATCATTTCAGAAATGGAACTTGCTCTTGTGGGGACTATTGGTAA

Protein sequence

>MS.gene041357.t1

MVTAGIPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQVLPTAVPNSLVNMYGKCGDIDSARRVFDEITNRDDVSWNSMINAACRFKEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLSNGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLDRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHAMLQSGVRPDGVTLASVLPACSHLEMLGCGKQIHAFVLRNNDLIENSFVGSALVDMYCNCKQPEKGRLVFDGMFRRTVAVWNAMIAGYVRNEFDYEAIELFIEMVFELGLSPNSVTLSSVLPACVRCETFLDKEGIHGCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCDRHDDALNLLHDMQRGQAEHRINTFDDYEDNENLPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDSNREIRPNEVTYIAIFASLSHSGMVDEGLNLFHTMKAKHGIEPTSDHYACLVDLLGRSGRIEEAYNLIKTIPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLEPNVASHYVLLSNIYSSAGLWDQAIDVRKKMKEMGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKELHEYLETLSLRMKKEGYVPDTSCVLHNVDEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW