AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene017798


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017798.t1 MTR_7g090510 98.742 477 6 0 1 477 1 477 0.0 988
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene017798.t1 AT4G33030 77.339 481 101 4 1 477 1 477 0.0 751

Find 122 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGACTATGATGCAATATT+TGG 0.140392 7.3:-18623682 MS.gene017798:CDS
CTGATGCTGTTGTCCATTTC+GGG 0.173565 7.3:-18624098 MS.gene017798:CDS
ATTACTCGCTTCGGTTTAAA+AGG 0.187741 7.3:+18624378 None:intergenic
CCTTCCTCAATATCAATATT+TGG 0.201469 7.3:+18623916 None:intergenic
CCTGATGCTGTTGTCCATTT+CGG 0.263402 7.3:-18624099 MS.gene017798:CDS
CTGAATCAAGGAGTGGTATA+TGG 0.263921 7.3:-18623751 MS.gene017798:CDS
CGCAAGAAAAGCCGTCTAAA+TGG 0.294684 7.3:+18624492 None:intergenic
AGCTTTCACTTGCAAAGCTT+GGG 0.304992 7.3:-18623791 MS.gene017798:CDS
TAGTTTGAACCGGGGCTTCC+TGG 0.305214 7.3:+18624412 None:intergenic
TGCAAGTGAAAGCTATGTTA+TGG 0.335168 7.3:+18623800 None:intergenic
GGTCATCCACTCACTGTATA+TGG 0.336464 7.3:-18623622 MS.gene017798:CDS
GTGTTTCTTGGAGAAAGGTT+GGG 0.344780 7.3:-18621801 MS.gene017798:CDS
TGCATGAAGAGTTGTGTAAC+AGG 0.360759 7.3:-18623705 MS.gene017798:CDS
TGATTCACTGCTTAACTTTG+CGG 0.361307 7.3:-18621866 MS.gene017798:CDS
GCCCCGGTTCAAACTAGTTC+TGG 0.371819 7.3:-18624405 MS.gene017798:CDS
CTCATAGGACTTGAAGGTTT+CGG 0.374096 7.3:+18624122 None:intergenic
AAATTATGCCTGGTGTTTCT+TGG 0.387099 7.3:-18621813 MS.gene017798:CDS
CGATCCTGGATGGAGGAAAT+TGG 0.387488 7.3:+18624222 None:intergenic
TAACCCTAGAGTGGAGTTAG+AGG 0.392922 7.3:-18621965 MS.gene017798:CDS
GCAAGTGAAAGCTATGTTAT+GGG 0.394552 7.3:+18623801 None:intergenic
TCTAGGGTTAGGCACTGATA+TGG 0.398330 7.3:+18621978 None:intergenic
AACACTAAACTAGTTGATCT+TGG 0.398824 7.3:-18621922 MS.gene017798:CDS
TAAAATGAGCTAGCTTGCTT+TGG 0.399512 7.3:+18623847 None:intergenic
TCCAACACTGAATGCGATCC+TGG 0.403609 7.3:+18624208 None:intergenic
TTGAAGACTCGGAACTCTCC+AGG 0.404275 7.3:+18622084 None:intergenic
GGTGTTTCTTGGAGAAAGGT+TGG 0.408948 7.3:-18621802 MS.gene017798:CDS
CGGATCGCTGTTCCCCGAAA+TGG 0.410099 7.3:+18624085 None:intergenic
TAGCTTTCACTTGCAAAGCT+TGG 0.414968 7.3:-18623792 MS.gene017798:CDS
ATTGAATCGGTTCTGTGTTC+AGG 0.420146 7.3:-18623653 MS.gene017798:CDS
ACAGAAACCAAGGAAAAGTT+TGG 0.427205 7.3:-18624466 MS.gene017798:CDS
CCGAAATGGACAACAGCATC+AGG 0.432925 7.3:+18624099 None:intergenic
CGGAACTCTCCAGGGTTAGC+CGG 0.438324 7.3:+18622093 None:intergenic
ATCAGGCTCATAGGACTTGA+AGG 0.444397 7.3:+18624116 None:intergenic
TGAATCAAGGAGTGGTATAT+GGG 0.446459 7.3:-18623750 MS.gene017798:CDS
CTAGTCAAGCTTGGGACAAT+GGG 0.448728 7.3:-18623952 MS.gene017798:CDS
TTCTGTGTTCAGGCTGCTGT+TGG 0.451203 7.3:-18623643 MS.gene017798:CDS
CCTCGTAACCTTTGTTAGAA+AGG 0.451936 7.3:+18624310 None:intergenic
CCAATGACCATTACTCGCTT+CGG 0.452722 7.3:+18624369 None:intergenic
GATGTTGAGCATTGGTGAAA+AGG 0.453224 7.3:+18624552 None:intergenic
TGTTTCTTGGAGAAAGGTTG+GGG 0.454574 7.3:-18621800 MS.gene017798:CDS
GCCTGGTGTTTCTTGGAGAA+AGG 0.462195 7.3:-18621806 MS.gene017798:CDS
TCGCCAGAACTAGTTTGAAC+CGG 0.465526 7.3:+18624402 None:intergenic
TTCTACAGTTTCAACTGGCC+AGG 0.466150 7.3:-18624430 MS.gene017798:CDS
TACGAAAGCTGGTGAGAAGT+TGG 0.467785 7.3:-18622016 MS.gene017798:CDS
CTTGGGACAATGGGTGAATA+CGG 0.477903 7.3:-18623943 MS.gene017798:CDS
AATGCTTCTACAGTTTCAAC+TGG 0.486284 7.3:-18624435 MS.gene017798:CDS
GCTGAGCTTGTTACGAAAGC+TGG 0.488739 7.3:-18622027 MS.gene017798:CDS
ACGAAAGCTGGTGAGAAGTT+GGG 0.489003 7.3:-18622015 MS.gene017798:CDS
CAGTGTTGGAAATCTCTCAC+TGG 0.491751 7.3:-18624195 MS.gene017798:CDS
TATTTGGAACTGCATTGAAT+CGG 0.493431 7.3:-18623666 MS.gene017798:CDS
GACAACAGCATCAGGCTCAT+AGG 0.494062 7.3:+18624107 None:intergenic
CAGTAAATTGATTGAAGACT+CGG 0.495401 7.3:+18622073 None:intergenic
CCGAAGCGAGTAATGGTCAT+TGG 0.499010 7.3:-18624369 MS.gene017798:CDS
CACAGCAAAACAATGTTGTC+GGG 0.499040 7.3:-18624023 MS.gene017798:CDS
CACACCAATTTCCTCCATCC+AGG 0.500313 7.3:-18624226 MS.gene017798:CDS
CGCCAGAACTAGTTTGAACC+GGG 0.501193 7.3:+18624403 None:intergenic
AACCTTTGTTAGAAAGGTGG+AGG 0.503426 7.3:+18624316 None:intergenic
GAGCTAGCTTGCTTTGGATA+CGG 0.506316 7.3:+18623853 None:intergenic
GGAACTCTCCAGGGTTAGCC+GGG 0.506813 7.3:+18622094 None:intergenic
TTGCGGTTCAGTACAAAGAC+CGG 0.508555 7.3:-18621849 MS.gene017798:CDS
ATTGTCATCTAGTCAAGCTT+GGG 0.509144 7.3:-18623960 MS.gene017798:CDS
CCAAATATTGATATTGAGGA+AGG 0.509151 7.3:-18623916 MS.gene017798:CDS
GACCGGTCTATCATAGAGTA+AGG 0.509269 7.3:+18624060 None:intergenic
AACTCCAAATATTGATATTG+AGG 0.510539 7.3:-18623920 MS.gene017798:CDS
GTAATGGTCATTGGTGGAGA+TGG 0.511804 7.3:-18624360 MS.gene017798:CDS
TCTAGTCAAGCTTGGGACAA+TGG 0.511865 7.3:-18623953 MS.gene017798:CDS
GATTGTCATCTAGTCAAGCT+TGG 0.511909 7.3:-18623961 MS.gene017798:CDS
CCACTCACTGTATATGGTAA+AGG 0.514565 7.3:-18623616 MS.gene017798:CDS
TGAGCTTGCCATTGCAAACC+CGG 0.515121 7.3:-18622112 MS.gene017798:CDS
TTCAACTGGCCAGGAAGCCC+CGG 0.518120 7.3:-18624421 MS.gene017798:CDS
TGCTCCTCTAACTCCACTCT+AGG 0.523420 7.3:+18621961 None:intergenic
CTCCTTACTCTATGATAGAC+CGG 0.525170 7.3:-18624062 MS.gene017798:CDS
TTACTCGCTTCGGTTTAAAA+GGG 0.531134 7.3:+18624379 None:intergenic
ATTGCAAACCCGGCTAACCC+TGG 0.532722 7.3:-18622102 MS.gene017798:CDS
GTGTATACACAGCTCTTGAC+CGG 0.533184 7.3:+18624043 None:intergenic
ACACAGCAAAACAATGTTGT+CGG 0.535211 7.3:-18624024 MS.gene017798:CDS
TGTATATGGTAAAGGAGGCC+AGG 0.535491 7.3:-18623608 MS.gene017798:intron
CGGGCAACTGATCTGAATCA+AGG 0.540528 7.3:-18623763 MS.gene017798:CDS
TGGAGATGGATACTGTGGTT+GGG 0.542951 7.3:-18624346 MS.gene017798:CDS
TAAACAAGGTTTGTTTGAAG+CGG 0.550343 7.3:+18624578 None:intergenic
GCTTTCACTTGCAAAGCTTG+GGG 0.550528 7.3:-18623790 MS.gene017798:CDS
GTGGAGATGGATACTGTGGT+TGG 0.563462 7.3:-18624347 MS.gene017798:CDS
ACACTGAATGCGATCCTGGA+TGG 0.563966 7.3:+18624212 None:intergenic
GCTCCTCTAACTCCACTCTA+GGG 0.565035 7.3:+18621962 None:intergenic
TCCAGGATCGCATTCAGTGT+TGG 0.567073 7.3:-18624209 MS.gene017798:CDS
GACACTATGCAAATTATGCC+TGG 0.568071 7.3:-18621823 MS.gene017798:CDS
TGTCCTTCCGTTGTGAGTGA+TGG 0.571830 7.3:+18623885 None:intergenic
AGGGTTAGCCGGGTTTGCAA+TGG 0.573221 7.3:+18622104 None:intergenic
CGTAACCTTTGTTAGAAAGG+TGG 0.578750 7.3:+18624313 None:intergenic
AAAAGTATTGAGCTATACAT+TGG 0.580925 7.3:-18624171 MS.gene017798:CDS
TAGAAAATGATGTTGAGCAT+TGG 0.583068 7.3:+18624544 None:intergenic
AAGCGAGTAATGGTCATTGG+TGG 0.585308 7.3:-18624366 MS.gene017798:CDS
TCTAACTCCACTCTAGGGTT+AGG 0.586318 7.3:+18621967 None:intergenic
AGTGTTGGAAATCTCTCACT+GGG 0.586597 7.3:-18624194 MS.gene017798:CDS
CCTTTCTAACAAAGGTTACG+AGG 0.587127 7.3:-18624310 MS.gene017798:CDS
CCTTTACCATATACAGTGAG+TGG 0.594076 7.3:+18623616 None:intergenic
TGAAGACTCGGAACTCTCCA+GGG 0.596954 7.3:+18622085 None:intergenic
GTTTGAAGCGGAGAAAGTCA+AGG 0.597796 7.3:+18624590 None:intergenic
CTTTCACTTGCAAAGCTTGG+GGG 0.598323 7.3:-18623789 MS.gene017798:CDS
TGAGAGAATCTAGTCCAAGC+TGG 0.600491 7.3:+18624247 None:intergenic
GCCCTCCACCTTTCTAACAA+AGG 0.602875 7.3:-18624318 MS.gene017798:CDS
TGTATCTCTTATGTCAAGGA+AGG 0.605182 7.3:+18622146 None:intergenic
GAACTGTATCTCTTATGTCA+AGG 0.608223 7.3:+18622142 None:intergenic
CTCACTGTATATGGTAAAGG+AGG 0.608718 7.3:-18623613 MS.gene017798:CDS
ATCAGTGCCTAACCCTAGAG+TGG 0.611638 7.3:-18621974 MS.gene017798:CDS
ACCTTTGTTAGAAAGGTGGA+GGG 0.612052 7.3:+18624317 None:intergenic
AGAGAATCTGAAAGAAAGTG+TGG 0.612228 7.3:+18621892 None:intergenic
TCGAACAAGGTTGTCAACAA+TGG 0.614328 7.3:+18624284 None:intergenic
TGATGCTGTTGTCCATTTCG+GGG 0.617432 7.3:-18624097 MS.gene017798:CDS
TTACCATCACTCACAACGGA+AGG 0.617927 7.3:-18623888 MS.gene017798:CDS
CTGAATGCGATCCTGGATGG+AGG 0.618262 7.3:+18624215 None:intergenic
TGCGGTTCAGTACAAAGACC+GGG 0.625601 7.3:-18621848 MS.gene017798:CDS
TCTTGCGAGAACAGAAACCA+AGG 0.641034 7.3:-18624476 MS.gene017798:CDS
ACCTTTCTCCAAGAAACACC+AGG 0.645278 7.3:+18621805 None:intergenic
GTCTATCATAGAGTAAGGAG+CGG 0.663083 7.3:+18624065 None:intergenic
GAATCAAGGAGTGGTATATG+GGG 0.664294 7.3:-18623749 MS.gene017798:CDS
AACTGATCTGAATCAAGGAG+TGG 0.668884 7.3:-18623758 MS.gene017798:CDS
TAATTTGCATAGTGTCAACC+CGG 0.674273 7.3:+18621830 None:intergenic
ATTGGTGGAGATGGATACTG+TGG 0.674313 7.3:-18624351 MS.gene017798:CDS
TATATTACCATCACTCACAA+CGG 0.680492 7.3:-18623892 MS.gene017798:CDS
GCCAGAACTAGTTTGAACCG+GGG 0.700751 7.3:+18624404 None:intergenic
TGCTATAAAAGAGTACAGAG+AGG 0.711022 7.3:-18623983 MS.gene017798:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAATGTGTTATTAAT+AGG - chr7.3:18623865-18623884 MS.gene017798:CDS 10.0%
!!! TTAAAAAAATATTTTTTGTG+TGG - chr7.3:18623832-18623851 MS.gene017798:CDS 10.0%
!!! TTTTTTTAATCTTATTTTCT+AGG + chr7.3:18623821-18623840 None:intergenic 10.0%
!! TATCAATAAGAAATAAACAA+GGG + chr7.3:18622822-18622841 None:intergenic 15.0%
!! TATGCTTAATAAGTTAATAA+TGG + chr7.3:18623074-18623093 None:intergenic 15.0%
!! TTATCAATAAGAAATAAACA+AGG + chr7.3:18622823-18622842 None:intergenic 15.0%
!! TTATTGTTTAAATTACTTCT+TGG - chr7.3:18624008-18624027 MS.gene017798:CDS 15.0%
!!! CAGATATTTTTTTAGAAAAT+AGG - chr7.3:18623451-18623470 MS.gene017798:intron 15.0%
!! AATTGGTACAAATTATAGTT+AGG - chr7.3:18623744-18623763 MS.gene017798:CDS 20.0%
!! AATTGGTACAAATTATAGTT+AGG + chr7.3:18623763-18623744 None:intergenic 20.0%
!! ACATGCAAAAAATTAATTAG+TGG + chr7.3:18624194-18624213 None:intergenic 20.0%
!! ATAATTAAACCATATAACTG+CGG - chr7.3:18623246-18623265 MS.gene017798:intron 20.0%
!! ATTATAAAATGTATTCTACG+AGG + chr7.3:18623030-18623049 None:intergenic 20.0%
!! ATTGGTACAAATTATAGTTA+GGG - chr7.3:18623745-18623764 MS.gene017798:CDS 20.0%
!! ATTGGTACAAATTATAGTTA+GGG + chr7.3:18623764-18623745 None:intergenic 20.0%
!! CATATAGCAAAATAAATGTA+AGG - chr7.3:18623897-18623916 MS.gene017798:CDS 20.0%
!!! AACTATAATTTGTACCAATT+TGG - chr7.3:18623528-18623547 MS.gene017798:intron 20.0%
!!! AACTATAATTTGTACCAATT+TGG + chr7.3:18623547-18623528 None:intergenic 20.0%
!!! GAAAAATTTGTTAATGGAAA+TGG - chr7.3:18624126-18624145 MS.gene017798:CDS 20.0%
! AACTCCAAATATTGATATTG+AGG - chr7.3:18622472-18622491 MS.gene017798:intron 25.0%
! ATAAGAAATAAACAAGGGAT+TGG + chr7.3:18622817-18622836 None:intergenic 25.0%
! ATAGTCAGCATATTCAATAT+GGG - chr7.3:18624031-18624050 MS.gene017798:CDS 25.0%
! CTAAACCATATTGAATTTCA+CGG + chr7.3:18624066-18624085 None:intergenic 25.0%
! GAATCTATGCACATAAAAAA+AGG + chr7.3:18623303-18623322 None:intergenic 25.0%
! TATTACCGTGAAATTCAATA+TGG - chr7.3:18624058-18624077 MS.gene017798:CDS 25.0%
! TTGGTACAAATTATAGTTAG+GGG - chr7.3:18623746-18623765 MS.gene017798:CDS 25.0%
! TTGGTACAAATTATAGTTAG+GGG + chr7.3:18623765-18623746 None:intergenic 25.0%
! TTTGACTATGATGCAATATT+TGG - chr7.3:18622710-18622729 MS.gene017798:intron 25.0%
!! AAATTCTATGATTTTGCCAT+TGG + chr7.3:18622871-18622890 None:intergenic 25.0%
!! CTCATTTTATCATTTAAGCA+AGG - chr7.3:18622559-18622578 MS.gene017798:intron 25.0%
!! GTTTTTCTTTTCGACAATTT+TGG + chr7.3:18623107-18623126 None:intergenic 25.0%
!!! AAAAGTATTGAGCTATACAT+TGG - chr7.3:18622221-18622240 MS.gene017798:intron 25.0%
!!! ATAATTAAAGAGTATTGGTG+AGG - chr7.3:18622943-18622962 MS.gene017798:intron 25.0%
!!! GATGCTGAAAAATTTGTTAA+TGG - chr7.3:18624120-18624139 MS.gene017798:CDS 25.0%
!!! TTTTTCAAACTTTTCGAACT+TGG - chr7.3:18622896-18622915 MS.gene017798:intron 25.0%
AACACTAAACTAGTTGATCT+TGG - chr7.3:18624470-18624489 MS.gene017798:CDS 30.0%
AATAGGCTTATTCAATCAAC+CGG - chr7.3:18623468-18623487 MS.gene017798:intron 30.0%
ACTCCAAAAATCCATTTAGA+CGG - chr7.3:18621889-18621908 MS.gene017798:CDS 30.0%
ATGAGATTTACATACGAACA+TGG - chr7.3:18624095-18624114 MS.gene017798:CDS 30.0%
CAGTAAATTGATTGAAGACT+CGG + chr7.3:18624322-18624341 None:intergenic 30.0%
CCAAATATTGATATTGAGGA+AGG - chr7.3:18622476-18622495 MS.gene017798:intron 30.0%
CCTTCCTCAATATCAATATT+TGG + chr7.3:18622479-18622498 None:intergenic 30.0%
CGTTAACTTATGTACCAATT+TGG - chr7.3:18623611-18623630 MS.gene017798:CDS 30.0%
GAGACAATCAATGAAGTTAA+GGG - chr7.3:18623777-18623796 MS.gene017798:CDS 30.0%
GATAGTCAGCATATTCAATA+TGG - chr7.3:18624030-18624049 MS.gene017798:CDS 30.0%
TAGAAAATGATGTTGAGCAT+TGG + chr7.3:18621851-18621870 None:intergenic 30.0%
TAGTAACGAAGCAAAACATA+GGG + chr7.3:18623556-18623575 None:intergenic 30.0%
TATAACTGCGGAAAATATGA+TGG - chr7.3:18623258-18623277 MS.gene017798:intron 30.0%
TATATTACCATCACTCACAA+CGG - chr7.3:18622500-18622519 MS.gene017798:intron 30.0%
TCAAAAAAACGTGAACAGAA+AGG + chr7.3:18623670-18623689 None:intergenic 30.0%
TGAGACAATCAATGAAGTTA+AGG - chr7.3:18623776-18623795 MS.gene017798:CDS 30.0%
! CTCAACATCATTTTCTAACA+CGG - chr7.3:18621854-18621873 MS.gene017798:CDS 30.0%
! CTTCATTGATTGTCTCAATT+TGG + chr7.3:18623773-18623792 None:intergenic 30.0%
! GGTGCATAATTAAAGAGTAT+TGG - chr7.3:18622938-18622957 MS.gene017798:intron 30.0%
! TAAACAAGGTTTGTTTGAAG+CGG + chr7.3:18621817-18621836 None:intergenic 30.0%
! TATTTGGAACTGCATTGAAT+CGG - chr7.3:18622726-18622745 MS.gene017798:intron 30.0%
! TCATATTTTCCGCAGTTATA+TGG + chr7.3:18623258-18623277 None:intergenic 30.0%
!!! TGGTGAAAAGGTTTTAAACA+AGG + chr7.3:18621831-18621850 None:intergenic 30.0%
!!! TTACTAGTTTTAGTCCTTTC+TGG - chr7.3:18623570-18623589 MS.gene017798:intron 30.0%
AAATTATGCCTGGTGTTTCT+TGG - chr7.3:18624579-18624598 MS.gene017798:CDS 35.0%
AATCAATGAAGTTAAGGGAC+CGG - chr7.3:18623782-18623801 MS.gene017798:CDS 35.0%
AATCAATGAAGTTAAGGGAC+CGG + chr7.3:18623801-18623782 None:intergenic 35.0%
AATGCTTCTACAGTTTCAAC+TGG - chr7.3:18621957-18621976 MS.gene017798:CDS 35.0%
ACACAGCAAAACAATGTTGT+CGG - chr7.3:18622368-18622387 MS.gene017798:intron 35.0%
ACAGAAACCAAGGAAAAGTT+TGG - chr7.3:18621926-18621945 MS.gene017798:CDS 35.0%
AGAGAATCTGAAAGAAAGTG+TGG + chr7.3:18624503-18624522 None:intergenic 35.0%
AGATTTACATACGAACATGG+TGG - chr7.3:18624098-18624117 MS.gene017798:CDS 35.0%
AGGCTTGATCTTCAATGAAT+AGG - chr7.3:18623917-18623936 MS.gene017798:CDS 35.0%
AGTAACAGAGCAAAACATAG+AGG - chr7.3:18623717-18623736 MS.gene017798:CDS 35.0%
AGTAACGAAGCAAAACATAG+GGG + chr7.3:18623555-18623574 None:intergenic 35.0%
ATTACTCGCTTCGGTTTAAA+AGG + chr7.3:18622017-18622036 None:intergenic 35.0%
ATTGTCATCTAGTCAAGCTT+GGG - chr7.3:18622432-18622451 MS.gene017798:intron 35.0%
CAAAACATAGAGGACCAAAT+TGG - chr7.3:18623727-18623746 MS.gene017798:CDS 35.0%
CAATAGAGTAGTACCTCAAA+TGG - chr7.3:18623353-18623372 MS.gene017798:intron 35.0%
CTAGTAACGAAGCAAAACAT+AGG + chr7.3:18623557-18623576 None:intergenic 35.0%
GAAAGGACTAAAACTAGGAA+CGG + chr7.3:18623653-18623672 None:intergenic 35.0%
GAACAGAAAGGACTAAAACT+AGG + chr7.3:18623658-18623677 None:intergenic 35.0%
GAACTGTATCTCTTATGTCA+AGG + chr7.3:18624253-18624272 None:intergenic 35.0%
GAGACAAAAAACTCCATTTG+AGG + chr7.3:18623369-18623388 None:intergenic 35.0%
GATTCACATGTTTCAGACTA+GGG - chr7.3:18624223-18624242 MS.gene017798:CDS 35.0%
GCAAGTGAAAGCTATGTTAT+GGG + chr7.3:18622594-18622613 None:intergenic 35.0%
GCGACAATCAATGAAGTTAA+GGG + chr7.3:18623495-18623514 None:intergenic 35.0%
GGATGTGTTTATGTCATTAC+TGG - chr7.3:18622917-18622936 MS.gene017798:intron 35.0%
GTCGAAAAGAAAAACTGCTA+AGG - chr7.3:18623112-18623131 MS.gene017798:intron 35.0%
TGAATCAAGGAGTGGTATAT+GGG - chr7.3:18622642-18622661 MS.gene017798:intron 35.0%
TGATTCACATGTTTCAGACT+AGG - chr7.3:18624222-18624241 MS.gene017798:CDS 35.0%
TGATTCACTGCTTAACTTTG+CGG - chr7.3:18624526-18624545 MS.gene017798:CDS 35.0%
TGCAAGTGAAAGCTATGTTA+TGG + chr7.3:18622595-18622614 None:intergenic 35.0%
TGCGACAATCAATGAAGTTA+AGG + chr7.3:18623496-18623515 None:intergenic 35.0%
TGTATCTCTTATGTCAAGGA+AGG + chr7.3:18624249-18624268 None:intergenic 35.0%
TTACTCGCTTCGGTTTAAAA+GGG + chr7.3:18622016-18622035 None:intergenic 35.0%
TTTGAGAGAAACCAACAGAA+AGG - chr7.3:18623685-18623704 MS.gene017798:CDS 35.0%
TTTGAGAGAAACTACCAGAA+AGG + chr7.3:18623587-18623606 None:intergenic 35.0%
! CTGATATGGTTTTCACATCA+AGG + chr7.3:18624403-18624422 None:intergenic 35.0%
! CTTCATTGATTGTCGCAATT+TGG - chr7.3:18623499-18623518 MS.gene017798:intron 35.0%
! CTTTTCGACAATTTTGGATC+AGG + chr7.3:18623101-18623120 None:intergenic 35.0%
! TAATTTGCATAGTGTCAACC+CGG + chr7.3:18624565-18624584 None:intergenic 35.0%
! TGCTATAAAAGAGTACAGAG+AGG - chr7.3:18622409-18622428 MS.gene017798:intron 35.0%
! TTTTAAACCGAAGCGAGTAA+TGG - chr7.3:18622016-18622035 MS.gene017798:CDS 35.0%
!! AAGCCGTCTAAATGGATTTT+TGG + chr7.3:18621895-18621914 None:intergenic 35.0%
!! ATCTTCGCCTAAAGTTTTGA+AGG + chr7.3:18623953-18623972 None:intergenic 35.0%
!! TAAAATGAGCTAGCTTGCTT+TGG + chr7.3:18622548-18622567 None:intergenic 35.0%
!!! CTAGTTTTAGTCCTTTCTGT+TGG + chr7.3:18623675-18623656 None:intergenic 35.0%
!!! TCTTCGCCTAAAGTTTTGAA+GGG + chr7.3:18623952-18623971 None:intergenic 35.0%
AACCTTTGTTAGAAAGGTGG+AGG + chr7.3:18622079-18622098 None:intergenic 40.0%
AACTGATCTGAATCAAGGAG+TGG - chr7.3:18622634-18622653 MS.gene017798:intron 40.0%
ACCTTTGTTAGAAAGGTGGA+GGG + chr7.3:18622078-18622097 None:intergenic 40.0%
AGAACAGTGACTGTTTCCAA+TGG - chr7.3:18622852-18622871 MS.gene017798:intron 40.0%
AGCTTTCACTTGCAAAGCTT+GGG - chr7.3:18622601-18622620 MS.gene017798:intron 40.0%
ATCAATGAAGTTAAGGGACC+GGG - chr7.3:18623783-18623802 MS.gene017798:CDS 40.0%
ATGGAAGTAAATGTCAACGC+AGG + chr7.3:18623055-18623074 None:intergenic 40.0%
CAAAACATAGGGGACCAAAT+TGG + chr7.3:18623545-18623564 None:intergenic 40.0%
CACAGCAAAACAATGTTGTC+GGG - chr7.3:18622369-18622388 MS.gene017798:intron 40.0%
CCACTCACTGTATATGGTAA+AGG - chr7.3:18622776-18622795 MS.gene017798:intron 40.0%
CCTCGTAACCTTTGTTAGAA+AGG + chr7.3:18622085-18622104 None:intergenic 40.0%
CCTTTACCATATACAGTGAG+TGG + chr7.3:18622779-18622798 None:intergenic 40.0%
CCTTTCTAACAAAGGTTACG+AGG - chr7.3:18622082-18622101 MS.gene017798:CDS 40.0%
CGTAACCTTTGTTAGAAAGG+TGG + chr7.3:18622082-18622101 None:intergenic 40.0%
CTCACTGTATATGGTAAAGG+AGG - chr7.3:18622779-18622798 MS.gene017798:intron 40.0%
CTCATAGGACTTGAAGGTTT+CGG + chr7.3:18622273-18622292 None:intergenic 40.0%
CTCCTTACTCTATGATAGAC+CGG - chr7.3:18622330-18622349 MS.gene017798:intron 40.0%
CTGAATCAAGGAGTGGTATA+TGG - chr7.3:18622641-18622660 MS.gene017798:intron 40.0%
GAATCAAGGAGTGGTATATG+GGG - chr7.3:18622643-18622662 MS.gene017798:intron 40.0%
GACACTATGCAAATTATGCC+TGG - chr7.3:18624569-18624588 MS.gene017798:CDS 40.0%
GATCAAAAAGACGTCGAACA+AGG + chr7.3:18622124-18622143 None:intergenic 40.0%
GATTGTCATCTAGTCAAGCT+TGG - chr7.3:18622431-18622450 MS.gene017798:intron 40.0%
GGCTACTACTAGTGTATAGA+TGG - chr7.3:18624147-18624166 MS.gene017798:CDS 40.0%
GTCTATCATAGAGTAAGGAG+CGG + chr7.3:18622330-18622349 None:intergenic 40.0%
GTGTTTCTTGGAGAAAGGTT+GGG - chr7.3:18624591-18624610 MS.gene017798:CDS 40.0%
TAGCTTTCACTTGCAAAGCT+TGG - chr7.3:18622600-18622619 MS.gene017798:intron 40.0%
TAGGAACGGAGCAAAACATA+GGG + chr7.3:18623639-18623658 None:intergenic 40.0%
TCGAACAAGGTTGTCAACAA+TGG + chr7.3:18622111-18622130 None:intergenic 40.0%
TCTAGGCTTATTCAATCACC+CGG + chr7.3:18623804-18623823 None:intergenic 40.0%
TGCATGAAGAGTTGTGTAAC+AGG - chr7.3:18622687-18622706 MS.gene017798:intron 40.0%
TGTTTCTTGGAGAAAGGTTG+GGG - chr7.3:18624592-18624611 MS.gene017798:CDS 40.0%
! ACAACTGCCAAACTTTTCCT+TGG + chr7.3:18621936-18621955 None:intergenic 40.0%
! AGTGTTGGAAATCTCTCACT+GGG - chr7.3:18622198-18622217 MS.gene017798:intron 40.0%
! ATTGAATCGGTTCTGTGTTC+AGG - chr7.3:18622739-18622758 MS.gene017798:intron 40.0%
!! GATGTTGAGCATTGGTGAAA+AGG + chr7.3:18621843-18621862 None:intergenic 40.0%
AAGCGAGTAATGGTCATTGG+TGG - chr7.3:18622026-18622045 MS.gene017798:CDS 45.0%
ACCTTTCTCCAAGAAACACC+AGG + chr7.3:18624590-18624609 None:intergenic 45.0%
ACGAAAGCTGGTGAGAAGTT+GGG - chr7.3:18624377-18624396 MS.gene017798:CDS 45.0%
AGGAACGGAGCAAAACATAG+GGG + chr7.3:18623638-18623657 None:intergenic 45.0%
ATCAGGCTCATAGGACTTGA+AGG + chr7.3:18622279-18622298 None:intergenic 45.0%
ATTGGTGGAGATGGATACTG+TGG - chr7.3:18622041-18622060 MS.gene017798:CDS 45.0%
CCAATGACCATTACTCGCTT+CGG + chr7.3:18622026-18622045 None:intergenic 45.0%
CCTGATGCTGTTGTCCATTT+CGG - chr7.3:18622293-18622312 MS.gene017798:intron 45.0%
CGCAAGAAAAGCCGTCTAAA+TGG + chr7.3:18621903-18621922 None:intergenic 45.0%
CGCGTACCCTTCAAAACTTT+AGG - chr7.3:18623943-18623962 MS.gene017798:CDS 45.0%
CTAGGAACGGAGCAAAACAT+AGG + chr7.3:18623640-18623659 None:intergenic 45.0%
CTAGTCAAGCTTGGGACAAT+GGG - chr7.3:18622440-18622459 MS.gene017798:intron 45.0%
CTGATGCTGTTGTCCATTTC+GGG - chr7.3:18622294-18622313 MS.gene017798:intron 45.0%
CTTGGGACAATGGGTGAATA+CGG - chr7.3:18622449-18622468 MS.gene017798:intron 45.0%
CTTTCACTTGCAAAGCTTGG+GGG - chr7.3:18622603-18622622 MS.gene017798:intron 45.0%
GACCGGTCTATCATAGAGTA+AGG + chr7.3:18622335-18622354 None:intergenic 45.0%
GCTTTCACTTGCAAAGCTTG+GGG - chr7.3:18622602-18622621 MS.gene017798:intron 45.0%
GGTCATCCACTCACTGTATA+TGG - chr7.3:18622770-18622789 MS.gene017798:intron 45.0%
GGTGTTTCTTGGAGAAAGGT+TGG - chr7.3:18624590-18624609 MS.gene017798:CDS 45.0%
GTAATGGTCATTGGTGGAGA+TGG - chr7.3:18622032-18622051 MS.gene017798:CDS 45.0%
GTGTATACACAGCTCTTGAC+CGG + chr7.3:18622352-18622371 None:intergenic 45.0%
TAACCCTAGAGTGGAGTTAG+AGG - chr7.3:18624427-18624446 MS.gene017798:CDS 45.0%
TACGAAAGCTGGTGAGAAGT+TGG - chr7.3:18624376-18624395 MS.gene017798:CDS 45.0%
TCTAGTCAAGCTTGGGACAA+TGG - chr7.3:18622439-18622458 MS.gene017798:intron 45.0%
TCTTGCGAGAACAGAAACCA+AGG - chr7.3:18621916-18621935 MS.gene017798:CDS 45.0%
TGAGAGAATCTAGTCCAAGC+TGG + chr7.3:18622148-18622167 None:intergenic 45.0%
TGATGCTGTTGTCCATTTCG+GGG - chr7.3:18622295-18622314 MS.gene017798:intron 45.0%
TGGAGATGGATACTGTGGTT+GGG - chr7.3:18622046-18622065 MS.gene017798:CDS 45.0%
TGTATATGGTAAAGGAGGCC+AGG - chr7.3:18622784-18622803 MS.gene017798:intron 45.0%
TTACCATCACTCACAACGGA+AGG - chr7.3:18622504-18622523 MS.gene017798:intron 45.0%
TTCTACAGTTTCAACTGGCC+AGG - chr7.3:18621962-18621981 MS.gene017798:CDS 45.0%
TTGCGGTTCAGTACAAAGAC+CGG - chr7.3:18624543-18624562 MS.gene017798:CDS 45.0%
! CAAGGGATTGGTATGTTACC+TGG + chr7.3:18622805-18622824 None:intergenic 45.0%
! CAGTGTTGGAAATCTCTCAC+TGG - chr7.3:18622197-18622216 MS.gene017798:intron 45.0%
! CGTCTTTTTGATCACCAGCT+TGG - chr7.3:18622131-18622150 MS.gene017798:CDS 45.0%
! GTATTGGTGAGGCTTCTTAG+TGG - chr7.3:18622954-18622973 MS.gene017798:intron 45.0%
! GTTTGAAGCGGAGAAAGTCA+AGG + chr7.3:18621805-18621824 None:intergenic 45.0%
! TCGCCAGAACTAGTTTGAAC+CGG + chr7.3:18621993-18622012 None:intergenic 45.0%
!! GAGCTAGCTTGCTTTGGATA+CGG + chr7.3:18622542-18622561 None:intergenic 45.0%
!! TCTAACTCCACTCTAGGGTT+AGG + chr7.3:18624428-18624447 None:intergenic 45.0%
!! TCTAGGGTTAGGCACTGATA+TGG + chr7.3:18624417-18624436 None:intergenic 45.0%
ACACTGAATGCGATCCTGGA+TGG + chr7.3:18622183-18622202 None:intergenic 50.0%
ATCAGTGCCTAACCCTAGAG+TGG - chr7.3:18624418-18624437 MS.gene017798:CDS 50.0%
CACACCAATTTCCTCCATCC+AGG - chr7.3:18622166-18622185 MS.gene017798:intron 50.0%
CCGAAATGGACAACAGCATC+AGG + chr7.3:18622296-18622315 None:intergenic 50.0%
CCGAAGCGAGTAATGGTCAT+TGG - chr7.3:18622023-18622042 MS.gene017798:CDS 50.0%
CGATCCTGGATGGAGGAAAT+TGG + chr7.3:18622173-18622192 None:intergenic 50.0%
CGGGCAACTGATCTGAATCA+AGG - chr7.3:18622629-18622648 MS.gene017798:intron 50.0%
CTTGCAAAGCTTGGGGGATT+CGG - chr7.3:18622609-18622628 MS.gene017798:intron 50.0%
GACAACAGCATCAGGCTCAT+AGG + chr7.3:18622288-18622307 None:intergenic 50.0%
GCCCTCCACCTTTCTAACAA+AGG - chr7.3:18622074-18622093 MS.gene017798:CDS 50.0%
GCCTGGTGTTTCTTGGAGAA+AGG - chr7.3:18624586-18624605 MS.gene017798:CDS 50.0%
GCTCCTCTAACTCCACTCTA+GGG + chr7.3:18624433-18624452 None:intergenic 50.0%
GTGGAGATGGATACTGTGGT+TGG - chr7.3:18622045-18622064 MS.gene017798:CDS 50.0%
TCCAACACTGAATGCGATCC+TGG + chr7.3:18622187-18622206 None:intergenic 50.0%
TCCAGGATCGCATTCAGTGT+TGG - chr7.3:18622183-18622202 MS.gene017798:intron 50.0%
TGAAGACTCGGAACTCTCCA+GGG + chr7.3:18624310-18624329 None:intergenic 50.0%
TGAGCTTGCCATTGCAAACC+CGG - chr7.3:18624280-18624299 MS.gene017798:CDS 50.0%
TGCGGTTCAGTACAAAGACC+GGG - chr7.3:18624544-18624563 MS.gene017798:CDS 50.0%
TGCTCCTCTAACTCCACTCT+AGG + chr7.3:18624434-18624453 None:intergenic 50.0%
TGTCCTTCCGTTGTGAGTGA+TGG + chr7.3:18622510-18622529 None:intergenic 50.0%
TTCTGTGTTCAGGCTGCTGT+TGG - chr7.3:18622749-18622768 MS.gene017798:intron 50.0%
TTGAAGACTCGGAACTCTCC+AGG + chr7.3:18624311-18624330 None:intergenic 50.0%
TTGCAAAGCTTGGGGGATTC+GGG - chr7.3:18622610-18622629 MS.gene017798:intron 50.0%
! CGCCAGAACTAGTTTGAACC+GGG + chr7.3:18621992-18622011 None:intergenic 50.0%
! GCCAGAACTAGTTTGAACCG+GGG + chr7.3:18621991-18622010 None:intergenic 50.0%
!! GCTGAGCTTGTTACGAAAGC+TGG - chr7.3:18624365-18624384 MS.gene017798:CDS 50.0%
ATTGCAAACCCGGCTAACCC+TGG - chr7.3:18624290-18624309 MS.gene017798:CDS 55.0%
CTGAATGCGATCCTGGATGG+AGG + chr7.3:18622180-18622199 None:intergenic 55.0%
GCCCCGGTTCAAACTAGTTC+TGG - chr7.3:18621987-18622006 MS.gene017798:CDS 55.0%
TAGTTTGAACCGGGGCTTCC+TGG + chr7.3:18621983-18622002 None:intergenic 55.0%
!! AGGGTTAGCCGGGTTTGCAA+TGG + chr7.3:18624291-18624310 None:intergenic 55.0%
CGGATCGCTGTTCCCCGAAA+TGG + chr7.3:18622310-18622329 None:intergenic 60.0%
TTCAACTGGCCAGGAAGCCC+CGG - chr7.3:18621971-18621990 MS.gene017798:CDS 60.0%
! CGGAACTCTCCAGGGTTAGC+CGG + chr7.3:18624302-18624321 None:intergenic 60.0%
!! GGAACTCTCCAGGGTTAGCC+GGG + chr7.3:18624301-18624320 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 18621774 18624640 18621774 ID=MS.gene017798
chr7.3 mRNA 18621774 18624640 18621774 ID=MS.gene017798.t1;Parent=MS.gene017798
chr7.3 exon 18623609 18624640 18623609 ID=MS.gene017798.t1.exon1;Parent=MS.gene017798.t1
chr7.3 CDS 18623609 18624640 18623609 ID=cds.MS.gene017798.t1;Parent=MS.gene017798.t1
chr7.3 exon 18621774 18622175 18621774 ID=MS.gene017798.t1.exon2;Parent=MS.gene017798.t1
chr7.3 CDS 18621774 18622175 18621774 ID=cds.MS.gene017798.t1;Parent=MS.gene017798.t1
Gene Sequence

>MS.gene017798

ATGGCTCAATTGCTATCATCTTCTTGCTCCTTGACTTTCTCCGCTTCAAACAAACCTTGTTTAAAACCTTTTCACCAATGCTCAACATCATTTTCTAACACGGTTGTTTTTGATAACTCCAAAAATCCATTTAGACGGCTTTTCTTGCGAGAACAGAAACCAAGGAAAAGTTTGGCAGTTGTAAATGCTTCTACAGTTTCAACTGGCCAGGAAGCCCCGGTTCAAACTAGTTCTGGCGACCCTTTTAAACCGAAGCGAGTAATGGTCATTGGTGGAGATGGATACTGTGGTTGGGCAACTGCCCTCCACCTTTCTAACAAAGGTTACGAGGTTGCCATTGTTGACAACCTTGTTCGACGTCTTTTTGATCACCAGCTTGGACTAGATTCTCTCACACCAATTTCCTCCATCCAGGATCGCATTCAGTGTTGGAAATCTCTCACTGGGAAAAGTATTGAGCTATACATTGGTGATATATGTGAGTTTGAGTTCTTATCCGAAACCTTCAAGTCCTATGAGCCTGATGCTGTTGTCCATTTCGGGGAACAGCGATCCGCTCCTTACTCTATGATAGACCGGTCAAGAGCTGTGTATACACAGCAAAACAATGTTGTCGGGACACTGAACGTGCTCTTTGCTATAAAAGAGTACAGAGAGGATTGTCATCTAGTCAAGCTTGGGACAATGGGTGAATACGGAACTCCAAATATTGATATTGAGGAAGGTTATATTACCATCACTCACAACGGAAGGACAGACACTTTGCCGTATCCAAAGCAAGCTAGCTCATTTTATCATTTAAGCAAGGTACATGATTCCCATAACATAGCTTTCACTTGCAAAGCTTGGGGGATTCGGGCAACTGATCTGAATCAAGGAGTGGTATATGGGGTAAGAACAGATGAGACTGCAATGCATGAAGAGTTGTGTAACAGGTTTGACTATGATGCAATATTTGGAACTGCATTGAATCGGTTCTGTGTTCAGGCTGCTGTTGGTCATCCACTCACTGTATATGGTAAAGGAGGCCAGGTAACATACCAATCCCTTGTTTATTTCTTATTGATAACTGATAAGTAGAACAGTGACTGTTTCCAATGGCAAAATCATAGAATTTTTGAATTTTTCAAACTTTTCGAACTTGGATGTGTTTATGTCATTACTGGTGCATAATTAAAGAGTATTGGTGAGGCTTCTTAGTGGTTAAAGAAAATTAACAATGACTATTAAAATATTCATCAAAAGTTTAATTACCTCGTAGAATACATTTTATAATAACCTGCGTTGACATTTACTTCCATTATTAACTTATTAAGCATATTAACCTGATCCAAAATTGTCGAAAAGAAAAACTGCTAAGGAATGCAGAAATCAAATCAAACACTGACTGCTACTTCATTGATGATTTGTTGACTACATCGTGACTTTCAATTTTTTACAGTTACAGCTAAGCAATCATTTTAGTGATGAAAATAATTAAACCATATAACTGCGGAAAATATGATGGCTAAAATTGAAAAAAAATACCTTTTTTTATGTGCATAGATTCTGAATCTATTTCTAAAAGATTTCATGCTTTCAATAGAGTAGTACCTCAAATGGAGTTTTTTGTCTCTTCATTTTATTGATCAATGTTAGTAATATCAATACTATATGAATTAATTTTTTTGAACACATCAGATATTTTTTTAGAAAATAGGCTTATTCAATCAACCGGTCCCTTAACTTCATTGATTGTCGCAATTTGGTCCCCTAACTATAATTTGTACCAATTTGGTCCCCTATGTTTTGCTTCGTTACTAGTTTTAGTCCTTTCTGGTAGTTTCTCTCAAAAAAACGTTAACTTATGTACCAATTTGGTCCCCTATGTTTTGCTCCGTTCCTAGTTTTAGTCCTTTCTGTTCACGTTTTTTTGAGAGAAACCAACAGAAAGGACTAAAACTAGTAACAGAGCAAAACATAGAGGACCAAATTGGTACAAATTATAGTTAGGGGACCAAATTGAGACAATCAATGAAGTTAAGGGACCGGGTGATTGAATAAGCCTAGAAAATAAGATTAAAAAAATATTTTTTGTGTGGAATAATGTTAAAAAAAAATGTGTTATTAATAGGAGAAGCACACATATAGCAAAATAAATGTAAGGCTTGATCTTCAATGAATAGGTTTCGCGTACCCTTCAAAACTTTAGGCGAAGATCTTTCAATCTAAGAGTTCTGTTTTCTATACTCAATTTATTGTTTAAATTACTTCTTGGATAGTCAGCATATTCAATATGGGTTTTTATTACCGTGAAATTCAATATGGTTTAGAAGTACAAGATGAGATTTACATACGAACATGGTGGATGCTGAAAAATTTGTTAATGGAAATGGCTACTACTAGTGTATAGATGGTAATGCAACAAGTATTCTTTGCCACTAATTAATTTTTTGCATGTTACTTGTGTGATTCACATGTTTCAGACTAGGGCCTTCCTTGACATAAGAGATACAGTTCAATGTGTTGAGCTTGCCATTGCAAACCCGGCTAACCCTGGAGAGTTCCGAGTCTTCAATCAATTTACTGAGCAATTTAAAGTGACTGAACTAGCTGAGCTTGTTACGAAAGCTGGTGAGAAGTTGGGCCTTGATGTGAAAACCATATCAGTGCCTAACCCTAGAGTGGAGTTAGAGGAGCATTATTACAACTGCAAAAACACTAAACTAGTTGATCTTGGACTCAAGCCACACTTTCTTTCAGATTCTCTCATTGATTCACTGCTTAACTTTGCGGTTCAGTACAAAGACCGGGTTGACACTATGCAAATTATGCCTGGTGTTTCTTGGAGAAAGGTTGGGGTCAAAACAAAAACTCTTTCATCCTAA

Protein sequence

>MS.gene017798.t1

MAQLLSSSCSLTFSASNKPCLKPFHQCSTSFSNTVVFDNSKNPFRRLFLREQKPRKSLAVVNASTVSTGQEAPVQTSSGDPFKPKRVMVIGGDGYCGWATALHLSNKGYEVAIVDNLVRRLFDHQLGLDSLTPISSIQDRIQCWKSLTGKSIELYIGDICEFEFLSETFKSYEPDAVVHFGEQRSAPYSMIDRSRAVYTQQNNVVGTLNVLFAIKEYREDCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRFDYDAIFGTALNRFCVQAAVGHPLTVYGKGGQTRAFLDIRDTVQCVELAIANPANPGEFRVFNQFTEQFKVTELAELVTKAGEKLGLDVKTISVPNPRVELEEHYYNCKNTKLVDLGLKPHFLSDSLIDSLLNFAVQYKDRVDTMQIMPGVSWRKVGVKTKTLSS