AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015506

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015506.t1 MTR_5g011250 98.034 356 7 0 1 356 1 356 0.0 717
MS.gene015506.t1 MTR_3g072810 44.706 340 170 6 5 342 3 326 2.86e-95 287
MS.gene015506.t1 MTR_3g072820 41.124 338 187 5 5 342 4 329 3.45e-84 258
MS.gene015506.t1 MTR_5g059130 42.331 326 170 5 27 342 14 331 4.09e-84 258
MS.gene015506.t1 MTR_4g015790 38.416 341 197 4 7 337 13 350 3.16e-83 257
MS.gene015506.t1 MTR_7g068650 36.747 332 206 3 7 337 14 342 3.67e-78 244
MS.gene015506.t1 MTR_5g059140 40.244 328 175 9 5 326 3 315 7.82e-75 234
MS.gene015506.t1 MTR_3g070860 36.747 332 201 5 7 337 14 337 2.70e-73 231
MS.gene015506.t1 MTR_5g082750 37.651 332 198 5 7 337 13 336 2.36e-72 229
MS.gene015506.t1 MTR_3g063180 33.923 339 203 7 7 338 9 333 4.77e-72 228
MS.gene015506.t1 MTR_7g062580 34.897 341 203 7 19 356 31 355 3.26e-69 221
MS.gene015506.t1 MTR_7g062570 33.918 342 209 7 17 356 29 355 5.02e-67 215
MS.gene015506.t1 MTR_7g062550 34.337 332 199 7 19 347 36 351 6.82e-65 210
MS.gene015506.t1 MTR_5g055820 35.294 340 203 7 8 345 13 337 1.41e-64 209
MS.gene015506.t1 MTR_7g062600 34.218 339 203 8 19 353 27 349 4.52e-64 207
MS.gene015506.t1 MTR_5g055900 34.056 323 197 6 8 329 13 320 1.61e-61 201
MS.gene015506.t1 MTR_8g064200 35.692 325 190 7 8 329 18 326 2.46e-61 201
MS.gene015506.t1 MTR_5g055680 34.311 341 204 7 8 345 13 336 3.59e-61 200
MS.gene015506.t1 MTR_8g064200 35.692 325 190 7 8 329 23 331 3.64e-61 200
MS.gene015506.t1 MTR_7g063730 33.138 341 209 7 19 356 40 364 5.47e-60 197
MS.gene015506.t1 MTR_8g074070 35.739 291 171 6 46 331 51 330 5.55e-60 197
MS.gene015506.t1 MTR_5g048550 32.853 347 217 6 2 347 7 338 5.89e-60 197
MS.gene015506.t1 MTR_8g074050 35.889 287 176 5 46 331 51 330 8.16e-60 196
MS.gene015506.t1 MTR_3g117420 35.192 287 178 5 46 331 51 330 1.20e-59 196
MS.gene015506.t1 MTR_0328s0030 34.694 343 208 6 4 345 7 334 1.52e-59 196
MS.gene015506.t1 MTR_4g116010 34.426 305 183 8 26 326 28 319 2.22e-59 195
MS.gene015506.t1 MTR_5g048850 34.056 323 197 6 8 329 13 320 5.09e-58 192
MS.gene015506.t1 MTR_3g091350 34.824 313 193 4 14 326 30 331 5.25e-58 192
MS.gene015506.t1 MTR_7g102820 34.770 348 201 10 19 352 38 373 5.50e-58 192
MS.gene015506.t1 MTR_5g048470 32.865 356 213 8 8 352 18 358 8.67e-58 191
MS.gene015506.t1 MTR_0009s0050 33.531 337 206 7 8 343 13 332 8.26e-57 189
MS.gene015506.t1 MTR_5g048740 33.819 343 212 6 4 345 7 335 9.03e-57 189
MS.gene015506.t1 MTR_0009s0050 33.531 337 206 7 8 343 13 332 1.11e-56 188
MS.gene015506.t1 MTR_5g055690 32.464 345 218 6 4 347 9 339 1.35e-56 188
MS.gene015506.t1 MTR_5g032870 35.017 297 180 5 47 338 38 326 2.27e-56 187
MS.gene015506.t1 MTR_5g055800 32.945 343 213 6 4 345 9 335 2.78e-56 187
MS.gene015506.t1 MTR_2g437380 31.471 340 219 6 8 345 17 344 4.52e-56 187
MS.gene015506.t1 MTR_5g065010 33.918 342 205 9 1 339 1 324 7.06e-56 186
MS.gene015506.t1 MTR_0009s0480 33.639 327 201 6 4 329 8 319 8.03e-56 186
MS.gene015506.t1 MTR_3g117485 31.692 325 214 5 6 329 11 328 1.46e-55 186
MS.gene015506.t1 MTR_7g045650 34.909 275 161 6 19 290 36 295 6.90e-55 183
MS.gene015506.t1 MTR_3g092890 36.218 312 176 10 14 319 8 302 7.08e-55 183
MS.gene015506.t1 MTR_8g074070 35.395 291 153 8 46 331 51 311 9.40e-55 183
MS.gene015506.t1 MTR_5g048570 32.344 337 208 7 8 343 13 330 1.10e-54 183
MS.gene015506.t1 MTR_2g072890 31.667 360 215 9 8 353 17 359 1.34e-54 183
MS.gene015506.t1 MTR_1g062110 32.424 330 214 5 8 334 27 350 1.61e-54 183
MS.gene015506.t1 MTR_3g091360 33.230 322 202 5 7 326 14 324 2.01e-54 182
MS.gene015506.t1 MTR_1g033810 36.076 316 187 7 16 329 20 322 2.69e-54 182
MS.gene015506.t1 MTR_3g026150 31.429 350 218 9 8 352 24 356 3.43e-54 182
MS.gene015506.t1 MTR_8g024120 33.648 318 196 7 13 329 12 315 5.04e-54 181
MS.gene015506.t1 MTR_3g117485 35.039 254 160 4 77 329 7 256 4.21e-53 177
MS.gene015506.t1 MTR_2g072910 33.642 324 199 7 8 329 17 326 8.24e-53 178
MS.gene015506.t1 MTR_5g032880 33.898 295 178 7 47 338 38 318 2.29e-51 181
MS.gene015506.t1 MTR_5g032880 33.019 318 196 6 47 355 376 685 7.27e-51 180
MS.gene015506.t1 MTR_8g075830 34.062 320 191 8 25 342 27 328 1.06e-50 173
MS.gene015506.t1 MTR_8g075890 33.750 320 192 8 25 342 27 328 3.13e-50 172
MS.gene015506.t1 MTR_1g070120 29.970 337 217 9 14 346 10 331 8.81e-50 170
MS.gene015506.t1 MTR_1g070135 29.499 339 216 9 14 346 10 331 1.89e-49 169
MS.gene015506.t1 MTR_3g088565 32.886 298 181 7 47 338 3 287 3.09e-49 167
MS.gene015506.t1 MTR_2g069190 32.938 337 207 9 8 340 33 354 1.01e-47 166
MS.gene015506.t1 MTR_1g070085 31.519 349 216 9 14 352 9 344 4.19e-47 163
MS.gene015506.t1 MTR_1g070085 31.519 349 216 9 14 352 9 344 4.19e-47 163
MS.gene015506.t1 MTR_2g437380 34.646 254 158 4 102 353 11 258 4.52e-47 161
MS.gene015506.t1 MTR_3g096500 30.548 347 219 8 9 346 35 368 4.61e-47 164
MS.gene015506.t1 MTR_3g058610 32.432 333 194 9 19 346 21 327 5.27e-47 163
MS.gene015506.t1 MTR_4g093840 30.063 316 206 6 18 329 34 338 9.97e-47 162
MS.gene015506.t1 MTR_5g022020 31.385 325 202 11 23 342 20 328 1.30e-46 162
MS.gene015506.t1 MTR_8g009160 30.060 336 216 7 8 340 28 347 2.38e-46 162
MS.gene015506.t1 MTR_1g102070 32.174 345 200 10 17 346 36 361 4.57e-46 161
MS.gene015506.t1 MTR_1g034140 33.223 301 172 7 46 331 26 312 5.45e-46 160
MS.gene015506.t1 MTR_8g008930 32.653 294 187 5 47 337 60 345 2.29e-45 159
MS.gene015506.t1 MTR_4g087100 32.595 316 189 8 43 341 22 330 2.64e-45 159
MS.gene015506.t1 MTR_7g081710 29.394 330 219 8 10 338 16 332 4.96e-45 158
MS.gene015506.t1 MTR_7g029655 33.333 336 189 10 8 329 28 342 5.95e-45 158
MS.gene015506.t1 MTR_1g081840 30.233 344 207 8 18 347 32 356 6.16e-45 158
MS.gene015506.t1 MTR_1g034120 29.155 343 209 9 16 338 1 329 7.41e-45 157
MS.gene015506.t1 MTR_3g026150 33.730 252 160 4 102 352 8 253 1.13e-44 154
MS.gene015506.t1 MTR_7g105070 32.317 328 199 9 8 329 24 334 2.30e-44 156
MS.gene015506.t1 MTR_8g028435 32.881 295 186 7 47 338 60 345 5.28e-44 155
MS.gene015506.t1 MTR_5g048850 31.618 272 171 5 8 278 13 270 5.77e-44 153
MS.gene015506.t1 MTR_6g464620 31.884 345 209 9 13 346 37 366 7.11e-44 155
MS.gene015506.t1 MTR_1g034060 28.863 343 210 9 16 338 1 329 1.81e-43 154
MS.gene015506.t1 MTR_4g087110 32.484 314 186 11 43 338 22 327 2.87e-43 153
MS.gene015506.t1 MTR_8g009110 29.464 336 219 8 8 340 28 348 3.31e-43 153
MS.gene015506.t1 MTR_4g087090 32.667 300 173 8 47 329 30 317 4.78e-43 152
MS.gene015506.t1 MTR_3g088745 30.702 342 210 9 17 347 14 339 6.72e-43 152
MS.gene015506.t1 MTR_2g069210 30.240 334 216 7 8 338 29 348 7.19e-43 152
MS.gene015506.t1 MTR_2g068840 32.229 332 195 10 8 329 22 333 9.62e-43 152
MS.gene015506.t1 MTR_2g069090 31.157 337 214 9 8 340 33 355 1.03e-42 152
MS.gene015506.t1 MTR_8g009090 32.313 294 185 7 47 336 60 343 1.36e-42 152
MS.gene015506.t1 MTR_1g032140 31.707 328 198 7 8 329 30 337 1.75e-42 151
MS.gene015506.t1 MTR_4g087120 32.012 328 194 11 43 349 22 341 2.06e-42 151
MS.gene015506.t1 MTR_3g045230 29.630 351 225 10 5 351 15 347 2.74e-42 150
MS.gene015506.t1 MTR_0009s0480 30.909 275 175 5 4 277 8 268 3.06e-42 148
MS.gene015506.t1 MTR_2g025120 30.420 286 185 5 48 332 5 277 3.17e-42 149
MS.gene015506.t1 MTR_5g085330 31.864 295 184 6 48 338 6 287 4.27e-42 149
MS.gene015506.t1 MTR_3g026150 31.636 275 167 8 8 277 24 282 4.36e-42 148
MS.gene015506.t1 MTR_4g117880 31.973 294 189 7 47 337 60 345 5.53e-42 150
MS.gene015506.t1 MTR_8g033380 30.769 351 200 8 16 347 30 356 6.41e-42 150
MS.gene015506.t1 MTR_2g069020 30.499 341 216 11 8 342 31 356 9.04e-42 150
MS.gene015506.t1 MTR_2g069010 27.405 343 227 8 8 342 33 361 1.22e-41 149
MS.gene015506.t1 MTR_1g070080 29.508 305 193 5 14 313 9 296 1.27e-41 149
MS.gene015506.t1 MTR_2g069020 30.499 341 216 11 8 342 31 356 1.55e-41 149
MS.gene015506.t1 MTR_3g043900 30.199 351 222 10 5 351 15 346 1.66e-41 149
MS.gene015506.t1 MTR_2g068950 28.198 344 223 9 8 342 27 355 2.44e-41 149
MS.gene015506.t1 MTR_2g068960 28.779 344 221 9 8 342 27 355 2.59e-41 149
MS.gene015506.t1 MTR_1g093120 29.619 341 216 9 8 340 29 353 3.78e-41 148
MS.gene015506.t1 MTR_3g083370 30.508 295 190 6 46 339 3 283 4.04e-41 146
MS.gene015506.t1 MTR_8g009170 29.706 340 220 8 8 344 28 351 4.19e-41 148
MS.gene015506.t1 MTR_4g087140 30.154 325 199 11 47 353 26 340 4.91e-41 147
MS.gene015506.t1 MTR_1g062110 30.403 273 182 4 8 277 27 294 5.13e-41 146
MS.gene015506.t1 MTR_8g009080 32.566 304 186 9 47 344 94 384 5.86e-41 148
MS.gene015506.t1 MTR_1g093140 27.826 345 224 10 8 340 30 361 6.56e-41 147
MS.gene015506.t1 MTR_7g062560 28.863 343 215 10 8 347 27 343 1.29e-40 146
MS.gene015506.t1 MTR_0009s0050 35.146 239 146 5 106 343 4 234 1.35e-40 144
MS.gene015506.t1 MTR_5g055690 30.182 275 178 5 4 277 9 270 1.47e-40 144
MS.gene015506.t1 MTR_0009s0050 35.146 239 146 5 106 343 4 234 1.53e-40 144
MS.gene015506.t1 MTR_2g102570 32.095 296 184 7 47 338 52 334 1.88e-40 146
MS.gene015506.t1 MTR_1g093110 28.529 340 224 8 8 340 30 357 2.82e-40 146
MS.gene015506.t1 MTR_8g041620 29.394 330 209 9 8 329 33 346 2.90e-40 146
MS.gene015506.t1 MTR_4g115990 30.282 284 169 5 47 329 46 301 3.90e-40 144
MS.gene015506.t1 MTR_4g087130 34.251 327 187 11 43 349 22 340 4.28e-40 145
MS.gene015506.t1 MTR_1g070135 29.213 267 170 7 14 277 10 260 6.65e-39 140
MS.gene015506.t1 MTR_7g016090 28.882 322 209 9 17 336 14 317 7.43e-39 141
MS.gene015506.t1 MTR_1g032250 30.925 346 218 9 8 350 37 364 7.77e-39 142
MS.gene015506.t1 MTR_7g016090 28.882 322 209 9 17 336 16 319 8.09e-39 141
MS.gene015506.t1 MTR_2g069060 30.952 294 174 7 46 329 48 322 1.07e-38 141
MS.gene015506.t1 MTR_1g032220 29.513 349 219 9 8 350 37 364 2.72e-38 140
MS.gene015506.t1 MTR_1g043810 28.783 337 221 9 8 340 20 341 3.08e-38 140
MS.gene015506.t1 MTR_5g005570 30.573 314 185 10 46 356 36 319 3.43e-38 139
MS.gene015506.t1 MTR_7g102720 31.271 291 185 9 65 351 49 328 4.24e-38 139
MS.gene015506.t1 MTR_8g093930 27.954 347 221 7 17 355 24 349 5.27e-38 139
MS.gene015506.t1 MTR_1g011580 28.060 335 215 8 11 338 22 337 1.06e-37 139
MS.gene015506.t1 MTR_0056s0160 35.407 209 130 3 122 329 1 205 1.06e-37 135
MS.gene015506.t1 MTR_2g069300 27.761 335 224 9 8 338 19 339 2.33e-37 137
MS.gene015506.t1 MTR_7g451860 32.593 270 170 6 46 313 40 299 3.23e-37 137
MS.gene015506.t1 MTR_7g047670 32.593 270 170 6 46 313 40 299 3.23e-37 137
MS.gene015506.t1 MTR_2g072910 30.909 275 175 6 8 280 17 278 4.85e-37 135
MS.gene015506.t1 MTR_6g015950 28.743 334 217 10 6 336 3 318 6.96e-37 136
MS.gene015506.t1 MTR_1g043775 28.869 336 220 9 8 339 20 340 1.28e-36 135
MS.gene015506.t1 MTR_8g041600 27.928 333 210 10 8 329 33 346 1.32e-36 136
MS.gene015506.t1 MTR_2g083030 30.189 318 195 9 32 342 18 315 2.07e-36 134
MS.gene015506.t1 MTR_0032s0040 32.229 332 201 9 8 329 28 345 2.39e-36 135
MS.gene015506.t1 MTR_1g048940 25.387 323 222 9 15 334 20 326 5.66e-36 134
MS.gene015506.t1 MTR_8g062600 28.235 340 225 8 8 342 33 358 5.81e-36 134
MS.gene015506.t1 MTR_1g043760 28.487 337 216 9 8 338 20 337 6.96e-36 134
MS.gene015506.t1 MTR_1g043770 29.878 328 204 10 8 329 20 327 9.03e-36 133
MS.gene015506.t1 MTR_7g016080 29.808 312 194 8 17 326 14 302 5.21e-35 130
MS.gene015506.t1 MTR_2g068800 29.966 297 162 8 8 295 22 281 1.10e-34 129
MS.gene015506.t1 MTR_4g024660 26.979 341 228 8 8 342 33 358 1.92e-34 130
MS.gene015506.t1 MTR_6g092620 30.496 282 172 9 47 321 3 267 2.79e-34 128
MS.gene015506.t1 MTR_7g078010 29.412 340 218 8 8 339 33 358 4.02e-34 129
MS.gene015506.t1 MTR_1g070185 28.863 343 214 10 8 344 34 352 6.15e-34 129
MS.gene015506.t1 MTR_8g063070 27.193 342 226 10 8 342 33 358 6.57e-34 129
MS.gene015506.t1 MTR_1g070100 30.385 260 166 6 103 352 8 262 5.31e-33 124
MS.gene015506.t1 MTR_1g070085 30.385 260 166 6 103 352 12 266 7.56e-33 123
MS.gene015506.t1 MTR_7g056347 27.697 343 224 10 8 341 33 360 4.00e-32 124
MS.gene015506.t1 MTR_2g083000 29.225 284 181 11 33 313 22 288 5.24e-32 122
MS.gene015506.t1 MTR_8g469400 27.746 346 206 10 8 342 33 345 7.24e-32 123
MS.gene015506.t1 MTR_8g093980 27.950 322 207 8 17 330 36 340 8.04e-32 123
MS.gene015506.t1 MTR_8g006930 28.739 341 218 10 8 340 33 356 5.09e-31 121
MS.gene015506.t1 MTR_4g123020 27.632 304 185 8 47 337 20 301 5.82e-31 120
MS.gene015506.t1 MTR_2g019370 27.815 302 191 8 47 337 28 313 1.81e-30 119
MS.gene015506.t1 MTR_8g009080 33.047 233 141 7 47 276 94 314 7.96e-30 117
MS.gene015506.t1 MTR_4g074130 28.428 299 190 8 46 340 39 317 1.29e-29 116
MS.gene015506.t1 MTR_2g025120 29.437 231 150 4 48 277 5 223 1.35e-29 114
MS.gene015506.t1 MTR_0009s0050 41.429 140 78 3 205 343 16 152 1.64e-29 112
MS.gene015506.t1 MTR_8g009150 28.188 298 181 8 47 340 60 328 1.64e-29 116
MS.gene015506.t1 MTR_8g009080 33.478 230 138 7 47 273 94 311 2.48e-29 115
MS.gene015506.t1 MTR_3g083370 30.043 233 150 4 46 277 3 223 2.60e-29 113
MS.gene015506.t1 MTR_1g027290 28.358 335 212 9 16 338 1 319 3.11e-29 115
MS.gene015506.t1 MTR_8g009120 28.479 309 194 8 37 340 50 336 7.22e-29 115
MS.gene015506.t1 MTR_2g069060 28.571 259 156 7 29 277 9 248 1.14e-28 112
MS.gene015506.t1 MTR_3g040410 28.929 280 187 7 45 323 4 272 1.56e-28 113
MS.gene015506.t1 MTR_8g009170 28.889 270 176 6 8 276 28 282 2.09e-28 112
MS.gene015506.t1 MTR_7g056393 28.221 326 211 9 8 326 33 342 3.96e-28 113
MS.gene015506.t1 MTR_2g070870 26.923 286 185 8 46 325 27 294 1.55e-27 110
MS.gene015506.t1 MTR_8g041600 27.338 278 175 9 8 277 33 291 1.99e-27 110
MS.gene015506.t1 MTR_1g043770 30.147 272 168 9 8 276 20 272 2.43e-27 109
MS.gene015506.t1 MTR_1g086550 28.267 329 187 12 35 337 8 313 2.97e-27 110
MS.gene015506.t1 MTR_2g033270 28.477 302 194 8 44 337 11 298 4.42e-27 109
MS.gene015506.t1 MTR_1g043810 27.509 269 181 6 8 276 20 274 4.78e-27 109
MS.gene015506.t1 MTR_4g100600 29.221 308 196 11 46 342 8 304 5.58e-27 109
MS.gene015506.t1 MTR_4g119410 27.139 339 226 9 8 340 33 356 8.83e-27 109
MS.gene015506.t1 MTR_0009s0400 43.590 117 64 2 214 329 1 116 1.64e-26 103
MS.gene015506.t1 MTR_8g461330 27.027 296 180 9 46 325 26 301 1.90e-26 108
MS.gene015506.t1 MTR_7g056353 28.137 263 175 5 85 342 79 332 2.05e-26 110
MS.gene015506.t1 MTR_4g100590 28.713 303 198 9 49 342 6 299 3.87e-26 106
MS.gene015506.t1 MTR_1g043775 27.509 269 181 6 8 276 20 274 4.74e-26 106
MS.gene015506.t1 MTR_1g027310 30.169 295 159 10 46 338 48 297 2.54e-25 104
MS.gene015506.t1 MTR_8g009180 31.441 229 138 6 125 338 51 275 8.65e-25 102
MS.gene015506.t1 MTR_4g132770 41.071 112 64 2 213 323 28 138 3.52e-23 94.7
MS.gene015506.t1 MTR_7g078010 27.407 270 182 6 8 277 33 288 1.19e-22 96.7
MS.gene015506.t1 MTR_8g102600 26.959 319 208 10 42 342 3 314 1.79e-22 96.7
MS.gene015506.t1 MTR_8g030880 27.476 313 203 11 48 351 6 303 5.39e-21 92.4
MS.gene015506.t1 MTR_4g096840 26.042 288 188 8 47 325 29 300 7.87e-21 92.4
MS.gene015506.t1 MTR_3g464530 27.562 283 161 11 47 313 34 288 1.76e-20 91.3
MS.gene015506.t1 MTR_1g070110 28.390 236 129 7 92 323 1 200 3.19e-20 88.6
MS.gene015506.t1 MTR_6g088665 27.915 283 178 9 70 331 38 315 1.22e-19 89.0
MS.gene015506.t1 MTR_6g088665 27.562 283 178 9 70 331 38 314 1.30e-19 89.0
MS.gene015506.t1 MTR_0009s0410 29.630 162 103 3 4 165 8 158 1.33e-19 85.1
MS.gene015506.t1 MTR_4g021380 25.172 290 200 9 68 350 32 311 3.06e-19 87.4
MS.gene015506.t1 MTR_5g025090 26.117 291 191 8 47 334 5 274 9.32e-19 85.9
MS.gene015506.t1 MTR_4g100590 28.800 250 161 8 102 342 11 252 3.54e-18 83.6
MS.gene015506.t1 MTR_7g077670 24.333 300 181 8 72 351 30 303 5.26e-18 84.0
MS.gene015506.t1 MTR_2g072930 28.846 156 100 4 8 162 17 162 6.97e-17 77.8
MS.gene015506.t1 MTR_5g025050 25.256 293 197 8 47 337 5 277 1.02e-16 80.1
MS.gene015506.t1 MTR_3g108520 26.936 297 181 12 68 348 32 308 1.15e-16 80.1
MS.gene015506.t1 MTR_4g011690 24.684 316 212 9 45 350 7 306 1.53e-15 76.6
MS.gene015506.t1 MTR_7g090520 26.452 310 202 13 47 347 10 302 2.16e-15 76.6
MS.gene015506.t1 MTR_4g011720 25.566 309 215 9 46 350 8 305 2.63e-15 76.3
MS.gene015506.t1 MTR_8g102600 26.154 260 169 8 101 342 10 264 1.41e-14 73.6
MS.gene015506.t1 MTR_4g100600 29.245 212 135 8 46 251 8 210 3.08e-14 71.6
MS.gene015506.t1 MTR_1g043840 27.072 181 116 4 162 329 38 215 6.78e-14 72.4
MS.gene015506.t1 MTR_2g068850 27.451 153 101 3 8 160 22 164 8.10e-13 67.4
MS.gene015506.t1 MTR_4g021360 21.818 275 200 8 84 348 37 306 1.05e-12 68.6
MS.gene015506.t1 MTR_1g032240 34.454 119 55 3 190 307 50 146 1.61e-12 65.9
MS.gene015506.t1 MTR_4g094900 29.670 182 114 5 69 241 37 213 3.32e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015506.t1 AT4G22880 78.963 347 72 1 4 349 3 349 0.0 570
MS.gene015506.t1 AT4G22880 78.963 347 72 1 4 349 3 349 0.0 570
MS.gene015506.t1 AT4G22880 78.963 347 72 1 4 349 3 349 0.0 570
MS.gene015506.t1 AT5G08640 42.522 341 180 6 5 342 3 330 3.21e-92 279
MS.gene015506.t1 AT5G08640 42.522 341 180 6 5 342 3 330 3.21e-92 279
MS.gene015506.t1 AT5G05600 38.253 332 196 5 7 337 26 349 4.14e-76 239
MS.gene015506.t1 AT3G11180 37.349 332 199 5 7 337 55 378 2.41e-75 238
MS.gene015506.t1 AT3G11180 37.349 332 199 5 7 337 55 378 2.95e-75 238
MS.gene015506.t1 AT2G38240 36.747 332 196 6 8 337 12 331 8.92e-74 233
MS.gene015506.t1 AT5G63590 42.466 292 159 5 47 337 14 297 9.51e-71 223
MS.gene015506.t1 AT4G16330 34.579 321 190 6 35 352 55 358 6.99e-69 220
MS.gene015506.t1 AT3G55970 36.607 336 201 6 7 337 13 341 1.44e-68 219
MS.gene015506.t1 AT1G49390 38.870 301 175 6 47 345 45 338 1.51e-65 211
MS.gene015506.t1 AT4G22870 85.714 105 15 0 245 349 1 105 3.78e-63 197
MS.gene015506.t1 AT5G20400 39.789 284 164 5 47 329 45 322 3.88e-62 202
MS.gene015506.t1 AT1G49390 39.015 264 155 4 83 345 1 259 5.46e-60 194
MS.gene015506.t1 AT1G17020 34.365 323 201 6 16 337 26 338 5.69e-60 197
MS.gene015506.t1 AT5G43935 35.197 304 160 7 46 344 18 289 6.17e-60 195
MS.gene015506.t1 AT4G10500 34.056 323 193 9 8 325 6 313 1.43e-59 196
MS.gene015506.t1 AT5G63600 35.473 296 177 6 47 342 33 314 1.83e-59 195
MS.gene015506.t1 AT5G54000 37.544 285 171 5 46 329 45 323 1.87e-59 196
MS.gene015506.t1 AT3G21420 34.727 311 194 5 46 353 54 358 2.98e-59 195
MS.gene015506.t1 AT5G20550 38.328 287 169 6 47 331 45 325 1.40e-58 193
MS.gene015506.t1 AT5G63600 35.354 297 177 7 47 342 33 315 1.96e-58 192
MS.gene015506.t1 AT4G22870 84.848 99 15 0 251 349 48 146 2.37e-58 186
MS.gene015506.t1 AT1G55290 33.718 347 209 10 8 351 26 354 1.23e-57 191
MS.gene015506.t1 AT5G63595 37.970 266 136 6 48 313 26 262 2.42e-57 188
MS.gene015506.t1 AT4G10490 33.531 337 199 11 11 338 6 326 3.43e-56 187
MS.gene015506.t1 AT5G05600 35.294 272 168 4 7 277 26 290 5.95e-56 184
MS.gene015506.t1 AT3G13610 33.237 346 211 10 8 351 27 354 6.75e-56 187
MS.gene015506.t1 AT4G16330 36.398 261 154 5 95 352 1 252 6.93e-56 183
MS.gene015506.t1 AT1G78550 33.750 320 191 7 15 329 25 328 2.38e-54 182
MS.gene015506.t1 AT5G54000 38.776 245 144 4 83 326 1 240 2.77e-54 179
MS.gene015506.t1 AT3G55970 35.507 276 167 5 7 277 13 282 1.41e-53 179
MS.gene015506.t1 AT3G51240 32.738 336 207 9 13 344 9 329 4.57e-53 179
MS.gene015506.t1 AT4G25300 32.308 325 208 6 16 339 25 338 4.68e-53 179
MS.gene015506.t1 AT1G17010 32.698 315 201 6 16 329 26 330 4.92e-52 176
MS.gene015506.t1 AT2G36690 31.871 342 217 8 3 338 16 347 5.63e-52 176
MS.gene015506.t1 AT2G36690 31.871 342 217 8 3 338 16 347 5.63e-52 176
MS.gene015506.t1 AT4G25310 36.630 273 164 5 68 339 71 335 3.79e-51 174
MS.gene015506.t1 AT5G07200 34.277 318 176 7 19 322 37 335 3.19e-49 170
MS.gene015506.t1 AT2G44800 31.627 332 214 8 10 340 18 337 6.73e-49 168
MS.gene015506.t1 AT5G24530 31.692 325 201 9 17 337 13 320 1.13e-48 167
MS.gene015506.t1 AT3G60290 30.409 342 224 9 11 351 19 347 8.29e-47 163
MS.gene015506.t1 AT1G78550 35.294 255 150 5 80 329 6 250 1.21e-46 160
MS.gene015506.t1 AT1G03410 32.209 326 206 8 8 329 20 334 1.51e-46 162
MS.gene015506.t1 AT4G25420 32.558 344 199 9 17 346 38 362 1.52e-46 162
MS.gene015506.t1 AT1G03410 32.209 326 206 8 8 329 57 371 3.27e-46 162
MS.gene015506.t1 AT3G19000 34.494 316 180 10 25 326 15 317 1.20e-45 159
MS.gene015506.t1 AT5G07480 33.898 295 180 9 47 334 44 330 1.25e-45 159
MS.gene015506.t1 AT1G60980 32.353 340 202 8 19 346 36 359 1.39e-45 160
MS.gene015506.t1 AT5G63580 40.693 231 128 5 47 277 19 240 3.09e-44 152
MS.gene015506.t1 AT1G15550 30.448 335 210 12 13 341 24 341 3.14e-44 156
MS.gene015506.t1 AT5G63580 41.048 229 126 5 47 275 19 238 3.53e-44 153
MS.gene015506.t1 AT5G51810 32.267 344 196 10 17 346 40 360 5.20e-44 156
MS.gene015506.t1 AT1G77330 33.993 303 170 11 47 338 3 286 5.67e-44 154
MS.gene015506.t1 AT3G19010 32.542 295 182 6 46 329 27 315 9.32e-44 154
MS.gene015506.t1 AT3G19010 32.542 295 182 6 46 329 27 315 9.32e-44 154
MS.gene015506.t1 AT1G06640 32.229 332 199 10 8 329 26 341 5.69e-43 153
MS.gene015506.t1 AT3G12900 30.636 346 220 10 8 351 22 349 7.94e-43 152
MS.gene015506.t1 AT1G06620 31.378 341 215 8 8 345 27 351 1.31e-42 152
MS.gene015506.t1 AT1G06650 31.193 327 209 8 8 329 26 341 1.31e-41 149
MS.gene015506.t1 AT2G30840 30.294 340 223 9 8 344 21 349 6.45e-41 147
MS.gene015506.t1 AT5G43440 32.168 286 181 7 47 329 62 337 9.80e-41 147
MS.gene015506.t1 AT1G44090 32.121 330 195 9 18 336 42 353 1.74e-40 147
MS.gene015506.t1 AT5G59530 29.586 338 213 8 8 337 24 344 1.79e-40 146
MS.gene015506.t1 AT1G05010 32.246 276 172 6 48 321 5 267 2.55e-40 145
MS.gene015506.t1 AT1G80330 30.421 309 193 7 46 345 48 343 4.39e-40 145
MS.gene015506.t1 AT1G03400 29.697 330 199 9 8 329 20 324 5.62e-40 144
MS.gene015506.t1 AT3G51240 34.387 253 155 6 95 344 1 245 5.89e-40 142
MS.gene015506.t1 AT1G80340 31.307 329 201 9 18 341 26 334 6.09e-40 144
MS.gene015506.t1 AT1G12010 29.592 294 191 6 46 338 6 284 9.60e-40 143
MS.gene015506.t1 AT5G43450 30.030 333 216 8 8 337 24 342 5.99e-39 142
MS.gene015506.t1 AT3G61400 30.347 346 204 10 8 336 25 350 8.41e-39 142
MS.gene015506.t1 AT3G19000 32.364 275 160 9 25 285 15 277 9.82e-39 139
MS.gene015506.t1 AT1G06645 29.787 329 208 7 8 329 39 351 1.15e-38 142
MS.gene015506.t1 AT5G59540 29.518 332 210 9 6 329 23 338 1.28e-38 141
MS.gene015506.t1 AT2G30830 27.941 340 227 8 8 344 21 345 3.23e-38 140
MS.gene015506.t1 AT4G21690 29.393 313 191 8 7 310 17 308 5.49e-38 139
MS.gene015506.t1 AT1G62380 29.932 294 190 8 46 338 6 284 6.10e-38 138
MS.gene015506.t1 AT1G04350 28.267 329 211 8 8 329 22 332 2.25e-37 138
MS.gene015506.t1 AT4G21200 30.667 300 186 9 46 342 41 321 5.13e-37 136
MS.gene015506.t1 AT1G04380 30.690 290 177 8 47 329 45 317 8.44e-37 136
MS.gene015506.t1 AT2G30840 30.000 340 218 10 8 344 21 343 9.03e-37 136
MS.gene015506.t1 AT5G12270 28.571 343 217 9 16 350 30 352 4.07e-36 134
MS.gene015506.t1 AT2G19590 30.249 281 173 8 46 321 10 272 3.64e-35 130
MS.gene015506.t1 AT4G25310 32.234 273 148 5 68 339 71 307 3.79e-35 131
MS.gene015506.t1 AT1G03400 27.374 358 199 10 8 329 20 352 3.07e-34 130
MS.gene015506.t1 AT1G06620 32.222 270 168 6 8 276 27 282 9.47e-34 126
MS.gene015506.t1 AT1G06640 31.560 282 172 7 8 283 26 292 3.35e-33 125
MS.gene015506.t1 AT1G06640 31.884 276 167 7 8 277 26 286 4.29e-33 124
MS.gene015506.t1 AT3G19010 29.153 295 162 6 46 329 27 285 4.33e-33 125
MS.gene015506.t1 AT3G19010 30.435 253 160 5 46 287 27 274 7.14e-33 124
MS.gene015506.t1 AT2G25450 28.406 345 222 11 8 345 21 347 1.59e-32 125
MS.gene015506.t1 AT1G06650 30.627 271 177 5 8 277 26 286 3.45e-32 123
MS.gene015506.t1 AT4G25420 31.136 273 158 7 17 277 38 292 7.24e-32 122
MS.gene015506.t1 AT2G34555 29.766 299 184 9 47 337 27 307 1.77e-31 121
MS.gene015506.t1 AT1G30040 27.946 297 193 7 47 337 31 312 3.36e-31 121
MS.gene015506.t1 AT5G43440 32.468 231 145 6 47 276 62 282 1.51e-30 118
MS.gene015506.t1 AT5G07480 35.023 217 128 7 125 334 11 221 2.12e-30 116
MS.gene015506.t1 AT3G49620 32.759 290 175 11 69 343 63 347 2.91e-30 119
MS.gene015506.t1 AT5G51810 30.882 272 162 7 17 280 40 293 5.82e-30 116
MS.gene015506.t1 AT3G61400 30.282 284 164 8 8 277 25 288 6.87e-30 116
MS.gene015506.t1 AT2G19590 30.864 243 148 7 84 321 30 257 5.34e-29 114
MS.gene015506.t1 AT2G30840 29.630 270 178 7 8 276 21 279 1.25e-28 113
MS.gene015506.t1 AT5G43450 30.370 270 173 7 8 276 24 279 1.29e-28 112
MS.gene015506.t1 AT3G49630 29.467 319 196 11 47 342 9 321 1.81e-28 113
MS.gene015506.t1 AT3G49630 31.034 290 178 10 69 342 34 317 2.53e-28 113
MS.gene015506.t1 AT5G59540 28.159 277 179 7 6 277 23 284 9.13e-28 110
MS.gene015506.t1 AT1G78440 26.073 303 194 9 47 337 18 302 1.80e-27 110
MS.gene015506.t1 AT3G50210 27.914 326 198 13 47 342 8 326 5.06e-27 109
MS.gene015506.t1 AT3G50210 27.914 326 198 13 47 342 8 326 5.06e-27 109
MS.gene015506.t1 AT3G50210 27.914 326 198 13 47 342 8 326 5.06e-27 109
MS.gene015506.t1 AT1G04380 30.252 238 144 7 47 279 45 265 9.21e-27 107
MS.gene015506.t1 AT1G50960 28.214 280 188 6 28 307 25 291 1.21e-26 108
MS.gene015506.t1 AT1G02400 29.861 288 177 11 63 337 34 309 5.68e-26 106
MS.gene015506.t1 AT4G25300 33.155 187 120 4 165 350 72 254 1.55e-25 103
MS.gene015506.t1 AT3G46500 28.727 275 175 8 70 330 34 301 7.61e-23 97.8
MS.gene015506.t1 AT1G14130 29.210 291 184 8 44 331 6 277 9.88e-23 97.4
MS.gene015506.t1 AT1G47990 25.694 288 181 9 47 321 15 282 2.53e-22 96.3
MS.gene015506.t1 AT3G47190 26.786 280 169 9 47 310 32 291 3.16e-20 90.5
MS.gene015506.t1 AT4G23340 27.703 296 174 11 73 351 30 302 7.62e-20 89.4
MS.gene015506.t1 AT1G30040 26.027 219 151 5 65 277 40 253 1.17e-18 85.1
MS.gene015506.t1 AT1G14120 26.214 309 188 9 47 339 8 292 1.38e-18 85.5
MS.gene015506.t1 AT1G14120 26.214 309 188 9 47 339 8 292 1.38e-18 85.5
MS.gene015506.t1 AT1G14120 26.214 309 188 9 47 339 8 292 1.38e-18 85.5
MS.gene015506.t1 AT3G49630 32.292 192 118 7 158 342 62 248 2.20e-18 84.0
MS.gene015506.t1 AT3G46500 26.573 286 188 8 40 309 2 281 4.72e-18 84.0
MS.gene015506.t1 AT3G50210 30.964 197 120 7 158 342 52 244 1.28e-17 81.6
MS.gene015506.t1 AT4G03070 27.097 310 190 11 46 339 13 302 8.51e-16 77.8
MS.gene015506.t1 AT1G35190 26.403 303 191 9 49 331 14 304 1.25e-15 77.4
MS.gene015506.t1 AT4G23340 30.319 188 118 7 171 351 3 184 1.39e-15 75.1
MS.gene015506.t1 AT1G80320 25.667 300 187 9 47 331 9 287 3.56e-15 75.9
MS.gene015506.t1 AT3G46490 25.773 291 192 9 70 341 34 319 5.30e-15 75.5
MS.gene015506.t1 AT1G52820 25.725 276 177 7 66 331 32 289 5.85e-14 72.4
MS.gene015506.t1 AT1G02400 26.522 230 146 8 63 280 34 252 6.46e-14 71.6
MS.gene015506.t1 AT3G46500 27.679 224 144 7 121 330 8 227 1.33e-13 70.5
MS.gene015506.t1 AT3G46500 27.679 224 144 7 121 330 8 227 1.33e-13 70.5
MS.gene015506.t1 AT5G51310 23.741 278 180 9 70 328 22 286 8.73e-13 68.9
MS.gene015506.t1 AT3G46490 25.098 255 168 8 70 304 34 285 3.26e-12 67.0
MS.gene015506.t1 AT1G52800 24.742 291 201 9 46 331 9 286 5.16e-12 66.6
MS.gene015506.t1 AT3G46500 29.091 165 110 3 171 330 3 165 5.86e-12 64.3
MS.gene015506.t1 AT4G03050 37.273 110 66 3 227 334 274 382 9.41e-12 66.2
MS.gene015506.t1 AT4G03050 37.273 110 66 3 227 334 274 382 9.41e-12 66.2
MS.gene015506.t1 AT4G16765 27.168 173 114 5 165 329 59 227 6.00e-11 62.4

Find 62 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTCTCACATATTCTTT+TGG 0.172725 5.4:-5812364 None:intergenic
AGCTCTGGCTGAGGGCAAAT+TGG 0.266598 5.4:-5813862 None:intergenic
TATGCAAATGATCAAAGTTC+TGG 0.273062 5.4:+5812643 MS.gene015506:CDS
ATGTTTGTTAACTCTTCTTT+TGG 0.313451 5.4:-5812382 None:intergenic
TCATCGTGGATTGGTGAATA+AGG 0.330905 5.4:+5814071 MS.gene015506:CDS
GCAAACCTGGGACCATATTA+TGG 0.336556 5.4:-5813936 None:intergenic
GATTCAATTCTCATGCATAT+TGG 0.346090 5.4:+5814003 MS.gene015506:CDS
TCTGGGAAGATTCAAGGTTA+TGG 0.360224 5.4:+5812661 MS.gene015506:CDS
ATAAACGTGATTTGTCTATA+TGG 0.368270 5.4:+5812758 MS.gene015506:CDS
TCTTCAGATGAAATAGTTAG+AGG 0.369970 5.4:+5812475 MS.gene015506:CDS
TAAGTGAACTTACATCTGTA+TGG 0.386015 5.4:-5813903 None:intergenic
TACATTCCTCCTCCATAATA+TGG 0.386987 5.4:+5813924 MS.gene015506:CDS
AGTCCTAGCTAGCAAGATAA+TGG 0.387543 5.4:+5813741 MS.gene015506:CDS
GTGCGAGGTGGAAACCTTGC+TGG 0.390975 5.4:-5814186 None:intergenic
ATGCTAGTGGTCAACTTGAA+TGG 0.403231 5.4:+5812701 MS.gene015506:CDS
TAAGAAAGCTGCAGAGGAAT+GGG 0.406966 5.4:+5812516 MS.gene015506:CDS
CTTCCATTATCTTGCTAGCT+AGG 0.422131 5.4:-5813744 None:intergenic
GTATAATCAGCAGGTGTCTT+AGG 0.424548 5.4:-5812781 None:intergenic
GTTATCTCTTGAACTAGGAT+TGG 0.435827 5.4:+5813768 MS.gene015506:CDS
ATTAATCGTTTGAAGAAAGC+TGG 0.437968 5.4:+5812580 MS.gene015506:CDS
TGCTAGTGGTCAACTTGAAT+GGG 0.440560 5.4:+5812702 MS.gene015506:CDS
GCTCTGGCTGAGGGCAAATT+GGG 0.441246 5.4:-5813861 None:intergenic
CAAAGTTCTGGGAAGATTCA+AGG 0.454252 5.4:+5812655 MS.gene015506:CDS
AGGTCTATTGTTGGAACTTG+AGG 0.468565 5.4:-5812439 None:intergenic
GACAAATCACGTTTATCCTC+TGG 0.481341 5.4:-5812751 None:intergenic
ATGCAAATGATCAAAGTTCT+GGG 0.490912 5.4:+5812644 MS.gene015506:CDS
CTCCTCCATAATATGGTCCC+AGG 0.491984 5.4:+5813931 MS.gene015506:CDS
TCATAGAAAAGTTGCAAACC+TGG 0.502750 5.4:-5813949 None:intergenic
AAACATAGGTAACATCTTTG+AGG 0.506272 5.4:+5812399 MS.gene015506:CDS
TCAACTCCAAGTGCTAGCTC+TGG 0.523457 5.4:-5813877 None:intergenic
ATATGCATGAGAATTGAATC+AGG 0.524018 5.4:-5814000 None:intergenic
TTAAGAAAGCTGCAGAGGAA+TGG 0.526405 5.4:+5812515 MS.gene015506:CDS
TCACTTACAAGTTCAGGAAG+TGG 0.529612 5.4:-5814156 None:intergenic
TCTCTTGAACTAGGATTGGA+AGG 0.540412 5.4:+5813772 MS.gene015506:CDS
CCAAGTGCTAGCTCTGGCTG+AGG 0.541831 5.4:-5813871 None:intergenic
GAAGTGTTATCTCTTGAACT+AGG 0.543050 5.4:+5813763 MS.gene015506:CDS
TATTCACCAATCCACGATGA+AGG 0.544265 5.4:-5814068 None:intergenic
ATTACTAACGTATAATCAGC+AGG 0.548828 5.4:-5812790 None:intergenic
AACTAGGATTGGAAGGAGGA+AGG 0.567524 5.4:+5813779 MS.gene015506:CDS
CCTCAGCCAGAGCTAGCACT+TGG 0.570476 5.4:+5813871 MS.gene015506:CDS
AAAGAAGAGTTAACAAACAT+AGG 0.572842 5.4:+5812385 MS.gene015506:CDS
CTGGGACCATATTATGGAGG+AGG 0.581004 5.4:-5813930 None:intergenic
AAGTATCCTTCATCGTGGAT+TGG 0.581851 5.4:+5814062 MS.gene015506:CDS
AAGTGAACTTACATCTGTAT+GGG 0.583824 5.4:-5813902 None:intergenic
CATAGAAAAGTTGCAAACCT+GGG 0.593454 5.4:-5813948 None:intergenic
GTTGAAAGCTTAGCCTTGAG+TGG 0.594566 5.4:+5812328 MS.gene015506:CDS
GAAGCTTAAGAAAGCTGCAG+AGG 0.604993 5.4:+5812510 MS.gene015506:CDS
TTATACAAACATGGGAAAGG+TGG 0.608367 5.4:+5812297 None:intergenic
TTATTATACAAACATGGGAA+AGG 0.609803 5.4:+5812294 None:intergenic
GATTGATGCTATACCACTCA+AGG 0.616412 5.4:-5812341 None:intergenic
ACAATTGAGATACTTAGCAA+TGG 0.617144 5.4:+5814030 MS.gene015506:CDS
AAATTAGCTAATAATGCTAG+TGG 0.631164 5.4:+5812688 MS.gene015506:CDS
CAAGTGCTAGCTCTGGCTGA+GGG 0.640524 5.4:-5813870 None:intergenic
GGTTACAAGTGAATATGCAA+AGG 0.645291 5.4:+5813711 MS.gene015506:CDS
TGCTGAGCAAAAGTGCGAGG+TGG 0.649651 5.4:-5814198 None:intergenic
TAAGATCATCAGATATACCA+TGG 0.652279 5.4:-5812558 None:intergenic
AAGAAAGCTGCAGAGGAATG+GGG 0.653446 5.4:+5812517 MS.gene015506:CDS
TACAAAAGTATCCTTCATCG+TGG 0.668677 5.4:+5814057 MS.gene015506:CDS
CTTGAACTAGGATTGGAAGG+AGG 0.674989 5.4:+5813775 MS.gene015506:CDS
AACCTGGGACCATATTATGG+AGG 0.688079 5.4:-5813933 None:intergenic
GTGATGCATCTAGTGAACCA+TGG 0.722158 5.4:+5812541 MS.gene015506:CDS
ATATGCTGAGCAAAAGTGCG+AGG 0.769261 5.4:-5814201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATGAAAAAATAATTAAA+TGG - chr5.4:5813468-5813487 None:intergenic 10.0%
!! AAAACATGCAAAAAATAATA+AGG - chr5.4:5813656-5813675 None:intergenic 15.0%
!! AAATTTATTGATATTACAAG+TGG + chr5.4:5813606-5813625 MS.gene015506:intron 15.0%
!! AGACTAACAAATTATAAATA+AGG - chr5.4:5812934-5812953 None:intergenic 15.0%
!! TTAAATTGATAAGAGAAAAA+AGG - chr5.4:5813327-5813346 None:intergenic 15.0%
!!! ACAAAAAACTTATTTTTACA+TGG - chr5.4:5813516-5813535 None:intergenic 15.0%
!!! TTCTATTTTAATATTGAGTT+TGG + chr5.4:5813209-5813228 MS.gene015506:intron 15.0%
!! AAAAAAACCAAAGAATGAAT+TGG - chr5.4:5812850-5812869 None:intergenic 20.0%
!! CAAAAAATGGAATATTTAGA+AGG - chr5.4:5813552-5813571 None:intergenic 20.0%
!! TCAAGTCAAAAATTTACTAA+TGG + chr5.4:5813183-5813202 MS.gene015506:intron 20.0%
!!! ATATTCATCACAAACTTTTT+AGG + chr5.4:5814220-5814239 MS.gene015506:CDS 20.0%
!!! TTATTTTCCAATTCATTCTT+TGG + chr5.4:5812840-5812859 MS.gene015506:intron 20.0%
! AAAGAAGAGTTAACAAACAT+AGG + chr5.4:5812385-5812404 MS.gene015506:CDS 25.0%
! AAATTAGCTAATAATGCTAG+TGG + chr5.4:5812688-5812707 MS.gene015506:CDS 25.0%
! AGGAAAAAGTTAGAATATCT+TGG + chr5.4:5814091-5814110 MS.gene015506:CDS 25.0%
! ATTGATAAGAGAAAAAAGGT+TGG - chr5.4:5813323-5813342 None:intergenic 25.0%
! CACAAAGAAGAAAAACATAA+GGG + chr5.4:5813091-5813110 MS.gene015506:intron 25.0%
! GGAAAAAGTTAGAATATCTT+GGG + chr5.4:5814092-5814111 MS.gene015506:CDS 25.0%
! TAATGGTCAAACACAAAAAA+TGG - chr5.4:5813565-5813584 None:intergenic 25.0%
! TCACAAAGAAGAAAAACATA+AGG + chr5.4:5813090-5813109 MS.gene015506:intron 25.0%
! TTTGAGGAAGAAAAAAAAGA+AGG + chr5.4:5812415-5812434 MS.gene015506:CDS 25.0%
!! ATAAACGTGATTTGTCTATA+TGG + chr5.4:5812758-5812777 MS.gene015506:CDS 25.0%
!! TATTTCTCTTTTTCTTCAAC+AGG - chr5.4:5812625-5812644 None:intergenic 25.0%
!! TTCAGAATAATTTTCTCCTT+AGG - chr5.4:5814135-5814154 None:intergenic 25.0%
!! TTTTAATATTGAGTTTGGCT+TGG + chr5.4:5813214-5813233 MS.gene015506:intron 25.0%
!! TTTTCTTCTTTGTGATGATT+TGG - chr5.4:5813085-5813104 None:intergenic 25.0%
!!! AATGTCATTTGTGTTTTACT+TGG - chr5.4:5813428-5813447 None:intergenic 25.0%
!!! AGCTTAATTGTAGTTTTTAG+TGG + chr5.4:5812890-5812909 MS.gene015506:intron 25.0%
!!! ATACATGTGTTTTTGAAATC+TGG - chr5.4:5813368-5813387 None:intergenic 25.0%
!!! ATGTTTGTTAACTCTTCTTT+TGG - chr5.4:5812385-5812404 None:intergenic 25.0%
!!! ATTTCTTTTAGGTCTATTGT+TGG - chr5.4:5812451-5812470 None:intergenic 25.0%
!!! CTGAAGAGTTTATTTCTTTT+AGG - chr5.4:5812462-5812481 None:intergenic 25.0%
!!! TACATGTGTTTTTGAAATCT+GGG - chr5.4:5813367-5813386 None:intergenic 25.0%
AAACATAGGTAACATCTTTG+AGG + chr5.4:5812399-5812418 MS.gene015506:CDS 30.0%
AAGTGAACTTACATCTGTAT+GGG - chr5.4:5813905-5813924 None:intergenic 30.0%
ACAATTGAGATACTTAGCAA+TGG + chr5.4:5814030-5814049 MS.gene015506:CDS 30.0%
ATATGCATGAGAATTGAATC+AGG - chr5.4:5814003-5814022 None:intergenic 30.0%
ATGCAAATGATCAAAGTTCT+GGG + chr5.4:5812644-5812663 MS.gene015506:CDS 30.0%
ATTAATCGTTTGAAGAAAGC+TGG + chr5.4:5812580-5812599 MS.gene015506:CDS 30.0%
ATTACTAACGTATAATCAGC+AGG - chr5.4:5812793-5812812 None:intergenic 30.0%
GATTCAATTCTCATGCATAT+TGG + chr5.4:5814003-5814022 MS.gene015506:CDS 30.0%
TAAGATCATCAGATATACCA+TGG - chr5.4:5812561-5812580 None:intergenic 30.0%
TAAGTGAACTTACATCTGTA+TGG - chr5.4:5813906-5813925 None:intergenic 30.0%
TATGCAAATGATCAAAGTTC+TGG + chr5.4:5812643-5812662 MS.gene015506:CDS 30.0%
TCTTCAGATGAAATAGTTAG+AGG + chr5.4:5812475-5812494 MS.gene015506:CDS 30.0%
! AGAATAATTTTCTCCTTAGG+TGG - chr5.4:5814132-5814151 None:intergenic 30.0%
! TTGGTCTCACATATTCTTTT+GGG - chr5.4:5812366-5812385 None:intergenic 30.0%
! TTTGGTCTCACATATTCTTT+TGG - chr5.4:5812367-5812386 None:intergenic 30.0%
!! TCATCACAAACTTTTTAGGA+AGG + chr5.4:5814224-5814243 MS.gene015506:CDS 30.0%
!! TCTTTTTCACTTACAAGTTC+AGG - chr5.4:5814165-5814184 None:intergenic 30.0%
AAAGCTATGCAAAACGCTAA+TGG - chr5.4:5813582-5813601 None:intergenic 35.0%
CAATATATGACGCTACATGA+AGG + chr5.4:5813039-5813058 MS.gene015506:intron 35.0%
CATAGAAAAGTTGCAAACCT+GGG - chr5.4:5813951-5813970 None:intergenic 35.0%
GGTTACAAGTGAATATGCAA+AGG + chr5.4:5813711-5813730 MS.gene015506:CDS 35.0%
GTCCAACTCTTATGAAAGTT+GGG - chr5.4:5813009-5813028 None:intergenic 35.0%
GTTATCTCTTGAACTAGGAT+TGG + chr5.4:5813768-5813787 MS.gene015506:CDS 35.0%
TAAGTGAAAAAGAACCAGCA+AGG + chr5.4:5814172-5814191 MS.gene015506:CDS 35.0%
TACATTCCTCCTCCATAATA+TGG + chr5.4:5813924-5813943 MS.gene015506:CDS 35.0%
TACCCAACTTTCATAAGAGT+TGG + chr5.4:5813004-5813023 MS.gene015506:intron 35.0%
TCATAGAAAAGTTGCAAACC+TGG - chr5.4:5813952-5813971 None:intergenic 35.0%
! AACTTTTCTATGAGGGCAAA+TGG + chr5.4:5813959-5813978 MS.gene015506:CDS 35.0%
! ACTTTTCTATGAGGGCAAAT+GGG + chr5.4:5813960-5813979 MS.gene015506:CDS 35.0%
! AGGTTTGCAACTTTTCTATG+AGG + chr5.4:5813951-5813970 MS.gene015506:CDS 35.0%
! CTTTCATTGCATTTTTCCAG+AGG + chr5.4:5812735-5812754 MS.gene015506:CDS 35.0%
! GAAGTGTTATCTCTTGAACT+AGG + chr5.4:5813763-5813782 MS.gene015506:CDS 35.0%
! GGTTTGCAACTTTTCTATGA+GGG + chr5.4:5813952-5813971 MS.gene015506:CDS 35.0%
!! CAAACTTTTTAGGAAGGATG+AGG + chr5.4:5814230-5814249 MS.gene015506:CDS 35.0%
!! TACAAAAGTATCCTTCATCG+TGG + chr5.4:5814057-5814076 MS.gene015506:CDS 35.0%
AAGTATCCTTCATCGTGGAT+TGG + chr5.4:5814062-5814081 MS.gene015506:CDS 40.0%
AGGTCTATTGTTGGAACTTG+AGG - chr5.4:5812442-5812461 None:intergenic 40.0%
AGTCCTAGCTAGCAAGATAA+TGG + chr5.4:5813741-5813760 MS.gene015506:CDS 40.0%
ATGCTAGTGGTCAACTTGAA+TGG + chr5.4:5812701-5812720 MS.gene015506:CDS 40.0%
CTTCCATTATCTTGCTAGCT+AGG - chr5.4:5813747-5813766 None:intergenic 40.0%
GACAAATCACGTTTATCCTC+TGG - chr5.4:5812754-5812773 None:intergenic 40.0%
GATTGATGCTATACCACTCA+AGG - chr5.4:5812344-5812363 None:intergenic 40.0%
GGTCCAACTCTTATGAAAGT+TGG - chr5.4:5813010-5813029 None:intergenic 40.0%
GTATAATCAGCAGGTGTCTT+AGG - chr5.4:5812784-5812803 None:intergenic 40.0%
TAAGAAAGCTGCAGAGGAAT+GGG + chr5.4:5812516-5812535 MS.gene015506:CDS 40.0%
TATTCACCAATCCACGATGA+AGG - chr5.4:5814071-5814090 None:intergenic 40.0%
TCACTTACAAGTTCAGGAAG+TGG - chr5.4:5814159-5814178 None:intergenic 40.0%
TCTCTTGAACTAGGATTGGA+AGG + chr5.4:5813772-5813791 MS.gene015506:CDS 40.0%
TCTGGGAAGATTCAAGGTTA+TGG + chr5.4:5812661-5812680 MS.gene015506:CDS 40.0%
TGCTAGTGGTCAACTTGAAT+GGG + chr5.4:5812702-5812721 MS.gene015506:CDS 40.0%
TTAAGAAAGCTGCAGAGGAA+TGG + chr5.4:5812515-5812534 MS.gene015506:CDS 40.0%
! AGTGTTTTGTGAACCACCTA+AGG + chr5.4:5814116-5814135 MS.gene015506:CDS 40.0%
!! ACTTTTTAGGAAGGATGAGG+AGG + chr5.4:5814233-5814252 MS.gene015506:CDS 40.0%
!! CAAAGTTCTGGGAAGATTCA+AGG + chr5.4:5812655-5812674 MS.gene015506:CDS 40.0%
!! TCATCGTGGATTGGTGAATA+AGG + chr5.4:5814071-5814090 MS.gene015506:CDS 40.0%
AACCTGGGACCATATTATGG+AGG - chr5.4:5813936-5813955 None:intergenic 45.0%
AACTAGGATTGGAAGGAGGA+AGG + chr5.4:5813779-5813798 MS.gene015506:CDS 45.0%
AAGAAAGCTGCAGAGGAATG+GGG + chr5.4:5812517-5812536 MS.gene015506:CDS 45.0%
AGGTTCGAAAAAGAAGCTGG+TGG + chr5.4:5813799-5813818 MS.gene015506:CDS 45.0%
CATAAGAGTTGGACCAGTGT+CGG + chr5.4:5813015-5813034 MS.gene015506:intron 45.0%
CGAAAAAGAAGCTGGTGGAA+TGG + chr5.4:5813804-5813823 MS.gene015506:CDS 45.0%
CGTCATATATTGACCGACAC+TGG - chr5.4:5813031-5813050 None:intergenic 45.0%
CTTGAACTAGGATTGGAAGG+AGG + chr5.4:5813775-5813794 MS.gene015506:CDS 45.0%
GAAGCTTAAGAAAGCTGCAG+AGG + chr5.4:5812510-5812529 MS.gene015506:CDS 45.0%
GCAAACCTGGGACCATATTA+TGG - chr5.4:5813939-5813958 None:intergenic 45.0%
GGAAGGTTCGAAAAAGAAGC+TGG + chr5.4:5813796-5813815 MS.gene015506:CDS 45.0%
GTGATGCATCTAGTGAACCA+TGG + chr5.4:5812541-5812560 MS.gene015506:CDS 45.0%
! ATATGCTGAGCAAAAGTGCG+AGG - chr5.4:5814204-5814223 None:intergenic 45.0%
! TTTGGTGTATGCATGCAGTG+AGG + chr5.4:5813690-5813709 MS.gene015506:intron 45.0%
!! GTTGAAAGCTTAGCCTTGAG+TGG + chr5.4:5812328-5812347 MS.gene015506:CDS 45.0%
!!! TTTTATCAAAATAATTTTTT+TGG + chr5.4:5813672-5813691 MS.gene015506:intron 5.0%
CTCCTCCATAATATGGTCCC+AGG + chr5.4:5813931-5813950 MS.gene015506:CDS 50.0%
CTGGGACCATATTATGGAGG+AGG - chr5.4:5813933-5813952 None:intergenic 50.0%
TCAACTCCAAGTGCTAGCTC+TGG - chr5.4:5813880-5813899 None:intergenic 50.0%
GCTCTGGCTGAGGGCAAATT+GGG - chr5.4:5813864-5813883 None:intergenic 55.0%
! AGCTCTGGCTGAGGGCAAAT+TGG - chr5.4:5813865-5813884 None:intergenic 55.0%
! TGCTGAGCAAAAGTGCGAGG+TGG - chr5.4:5814201-5814220 None:intergenic 55.0%
!! CAAGTGCTAGCTCTGGCTGA+GGG - chr5.4:5813873-5813892 None:intergenic 55.0%
CCTCAGCCAGAGCTAGCACT+TGG + chr5.4:5813871-5813890 MS.gene015506:CDS 60.0%
GTGCGAGGTGGAAACCTTGC+TGG - chr5.4:5814189-5814208 None:intergenic 60.0%
!! CCAAGTGCTAGCTCTGGCTG+AGG - chr5.4:5813874-5813893 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 5812307 5814281 5812307 ID=MS.gene015506
chr5.4 mRNA 5812307 5814281 5812307 ID=MS.gene015506.t1;Parent=MS.gene015506
chr5.4 exon 5812307 5812803 5812307 ID=MS.gene015506.t1.exon1;Parent=MS.gene015506.t1
chr5.4 CDS 5812307 5812803 5812307 ID=cds.MS.gene015506.t1;Parent=MS.gene015506.t1
chr5.4 exon 5813708 5814281 5813708 ID=MS.gene015506.t1.exon2;Parent=MS.gene015506.t1
chr5.4 CDS 5813708 5814281 5813708 ID=cds.MS.gene015506.t1;Parent=MS.gene015506.t1
Gene Sequence

>MS.gene015506

ATGGGAAAGGTGGCTCAAAGAGTTGAAAGCTTAGCCTTGAGTGGTATAGCATCAATCCCAAAAGAATATGTGAGACCAAAAGAAGAGTTAACAAACATAGGTAACATCTTTGAGGAAGAAAAAAAAGAAGGTCCTCAAGTTCCAACAATAGACCTAAAAGAAATAAACTCTTCAGATGAAATAGTTAGAGGAAAATGTAGAGAGAAGCTTAAGAAAGCTGCAGAGGAATGGGGTGTGATGCATCTAGTGAACCATGGTATATCTGATGATCTTATTAATCGTTTGAAGAAAGCTGGTGAAACATTTTTTGAGCTTCCTGTTGAAGAAAAAGAGAAATATGCAAATGATCAAAGTTCTGGGAAGATTCAAGGTTATGGAAGTAAATTAGCTAATAATGCTAGTGGTCAACTTGAATGGGAAGATTATTTCTTTCATTGCATTTTTCCAGAGGATAAACGTGATTTGTCTATATGGCCTAAGACACCTGCTGATTATACGTTAGTAATTTCTTCTCTATATACTTTCTCTTCTCATTATTTTCCAATTCATTCTTTGGTTTTTTTTTTTTTTTTAATTTTAAAAAAGCTTAATTGTAGTTTTTAGTGGTTTTGATCTCTTATATTTCCTTATTTATAATTTGTTAGTCTCTCAATTTTCATCGAAATTAATGTTGCTGTAGCATCAATTATTGACATAGTACCCAACTTTCATAAGAGTTGGACCAGTGTCGGTCAATATATGACGCTACATGAAGGTAAGTTTGAGAGAGAGACTACCAAATCATCACAAAGAAGAAAAACATAAGGGACTACAATCGCTCAAAAAATAGTAGAGTGTCACAATCGCACAATTGTAATCAGAGCGCAAAAATCACAATCAAGTCAAAAATTTACTAATGGTGTTTCTATTTTAATATTGAGTTTGGCTTGGTAAAAAAATTTATTGTACAAGTTATGTTTAAAATATGAAATGAATATATTGATTTCTTTTATCTCTTATCAATTTAAATAAAACCAACCTTTTTTCTCTTATCAATTTAAATTAGTGAGATATATAACCCAGATTTCAAAAACACATGTATGTCTGTTTCTTTTCTTAATTCTCACTTAGTTTTGTATCCAAGTAAAACACAAATGACATTGATTATATTTTGATTAACCATTTAATTATTTTTTCATTCTAGAAATGCTTAAATATGTTTTTACTCCATGTAAAAATAAGTTTTTTGTTTTTGTTTTTAGACCTTCTAAATATTCCATTTTTTGTGTTTGACCATTAGCGTTTTGCATAGCTTTCATAAAATTTATTGATATTACAAGTGGTATATATGTAATTTTCATTTTAATCCTTATTATTTTTTGCATGTTTTATCAAAATAATTTTTTTGGTGTATGCATGCAGTGAGGTTACAAGTGAATATGCAAAGGAATTAAGAGTCCTAGCTAGCAAGATAATGGAAGTGTTATCTCTTGAACTAGGATTGGAAGGAGGAAGGTTCGAAAAAGAAGCTGGTGGAATGGAAGAGCTTTTACTTCAAATGAAAATTAATTACTACCCAATTTGCCCTCAGCCAGAGCTAGCACTTGGAGTTGAAGCCCATACAGATGTAAGTTCACTTACATTCCTCCTCCATAATATGGTCCCAGGTTTGCAACTTTTCTATGAGGGCAAATGGGTCACTGCAAAATGTGTACCTGATTCAATTCTCATGCATATTGGTGACACAATTGAGATACTTAGCAATGGAAAGTACAAAAGTATCCTTCATCGTGGATTGGTGAATAAGGAAAAAGTTAGAATATCTTGGGCAGTGTTTTGTGAACCACCTAAGGAGAAAATTATTCTGAAGCCACTTCCTGAACTTGTAAGTGAAAAAGAACCAGCAAGGTTTCCACCTCGCACTTTTGCTCAGCATATTCATCACAAACTTTTTAGGAAGGATGAGGAGGAGAAGAAAGATGATCCCAAAAAATGA
Protein sequence

>MS.gene015506.t1

MGKVAQRVESLALSGIASIPKEYVRPKEELTNIGNIFEEEKKEGPQVPTIDLKEINSSDEIVRGKCREKLKKAAEEWGVMHLVNHGISDDLINRLKKAGETFFELPVEEKEKYANDQSSGKIQGYGSKLANNASGQLEWEDYFFHCIFPEDKRDLSIWPKTPADYTEVTSEYAKELRVLASKIMEVLSLELGLEGGRFEKEAGGMEELLLQMKINYYPICPQPELALGVEAHTDVSSLTFLLHNMVPGLQLFYEGKWVTAKCVPDSILMHIGDTIEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKEKIILKPLPELVSEKEPARFPPRTFAQHIHHKLFRKDEEEKKDDPKK