AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016378

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016378.t1 MTR_8g043650 93.249 237 16 0 1 237 1 237 6.24e-166 457
MS.gene016378.t1 MTR_1g105910 91.561 237 20 0 1 237 1 237 2.37e-154 428
MS.gene016378.t1 MTR_1g105920 89.954 219 22 0 1 219 1 219 9.06e-149 414
MS.gene016378.t1 MTR_2g030740 87.764 237 29 0 1 237 1 237 3.90e-145 405
MS.gene016378.t1 MTR_1g012570 89.030 237 26 0 1 237 1 237 2.48e-144 403
MS.gene016378.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 7.21e-141 394
MS.gene016378.t1 MTR_1g105905 83.636 220 36 0 18 237 1 220 1.88e-136 382
MS.gene016378.t1 MTR_3g052870 78.995 219 27 1 1 219 1 200 2.45e-122 347
MS.gene016378.t1 MTR_0121s0080 71.730 237 66 1 1 237 1 236 1.17e-120 343
MS.gene016378.t1 MTR_5g055100 66.667 237 79 0 1 237 1 237 1.59e-117 335
MS.gene016378.t1 MTR_3g030770 72.340 235 47 3 1 225 1 227 1.73e-117 335
MS.gene016378.t1 MTR_2g085280 66.949 236 78 0 1 236 1 236 2.42e-117 335
MS.gene016378.t1 MTR_2g085250 66.949 236 78 0 1 236 1 236 5.61e-117 333
MS.gene016378.t1 MTR_1g108510 72.340 235 47 3 1 225 1 227 1.41e-116 332
MS.gene016378.t1 MTR_1g106070 86.264 182 25 0 1 182 1 182 2.59e-116 330
MS.gene016378.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 5.68e-114 326
MS.gene016378.t1 MTR_2g093190 71.064 235 50 3 1 225 1 227 6.02e-113 323
MS.gene016378.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 1.13e-112 323
MS.gene016378.t1 MTR_5g045560 68.776 237 74 0 1 237 1 237 3.08e-111 319
MS.gene016378.t1 MTR_1g108580 69.787 235 53 3 1 225 1 227 4.65e-111 318
MS.gene016378.t1 MTR_5g053390 66.667 225 75 0 1 225 1 225 1.28e-107 310
MS.gene016378.t1 MTR_7g062350 65.919 223 74 2 16 237 27 248 4.58e-100 291
MS.gene016378.t1 MTR_1g075570 62.360 178 53 1 18 195 1 164 1.59e-68 208
MS.gene016378.t1 MTR_0121s0100 77.344 128 29 0 1 128 1 128 9.45e-67 202
MS.gene016378.t1 MTR_3g030780 71.970 132 37 0 1 132 1 132 1.97e-62 191
MS.gene016378.t1 MTR_3g080940 50.811 185 81 1 7 191 7 181 4.46e-62 193
MS.gene016378.t1 MTR_3g067910 66.667 102 34 0 21 122 2 103 7.40e-44 143
MS.gene016378.t1 MTR_2g105290 39.181 171 94 2 5 172 8 171 4.04e-39 134
MS.gene016378.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 8.76e-39 133
MS.gene016378.t1 MTR_7g028448 43.871 155 75 3 5 159 8 150 1.41e-32 116
MS.gene016378.t1 MTR_4g036915 43.871 155 75 3 5 159 8 150 1.41e-32 116
MS.gene016378.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 8.95e-30 110
MS.gene016378.t1 MTR_1g108500 57.522 113 25 2 8 118 94 185 9.07e-30 113
MS.gene016378.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 5.70e-27 99.4
MS.gene016378.t1 MTR_3g067915 48.936 94 48 0 33 126 3 96 2.99e-23 90.5
MS.gene016378.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.49e-22 90.5
MS.gene016378.t1 MTR_1g047550 59.420 69 28 0 9 77 2 70 7.47e-22 89.4
MS.gene016378.t1 MTR_8g079502 59.420 69 28 0 9 77 2 70 1.41e-21 88.6
MS.gene016378.t1 MTR_4g131030 38.793 116 56 2 9 109 2 117 4.97e-21 87.8
MS.gene016378.t1 MTR_1g054265 44.554 101 54 1 9 109 2 100 6.99e-21 86.3
MS.gene016378.t1 MTR_1g063160 44.643 112 57 3 9 118 2 110 7.16e-21 86.7
MS.gene016378.t1 MTR_8g051580 44.554 101 54 1 9 109 2 100 1.23e-20 86.3
MS.gene016378.t1 MTR_8g046350 44.330 97 49 1 9 105 2 93 2.04e-19 82.4
MS.gene016378.t1 MTR_4g094632 40.566 106 61 1 9 114 2 105 1.69e-18 79.7
MS.gene016378.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 1.16e-17 79.7
MS.gene016378.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.27e-17 79.3
MS.gene016378.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.48e-17 77.4
MS.gene016378.t1 MTR_1g053070 33.333 165 95 3 9 172 2 152 3.00e-17 78.6
MS.gene016378.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 3.65e-17 77.4
MS.gene016378.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 7.83e-17 77.0
MS.gene016378.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.71e-16 75.9
MS.gene016378.t1 MTR_3g102570 32.530 166 98 5 9 162 2 165 4.34e-16 76.3
MS.gene016378.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.56e-16 75.1
MS.gene016378.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 5.97e-16 74.7
MS.gene016378.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 6.49e-16 74.3
MS.gene016378.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 6.90e-16 74.7
MS.gene016378.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 7.49e-16 74.3
MS.gene016378.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 7.77e-16 73.6
MS.gene016378.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 9.66e-16 74.7
MS.gene016378.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.27e-15 73.9
MS.gene016378.t1 MTR_8g022970 32.468 154 91 3 8 155 17 163 2.20e-15 72.0
MS.gene016378.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 2.49e-15 72.0
MS.gene016378.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 2.56e-15 72.4
MS.gene016378.t1 MTR_4g109810 32.099 243 126 14 9 230 2 226 3.07e-15 72.8
MS.gene016378.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.49e-15 73.2
MS.gene016378.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.05e-15 72.4
MS.gene016378.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.35e-15 72.4
MS.gene016378.t1 MTR_4g084740 46.053 76 39 2 9 83 2 76 1.25e-14 72.4
MS.gene016378.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.45e-14 70.9
MS.gene016378.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.27e-14 70.1
MS.gene016378.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 2.29e-14 70.9
MS.gene016378.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.33e-14 70.1
MS.gene016378.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.43e-14 70.5
MS.gene016378.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 3.36e-14 67.0
MS.gene016378.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 4.54e-14 65.5
MS.gene016378.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 6.48e-14 68.9
MS.gene016378.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.79e-13 68.2
MS.gene016378.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.15e-13 67.8
MS.gene016378.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 2.25e-13 67.8
MS.gene016378.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.36e-13 67.8
MS.gene016378.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.96e-13 67.4
MS.gene016378.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 3.10e-13 67.0
MS.gene016378.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 5.55e-13 66.6
MS.gene016378.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 6.83e-13 66.6
MS.gene016378.t1 MTR_4g051538 32.500 160 96 3 5 164 5 152 7.16e-13 66.2
MS.gene016378.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 7.67e-13 66.2
MS.gene016378.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 8.78e-13 65.1
MS.gene016378.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.28e-12 61.2
MS.gene016378.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 4.59e-12 63.2
MS.gene016378.t1 MTR_3g113030 46.032 63 34 0 9 71 2 64 5.86e-12 63.5
MS.gene016378.t1 MTR_3g109930 30.000 140 82 3 27 159 20 150 5.89e-12 62.8
MS.gene016378.t1 MTR_4g093030 39.286 84 35 1 9 76 2 85 1.90e-11 60.8
MS.gene016378.t1 MTR_4g108720 27.841 176 105 9 9 172 2 167 3.06e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016378.t1 AT5G60440 53.723 188 80 3 5 189 3 186 3.01e-60 192
MS.gene016378.t1 AT2G24840 47.561 164 75 4 6 163 60 218 2.48e-41 142
MS.gene016378.t1 AT4G36590 46.296 162 81 2 5 160 3 164 4.56e-39 135
MS.gene016378.t1 AT1G01530 40.609 197 95 5 4 192 2 184 3.55e-38 133
MS.gene016378.t1 AT1G65360 38.222 225 128 6 5 225 3 220 3.86e-38 132
MS.gene016378.t1 AT2G34440 45.299 117 55 2 9 121 2 113 7.14e-26 99.8
MS.gene016378.t1 AT3G66656 41.732 127 70 1 9 131 2 128 3.83e-25 97.8
MS.gene016378.t1 AT3G04100 31.579 152 100 3 2 149 7 158 3.02e-22 90.9
MS.gene016378.t1 AT1G72350 35.374 147 62 4 9 155 43 156 3.09e-20 86.3
MS.gene016378.t1 AT1G28460 30.636 173 110 4 5 174 4 169 2.27e-18 80.1
MS.gene016378.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.22e-18 80.5
MS.gene016378.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.94e-18 80.5
MS.gene016378.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.09e-18 80.5
MS.gene016378.t1 AT4G22950 50.000 76 38 0 10 85 3 78 5.21e-18 79.0
MS.gene016378.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.50e-18 80.5
MS.gene016378.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.68e-18 80.5
MS.gene016378.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.10e-17 79.7
MS.gene016378.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.08e-17 78.6
MS.gene016378.t1 AT4G22950 50.000 76 38 0 10 85 3 78 2.08e-17 78.6
MS.gene016378.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.40e-17 80.1
MS.gene016378.t1 AT1G29962 29.070 172 115 4 5 169 4 175 6.01e-17 76.3
MS.gene016378.t1 AT4G18960 42.308 104 49 2 5 108 15 107 1.45e-16 76.6
MS.gene016378.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.32e-16 75.9
MS.gene016378.t1 AT2G22540 51.471 68 33 0 9 76 2 69 2.32e-16 75.9
MS.gene016378.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.52e-16 73.9
MS.gene016378.t1 AT2G42830 50.704 71 35 0 6 76 14 84 6.12e-16 75.1
MS.gene016378.t1 AT3G61120 51.471 68 33 0 9 76 2 69 6.38e-16 74.7
MS.gene016378.t1 AT2G45660 50.000 68 34 0 10 77 3 70 6.66e-16 74.3
MS.gene016378.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.67e-16 72.8
MS.gene016378.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.69e-16 74.7
MS.gene016378.t1 AT2G42830 47.368 76 40 0 1 76 9 84 6.89e-16 74.7
MS.gene016378.t1 AT3G58780 50.704 71 35 0 6 76 20 90 7.49e-16 74.7
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.13e-16 71.2
MS.gene016378.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.11e-15 74.7
MS.gene016378.t1 AT1G22130 36.190 105 66 1 9 112 2 106 1.49e-15 75.1
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.81e-15 71.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.81e-15 71.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.81e-15 71.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.81e-15 71.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.81e-15 71.6
MS.gene016378.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.12e-15 73.6
MS.gene016378.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.12e-15 73.6
MS.gene016378.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.12e-15 73.6
MS.gene016378.t1 AT1G77950 46.053 76 39 2 9 83 2 76 2.12e-15 73.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.36e-15 71.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.36e-15 71.6
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.36e-15 71.6
MS.gene016378.t1 AT4G24540 35.075 134 75 4 9 132 2 133 2.40e-15 72.8
MS.gene016378.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.48e-15 73.2
MS.gene016378.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.48e-15 73.2
MS.gene016378.t1 AT1G77980 37.143 105 65 1 9 112 2 106 2.75e-15 74.3
MS.gene016378.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.35e-15 72.4
MS.gene016378.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.86e-15 71.2
MS.gene016378.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.86e-15 71.2
MS.gene016378.t1 AT5G51870 50.746 67 33 0 10 76 3 69 5.14e-15 70.9
MS.gene016378.t1 AT1G69120 40.659 91 51 1 9 99 2 89 5.57e-15 72.0
MS.gene016378.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.73e-15 72.0
MS.gene016378.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.73e-15 72.0
MS.gene016378.t1 AT3G57390 48.529 68 35 0 9 76 2 69 6.40e-15 72.4
MS.gene016378.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.57e-15 72.0
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.90e-15 71.2
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.90e-15 71.2
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.03e-15 71.2
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.03e-15 71.2
MS.gene016378.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.03e-15 71.2
MS.gene016378.t1 AT5G51870 50.746 67 33 0 10 76 3 69 8.71e-15 71.2
MS.gene016378.t1 AT5G13790 41.935 93 45 1 9 101 2 85 9.07e-15 72.0
MS.gene016378.t1 AT5G51870 47.222 72 38 0 5 76 21 92 9.30e-15 70.9
MS.gene016378.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.55e-15 71.6
MS.gene016378.t1 AT5G13790 50.000 68 34 0 9 76 2 69 9.78e-15 72.0
MS.gene016378.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.78e-15 71.2
MS.gene016378.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.78e-15 71.2
MS.gene016378.t1 AT1G17310 50.633 79 37 1 8 86 47 123 9.86e-15 71.2
MS.gene016378.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.10e-14 71.6
MS.gene016378.t1 AT1G17310 50.633 79 37 1 8 86 58 134 1.25e-14 70.9
MS.gene016378.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.44e-14 70.5
MS.gene016378.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.56e-14 70.5
MS.gene016378.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.60e-14 70.5
MS.gene016378.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.74e-14 70.5
MS.gene016378.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.10e-14 69.3
MS.gene016378.t1 AT3G30260 28.485 165 100 4 9 172 2 149 2.19e-14 70.9
MS.gene016378.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.20e-14 70.1
MS.gene016378.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.34e-14 69.3
MS.gene016378.t1 AT1G28450 29.371 143 95 3 5 141 4 146 2.61e-14 69.3
MS.gene016378.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.78e-14 70.1
MS.gene016378.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.79e-14 69.3
MS.gene016378.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.28e-14 69.3
MS.gene016378.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.61e-14 68.9
MS.gene016378.t1 AT2G22540 50.000 68 29 1 9 76 2 64 7.06e-14 68.9
MS.gene016378.t1 AT2G14210 46.377 69 36 1 9 76 2 70 8.59e-14 68.9
MS.gene016378.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.02e-13 68.6
MS.gene016378.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.45e-13 67.8
MS.gene016378.t1 AT3G54340 47.619 63 33 0 9 71 2 64 1.49e-13 68.2
MS.gene016378.t1 AT5G20240 48.387 62 32 0 9 70 2 63 1.90e-13 66.2
MS.gene016378.t1 AT1G24260 29.046 241 135 11 9 234 2 221 2.45e-13 67.8
MS.gene016378.t1 AT5G23260 42.268 97 48 3 2 90 9 105 2.47e-13 68.2
MS.gene016378.t1 AT5G23260 43.617 94 45 3 5 90 12 105 2.83e-13 67.8
MS.gene016378.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.27e-13 67.4
MS.gene016378.t1 AT5G15800 46.377 69 36 1 9 76 2 70 3.28e-13 67.4
MS.gene016378.t1 AT5G15800 46.377 69 36 1 9 76 2 70 4.24e-13 67.4
MS.gene016378.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.30e-13 67.0
MS.gene016378.t1 AT3G58780 51.667 60 29 0 6 65 14 73 4.50e-13 67.0
MS.gene016378.t1 AT1G24260 27.165 254 137 11 9 234 2 235 4.54e-13 67.0
MS.gene016378.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.73e-13 67.0
MS.gene016378.t1 AT5G20240 48.387 62 32 0 9 70 2 63 5.88e-13 66.2
MS.gene016378.t1 AT3G58780 51.667 60 29 0 6 65 14 73 5.93e-13 67.0
MS.gene016378.t1 AT1G24260 46.377 69 36 1 9 76 2 70 9.82e-13 66.2
MS.gene016378.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.30e-12 64.7
MS.gene016378.t1 AT1G47760 34.483 116 61 3 9 123 2 103 2.04e-12 64.3
MS.gene016378.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.22e-12 64.7
MS.gene016378.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.52e-12 64.7
MS.gene016378.t1 AT5G65050 43.478 69 38 1 9 76 2 70 7.56e-12 62.4
MS.gene016378.t1 AT5G65070 40.580 69 40 1 9 76 2 70 8.68e-12 61.6
MS.gene016378.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.01e-11 62.4
MS.gene016378.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.09e-11 62.0
MS.gene016378.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.12e-11 62.4
MS.gene016378.t1 AT1G71692 41.429 70 40 1 9 77 2 71 1.61e-11 62.0
MS.gene016378.t1 AT1G46408 36.134 119 67 4 10 119 5 123 1.93e-11 62.8
MS.gene016378.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.08e-11 61.2
MS.gene016378.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.14e-11 61.6
MS.gene016378.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.17e-11 61.6
MS.gene016378.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.59e-11 61.2
MS.gene016378.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.13e-11 61.2
MS.gene016378.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.53e-11 61.6

Find 55 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 8.2:+57413894 MS.gene016378:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8.2:-57413829 None:intergenic
TCTTCTCCATGTCCAGTAAC+TGG 0.302941 8.2:-57413570 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 8.2:+57413643 MS.gene016378:CDS
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8.2:+57413623 MS.gene016378:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 8.2:-57413486 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 8.2:+57413895 MS.gene016378:CDS
ATGTTGCAATCTCATTTGTT+TGG 0.363366 8.2:+57413880 MS.gene016378:CDS
GACTCAGATCAACCAGTTAC+TGG 0.372422 8.2:+57413558 MS.gene016378:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 8.2:+57413735 MS.gene016378:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 8.2:+57413653 MS.gene016378:CDS
TTTGGATGAGACTAAGAAAC+TGG 0.433965 8.2:+57413702 MS.gene016378:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8.2:-57413819 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 8.2:+57413644 MS.gene016378:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 8.2:+57413654 MS.gene016378:CDS
TGGTTGCACATCATGCTGAT+AGG 0.453644 8.2:+57413722 MS.gene016378:CDS
CCTCGGTCGCCTTGCGCAAG+TGG 0.465805 8.2:-57413612 None:intergenic
CTCTATGACCGTATCAACAT+TGG 0.477809 8.2:-57413440 None:intergenic
AACAAATGAGATTGCAACAT+AGG 0.480998 8.2:-57413877 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 8.2:-57413655 None:intergenic
GGAGGTGGATATGGACCCTC+TGG 0.496777 8.2:+57413922 MS.gene016378:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8.2:-57413803 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 8.2:-57413530 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.508183 8.2:-57413838 None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8.2:-57413356 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 8.2:-57413656 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8.2:-57413439 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 8.2:+57413432 MS.gene016378:CDS
CCACTTGCGCAAGGCGACCG+AGG 0.551221 8.2:+57413612 MS.gene016378:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 8.2:-57413522 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8.2:+57413320 MS.gene016378:CDS
ACAAATGAGATTGCAACATA+GGG 0.555620 8.2:-57413876 None:intergenic
TGTTTGGTTTCAACAATATG+GGG 0.556331 8.2:+57413896 MS.gene016378:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8.2:+57413233 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8.2:+57413319 MS.gene016378:CDS
GATCAACCAGTTACTGGACA+TGG 0.586550 8.2:+57413564 MS.gene016378:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8.2:-57413409 None:intergenic
AGCCCACCAAAATTGAGCCT+CGG 0.589062 8.2:-57413629 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8.2:-57413435 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 8.2:-57413753 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 8.2:+57413897 MS.gene016378:CDS
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8.2:+57413358 MS.gene016378:CDS
AGAGCTGAACCACTTGCGCA+AGG 0.610527 8.2:+57413603 MS.gene016378:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8.2:-57413333 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8.2:-57413814 None:intergenic
TGTGATTCAACCATGTCGAG+TGG 0.620546 8.2:+57413229 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 8.2:+57413736 MS.gene016378:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 8.2:+57413898 MS.gene016378:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 8.2:+57413495 MS.gene016378:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 8.2:+57413475 MS.gene016378:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8.2:-57413500 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8.2:-57413835 None:intergenic
TCGGATCAAAAGAATCCAGA+GGG 0.678771 8.2:-57413937 None:intergenic
CTCGGATCAAAAGAATCCAG+AGG 0.678961 8.2:-57413938 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8.2:+57413244 MS.gene016378:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8.2:57413680-57413699 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8.2:57413273-57413292 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8.2:57413776-57413795 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr8.2:57413895-57413914 MS.gene016378:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr8.2:57413894-57413913 MS.gene016378:CDS 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8.2:57413775-57413794 MS.gene016378:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8.2:57413678-57413697 MS.gene016378:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8.2:57413681-57413700 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8.2:57413684-57413703 MS.gene016378:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8.2:57413766-57413785 None:intergenic 30.0%
AACAAATGAGATTGCAACAT+AGG - chr8.2:57413880-57413899 None:intergenic 30.0%
ACAAATGAGATTGCAACATA+GGG - chr8.2:57413879-57413898 None:intergenic 30.0%
ATGTTGCAATCTCATTTGTT+TGG + chr8.2:57413880-57413899 MS.gene016378:CDS 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8.2:57413781-57413800 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG + chr8.2:57413896-57413915 MS.gene016378:CDS 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8.2:57413769-57413788 MS.gene016378:CDS 30.0%
GGGTTATGAAAAAATTGTGC+TGG - chr8.2:57413859-57413878 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG - chr8.2:57413442-57413461 None:intergenic 35.0%
TTTGGATGAGACTAAGAAAC+TGG + chr8.2:57413702-57413721 MS.gene016378:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr8.2:57413489-57413508 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG + chr8.2:57413897-57413916 MS.gene016378:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr8.2:57413488-57413507 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+GGG + chr8.2:57413898-57413917 MS.gene016378:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8.2:57413412-57413431 None:intergenic 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8.2:57413443-57413462 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr8.2:57413495-57413514 MS.gene016378:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr8.2:57413832-57413851 None:intergenic 40.0%
! GCTGGAAACATTTGAGTTTG+CGG - chr8.2:57413841-57413860 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr8.2:57413487-57413506 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8.2:57413412-57413431 MS.gene016378:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8.2:57413336-57413355 None:intergenic 45.0%
GACTCAGATCAACCAGTTAC+TGG + chr8.2:57413558-57413577 MS.gene016378:CDS 45.0%
GATCAACCAGTTACTGGACA+TGG + chr8.2:57413564-57413583 MS.gene016378:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr8.2:57413736-57413755 MS.gene016378:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr8.2:57413503-57413522 None:intergenic 45.0%
TCTTCTCCATGTCCAGTAAC+TGG - chr8.2:57413573-57413592 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8.2:57413438-57413457 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr8.2:57413735-57413754 MS.gene016378:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8.2:57413432-57413451 MS.gene016378:CDS 45.0%
TGGTTGCACATCATGCTGAT+AGG + chr8.2:57413722-57413741 MS.gene016378:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8.2:57413806-57413825 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - chr8.2:57413838-57413857 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8.2:57413654-57413673 MS.gene016378:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8.2:57413264-57413283 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr8.2:57413392-57413411 MS.gene016378:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8.2:57413817-57413836 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr8.2:57413393-57413412 MS.gene016378:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr8.2:57413484-57413503 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr8.2:57413483-57413502 None:intergenic 45.0%
AGCCCACCAAAATTGAGCCT+CGG - chr8.2:57413632-57413651 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCAG+TGG + chr8.2:57413358-57413377 MS.gene016378:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8.2:57413658-57413677 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8.2:57413659-57413678 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG + chr8.2:57413901-57413920 MS.gene016378:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr8.2:57413904-57413923 MS.gene016378:CDS 50.0%
! ACTGAGAGTGCAAAGCTCAC+TGG - chr8.2:57413359-57413378 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG - chr8.2:57413533-57413552 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8.2:57413653-57413672 MS.gene016378:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8.2:57413399-57413418 MS.gene016378:CDS 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8.2:57413627-57413646 MS.gene016378:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - chr8.2:57413822-57413841 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr8.2:57413391-57413410 MS.gene016378:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr8.2:57413907-57413926 MS.gene016378:CDS 55.0%
AGAGCTGAACCACTTGCGCA+AGG + chr8.2:57413603-57413622 MS.gene016378:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG + chr8.2:57413475-57413494 MS.gene016378:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8.2:57413244-57413263 MS.gene016378:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8.2:57413623-57413642 MS.gene016378:CDS 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8.2:57413626-57413645 MS.gene016378:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8.2:57413319-57413338 MS.gene016378:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8.2:57413320-57413339 MS.gene016378:CDS 55.0%
!! GAGGCTCAATTTTGGTGGGC+TGG + chr8.2:57413631-57413650 MS.gene016378:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8.2:57413756-57413775 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr8.2:57413913-57413932 MS.gene016378:CDS 60.0%
GGAGGTGGATATGGACCCTC+TGG + chr8.2:57413922-57413941 MS.gene016378:CDS 60.0%
GCTCGCGCACATTGGCGCTA+CGG - chr8.2:57413525-57413544 None:intergenic 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG + chr8.2:57413644-57413663 MS.gene016378:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG + chr8.2:57413643-57413662 MS.gene016378:CDS 65.0%
CCACTTGCGCAAGGCGACCG+AGG + chr8.2:57413612-57413631 MS.gene016378:CDS 70.0%
CCTCGGTCGCCTTGCGCAAG+TGG - chr8.2:57413615-57413634 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 57413241 57413954 57413241 ID=MS.gene016378
chr8.2 mRNA 57413241 57413954 57413241 ID=MS.gene016378.t1;Parent=MS.gene016378
chr8.2 exon 57413241 57413954 57413241 ID=MS.gene016378.t1.exon1;Parent=MS.gene016378.t1
chr8.2 CDS 57413241 57413954 57413241 ID=cds.MS.gene016378.t1;Parent=MS.gene016378.t1
Gene Sequence

>MS.gene016378

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGTTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAACCACTTGCGCAAGGCGACCGAGGCTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGATGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAATTTTTTCATAACCCTATGTTGCAATCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCTGGATTCTTTTGA
Protein sequence

>MS.gene016378.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALVVFSPGEKVFSFGQPNVDTVIERYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELNHLRKATEAQFWWAGPVDGMNRAQLEFFKKALDETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFHNPMLQSHLFGFNNMGGGGGYGPSGFF