AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene016387

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016387.t1 MTR_8g043650 92.827 237 17 0 1 237 1 237 1.66e-164 454
MS.gene016387.t1 MTR_1g105910 91.111 225 20 0 1 225 1 225 1.30e-152 424
MS.gene016387.t1 MTR_1g105920 89.912 228 23 0 1 228 1 228 1.42e-145 406
MS.gene016387.t1 MTR_1g012570 89.030 237 26 0 1 237 1 237 3.94e-144 402
MS.gene016387.t1 MTR_2g030740 87.342 237 30 0 1 237 1 237 1.02e-143 401
MS.gene016387.t1 MTR_3g052920 84.932 219 33 0 1 219 1 219 2.11e-139 390
MS.gene016387.t1 MTR_1g105905 83.182 220 37 0 18 237 1 220 4.46e-135 379
MS.gene016387.t1 MTR_3g052870 78.995 219 27 1 1 219 1 200 9.54e-122 345
MS.gene016387.t1 MTR_0121s0080 70.886 237 68 1 1 237 1 236 2.22e-118 337
MS.gene016387.t1 MTR_3g030770 72.340 235 47 3 1 225 1 227 6.09e-117 333
MS.gene016387.t1 MTR_5g055100 66.667 237 79 0 1 237 1 237 6.54e-117 333
MS.gene016387.t1 MTR_1g108510 72.340 235 47 3 1 225 1 227 2.79e-116 332
MS.gene016387.t1 MTR_1g106070 85.714 182 26 0 1 182 1 182 4.58e-115 327
MS.gene016387.t1 MTR_2g085280 66.102 236 80 0 1 236 1 236 6.23e-115 328
MS.gene016387.t1 MTR_2g085250 66.102 236 80 0 1 236 1 236 1.42e-114 327
MS.gene016387.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 2.02e-113 325
MS.gene016387.t1 MTR_2g093190 71.064 235 50 3 1 225 1 227 2.52e-112 322
MS.gene016387.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 3.37e-112 322
MS.gene016387.t1 MTR_5g045560 69.198 237 73 0 1 237 1 237 5.52e-112 321
MS.gene016387.t1 MTR_1g108580 70.213 235 52 3 1 225 1 227 7.97e-112 320
MS.gene016387.t1 MTR_5g053390 66.667 225 75 0 1 225 1 225 4.03e-107 308
MS.gene016387.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 1.92e-99 290
MS.gene016387.t1 MTR_1g075570 61.798 178 54 1 18 195 1 164 1.96e-67 205
MS.gene016387.t1 MTR_0121s0100 76.562 128 30 0 1 128 1 128 2.95e-65 199
MS.gene016387.t1 MTR_3g080940 50.811 185 81 1 7 191 7 181 3.68e-61 191
MS.gene016387.t1 MTR_3g030780 71.212 132 38 0 1 132 1 132 5.38e-61 188
MS.gene016387.t1 MTR_3g067910 66.667 102 34 0 21 122 2 103 9.50e-44 143
MS.gene016387.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 3.67e-39 134
MS.gene016387.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 4.68e-39 133
MS.gene016387.t1 MTR_7g028448 43.871 155 75 3 5 159 8 150 1.59e-32 116
MS.gene016387.t1 MTR_4g036915 43.871 155 75 3 5 159 8 150 1.59e-32 116
MS.gene016387.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 7.00e-30 110
MS.gene016387.t1 MTR_1g108500 57.522 113 25 2 8 118 94 185 8.79e-30 114
MS.gene016387.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 4.96e-27 99.4
MS.gene016387.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.43e-22 90.5
MS.gene016387.t1 MTR_1g047550 59.420 69 28 0 9 77 2 70 4.96e-22 89.7
MS.gene016387.t1 MTR_8g079502 59.420 69 28 0 9 77 2 70 1.04e-21 89.0
MS.gene016387.t1 MTR_3g067915 47.872 94 49 0 33 126 3 96 1.24e-21 86.3
MS.gene016387.t1 MTR_4g131030 38.793 116 56 2 9 109 2 117 2.49e-21 89.0
MS.gene016387.t1 MTR_8g051580 44.554 101 54 1 9 109 2 100 3.52e-21 87.4
MS.gene016387.t1 MTR_1g054265 44.554 101 54 1 9 109 2 100 4.64e-21 87.0
MS.gene016387.t1 MTR_1g063160 42.342 111 61 2 9 118 2 110 1.24e-20 85.9
MS.gene016387.t1 MTR_8g046350 33.125 160 99 2 9 165 2 156 1.40e-19 82.8
MS.gene016387.t1 MTR_4g094632 40.566 106 61 1 9 114 2 105 9.11e-19 80.5
MS.gene016387.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.32e-17 77.8
MS.gene016387.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.56e-17 79.0
MS.gene016387.t1 MTR_1g053070 33.333 165 95 3 9 172 2 152 1.96e-17 79.0
MS.gene016387.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 2.39e-17 78.6
MS.gene016387.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 4.08e-17 77.4
MS.gene016387.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 7.91e-17 77.0
MS.gene016387.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.58e-16 75.9
MS.gene016387.t1 MTR_3g102570 32.530 166 98 5 9 162 2 165 3.60e-16 76.6
MS.gene016387.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 4.40e-16 75.1
MS.gene016387.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 4.84e-16 74.7
MS.gene016387.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.45e-16 75.1
MS.gene016387.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 6.29e-16 74.3
MS.gene016387.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 7.12e-16 74.7
MS.gene016387.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 7.77e-16 73.6
MS.gene016387.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.23e-15 73.9
MS.gene016387.t1 MTR_2g017865 40.385 104 61 1 9 112 17 119 1.39e-15 74.3
MS.gene016387.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 2.16e-15 72.4
MS.gene016387.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 3.51e-15 72.0
MS.gene016387.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.75e-15 73.2
MS.gene016387.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.49e-15 72.0
MS.gene016387.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.72e-15 72.0
MS.gene016387.t1 MTR_4g084740 46.053 76 39 2 9 83 2 76 1.08e-14 72.4
MS.gene016387.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.21e-14 71.2
MS.gene016387.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.16e-14 70.1
MS.gene016387.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 2.17e-14 70.9
MS.gene016387.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.20e-14 70.5
MS.gene016387.t1 MTR_5g046790 43.590 78 39 2 9 86 2 74 2.28e-14 70.1
MS.gene016387.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 3.25e-14 67.4
MS.gene016387.t1 MTR_8g022970 31.818 154 92 3 8 155 17 163 4.42e-14 68.6
MS.gene016387.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 5.94e-14 65.1
MS.gene016387.t1 MTR_4g109810 31.120 241 131 12 9 230 2 226 8.93e-14 68.9
MS.gene016387.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 9.13e-14 68.2
MS.gene016387.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.70e-13 68.2
MS.gene016387.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 2.12e-13 67.8
MS.gene016387.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.21e-13 67.8
MS.gene016387.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.28e-13 67.4
MS.gene016387.t1 MTR_4g051538 32.317 164 99 3 1 164 1 152 2.39e-13 67.4
MS.gene016387.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.78e-13 67.4
MS.gene016387.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.79e-13 67.4
MS.gene016387.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 6.37e-13 66.6
MS.gene016387.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 6.83e-13 66.6
MS.gene016387.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 7.59e-13 66.2
MS.gene016387.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 8.09e-13 65.1
MS.gene016387.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.95e-12 60.8
MS.gene016387.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 4.41e-12 63.2
MS.gene016387.t1 MTR_3g113030 46.032 63 34 0 9 71 2 64 5.91e-12 63.5
MS.gene016387.t1 MTR_4g108720 27.429 175 107 8 9 172 2 167 5.09e-11 62.0
MS.gene016387.t1 MTR_3g109930 30.935 139 82 4 27 159 20 150 9.54e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene016387.t1 AT5G60440 54.497 189 77 4 5 189 3 186 1.70e-59 190
MS.gene016387.t1 AT2G24840 47.561 164 75 4 6 163 60 218 1.70e-41 142
MS.gene016387.t1 AT4G36590 46.914 162 80 2 5 160 3 164 1.32e-40 140
MS.gene016387.t1 AT1G65360 39.035 228 122 8 5 225 3 220 8.22e-39 134
MS.gene016387.t1 AT1G01530 40.609 197 95 5 4 192 2 184 2.26e-38 134
MS.gene016387.t1 AT2G34440 45.299 117 55 2 9 121 2 113 5.59e-26 99.8
MS.gene016387.t1 AT3G66656 41.732 127 70 1 9 131 2 128 3.17e-25 98.2
MS.gene016387.t1 AT3G04100 30.263 152 102 2 2 149 7 158 2.45e-22 91.3
MS.gene016387.t1 AT1G72350 35.374 147 62 4 9 155 43 156 1.46e-20 87.0
MS.gene016387.t1 AT1G28460 30.058 173 111 3 5 174 4 169 2.04e-18 80.1
MS.gene016387.t1 AT4G22950 50.000 76 38 0 10 85 3 78 4.14e-18 79.3
MS.gene016387.t1 AT4G09960 46.512 86 45 1 9 93 2 87 5.12e-18 80.1
MS.gene016387.t1 AT4G09960 46.512 86 45 1 9 93 2 87 5.88e-18 80.1
MS.gene016387.t1 AT4G09960 46.512 86 45 1 9 93 3 88 6.49e-18 80.1
MS.gene016387.t1 AT4G09960 46.512 86 45 1 9 93 12 97 8.71e-18 79.7
MS.gene016387.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.05e-17 79.7
MS.gene016387.t1 AT4G09960 46.512 86 45 1 9 93 28 113 1.30e-17 79.7
MS.gene016387.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.45e-17 79.0
MS.gene016387.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.45e-17 79.0
MS.gene016387.t1 AT4G09960 46.512 86 45 1 9 93 97 182 3.33e-17 79.7
MS.gene016387.t1 AT1G29962 29.070 172 115 4 5 169 4 175 4.69e-17 76.6
MS.gene016387.t1 AT4G18960 42.308 104 49 2 5 108 15 107 1.31e-16 77.0
MS.gene016387.t1 AT2G22540 35.465 172 86 7 9 161 2 167 1.73e-16 76.3
MS.gene016387.t1 AT2G22540 35.465 172 86 7 9 161 2 167 1.73e-16 76.3
MS.gene016387.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.42e-16 74.3
MS.gene016387.t1 AT3G61120 51.471 68 33 0 9 76 2 69 5.76e-16 75.1
MS.gene016387.t1 AT2G42830 50.704 71 35 0 6 76 14 84 5.99e-16 75.1
MS.gene016387.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.13e-16 72.8
MS.gene016387.t1 AT2G42830 50.704 71 35 0 6 76 14 84 6.17e-16 75.1
MS.gene016387.t1 AT2G45660 50.000 68 34 0 10 77 3 70 6.39e-16 74.3
MS.gene016387.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.42e-16 75.1
MS.gene016387.t1 AT3G58780 50.704 71 35 0 6 76 20 90 7.12e-16 74.7
MS.gene016387.t1 AT1G22130 36.190 105 66 1 9 112 2 106 8.02e-16 75.9
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.82e-16 71.2
MS.gene016387.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.11e-15 74.7
MS.gene016387.t1 AT1G77980 37.143 105 65 1 9 112 2 106 1.59e-15 74.7
MS.gene016387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.63e-15 73.9
MS.gene016387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.63e-15 73.9
MS.gene016387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.63e-15 73.9
MS.gene016387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 1.63e-15 73.9
MS.gene016387.t1 AT4G24540 34.459 148 80 5 9 156 2 132 1.68e-15 73.2
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.87e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.87e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.87e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.87e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.87e-15 71.6
MS.gene016387.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.33e-15 73.2
MS.gene016387.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.33e-15 73.2
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.36e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.36e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.36e-15 71.6
MS.gene016387.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.52e-15 72.4
MS.gene016387.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.21e-15 71.2
MS.gene016387.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.21e-15 71.2
MS.gene016387.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.29e-15 72.4
MS.gene016387.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.23e-15 72.0
MS.gene016387.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.23e-15 72.0
MS.gene016387.t1 AT5G51870 50.746 67 33 0 10 76 3 69 5.70e-15 70.9
MS.gene016387.t1 AT1G17310 35.119 168 68 5 8 170 47 178 5.76e-15 71.6
MS.gene016387.t1 AT3G57390 48.529 68 35 0 9 76 2 69 6.21e-15 72.4
MS.gene016387.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.31e-15 72.0
MS.gene016387.t1 AT1G69120 40.659 91 51 1 9 99 2 89 6.47e-15 72.4
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.76e-15 71.2
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.76e-15 71.2
MS.gene016387.t1 AT1G17310 35.119 168 68 5 8 170 58 189 7.26e-15 71.6
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.53e-15 71.2
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.53e-15 71.2
MS.gene016387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 8.53e-15 71.2
MS.gene016387.t1 AT5G13790 40.777 103 56 2 9 111 2 99 8.85e-15 72.0
MS.gene016387.t1 AT3G30260 28.485 165 100 4 9 172 2 149 9.28e-15 71.6
MS.gene016387.t1 AT5G13790 41.935 93 45 1 9 101 2 85 9.53e-15 72.0
MS.gene016387.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.88e-15 71.2
MS.gene016387.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.88e-15 71.2
MS.gene016387.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.00e-14 70.9
MS.gene016387.t1 AT5G51870 47.222 72 38 0 5 76 21 92 1.02e-14 70.5
MS.gene016387.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.02e-14 71.6
MS.gene016387.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.50e-14 70.5
MS.gene016387.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.68e-14 70.5
MS.gene016387.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.70e-14 70.5
MS.gene016387.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.94e-14 70.5
MS.gene016387.t1 AT1G28450 29.371 143 95 3 5 141 4 146 2.09e-14 69.7
MS.gene016387.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.21e-14 68.9
MS.gene016387.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.22e-14 70.1
MS.gene016387.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.34e-14 69.3
MS.gene016387.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.64e-14 70.1
MS.gene016387.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.97e-14 68.9
MS.gene016387.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.35e-14 69.3
MS.gene016387.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.65e-14 68.9
MS.gene016387.t1 AT2G22540 34.884 172 82 8 9 161 2 162 7.06e-14 68.9
MS.gene016387.t1 AT2G14210 46.377 69 36 1 9 76 2 70 8.68e-14 68.9
MS.gene016387.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.02e-13 68.6
MS.gene016387.t1 AT1G24260 28.631 241 136 10 9 234 2 221 1.10e-13 68.6
MS.gene016387.t1 AT3G54340 47.619 63 33 0 9 71 2 64 1.48e-13 68.2
MS.gene016387.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.61e-13 67.4
MS.gene016387.t1 AT1G24260 26.772 254 138 10 9 234 2 235 1.74e-13 68.2
MS.gene016387.t1 AT5G20240 48.387 62 32 0 9 70 2 63 1.75e-13 66.2
MS.gene016387.t1 AT5G23260 43.617 94 45 3 5 90 12 105 2.95e-13 67.8
MS.gene016387.t1 AT5G23260 43.617 94 45 3 5 90 12 105 3.01e-13 67.8
MS.gene016387.t1 AT5G15800 46.377 69 36 1 9 76 2 70 3.03e-13 67.4
MS.gene016387.t1 AT3G02310 47.826 69 35 1 9 76 2 70 3.27e-13 67.4
MS.gene016387.t1 AT5G15800 46.377 69 36 1 9 76 2 70 4.29e-13 67.4
MS.gene016387.t1 AT3G58780 51.667 60 29 0 6 65 14 73 4.50e-13 67.0
MS.gene016387.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.75e-13 67.0
MS.gene016387.t1 AT5G23260 43.182 88 44 2 9 90 2 89 4.93e-13 67.0
MS.gene016387.t1 AT5G20240 48.387 62 32 0 9 70 2 63 5.16e-13 66.2
MS.gene016387.t1 AT3G58780 51.667 60 29 0 6 65 14 73 5.54e-13 67.0
MS.gene016387.t1 AT1G24260 26.562 256 135 11 9 234 2 234 9.82e-13 66.2
MS.gene016387.t1 AT2G03710 51.786 56 27 0 9 64 2 57 1.21e-12 64.7
MS.gene016387.t1 AT1G47760 34.483 116 61 3 9 123 2 103 1.92e-12 64.3
MS.gene016387.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.22e-12 64.7
MS.gene016387.t1 AT2G03710 51.786 56 27 0 9 64 2 57 3.38e-12 64.7
MS.gene016387.t1 AT5G65050 43.478 69 38 1 9 76 2 70 7.05e-12 62.4
MS.gene016387.t1 AT5G65070 40.580 69 40 1 9 76 2 70 9.04e-12 61.6
MS.gene016387.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.05e-11 62.0
MS.gene016387.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.11e-11 62.4
MS.gene016387.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.12e-11 62.0
MS.gene016387.t1 AT1G71692 41.429 70 40 1 9 77 2 71 1.45e-11 62.4
MS.gene016387.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.05e-11 61.6
MS.gene016387.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.14e-11 61.2
MS.gene016387.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.19e-11 61.6
MS.gene016387.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.67e-11 61.2
MS.gene016387.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.35e-11 61.2
MS.gene016387.t1 AT5G65070 40.580 69 40 1 9 76 2 70 3.50e-11 61.6
MS.gene016387.t1 AT4G37435 37.349 83 46 2 9 85 2 84 5.86e-11 60.1
MS.gene016387.t1 AT1G46408 35.294 119 68 4 10 119 5 123 8.44e-11 60.8

Find 55 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 8.2:+57533143 MS.gene016387:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 8.2:-57533078 None:intergenic
TCTTCTCCATGTCCAGTAAC+TGG 0.302941 8.2:-57532819 None:intergenic
AGGCGACCGAGGCTCAATTT+TGG 0.319875 8.2:+57532872 MS.gene016387:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.345119 8.2:+57533144 MS.gene016387:CDS
GACTCAGATCAACCAGTTAC+TGG 0.372422 8.2:+57532807 MS.gene016387:CDS
ATGTTGCAGTCTCATTTGTT+TGG 0.376821 8.2:+57533129 MS.gene016387:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 8.2:+57532984 MS.gene016387:CDS
TGGTGGGCTAGTCCCGTTGA+TGG 0.399835 8.2:+57532892 MS.gene016387:CDS
ATTGCATGGTACCATTGTTT+TGG 0.409018 8.2:-57532735 None:intergenic
TTTGGATGAGACTAAGAAAC+TGG 0.433965 8.2:+57532951 MS.gene016387:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 8.2:-57533068 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.441524 8.2:+57532902 MS.gene016387:CDS
TCCCGTTGATGGGATGAATA+GGG 0.449445 8.2:+57532903 MS.gene016387:CDS
AACAAATGAGACTGCAACAT+AGG 0.451158 8.2:-57533126 None:intergenic
TGGTTGCACATCATGCTGAT+AGG 0.453644 8.2:+57532971 MS.gene016387:CDS
CCTCGGTCGCCTTGCGCAAG+TGG 0.465805 8.2:-57532861 None:intergenic
CTCTATGACCGTATCAACAT+TGG 0.477809 8.2:-57532689 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.478546 8.2:-57532904 None:intergenic
GGAGGTGGATATGGACCCTC+TGG 0.496777 8.2:+57533171 MS.gene016387:CDS
ATGATGGAGAGGCATGTTAG+AGG 0.501643 8.2:-57533052 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 8.2:-57532779 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.508183 8.2:-57533087 None:intergenic
ACTGAGAGTGCAAAGCTCAC+TGG 0.526727 8.2:-57532605 None:intergenic
GGTGGGCTAGTCCCGTTGAT+GGG 0.535239 8.2:+57532893 MS.gene016387:CDS
GGCCCTATTCATCCCATCAA+CGG 0.536262 8.2:-57532905 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.539713 8.2:-57532688 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 8.2:+57532681 MS.gene016387:CDS
CCACTTGCGCAAGGCGACCG+AGG 0.551221 8.2:+57532861 MS.gene016387:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 8.2:-57532771 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 8.2:+57532569 MS.gene016387:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 8.2:+57533145 MS.gene016387:CDS
ATTCAACCATGTCGAGTGGA+AGG 0.567884 8.2:+57532482 None:intergenic
ACAAATGAGACTGCAACATA+GGG 0.571944 8.2:-57533125 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 8.2:+57532568 MS.gene016387:CDS
GATCAACCAGTTACTGGACA+TGG 0.586550 8.2:+57532813 MS.gene016387:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 8.2:-57532658 None:intergenic
AGCCCACCAAAATTGAGCCT+CGG 0.591317 8.2:-57532878 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 8.2:-57532684 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 8.2:-57533002 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 8.2:+57533146 MS.gene016387:CDS
AGTGAGCTTTGCACTCTCAG+TGG 0.609659 8.2:+57532607 MS.gene016387:CDS
AGAGCTGAACCACTTGCGCA+AGG 0.610527 8.2:+57532852 MS.gene016387:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 8.2:-57532582 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 8.2:-57533063 None:intergenic
TGTGATTCAACCATGTCGAG+TGG 0.620546 8.2:+57532478 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 8.2:+57532985 MS.gene016387:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 8.2:+57533147 MS.gene016387:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 8.2:+57532744 MS.gene016387:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 8.2:-57532749 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 8.2:-57533084 None:intergenic
CGAGTCCCACACCAAAACAA+TGG 0.664538 8.2:+57532724 MS.gene016387:CDS
TCGGATCAAAAGAATCCAGA+GGG 0.678771 8.2:-57533186 None:intergenic
CTCGGATCAAAAGAATCCAG+AGG 0.678961 8.2:-57533187 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 8.2:+57532493 MS.gene016387:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG - chr8.2:57532929-57532948 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG - chr8.2:57532522-57532541 None:intergenic 20.0%
! ATTTCCAACAAAAAATGGAA+TGG - chr8.2:57533025-57533044 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG + chr8.2:57533144-57533163 MS.gene016387:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG + chr8.2:57533143-57533162 MS.gene016387:CDS 25.0%
!!! ATTCCATTTTTTGTTGGAAA+TGG + chr8.2:57533024-57533043 MS.gene016387:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG + chr8.2:57532927-57532946 MS.gene016387:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG - chr8.2:57532930-57532949 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG + chr8.2:57532933-57532952 MS.gene016387:CDS 25.0%
AAAAATGGAATGGTTTGAGT+AGG - chr8.2:57533015-57533034 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG - chr8.2:57533030-57533049 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG + chr8.2:57533145-57533164 MS.gene016387:CDS 30.0%
!!! CAAACCATTCCATTTTTTGT+TGG + chr8.2:57533018-57533037 MS.gene016387:CDS 30.0%
AACAAATGAGACTGCAACAT+AGG - chr8.2:57533129-57533148 None:intergenic 35.0%
ACAAATGAGACTGCAACATA+GGG - chr8.2:57533128-57533147 None:intergenic 35.0%
ATGTTGCAGTCTCATTTGTT+TGG + chr8.2:57533129-57533148 MS.gene016387:CDS 35.0%
TCTATGACCGTATCAACATT+GGG - chr8.2:57532691-57532710 None:intergenic 35.0%
TTTGGATGAGACTAAGAAAC+TGG + chr8.2:57532951-57532970 MS.gene016387:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr8.2:57532738-57532757 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG + chr8.2:57533146-57533165 MS.gene016387:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG + chr8.2:57533147-57533166 MS.gene016387:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG - chr8.2:57532661-57532680 None:intergenic 40.0%
CTCTATGACCGTATCAACAT+TGG - chr8.2:57532692-57532711 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr8.2:57532744-57532763 MS.gene016387:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG - chr8.2:57533081-57533100 None:intergenic 40.0%
! GCTGGAAACATTTGAGTTTG+CGG - chr8.2:57533090-57533109 None:intergenic 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG - chr8.2:57533108-57533127 None:intergenic 40.0%
!!! ATGGTACCATTGTTTTGGTG+TGG - chr8.2:57532733-57532752 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr8.2:57532661-57532680 MS.gene016387:CDS 40.0%
!!! TGGTACCATTGTTTTGGTGT+GGG - chr8.2:57532732-57532751 None:intergenic 40.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr8.2:57532585-57532604 None:intergenic 45.0%
GACTCAGATCAACCAGTTAC+TGG + chr8.2:57532807-57532826 MS.gene016387:CDS 45.0%
GATCAACCAGTTACTGGACA+TGG + chr8.2:57532813-57532832 MS.gene016387:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr8.2:57532985-57533004 MS.gene016387:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr8.2:57532752-57532771 None:intergenic 45.0%
TCTTCTCCATGTCCAGTAAC+TGG - chr8.2:57532822-57532841 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG - chr8.2:57532687-57532706 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr8.2:57532984-57533003 MS.gene016387:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG + chr8.2:57532681-57532700 MS.gene016387:CDS 45.0%
TGGTTGCACATCATGCTGAT+AGG + chr8.2:57532971-57532990 MS.gene016387:CDS 45.0%
! ATGATGGAGAGGCATGTTAG+AGG - chr8.2:57533055-57533074 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG - chr8.2:57533087-57533106 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG + chr8.2:57532903-57532922 MS.gene016387:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr8.2:57532513-57532532 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG + chr8.2:57532641-57532660 MS.gene016387:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr8.2:57533066-57533085 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG + chr8.2:57532642-57532661 MS.gene016387:CDS 45.0%
AGCCCACCAAAATTGAGCCT+CGG - chr8.2:57532881-57532900 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCAG+TGG + chr8.2:57532607-57532626 MS.gene016387:CDS 50.0%
CGAGTCCCACACCAAAACAA+TGG + chr8.2:57532724-57532743 MS.gene016387:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG - chr8.2:57532907-57532926 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG - chr8.2:57532908-57532927 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG + chr8.2:57533150-57533169 MS.gene016387:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr8.2:57533153-57533172 MS.gene016387:CDS 50.0%
! ACTGAGAGTGCAAAGCTCAC+TGG - chr8.2:57532608-57532627 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG - chr8.2:57532782-57532801 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG + chr8.2:57532902-57532921 MS.gene016387:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG + chr8.2:57532648-57532667 MS.gene016387:CDS 50.0%
!! GACCGAGGCTCAATTTTGGT+GGG + chr8.2:57532876-57532895 MS.gene016387:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG - chr8.2:57533071-57533090 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr8.2:57532640-57532659 MS.gene016387:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr8.2:57533156-57533175 MS.gene016387:CDS 55.0%
AGAGCTGAACCACTTGCGCA+AGG + chr8.2:57532852-57532871 MS.gene016387:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr8.2:57532493-57532512 MS.gene016387:CDS 55.0%
! AGGCGACCGAGGCTCAATTT+TGG + chr8.2:57532872-57532891 MS.gene016387:CDS 55.0%
! CGACCGAGGCTCAATTTTGG+TGG + chr8.2:57532875-57532894 MS.gene016387:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr8.2:57532568-57532587 MS.gene016387:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr8.2:57532569-57532588 MS.gene016387:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG - chr8.2:57533005-57533024 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr8.2:57533162-57533181 MS.gene016387:CDS 60.0%
GGAGGTGGATATGGACCCTC+TGG + chr8.2:57533171-57533190 MS.gene016387:CDS 60.0%
!! GGTGGGCTAGTCCCGTTGAT+GGG + chr8.2:57532893-57532912 MS.gene016387:CDS 60.0%
!! TGGTGGGCTAGTCCCGTTGA+TGG + chr8.2:57532892-57532911 MS.gene016387:CDS 60.0%
GCTCGCGCACATTGGCGCTA+CGG - chr8.2:57532774-57532793 None:intergenic 65.0%
CCACTTGCGCAAGGCGACCG+AGG + chr8.2:57532861-57532880 MS.gene016387:CDS 70.0%
CCTCGGTCGCCTTGCGCAAG+TGG - chr8.2:57532864-57532883 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 57532490 57533203 57532490 ID=MS.gene016387
chr8.2 mRNA 57532490 57533203 57532490 ID=MS.gene016387.t1;Parent=MS.gene016387
chr8.2 exon 57532490 57533203 57532490 ID=MS.gene016387.t1.exon1;Parent=MS.gene016387.t1
chr8.2 CDS 57532490 57533203 57532490 ID=cds.MS.gene016387.t1;Parent=MS.gene016387.t1
Gene Sequence

>MS.gene016387

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCAGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGAGCGTTATCTCTCTCGAGTCCCACACCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGTTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAACCACTTGCGCAAGGCGACCGAGGCTCAATTTTGGTGGGCTAGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGATGAGACTAAGAAACTGGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAGTCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCTGGATTCTTTTGA
Protein sequence

>MS.gene016387.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLSGADVALVVFSPGEKVFSFGQPNVDTVIERYLSRVPHQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELNHLRKATEAQFWWASPVDGMNRAQLEFFKKALDETKKLVAHHADRLVIQGAPTQTIPFFVGNGSSSNMPLHHQPNPPQTQMFPAQFFQNPMLQSHLFGFNNMGGGGGYGPSGFF