AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene015991

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015991.t1 MTR_8g043650 92.405 237 18 0 1 237 1 237 1.54e-163 451
MS.gene015991.t1 MTR_1g012570 94.093 237 14 0 1 237 1 237 4.74e-155 430
MS.gene015991.t1 MTR_1g105910 90.295 237 23 0 1 237 1 237 1.48e-150 419
MS.gene015991.t1 MTR_1g105920 89.912 228 23 0 1 228 1 228 1.09e-145 406
MS.gene015991.t1 MTR_2g030740 88.186 237 28 0 1 237 1 237 3.09e-145 405
MS.gene015991.t1 MTR_1g105905 85.909 220 31 0 18 237 1 220 5.21e-141 394
MS.gene015991.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 6.18e-141 394
MS.gene015991.t1 MTR_3g052870 80.365 219 24 1 1 219 1 200 5.66e-125 353
MS.gene015991.t1 MTR_5g055100 67.932 237 76 0 1 237 1 237 7.76e-119 338
MS.gene015991.t1 MTR_3g030770 73.191 235 45 3 1 225 1 227 2.23e-118 337
MS.gene015991.t1 MTR_2g085280 67.373 236 77 0 1 236 1 236 1.65e-117 335
MS.gene015991.t1 MTR_1g108510 73.191 235 45 3 1 225 1 227 1.77e-117 335
MS.gene015991.t1 MTR_0121s0080 70.464 237 69 1 1 237 1 236 2.14e-117 335
MS.gene015991.t1 MTR_2g085250 67.373 236 77 0 1 236 1 236 4.22e-117 334
MS.gene015991.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 3.50e-116 332
MS.gene015991.t1 MTR_1g106070 86.813 182 24 0 1 182 1 182 1.13e-115 328
MS.gene015991.t1 MTR_5g045560 71.730 237 67 0 1 237 1 237 1.19e-115 330
MS.gene015991.t1 MTR_1g075600 70.667 225 66 0 1 225 1 225 1.45e-114 327
MS.gene015991.t1 MTR_2g093190 71.489 235 49 3 1 225 1 227 4.53e-113 323
MS.gene015991.t1 MTR_1g108580 70.213 235 52 3 1 225 1 227 5.91e-111 318
MS.gene015991.t1 MTR_5g053390 68.889 225 70 0 1 225 1 225 1.16e-110 318
MS.gene015991.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 7.29e-99 288
MS.gene015991.t1 MTR_1g075570 64.045 178 50 1 18 195 1 164 2.46e-69 210
MS.gene015991.t1 MTR_0121s0100 78.906 128 27 0 1 128 1 128 6.30e-68 205
MS.gene015991.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 2.10e-64 196
MS.gene015991.t1 MTR_3g080940 50.262 191 91 1 7 193 7 197 6.32e-64 198
MS.gene015991.t1 MTR_3g067910 67.647 102 33 0 21 122 2 103 2.69e-44 144
MS.gene015991.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 6.26e-41 138
MS.gene015991.t1 MTR_8g086290 40.462 173 89 3 5 170 8 173 5.33e-39 133
MS.gene015991.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 2.73e-36 126
MS.gene015991.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 2.73e-36 126
MS.gene015991.t1 MTR_1g108500 58.407 113 24 2 8 118 94 185 1.74e-31 118
MS.gene015991.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 2.74e-30 111
MS.gene015991.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 2.91e-28 102
MS.gene015991.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 2.38e-24 95.1
MS.gene015991.t1 MTR_1g047550 40.559 143 67 4 9 135 2 142 5.36e-24 94.7
MS.gene015991.t1 MTR_4g131030 33.529 170 86 5 9 162 2 160 1.52e-23 94.7
MS.gene015991.t1 MTR_8g051580 37.195 164 85 3 9 169 2 150 1.57e-23 93.6
MS.gene015991.t1 MTR_8g079502 44.643 112 57 3 9 118 2 110 3.05e-23 92.8
MS.gene015991.t1 MTR_1g063160 45.536 112 56 3 9 118 2 110 4.07e-23 92.4
MS.gene015991.t1 MTR_3g067915 50.000 94 47 0 33 126 3 96 7.10e-23 89.4
MS.gene015991.t1 MTR_1g054265 43.363 113 62 1 9 121 2 112 7.59e-23 91.7
MS.gene015991.t1 MTR_8g046350 36.620 142 82 2 9 147 2 138 1.47e-21 88.2
MS.gene015991.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 4.13e-20 84.0
MS.gene015991.t1 MTR_1g053070 36.000 150 81 3 9 157 2 137 4.33e-19 83.6
MS.gene015991.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 5.70e-19 82.8
MS.gene015991.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 6.97e-19 81.6
MS.gene015991.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.20e-18 82.0
MS.gene015991.t1 MTR_3g452380 46.429 84 45 0 3 86 11 94 3.03e-18 81.3
MS.gene015991.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 4.05e-18 80.1
MS.gene015991.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 4.51e-18 79.3
MS.gene015991.t1 MTR_2g017865 32.558 172 100 4 9 170 17 182 7.10e-18 80.5
MS.gene015991.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.53e-17 79.0
MS.gene015991.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 1.71e-17 77.8
MS.gene015991.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 3.36e-17 78.6
MS.gene015991.t1 MTR_8g033220 27.876 226 129 7 10 220 3 209 4.63e-17 77.8
MS.gene015991.t1 MTR_8g033220 27.876 226 129 7 10 220 3 209 4.78e-17 77.4
MS.gene015991.t1 MTR_5g032150 30.405 148 86 2 9 156 2 132 5.22e-17 77.4
MS.gene015991.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.73e-17 77.8
MS.gene015991.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 7.10e-17 78.6
MS.gene015991.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 8.57e-17 75.9
MS.gene015991.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.11e-16 77.0
MS.gene015991.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.45e-16 76.3
MS.gene015991.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.84e-16 75.9
MS.gene015991.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 2.94e-16 76.3
MS.gene015991.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 3.13e-16 75.1
MS.gene015991.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 6.07e-16 75.9
MS.gene015991.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 7.35e-16 74.7
MS.gene015991.t1 MTR_8g066260 36.792 106 63 2 9 114 2 103 1.04e-15 74.3
MS.gene015991.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.37e-15 73.9
MS.gene015991.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.45e-15 73.9
MS.gene015991.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.66e-15 68.9
MS.gene015991.t1 MTR_3g109930 32.090 134 87 2 27 159 20 150 1.84e-15 72.0
MS.gene015991.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.55e-15 72.8
MS.gene015991.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.59e-15 72.8
MS.gene015991.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.64e-15 72.8
MS.gene015991.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.79e-15 72.8
MS.gene015991.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.82e-15 72.4
MS.gene015991.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.51e-15 69.3
MS.gene015991.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 6.12e-15 71.6
MS.gene015991.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 2.00e-14 69.3
MS.gene015991.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.27e-14 70.5
MS.gene015991.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.33e-14 70.9
MS.gene015991.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 3.63e-14 68.9
MS.gene015991.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 4.07e-14 65.5
MS.gene015991.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.82e-14 69.3
MS.gene015991.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 7.58e-14 68.9
MS.gene015991.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 9.67e-14 68.9
MS.gene015991.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.20e-13 68.6
MS.gene015991.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.71e-13 67.8
MS.gene015991.t1 MTR_4g108720 28.977 176 103 7 9 172 2 167 2.18e-13 68.9
MS.gene015991.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 9.34e-13 64.3
MS.gene015991.t1 MTR_4g051538 28.512 242 137 8 5 230 5 226 1.01e-12 65.9
MS.gene015991.t1 MTR_2g045020 30.303 165 83 7 7 159 21 165 2.53e-12 63.9
MS.gene015991.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 7.53e-12 62.4
MS.gene015991.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 9.25e-12 62.4
MS.gene015991.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 1.07e-11 62.0
MS.gene015991.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 1.31e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene015991.t1 AT5G60440 54.255 188 79 3 5 189 3 186 7.35e-62 196
MS.gene015991.t1 AT2G24840 49.390 164 72 4 6 163 60 218 7.96e-45 151
MS.gene015991.t1 AT1G65360 39.207 227 123 6 5 225 3 220 2.61e-42 143
MS.gene015991.t1 AT1G01530 42.708 192 98 4 4 192 2 184 9.79e-42 142
MS.gene015991.t1 AT4G36590 46.296 162 81 2 5 160 3 164 1.07e-39 137
MS.gene015991.t1 AT2G34440 37.349 166 92 4 9 169 2 160 2.66e-28 105
MS.gene015991.t1 AT3G66656 41.985 131 71 2 9 134 2 132 1.59e-25 99.0
MS.gene015991.t1 AT3G04100 30.864 162 108 3 2 159 7 168 1.81e-22 91.7
MS.gene015991.t1 AT1G72350 33.553 152 68 3 9 160 43 161 3.33e-22 91.3
MS.gene015991.t1 AT2G45660 34.524 168 82 6 10 162 3 157 6.51e-20 83.6
MS.gene015991.t1 AT1G28460 31.902 163 99 4 5 161 4 160 2.34e-19 82.8
MS.gene015991.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.86e-19 82.4
MS.gene015991.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.32e-19 83.2
MS.gene015991.t1 AT2G45660 34.337 166 81 6 10 160 3 155 3.32e-19 83.2
MS.gene015991.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.09e-19 83.2
MS.gene015991.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.21e-19 83.2
MS.gene015991.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.53e-19 83.2
MS.gene015991.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.73e-19 83.2
MS.gene015991.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.22e-18 82.4
MS.gene015991.t1 AT4G18960 31.092 238 138 9 5 226 15 242 1.26e-18 82.4
MS.gene015991.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
MS.gene015991.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
MS.gene015991.t1 AT4G24540 35.811 148 78 4 9 156 2 132 1.55e-18 81.6
MS.gene015991.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.52e-18 82.8
MS.gene015991.t1 AT2G22540 38.346 133 72 4 9 132 2 133 1.50e-17 79.3
MS.gene015991.t1 AT2G22540 38.346 133 72 4 9 132 2 133 1.50e-17 79.3
MS.gene015991.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.93e-17 77.4
MS.gene015991.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.74e-17 77.8
MS.gene015991.t1 AT3G57230 47.059 68 36 0 9 76 2 69 4.05e-17 75.9
MS.gene015991.t1 AT5G51870 50.000 72 36 0 5 76 21 92 4.57e-17 77.0
MS.gene015991.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.37e-17 77.8
MS.gene015991.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.42e-17 77.8
MS.gene015991.t1 AT3G58780 50.704 71 35 0 6 76 20 90 6.49e-17 77.8
MS.gene015991.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.57e-17 77.0
MS.gene015991.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.64e-17 77.8
MS.gene015991.t1 AT5G51870 53.731 67 31 0 10 76 13 79 6.68e-17 77.4
MS.gene015991.t1 AT1G77980 38.095 105 64 1 9 112 2 106 7.85e-17 78.6
MS.gene015991.t1 AT3G61120 51.471 68 33 0 9 76 2 69 8.39e-17 77.4
MS.gene015991.t1 AT1G22130 37.143 105 65 1 9 112 2 106 8.45e-17 78.6
MS.gene015991.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.49e-17 75.5
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.73e-17 73.9
MS.gene015991.t1 AT4G37940 48.529 68 35 0 9 76 2 69 9.94e-17 76.6
MS.gene015991.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.09e-16 77.4
MS.gene015991.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.18e-16 76.6
MS.gene015991.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.18e-16 75.5
MS.gene015991.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.22e-16 76.6
MS.gene015991.t1 AT1G29962 29.714 175 110 5 5 169 4 175 1.23e-16 75.5
MS.gene015991.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.27e-16 77.0
MS.gene015991.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.27e-16 77.0
MS.gene015991.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.27e-16 77.0
MS.gene015991.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.27e-16 77.0
MS.gene015991.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.32e-16 75.1
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.38e-16 74.7
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.38e-16 74.7
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.38e-16 74.7
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.38e-16 74.7
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.38e-16 74.7
MS.gene015991.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.52e-16 75.5
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene015991.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.61e-16 76.3
MS.gene015991.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.61e-16 76.3
MS.gene015991.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.71e-16 75.1
MS.gene015991.t1 AT3G54340 29.487 156 86 3 9 162 2 135 1.87e-16 76.3
MS.gene015991.t1 AT5G13790 43.011 93 44 1 9 101 2 85 2.07e-16 76.6
MS.gene015991.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.48e-16 76.3
MS.gene015991.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.81e-16 75.9
MS.gene015991.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.42e-16 74.3
MS.gene015991.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.42e-16 74.3
MS.gene015991.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.09e-16 75.1
MS.gene015991.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.62e-16 74.3
MS.gene015991.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.97e-16 74.7
MS.gene015991.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.97e-16 74.7
MS.gene015991.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.89e-16 74.3
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.98e-16 73.9
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 5.98e-16 73.9
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.47e-16 74.3
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.47e-16 74.3
MS.gene015991.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.47e-16 74.3
MS.gene015991.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.78e-16 74.7
MS.gene015991.t1 AT3G30260 29.091 165 99 4 9 172 2 149 8.30e-16 74.7
MS.gene015991.t1 AT4G11880 48.611 72 36 1 10 80 3 74 8.55e-16 73.9
MS.gene015991.t1 AT4G11880 48.611 72 36 1 10 80 3 74 8.55e-16 73.9
MS.gene015991.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.22e-16 74.7
MS.gene015991.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.06e-15 74.3
MS.gene015991.t1 AT5G23260 44.330 97 46 3 2 90 9 105 1.72e-15 73.9
MS.gene015991.t1 AT5G23260 44.330 97 46 3 2 90 9 105 1.72e-15 73.9
MS.gene015991.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.83e-15 73.2
MS.gene015991.t1 AT5G20240 47.143 70 35 1 9 76 2 71 3.15e-15 70.9
MS.gene015991.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.16e-15 72.8
MS.gene015991.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.54e-15 72.8
MS.gene015991.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.48e-15 72.8
MS.gene015991.t1 AT2G22540 37.594 133 68 5 9 132 2 128 5.11e-15 72.4
MS.gene015991.t1 AT1G17310 51.899 79 36 1 8 86 47 123 5.20e-15 72.0
MS.gene015991.t1 AT1G17310 51.899 79 36 1 8 86 58 134 6.30e-15 72.0
MS.gene015991.t1 AT5G20240 47.143 70 35 1 9 76 2 71 6.66e-15 71.2
MS.gene015991.t1 AT2G14210 46.377 69 36 1 9 76 2 70 7.39e-15 71.6
MS.gene015991.t1 AT2G14210 46.377 69 36 1 9 76 2 70 8.90e-15 71.6
MS.gene015991.t1 AT3G58780 53.333 60 28 0 6 65 14 73 1.86e-14 70.9
MS.gene015991.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.09e-14 69.3
MS.gene015991.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.20e-14 69.7
MS.gene015991.t1 AT3G58780 53.333 60 28 0 6 65 14 73 2.29e-14 70.9
MS.gene015991.t1 AT1G28450 29.518 166 102 6 5 161 4 163 2.33e-14 69.3
MS.gene015991.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.51e-14 68.9
MS.gene015991.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.78e-14 68.9
MS.gene015991.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.91e-14 68.9
MS.gene015991.t1 AT2G03710 47.143 70 35 2 9 76 2 71 4.12e-14 68.9
MS.gene015991.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.80e-14 69.7
MS.gene015991.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.06e-14 68.6
MS.gene015991.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.34e-14 68.2
MS.gene015991.t1 AT1G24260 29.707 239 136 9 9 234 2 221 8.25e-14 68.9
MS.gene015991.t1 AT5G65060 46.377 69 36 1 9 76 2 70 8.27e-14 68.2
MS.gene015991.t1 AT2G03710 47.143 70 35 2 9 76 2 71 8.85e-14 69.3
MS.gene015991.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.10e-14 68.9
MS.gene015991.t1 AT1G24260 46.377 69 36 1 9 76 2 70 1.11e-13 68.9
MS.gene015991.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.13e-13 68.2
MS.gene015991.t1 AT1G24260 53.571 56 26 0 9 64 2 57 1.15e-13 68.6
MS.gene015991.t1 AT1G47760 33.333 111 60 2 9 119 2 98 2.75e-13 66.6
MS.gene015991.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.89e-13 65.5
MS.gene015991.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.10e-13 65.9
MS.gene015991.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.00e-12 65.5
MS.gene015991.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.04e-12 65.9
MS.gene015991.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.97e-12 63.9
MS.gene015991.t1 AT1G69540 37.778 90 52 3 9 95 2 90 2.15e-11 63.2
MS.gene015991.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.29e-11 61.2
MS.gene015991.t1 AT1G69540 37.778 90 52 3 9 95 2 90 2.71e-11 62.8
MS.gene015991.t1 AT2G26320 40.000 70 40 1 9 76 18 87 3.43e-11 58.9
MS.gene015991.t1 AT1G18750 37.333 75 45 1 9 81 2 76 3.85e-11 62.4
MS.gene015991.t1 AT1G18750 37.333 75 45 1 9 81 2 76 3.95e-11 62.4
MS.gene015991.t1 AT1G18750 37.333 75 45 1 9 81 2 76 4.40e-11 62.4
MS.gene015991.t1 AT5G65080 42.029 69 39 1 9 76 9 77 4.69e-11 60.5
MS.gene015991.t1 AT2G03060 39.286 84 48 3 9 90 2 84 6.42e-11 62.0
MS.gene015991.t1 AT5G65080 43.548 62 35 0 1 62 1 62 7.04e-11 60.1
MS.gene015991.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.52e-11 61.6
MS.gene015991.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.52e-11 61.6
MS.gene015991.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.52e-11 61.6

Find 50 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1.4:-8500556 MS.gene015991:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.294464 1.4:+8500621 None:intergenic
TGGTGGGCTGGTTCCGTTGA+TGG 0.294847 1.4:-8500807 MS.gene015991:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.4:+8500964 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1.4:-8500555 MS.gene015991:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1.4:-8500570 MS.gene015991:CDS
GACTCAGATCAACCAGCTAT+TGG 0.396679 1.4:-8500892 MS.gene015991:CDS
GGTGGGCTGGTTCCGTTGAT+GGG 0.444286 1.4:-8500806 MS.gene015991:CDS
TCTTCTCATTGTCCAATAGC+TGG 0.447890 1.4:+8500880 None:intergenic
AGGCAACCGAGACTCAGTTT+TGG 0.448572 1.4:-8500827 MS.gene015991:CDS
TGCTAATAGACTTGTAATCC+AGG 0.468448 1.4:-8500715 MS.gene015991:CDS
TTCCGTTGATGGGATGAATA+TGG 0.470577 1.4:-8500796 MS.gene015991:CDS
ATGATCGAGAGGCATGTTAG+AGG 0.481598 1.4:+8500647 None:intergenic
TCTCGGTTGCCTTGCGCAAG+TGG 0.488530 1.4:+8500838 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1.4:+8500573 None:intergenic
GGGCTCAGATCAAAAGAATC+CGG 0.502950 1.4:+8500509 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506900 1.4:+8501010 None:intergenic
GCTGGAAATATTTGAGTTTG+CGG 0.509101 1.4:+8500612 None:intergenic
AGGTTTGAGTAGGAGCTCCC+TGG 0.512402 1.4:+8500697 None:intergenic
ACAGAGAGTGCAAAGCTCAC+TGG 0.525840 1.4:+8501094 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1.4:+8500574 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1.4:+8501011 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1.4:-8501018 MS.gene015991:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.4:-8501130 MS.gene015991:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1.4:-8500554 MS.gene015991:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.4:+8500561 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1.4:-8500528 MS.gene015991:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.4:-8501131 MS.gene015991:CDS
GCTCGCGCACGTTGGCACTA+CGG 0.576720 1.4:+8500928 None:intergenic
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.4:+8501041 None:intergenic
GGCCATATTCATCCCATCAA+CGG 0.588307 1.4:+8500794 None:intergenic
AGAGCTGAGCCACTTGCGCA+AGG 0.589828 1.4:-8500847 MS.gene015991:CDS
AGCCCACCAAAACTGAGTCT+CGG 0.598998 1.4:+8500821 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 1.4:-8501217 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 1.4:+8501015 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.601126 1.4:-8501221 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1.4:-8500553 MS.gene015991:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.4:+8501117 None:intergenic
GCTAATAGACTTGTAATCCA+GGG 0.618189 1.4:-8500714 MS.gene015991:CDS
GGATTTGGTTGATGATCGAG+AGG 0.624852 1.4:+8500636 None:intergenic
GGAAATATTTGAGTTTGCGG+AGG 0.627262 1.4:+8500615 None:intergenic
AGTGAGCTTTGCACTCTCTG+TGG 0.635156 1.4:-8501092 MS.gene015991:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 1.4:-8500552 MS.gene015991:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.4:-8500955 MS.gene015991:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.4:-8500975 MS.gene015991:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1.4:+8500950 None:intergenic
AATATTGAGCTCGCGCACGT+TGG 0.641144 1.4:+8500920 None:intergenic
CTCAGATCAAAAGAATCCGG+AGG 0.653378 1.4:+8500512 None:intergenic
TCAGATCAAAAGAATCCGGA+GGG 0.678771 1.4:+8500513 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 1.4:-8501206 MS.gene015991:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATTTCAATCTTT+TGG + chr1.4:8500550-8500569 None:intergenic 15.0%
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1.4:8500957-8500976 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+AGG + chr1.4:8501053-8501072 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr1.4:8501172-8501191 MS.gene015991:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr1.4:8501171-8501190 MS.gene015991:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.4:8500955-8500974 MS.gene015991:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.4:8500958-8500977 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1.4:8500961-8500980 MS.gene015991:CDS 25.0%
!!! TTTCCATTTTTTGTTGGAAA+TGG - chr1.4:8501052-8501071 MS.gene015991:CDS 25.0%
AAAAATGGAAAGGTTTGAGT+AGG + chr1.4:8501043-8501062 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr1.4:8501058-8501077 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG + chr1.4:8501169-8501188 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG - chr1.4:8501173-8501192 MS.gene015991:CDS 30.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1.4:8500964-8500983 MS.gene015991:CDS 30.0%
!!! CAAACCTTTCCATTTTTTGT+TGG - chr1.4:8501046-8501065 MS.gene015991:CDS 30.0%
AACAAATGAGGTTGCAACAT+AGG + chr1.4:8501157-8501176 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG + chr1.4:8501156-8501175 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + chr1.4:8500720-8500739 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - chr1.4:8501157-8501176 MS.gene015991:CDS 35.0%
GCTAATAGACTTGTAATCCA+GGG - chr1.4:8501013-8501032 MS.gene015991:CDS 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.4:8500719-8500738 None:intergenic 35.0%
TGCTAATAGACTTGTAATCC+AGG - chr1.4:8501012-8501031 MS.gene015991:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.4:8500766-8500785 None:intergenic 35.0%
! GCTGGAAATATTTGAGTTTG+CGG + chr1.4:8501118-8501137 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG - chr1.4:8501174-8501193 MS.gene015991:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.4:8500765-8500784 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+GGG - chr1.4:8501175-8501194 MS.gene015991:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG + chr1.4:8500689-8500708 None:intergenic 40.0%
TCTTCTCATTGTCCAATAGC+TGG + chr1.4:8500850-8500869 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.4:8500772-8500791 MS.gene015991:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.4:8501109-8501128 None:intergenic 40.0%
! GGAAATATTTGAGTTTGCGG+AGG + chr1.4:8501115-8501134 None:intergenic 40.0%
! TTCCGTTGATGGGATGAATA+TGG - chr1.4:8500931-8500950 MS.gene015991:CDS 40.0%
! TTTCAATCTTTTGGCGACCT+CGG + chr1.4:8500541-8500560 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG + chr1.4:8501136-8501155 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.4:8500764-8500783 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1.4:8500689-8500708 MS.gene015991:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.4:8500613-8500632 None:intergenic 45.0%
GACTCAGATCAACCAGCTAT+TGG - chr1.4:8500835-8500854 MS.gene015991:CDS 45.0%
GGCCATATTCATCCCATCAA+CGG + chr1.4:8500936-8500955 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1.4:8500780-8500799 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1.4:8500715-8500734 None:intergenic 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1.4:8500709-8500728 MS.gene015991:CDS 45.0%
! ATGATCGAGAGGCATGTTAG+AGG + chr1.4:8501083-8501102 None:intergenic 45.0%
!! AACCGAGACTCAGTTTTGGT+GGG - chr1.4:8500904-8500923 MS.gene015991:CDS 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.4:8500669-8500688 MS.gene015991:CDS 45.0%
!! GGATTTGGTTGATGATCGAG+AGG + chr1.4:8501094-8501113 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.4:8500670-8500689 MS.gene015991:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.4:8500761-8500780 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.4:8500760-8500779 None:intergenic 45.0%
AATATTGAGCTCGCGCACGT+TGG + chr1.4:8500810-8500829 None:intergenic 50.0%
AGCCCACCAAAACTGAGTCT+CGG + chr1.4:8500909-8500928 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCTG+TGG - chr1.4:8500635-8500654 MS.gene015991:CDS 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1.4:8501178-8501197 MS.gene015991:CDS 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG - chr1.4:8500521-8500540 MS.gene015991:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1.4:8501181-8501200 MS.gene015991:CDS 50.0%
! ACAGAGAGTGCAAAGCTCAC+TGG + chr1.4:8500636-8500655 None:intergenic 50.0%
! AGGCAACCGAGACTCAGTTT+TGG - chr1.4:8500900-8500919 MS.gene015991:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.4:8500676-8500695 MS.gene015991:CDS 50.0%
!! CAACCGAGACTCAGTTTTGG+TGG - chr1.4:8500903-8500922 MS.gene015991:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.4:8500668-8500687 MS.gene015991:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG - chr1.4:8501184-8501203 MS.gene015991:CDS 55.0%
AGGTTTGAGTAGGAGCTCCC+TGG + chr1.4:8501033-8501052 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.4:8500752-8500771 MS.gene015991:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.4:8500596-8500615 MS.gene015991:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.4:8500597-8500616 MS.gene015991:CDS 55.0%
!! GAGACTCAGTTTTGGTGGGC+TGG - chr1.4:8500908-8500927 MS.gene015991:CDS 55.0%
AGAGCTGAGCCACTTGCGCA+AGG - chr1.4:8500880-8500899 MS.gene015991:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - chr1.4:8501190-8501209 MS.gene015991:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr1.4:8501199-8501218 MS.gene015991:CDS 60.0%
TCTCGGTTGCCTTGCGCAAG+TGG + chr1.4:8500892-8500911 None:intergenic 60.0%
!! GGTGGGCTGGTTCCGTTGAT+GGG - chr1.4:8500921-8500940 MS.gene015991:CDS 60.0%
!! TGGTGGGCTGGTTCCGTTGA+TGG - chr1.4:8500920-8500939 MS.gene015991:CDS 60.0%
GCTCGCGCACGTTGGCACTA+CGG + chr1.4:8500802-8500821 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 8500518 8501231 8500518 ID=MS.gene015991
chr1.4 mRNA 8500518 8501231 8500518 ID=MS.gene015991.t1;Parent=MS.gene015991
chr1.4 exon 8500518 8501231 8500518 ID=MS.gene015991.t1.exon1;Parent=MS.gene015991.t1
chr1.4 CDS 8500518 8501231 8500518 ID=cds.MS.gene015991.t1;Parent=MS.gene015991.t1
Gene Sequence

>MS.gene015991

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAAATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACGCGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAGTTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTGCACATCATGCTAATAGACTTGTAATCCAGGGAGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCGATCATCAACCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene015991.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKRAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVAHHANRLVIQGAPTQTFPFFVGNGSSSNMPLDHQPNPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF