Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017798.t1 | XP_003625059.1 | 98.7 | 477 | 6 | 0 | 1 | 477 | 1 | 477 | 1.60E-278 | 968 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017798.t1 | O48917 | 77.3 | 481 | 101 | 4 | 1 | 477 | 1 | 477 | 7.2e-219 | 761.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017798.t1 | G7KRQ8 | 98.7 | 477 | 6 | 0 | 1 | 477 | 1 | 477 | 1.2e-278 | 968.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene051502 | MS.gene017798 | PPI |
MS.gene058467 | MS.gene017798 | PPI |
MS.gene017798 | MS.gene016107 | PPI |
MS.gene33101 | MS.gene017798 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017798.t1 | MTR_7g090510 | 98.742 | 477 | 6 | 0 | 1 | 477 | 1 | 477 | 0.0 | 988 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017798.t1 | AT4G33030 | 77.339 | 481 | 101 | 4 | 1 | 477 | 1 | 477 | 0.0 | 751 |
Find 122 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTGACTATGATGCAATATT+TGG | 0.140392 | 7.3:-18623682 | MS.gene017798:CDS |
CTGATGCTGTTGTCCATTTC+GGG | 0.173565 | 7.3:-18624098 | MS.gene017798:CDS |
ATTACTCGCTTCGGTTTAAA+AGG | 0.187741 | 7.3:+18624378 | None:intergenic |
CCTTCCTCAATATCAATATT+TGG | 0.201469 | 7.3:+18623916 | None:intergenic |
CCTGATGCTGTTGTCCATTT+CGG | 0.263402 | 7.3:-18624099 | MS.gene017798:CDS |
CTGAATCAAGGAGTGGTATA+TGG | 0.263921 | 7.3:-18623751 | MS.gene017798:CDS |
CGCAAGAAAAGCCGTCTAAA+TGG | 0.294684 | 7.3:+18624492 | None:intergenic |
AGCTTTCACTTGCAAAGCTT+GGG | 0.304992 | 7.3:-18623791 | MS.gene017798:CDS |
TAGTTTGAACCGGGGCTTCC+TGG | 0.305214 | 7.3:+18624412 | None:intergenic |
TGCAAGTGAAAGCTATGTTA+TGG | 0.335168 | 7.3:+18623800 | None:intergenic |
GGTCATCCACTCACTGTATA+TGG | 0.336464 | 7.3:-18623622 | MS.gene017798:CDS |
GTGTTTCTTGGAGAAAGGTT+GGG | 0.344780 | 7.3:-18621801 | MS.gene017798:CDS |
TGCATGAAGAGTTGTGTAAC+AGG | 0.360759 | 7.3:-18623705 | MS.gene017798:CDS |
TGATTCACTGCTTAACTTTG+CGG | 0.361307 | 7.3:-18621866 | MS.gene017798:CDS |
GCCCCGGTTCAAACTAGTTC+TGG | 0.371819 | 7.3:-18624405 | MS.gene017798:CDS |
CTCATAGGACTTGAAGGTTT+CGG | 0.374096 | 7.3:+18624122 | None:intergenic |
AAATTATGCCTGGTGTTTCT+TGG | 0.387099 | 7.3:-18621813 | MS.gene017798:CDS |
CGATCCTGGATGGAGGAAAT+TGG | 0.387488 | 7.3:+18624222 | None:intergenic |
TAACCCTAGAGTGGAGTTAG+AGG | 0.392922 | 7.3:-18621965 | MS.gene017798:CDS |
GCAAGTGAAAGCTATGTTAT+GGG | 0.394552 | 7.3:+18623801 | None:intergenic |
TCTAGGGTTAGGCACTGATA+TGG | 0.398330 | 7.3:+18621978 | None:intergenic |
AACACTAAACTAGTTGATCT+TGG | 0.398824 | 7.3:-18621922 | MS.gene017798:CDS |
TAAAATGAGCTAGCTTGCTT+TGG | 0.399512 | 7.3:+18623847 | None:intergenic |
TCCAACACTGAATGCGATCC+TGG | 0.403609 | 7.3:+18624208 | None:intergenic |
TTGAAGACTCGGAACTCTCC+AGG | 0.404275 | 7.3:+18622084 | None:intergenic |
GGTGTTTCTTGGAGAAAGGT+TGG | 0.408948 | 7.3:-18621802 | MS.gene017798:CDS |
CGGATCGCTGTTCCCCGAAA+TGG | 0.410099 | 7.3:+18624085 | None:intergenic |
TAGCTTTCACTTGCAAAGCT+TGG | 0.414968 | 7.3:-18623792 | MS.gene017798:CDS |
ATTGAATCGGTTCTGTGTTC+AGG | 0.420146 | 7.3:-18623653 | MS.gene017798:CDS |
ACAGAAACCAAGGAAAAGTT+TGG | 0.427205 | 7.3:-18624466 | MS.gene017798:CDS |
CCGAAATGGACAACAGCATC+AGG | 0.432925 | 7.3:+18624099 | None:intergenic |
CGGAACTCTCCAGGGTTAGC+CGG | 0.438324 | 7.3:+18622093 | None:intergenic |
ATCAGGCTCATAGGACTTGA+AGG | 0.444397 | 7.3:+18624116 | None:intergenic |
TGAATCAAGGAGTGGTATAT+GGG | 0.446459 | 7.3:-18623750 | MS.gene017798:CDS |
CTAGTCAAGCTTGGGACAAT+GGG | 0.448728 | 7.3:-18623952 | MS.gene017798:CDS |
TTCTGTGTTCAGGCTGCTGT+TGG | 0.451203 | 7.3:-18623643 | MS.gene017798:CDS |
CCTCGTAACCTTTGTTAGAA+AGG | 0.451936 | 7.3:+18624310 | None:intergenic |
CCAATGACCATTACTCGCTT+CGG | 0.452722 | 7.3:+18624369 | None:intergenic |
GATGTTGAGCATTGGTGAAA+AGG | 0.453224 | 7.3:+18624552 | None:intergenic |
TGTTTCTTGGAGAAAGGTTG+GGG | 0.454574 | 7.3:-18621800 | MS.gene017798:CDS |
GCCTGGTGTTTCTTGGAGAA+AGG | 0.462195 | 7.3:-18621806 | MS.gene017798:CDS |
TCGCCAGAACTAGTTTGAAC+CGG | 0.465526 | 7.3:+18624402 | None:intergenic |
TTCTACAGTTTCAACTGGCC+AGG | 0.466150 | 7.3:-18624430 | MS.gene017798:CDS |
TACGAAAGCTGGTGAGAAGT+TGG | 0.467785 | 7.3:-18622016 | MS.gene017798:CDS |
CTTGGGACAATGGGTGAATA+CGG | 0.477903 | 7.3:-18623943 | MS.gene017798:CDS |
AATGCTTCTACAGTTTCAAC+TGG | 0.486284 | 7.3:-18624435 | MS.gene017798:CDS |
GCTGAGCTTGTTACGAAAGC+TGG | 0.488739 | 7.3:-18622027 | MS.gene017798:CDS |
ACGAAAGCTGGTGAGAAGTT+GGG | 0.489003 | 7.3:-18622015 | MS.gene017798:CDS |
CAGTGTTGGAAATCTCTCAC+TGG | 0.491751 | 7.3:-18624195 | MS.gene017798:CDS |
TATTTGGAACTGCATTGAAT+CGG | 0.493431 | 7.3:-18623666 | MS.gene017798:CDS |
GACAACAGCATCAGGCTCAT+AGG | 0.494062 | 7.3:+18624107 | None:intergenic |
CAGTAAATTGATTGAAGACT+CGG | 0.495401 | 7.3:+18622073 | None:intergenic |
CCGAAGCGAGTAATGGTCAT+TGG | 0.499010 | 7.3:-18624369 | MS.gene017798:CDS |
CACAGCAAAACAATGTTGTC+GGG | 0.499040 | 7.3:-18624023 | MS.gene017798:CDS |
CACACCAATTTCCTCCATCC+AGG | 0.500313 | 7.3:-18624226 | MS.gene017798:CDS |
CGCCAGAACTAGTTTGAACC+GGG | 0.501193 | 7.3:+18624403 | None:intergenic |
AACCTTTGTTAGAAAGGTGG+AGG | 0.503426 | 7.3:+18624316 | None:intergenic |
GAGCTAGCTTGCTTTGGATA+CGG | 0.506316 | 7.3:+18623853 | None:intergenic |
GGAACTCTCCAGGGTTAGCC+GGG | 0.506813 | 7.3:+18622094 | None:intergenic |
TTGCGGTTCAGTACAAAGAC+CGG | 0.508555 | 7.3:-18621849 | MS.gene017798:CDS |
ATTGTCATCTAGTCAAGCTT+GGG | 0.509144 | 7.3:-18623960 | MS.gene017798:CDS |
CCAAATATTGATATTGAGGA+AGG | 0.509151 | 7.3:-18623916 | MS.gene017798:CDS |
GACCGGTCTATCATAGAGTA+AGG | 0.509269 | 7.3:+18624060 | None:intergenic |
AACTCCAAATATTGATATTG+AGG | 0.510539 | 7.3:-18623920 | MS.gene017798:CDS |
GTAATGGTCATTGGTGGAGA+TGG | 0.511804 | 7.3:-18624360 | MS.gene017798:CDS |
TCTAGTCAAGCTTGGGACAA+TGG | 0.511865 | 7.3:-18623953 | MS.gene017798:CDS |
GATTGTCATCTAGTCAAGCT+TGG | 0.511909 | 7.3:-18623961 | MS.gene017798:CDS |
CCACTCACTGTATATGGTAA+AGG | 0.514565 | 7.3:-18623616 | MS.gene017798:CDS |
TGAGCTTGCCATTGCAAACC+CGG | 0.515121 | 7.3:-18622112 | MS.gene017798:CDS |
TTCAACTGGCCAGGAAGCCC+CGG | 0.518120 | 7.3:-18624421 | MS.gene017798:CDS |
TGCTCCTCTAACTCCACTCT+AGG | 0.523420 | 7.3:+18621961 | None:intergenic |
CTCCTTACTCTATGATAGAC+CGG | 0.525170 | 7.3:-18624062 | MS.gene017798:CDS |
TTACTCGCTTCGGTTTAAAA+GGG | 0.531134 | 7.3:+18624379 | None:intergenic |
ATTGCAAACCCGGCTAACCC+TGG | 0.532722 | 7.3:-18622102 | MS.gene017798:CDS |
GTGTATACACAGCTCTTGAC+CGG | 0.533184 | 7.3:+18624043 | None:intergenic |
ACACAGCAAAACAATGTTGT+CGG | 0.535211 | 7.3:-18624024 | MS.gene017798:CDS |
TGTATATGGTAAAGGAGGCC+AGG | 0.535491 | 7.3:-18623608 | MS.gene017798:intron |
CGGGCAACTGATCTGAATCA+AGG | 0.540528 | 7.3:-18623763 | MS.gene017798:CDS |
TGGAGATGGATACTGTGGTT+GGG | 0.542951 | 7.3:-18624346 | MS.gene017798:CDS |
TAAACAAGGTTTGTTTGAAG+CGG | 0.550343 | 7.3:+18624578 | None:intergenic |
GCTTTCACTTGCAAAGCTTG+GGG | 0.550528 | 7.3:-18623790 | MS.gene017798:CDS |
GTGGAGATGGATACTGTGGT+TGG | 0.563462 | 7.3:-18624347 | MS.gene017798:CDS |
ACACTGAATGCGATCCTGGA+TGG | 0.563966 | 7.3:+18624212 | None:intergenic |
GCTCCTCTAACTCCACTCTA+GGG | 0.565035 | 7.3:+18621962 | None:intergenic |
TCCAGGATCGCATTCAGTGT+TGG | 0.567073 | 7.3:-18624209 | MS.gene017798:CDS |
GACACTATGCAAATTATGCC+TGG | 0.568071 | 7.3:-18621823 | MS.gene017798:CDS |
TGTCCTTCCGTTGTGAGTGA+TGG | 0.571830 | 7.3:+18623885 | None:intergenic |
AGGGTTAGCCGGGTTTGCAA+TGG | 0.573221 | 7.3:+18622104 | None:intergenic |
CGTAACCTTTGTTAGAAAGG+TGG | 0.578750 | 7.3:+18624313 | None:intergenic |
AAAAGTATTGAGCTATACAT+TGG | 0.580925 | 7.3:-18624171 | MS.gene017798:CDS |
TAGAAAATGATGTTGAGCAT+TGG | 0.583068 | 7.3:+18624544 | None:intergenic |
AAGCGAGTAATGGTCATTGG+TGG | 0.585308 | 7.3:-18624366 | MS.gene017798:CDS |
TCTAACTCCACTCTAGGGTT+AGG | 0.586318 | 7.3:+18621967 | None:intergenic |
AGTGTTGGAAATCTCTCACT+GGG | 0.586597 | 7.3:-18624194 | MS.gene017798:CDS |
CCTTTCTAACAAAGGTTACG+AGG | 0.587127 | 7.3:-18624310 | MS.gene017798:CDS |
CCTTTACCATATACAGTGAG+TGG | 0.594076 | 7.3:+18623616 | None:intergenic |
TGAAGACTCGGAACTCTCCA+GGG | 0.596954 | 7.3:+18622085 | None:intergenic |
GTTTGAAGCGGAGAAAGTCA+AGG | 0.597796 | 7.3:+18624590 | None:intergenic |
CTTTCACTTGCAAAGCTTGG+GGG | 0.598323 | 7.3:-18623789 | MS.gene017798:CDS |
TGAGAGAATCTAGTCCAAGC+TGG | 0.600491 | 7.3:+18624247 | None:intergenic |
GCCCTCCACCTTTCTAACAA+AGG | 0.602875 | 7.3:-18624318 | MS.gene017798:CDS |
TGTATCTCTTATGTCAAGGA+AGG | 0.605182 | 7.3:+18622146 | None:intergenic |
GAACTGTATCTCTTATGTCA+AGG | 0.608223 | 7.3:+18622142 | None:intergenic |
CTCACTGTATATGGTAAAGG+AGG | 0.608718 | 7.3:-18623613 | MS.gene017798:CDS |
ATCAGTGCCTAACCCTAGAG+TGG | 0.611638 | 7.3:-18621974 | MS.gene017798:CDS |
ACCTTTGTTAGAAAGGTGGA+GGG | 0.612052 | 7.3:+18624317 | None:intergenic |
AGAGAATCTGAAAGAAAGTG+TGG | 0.612228 | 7.3:+18621892 | None:intergenic |
TCGAACAAGGTTGTCAACAA+TGG | 0.614328 | 7.3:+18624284 | None:intergenic |
TGATGCTGTTGTCCATTTCG+GGG | 0.617432 | 7.3:-18624097 | MS.gene017798:CDS |
TTACCATCACTCACAACGGA+AGG | 0.617927 | 7.3:-18623888 | MS.gene017798:CDS |
CTGAATGCGATCCTGGATGG+AGG | 0.618262 | 7.3:+18624215 | None:intergenic |
TGCGGTTCAGTACAAAGACC+GGG | 0.625601 | 7.3:-18621848 | MS.gene017798:CDS |
TCTTGCGAGAACAGAAACCA+AGG | 0.641034 | 7.3:-18624476 | MS.gene017798:CDS |
ACCTTTCTCCAAGAAACACC+AGG | 0.645278 | 7.3:+18621805 | None:intergenic |
GTCTATCATAGAGTAAGGAG+CGG | 0.663083 | 7.3:+18624065 | None:intergenic |
GAATCAAGGAGTGGTATATG+GGG | 0.664294 | 7.3:-18623749 | MS.gene017798:CDS |
AACTGATCTGAATCAAGGAG+TGG | 0.668884 | 7.3:-18623758 | MS.gene017798:CDS |
TAATTTGCATAGTGTCAACC+CGG | 0.674273 | 7.3:+18621830 | None:intergenic |
ATTGGTGGAGATGGATACTG+TGG | 0.674313 | 7.3:-18624351 | MS.gene017798:CDS |
TATATTACCATCACTCACAA+CGG | 0.680492 | 7.3:-18623892 | MS.gene017798:CDS |
GCCAGAACTAGTTTGAACCG+GGG | 0.700751 | 7.3:+18624404 | None:intergenic |
TGCTATAAAAGAGTACAGAG+AGG | 0.711022 | 7.3:-18623983 | MS.gene017798:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAAAAAATGTGTTATTAAT+AGG | - | chr7.3:18623865-18623884 | MS.gene017798:CDS | 10.0% |
!!! | TTAAAAAAATATTTTTTGTG+TGG | - | chr7.3:18623832-18623851 | MS.gene017798:CDS | 10.0% |
!!! | TTTTTTTAATCTTATTTTCT+AGG | + | chr7.3:18623821-18623840 | None:intergenic | 10.0% |
!! | TATCAATAAGAAATAAACAA+GGG | + | chr7.3:18622822-18622841 | None:intergenic | 15.0% |
!! | TATGCTTAATAAGTTAATAA+TGG | + | chr7.3:18623074-18623093 | None:intergenic | 15.0% |
!! | TTATCAATAAGAAATAAACA+AGG | + | chr7.3:18622823-18622842 | None:intergenic | 15.0% |
!! | TTATTGTTTAAATTACTTCT+TGG | - | chr7.3:18624008-18624027 | MS.gene017798:CDS | 15.0% |
!!! | CAGATATTTTTTTAGAAAAT+AGG | - | chr7.3:18623451-18623470 | MS.gene017798:intron | 15.0% |
!! | AATTGGTACAAATTATAGTT+AGG | - | chr7.3:18623744-18623763 | MS.gene017798:CDS | 20.0% |
!! | AATTGGTACAAATTATAGTT+AGG | + | chr7.3:18623763-18623744 | None:intergenic | 20.0% |
!! | ACATGCAAAAAATTAATTAG+TGG | + | chr7.3:18624194-18624213 | None:intergenic | 20.0% |
!! | ATAATTAAACCATATAACTG+CGG | - | chr7.3:18623246-18623265 | MS.gene017798:intron | 20.0% |
!! | ATTATAAAATGTATTCTACG+AGG | + | chr7.3:18623030-18623049 | None:intergenic | 20.0% |
!! | ATTGGTACAAATTATAGTTA+GGG | - | chr7.3:18623745-18623764 | MS.gene017798:CDS | 20.0% |
!! | ATTGGTACAAATTATAGTTA+GGG | + | chr7.3:18623764-18623745 | None:intergenic | 20.0% |
!! | CATATAGCAAAATAAATGTA+AGG | - | chr7.3:18623897-18623916 | MS.gene017798:CDS | 20.0% |
!!! | AACTATAATTTGTACCAATT+TGG | - | chr7.3:18623528-18623547 | MS.gene017798:intron | 20.0% |
!!! | AACTATAATTTGTACCAATT+TGG | + | chr7.3:18623547-18623528 | None:intergenic | 20.0% |
!!! | GAAAAATTTGTTAATGGAAA+TGG | - | chr7.3:18624126-18624145 | MS.gene017798:CDS | 20.0% |
! | AACTCCAAATATTGATATTG+AGG | - | chr7.3:18622472-18622491 | MS.gene017798:intron | 25.0% |
! | ATAAGAAATAAACAAGGGAT+TGG | + | chr7.3:18622817-18622836 | None:intergenic | 25.0% |
! | ATAGTCAGCATATTCAATAT+GGG | - | chr7.3:18624031-18624050 | MS.gene017798:CDS | 25.0% |
! | CTAAACCATATTGAATTTCA+CGG | + | chr7.3:18624066-18624085 | None:intergenic | 25.0% |
! | GAATCTATGCACATAAAAAA+AGG | + | chr7.3:18623303-18623322 | None:intergenic | 25.0% |
! | TATTACCGTGAAATTCAATA+TGG | - | chr7.3:18624058-18624077 | MS.gene017798:CDS | 25.0% |
! | TTGGTACAAATTATAGTTAG+GGG | - | chr7.3:18623746-18623765 | MS.gene017798:CDS | 25.0% |
! | TTGGTACAAATTATAGTTAG+GGG | + | chr7.3:18623765-18623746 | None:intergenic | 25.0% |
! | TTTGACTATGATGCAATATT+TGG | - | chr7.3:18622710-18622729 | MS.gene017798:intron | 25.0% |
!! | AAATTCTATGATTTTGCCAT+TGG | + | chr7.3:18622871-18622890 | None:intergenic | 25.0% |
!! | CTCATTTTATCATTTAAGCA+AGG | - | chr7.3:18622559-18622578 | MS.gene017798:intron | 25.0% |
!! | GTTTTTCTTTTCGACAATTT+TGG | + | chr7.3:18623107-18623126 | None:intergenic | 25.0% |
!!! | AAAAGTATTGAGCTATACAT+TGG | - | chr7.3:18622221-18622240 | MS.gene017798:intron | 25.0% |
!!! | ATAATTAAAGAGTATTGGTG+AGG | - | chr7.3:18622943-18622962 | MS.gene017798:intron | 25.0% |
!!! | GATGCTGAAAAATTTGTTAA+TGG | - | chr7.3:18624120-18624139 | MS.gene017798:CDS | 25.0% |
!!! | TTTTTCAAACTTTTCGAACT+TGG | - | chr7.3:18622896-18622915 | MS.gene017798:intron | 25.0% |
AACACTAAACTAGTTGATCT+TGG | - | chr7.3:18624470-18624489 | MS.gene017798:CDS | 30.0% | |
AATAGGCTTATTCAATCAAC+CGG | - | chr7.3:18623468-18623487 | MS.gene017798:intron | 30.0% | |
ACTCCAAAAATCCATTTAGA+CGG | - | chr7.3:18621889-18621908 | MS.gene017798:CDS | 30.0% | |
ATGAGATTTACATACGAACA+TGG | - | chr7.3:18624095-18624114 | MS.gene017798:CDS | 30.0% | |
CAGTAAATTGATTGAAGACT+CGG | + | chr7.3:18624322-18624341 | None:intergenic | 30.0% | |
CCAAATATTGATATTGAGGA+AGG | - | chr7.3:18622476-18622495 | MS.gene017798:intron | 30.0% | |
CCTTCCTCAATATCAATATT+TGG | + | chr7.3:18622479-18622498 | None:intergenic | 30.0% | |
CGTTAACTTATGTACCAATT+TGG | - | chr7.3:18623611-18623630 | MS.gene017798:CDS | 30.0% | |
GAGACAATCAATGAAGTTAA+GGG | - | chr7.3:18623777-18623796 | MS.gene017798:CDS | 30.0% | |
GATAGTCAGCATATTCAATA+TGG | - | chr7.3:18624030-18624049 | MS.gene017798:CDS | 30.0% | |
TAGAAAATGATGTTGAGCAT+TGG | + | chr7.3:18621851-18621870 | None:intergenic | 30.0% | |
TAGTAACGAAGCAAAACATA+GGG | + | chr7.3:18623556-18623575 | None:intergenic | 30.0% | |
TATAACTGCGGAAAATATGA+TGG | - | chr7.3:18623258-18623277 | MS.gene017798:intron | 30.0% | |
TATATTACCATCACTCACAA+CGG | - | chr7.3:18622500-18622519 | MS.gene017798:intron | 30.0% | |
TCAAAAAAACGTGAACAGAA+AGG | + | chr7.3:18623670-18623689 | None:intergenic | 30.0% | |
TGAGACAATCAATGAAGTTA+AGG | - | chr7.3:18623776-18623795 | MS.gene017798:CDS | 30.0% | |
! | CTCAACATCATTTTCTAACA+CGG | - | chr7.3:18621854-18621873 | MS.gene017798:CDS | 30.0% |
! | CTTCATTGATTGTCTCAATT+TGG | + | chr7.3:18623773-18623792 | None:intergenic | 30.0% |
! | GGTGCATAATTAAAGAGTAT+TGG | - | chr7.3:18622938-18622957 | MS.gene017798:intron | 30.0% |
! | TAAACAAGGTTTGTTTGAAG+CGG | + | chr7.3:18621817-18621836 | None:intergenic | 30.0% |
! | TATTTGGAACTGCATTGAAT+CGG | - | chr7.3:18622726-18622745 | MS.gene017798:intron | 30.0% |
! | TCATATTTTCCGCAGTTATA+TGG | + | chr7.3:18623258-18623277 | None:intergenic | 30.0% |
!!! | TGGTGAAAAGGTTTTAAACA+AGG | + | chr7.3:18621831-18621850 | None:intergenic | 30.0% |
!!! | TTACTAGTTTTAGTCCTTTC+TGG | - | chr7.3:18623570-18623589 | MS.gene017798:intron | 30.0% |
AAATTATGCCTGGTGTTTCT+TGG | - | chr7.3:18624579-18624598 | MS.gene017798:CDS | 35.0% | |
AATCAATGAAGTTAAGGGAC+CGG | - | chr7.3:18623782-18623801 | MS.gene017798:CDS | 35.0% | |
AATCAATGAAGTTAAGGGAC+CGG | + | chr7.3:18623801-18623782 | None:intergenic | 35.0% | |
AATGCTTCTACAGTTTCAAC+TGG | - | chr7.3:18621957-18621976 | MS.gene017798:CDS | 35.0% | |
ACACAGCAAAACAATGTTGT+CGG | - | chr7.3:18622368-18622387 | MS.gene017798:intron | 35.0% | |
ACAGAAACCAAGGAAAAGTT+TGG | - | chr7.3:18621926-18621945 | MS.gene017798:CDS | 35.0% | |
AGAGAATCTGAAAGAAAGTG+TGG | + | chr7.3:18624503-18624522 | None:intergenic | 35.0% | |
AGATTTACATACGAACATGG+TGG | - | chr7.3:18624098-18624117 | MS.gene017798:CDS | 35.0% | |
AGGCTTGATCTTCAATGAAT+AGG | - | chr7.3:18623917-18623936 | MS.gene017798:CDS | 35.0% | |
AGTAACAGAGCAAAACATAG+AGG | - | chr7.3:18623717-18623736 | MS.gene017798:CDS | 35.0% | |
AGTAACGAAGCAAAACATAG+GGG | + | chr7.3:18623555-18623574 | None:intergenic | 35.0% | |
ATTACTCGCTTCGGTTTAAA+AGG | + | chr7.3:18622017-18622036 | None:intergenic | 35.0% | |
ATTGTCATCTAGTCAAGCTT+GGG | - | chr7.3:18622432-18622451 | MS.gene017798:intron | 35.0% | |
CAAAACATAGAGGACCAAAT+TGG | - | chr7.3:18623727-18623746 | MS.gene017798:CDS | 35.0% | |
CAATAGAGTAGTACCTCAAA+TGG | - | chr7.3:18623353-18623372 | MS.gene017798:intron | 35.0% | |
CTAGTAACGAAGCAAAACAT+AGG | + | chr7.3:18623557-18623576 | None:intergenic | 35.0% | |
GAAAGGACTAAAACTAGGAA+CGG | + | chr7.3:18623653-18623672 | None:intergenic | 35.0% | |
GAACAGAAAGGACTAAAACT+AGG | + | chr7.3:18623658-18623677 | None:intergenic | 35.0% | |
GAACTGTATCTCTTATGTCA+AGG | + | chr7.3:18624253-18624272 | None:intergenic | 35.0% | |
GAGACAAAAAACTCCATTTG+AGG | + | chr7.3:18623369-18623388 | None:intergenic | 35.0% | |
GATTCACATGTTTCAGACTA+GGG | - | chr7.3:18624223-18624242 | MS.gene017798:CDS | 35.0% | |
GCAAGTGAAAGCTATGTTAT+GGG | + | chr7.3:18622594-18622613 | None:intergenic | 35.0% | |
GCGACAATCAATGAAGTTAA+GGG | + | chr7.3:18623495-18623514 | None:intergenic | 35.0% | |
GGATGTGTTTATGTCATTAC+TGG | - | chr7.3:18622917-18622936 | MS.gene017798:intron | 35.0% | |
GTCGAAAAGAAAAACTGCTA+AGG | - | chr7.3:18623112-18623131 | MS.gene017798:intron | 35.0% | |
TGAATCAAGGAGTGGTATAT+GGG | - | chr7.3:18622642-18622661 | MS.gene017798:intron | 35.0% | |
TGATTCACATGTTTCAGACT+AGG | - | chr7.3:18624222-18624241 | MS.gene017798:CDS | 35.0% | |
TGATTCACTGCTTAACTTTG+CGG | - | chr7.3:18624526-18624545 | MS.gene017798:CDS | 35.0% | |
TGCAAGTGAAAGCTATGTTA+TGG | + | chr7.3:18622595-18622614 | None:intergenic | 35.0% | |
TGCGACAATCAATGAAGTTA+AGG | + | chr7.3:18623496-18623515 | None:intergenic | 35.0% | |
TGTATCTCTTATGTCAAGGA+AGG | + | chr7.3:18624249-18624268 | None:intergenic | 35.0% | |
TTACTCGCTTCGGTTTAAAA+GGG | + | chr7.3:18622016-18622035 | None:intergenic | 35.0% | |
TTTGAGAGAAACCAACAGAA+AGG | - | chr7.3:18623685-18623704 | MS.gene017798:CDS | 35.0% | |
TTTGAGAGAAACTACCAGAA+AGG | + | chr7.3:18623587-18623606 | None:intergenic | 35.0% | |
! | CTGATATGGTTTTCACATCA+AGG | + | chr7.3:18624403-18624422 | None:intergenic | 35.0% |
! | CTTCATTGATTGTCGCAATT+TGG | - | chr7.3:18623499-18623518 | MS.gene017798:intron | 35.0% |
! | CTTTTCGACAATTTTGGATC+AGG | + | chr7.3:18623101-18623120 | None:intergenic | 35.0% |
! | TAATTTGCATAGTGTCAACC+CGG | + | chr7.3:18624565-18624584 | None:intergenic | 35.0% |
! | TGCTATAAAAGAGTACAGAG+AGG | - | chr7.3:18622409-18622428 | MS.gene017798:intron | 35.0% |
! | TTTTAAACCGAAGCGAGTAA+TGG | - | chr7.3:18622016-18622035 | MS.gene017798:CDS | 35.0% |
!! | AAGCCGTCTAAATGGATTTT+TGG | + | chr7.3:18621895-18621914 | None:intergenic | 35.0% |
!! | ATCTTCGCCTAAAGTTTTGA+AGG | + | chr7.3:18623953-18623972 | None:intergenic | 35.0% |
!! | TAAAATGAGCTAGCTTGCTT+TGG | + | chr7.3:18622548-18622567 | None:intergenic | 35.0% |
!!! | CTAGTTTTAGTCCTTTCTGT+TGG | + | chr7.3:18623675-18623656 | None:intergenic | 35.0% |
!!! | TCTTCGCCTAAAGTTTTGAA+GGG | + | chr7.3:18623952-18623971 | None:intergenic | 35.0% |
AACCTTTGTTAGAAAGGTGG+AGG | + | chr7.3:18622079-18622098 | None:intergenic | 40.0% | |
AACTGATCTGAATCAAGGAG+TGG | - | chr7.3:18622634-18622653 | MS.gene017798:intron | 40.0% | |
ACCTTTGTTAGAAAGGTGGA+GGG | + | chr7.3:18622078-18622097 | None:intergenic | 40.0% | |
AGAACAGTGACTGTTTCCAA+TGG | - | chr7.3:18622852-18622871 | MS.gene017798:intron | 40.0% | |
AGCTTTCACTTGCAAAGCTT+GGG | - | chr7.3:18622601-18622620 | MS.gene017798:intron | 40.0% | |
ATCAATGAAGTTAAGGGACC+GGG | - | chr7.3:18623783-18623802 | MS.gene017798:CDS | 40.0% | |
ATGGAAGTAAATGTCAACGC+AGG | + | chr7.3:18623055-18623074 | None:intergenic | 40.0% | |
CAAAACATAGGGGACCAAAT+TGG | + | chr7.3:18623545-18623564 | None:intergenic | 40.0% | |
CACAGCAAAACAATGTTGTC+GGG | - | chr7.3:18622369-18622388 | MS.gene017798:intron | 40.0% | |
CCACTCACTGTATATGGTAA+AGG | - | chr7.3:18622776-18622795 | MS.gene017798:intron | 40.0% | |
CCTCGTAACCTTTGTTAGAA+AGG | + | chr7.3:18622085-18622104 | None:intergenic | 40.0% | |
CCTTTACCATATACAGTGAG+TGG | + | chr7.3:18622779-18622798 | None:intergenic | 40.0% | |
CCTTTCTAACAAAGGTTACG+AGG | - | chr7.3:18622082-18622101 | MS.gene017798:CDS | 40.0% | |
CGTAACCTTTGTTAGAAAGG+TGG | + | chr7.3:18622082-18622101 | None:intergenic | 40.0% | |
CTCACTGTATATGGTAAAGG+AGG | - | chr7.3:18622779-18622798 | MS.gene017798:intron | 40.0% | |
CTCATAGGACTTGAAGGTTT+CGG | + | chr7.3:18622273-18622292 | None:intergenic | 40.0% | |
CTCCTTACTCTATGATAGAC+CGG | - | chr7.3:18622330-18622349 | MS.gene017798:intron | 40.0% | |
CTGAATCAAGGAGTGGTATA+TGG | - | chr7.3:18622641-18622660 | MS.gene017798:intron | 40.0% | |
GAATCAAGGAGTGGTATATG+GGG | - | chr7.3:18622643-18622662 | MS.gene017798:intron | 40.0% | |
GACACTATGCAAATTATGCC+TGG | - | chr7.3:18624569-18624588 | MS.gene017798:CDS | 40.0% | |
GATCAAAAAGACGTCGAACA+AGG | + | chr7.3:18622124-18622143 | None:intergenic | 40.0% | |
GATTGTCATCTAGTCAAGCT+TGG | - | chr7.3:18622431-18622450 | MS.gene017798:intron | 40.0% | |
GGCTACTACTAGTGTATAGA+TGG | - | chr7.3:18624147-18624166 | MS.gene017798:CDS | 40.0% | |
GTCTATCATAGAGTAAGGAG+CGG | + | chr7.3:18622330-18622349 | None:intergenic | 40.0% | |
GTGTTTCTTGGAGAAAGGTT+GGG | - | chr7.3:18624591-18624610 | MS.gene017798:CDS | 40.0% | |
TAGCTTTCACTTGCAAAGCT+TGG | - | chr7.3:18622600-18622619 | MS.gene017798:intron | 40.0% | |
TAGGAACGGAGCAAAACATA+GGG | + | chr7.3:18623639-18623658 | None:intergenic | 40.0% | |
TCGAACAAGGTTGTCAACAA+TGG | + | chr7.3:18622111-18622130 | None:intergenic | 40.0% | |
TCTAGGCTTATTCAATCACC+CGG | + | chr7.3:18623804-18623823 | None:intergenic | 40.0% | |
TGCATGAAGAGTTGTGTAAC+AGG | - | chr7.3:18622687-18622706 | MS.gene017798:intron | 40.0% | |
TGTTTCTTGGAGAAAGGTTG+GGG | - | chr7.3:18624592-18624611 | MS.gene017798:CDS | 40.0% | |
! | ACAACTGCCAAACTTTTCCT+TGG | + | chr7.3:18621936-18621955 | None:intergenic | 40.0% |
! | AGTGTTGGAAATCTCTCACT+GGG | - | chr7.3:18622198-18622217 | MS.gene017798:intron | 40.0% |
! | ATTGAATCGGTTCTGTGTTC+AGG | - | chr7.3:18622739-18622758 | MS.gene017798:intron | 40.0% |
!! | GATGTTGAGCATTGGTGAAA+AGG | + | chr7.3:18621843-18621862 | None:intergenic | 40.0% |
AAGCGAGTAATGGTCATTGG+TGG | - | chr7.3:18622026-18622045 | MS.gene017798:CDS | 45.0% | |
ACCTTTCTCCAAGAAACACC+AGG | + | chr7.3:18624590-18624609 | None:intergenic | 45.0% | |
ACGAAAGCTGGTGAGAAGTT+GGG | - | chr7.3:18624377-18624396 | MS.gene017798:CDS | 45.0% | |
AGGAACGGAGCAAAACATAG+GGG | + | chr7.3:18623638-18623657 | None:intergenic | 45.0% | |
ATCAGGCTCATAGGACTTGA+AGG | + | chr7.3:18622279-18622298 | None:intergenic | 45.0% | |
ATTGGTGGAGATGGATACTG+TGG | - | chr7.3:18622041-18622060 | MS.gene017798:CDS | 45.0% | |
CCAATGACCATTACTCGCTT+CGG | + | chr7.3:18622026-18622045 | None:intergenic | 45.0% | |
CCTGATGCTGTTGTCCATTT+CGG | - | chr7.3:18622293-18622312 | MS.gene017798:intron | 45.0% | |
CGCAAGAAAAGCCGTCTAAA+TGG | + | chr7.3:18621903-18621922 | None:intergenic | 45.0% | |
CGCGTACCCTTCAAAACTTT+AGG | - | chr7.3:18623943-18623962 | MS.gene017798:CDS | 45.0% | |
CTAGGAACGGAGCAAAACAT+AGG | + | chr7.3:18623640-18623659 | None:intergenic | 45.0% | |
CTAGTCAAGCTTGGGACAAT+GGG | - | chr7.3:18622440-18622459 | MS.gene017798:intron | 45.0% | |
CTGATGCTGTTGTCCATTTC+GGG | - | chr7.3:18622294-18622313 | MS.gene017798:intron | 45.0% | |
CTTGGGACAATGGGTGAATA+CGG | - | chr7.3:18622449-18622468 | MS.gene017798:intron | 45.0% | |
CTTTCACTTGCAAAGCTTGG+GGG | - | chr7.3:18622603-18622622 | MS.gene017798:intron | 45.0% | |
GACCGGTCTATCATAGAGTA+AGG | + | chr7.3:18622335-18622354 | None:intergenic | 45.0% | |
GCTTTCACTTGCAAAGCTTG+GGG | - | chr7.3:18622602-18622621 | MS.gene017798:intron | 45.0% | |
GGTCATCCACTCACTGTATA+TGG | - | chr7.3:18622770-18622789 | MS.gene017798:intron | 45.0% | |
GGTGTTTCTTGGAGAAAGGT+TGG | - | chr7.3:18624590-18624609 | MS.gene017798:CDS | 45.0% | |
GTAATGGTCATTGGTGGAGA+TGG | - | chr7.3:18622032-18622051 | MS.gene017798:CDS | 45.0% | |
GTGTATACACAGCTCTTGAC+CGG | + | chr7.3:18622352-18622371 | None:intergenic | 45.0% | |
TAACCCTAGAGTGGAGTTAG+AGG | - | chr7.3:18624427-18624446 | MS.gene017798:CDS | 45.0% | |
TACGAAAGCTGGTGAGAAGT+TGG | - | chr7.3:18624376-18624395 | MS.gene017798:CDS | 45.0% | |
TCTAGTCAAGCTTGGGACAA+TGG | - | chr7.3:18622439-18622458 | MS.gene017798:intron | 45.0% | |
TCTTGCGAGAACAGAAACCA+AGG | - | chr7.3:18621916-18621935 | MS.gene017798:CDS | 45.0% | |
TGAGAGAATCTAGTCCAAGC+TGG | + | chr7.3:18622148-18622167 | None:intergenic | 45.0% | |
TGATGCTGTTGTCCATTTCG+GGG | - | chr7.3:18622295-18622314 | MS.gene017798:intron | 45.0% | |
TGGAGATGGATACTGTGGTT+GGG | - | chr7.3:18622046-18622065 | MS.gene017798:CDS | 45.0% | |
TGTATATGGTAAAGGAGGCC+AGG | - | chr7.3:18622784-18622803 | MS.gene017798:intron | 45.0% | |
TTACCATCACTCACAACGGA+AGG | - | chr7.3:18622504-18622523 | MS.gene017798:intron | 45.0% | |
TTCTACAGTTTCAACTGGCC+AGG | - | chr7.3:18621962-18621981 | MS.gene017798:CDS | 45.0% | |
TTGCGGTTCAGTACAAAGAC+CGG | - | chr7.3:18624543-18624562 | MS.gene017798:CDS | 45.0% | |
! | CAAGGGATTGGTATGTTACC+TGG | + | chr7.3:18622805-18622824 | None:intergenic | 45.0% |
! | CAGTGTTGGAAATCTCTCAC+TGG | - | chr7.3:18622197-18622216 | MS.gene017798:intron | 45.0% |
! | CGTCTTTTTGATCACCAGCT+TGG | - | chr7.3:18622131-18622150 | MS.gene017798:CDS | 45.0% |
! | GTATTGGTGAGGCTTCTTAG+TGG | - | chr7.3:18622954-18622973 | MS.gene017798:intron | 45.0% |
! | GTTTGAAGCGGAGAAAGTCA+AGG | + | chr7.3:18621805-18621824 | None:intergenic | 45.0% |
! | TCGCCAGAACTAGTTTGAAC+CGG | + | chr7.3:18621993-18622012 | None:intergenic | 45.0% |
!! | GAGCTAGCTTGCTTTGGATA+CGG | + | chr7.3:18622542-18622561 | None:intergenic | 45.0% |
!! | TCTAACTCCACTCTAGGGTT+AGG | + | chr7.3:18624428-18624447 | None:intergenic | 45.0% |
!! | TCTAGGGTTAGGCACTGATA+TGG | + | chr7.3:18624417-18624436 | None:intergenic | 45.0% |
ACACTGAATGCGATCCTGGA+TGG | + | chr7.3:18622183-18622202 | None:intergenic | 50.0% | |
ATCAGTGCCTAACCCTAGAG+TGG | - | chr7.3:18624418-18624437 | MS.gene017798:CDS | 50.0% | |
CACACCAATTTCCTCCATCC+AGG | - | chr7.3:18622166-18622185 | MS.gene017798:intron | 50.0% | |
CCGAAATGGACAACAGCATC+AGG | + | chr7.3:18622296-18622315 | None:intergenic | 50.0% | |
CCGAAGCGAGTAATGGTCAT+TGG | - | chr7.3:18622023-18622042 | MS.gene017798:CDS | 50.0% | |
CGATCCTGGATGGAGGAAAT+TGG | + | chr7.3:18622173-18622192 | None:intergenic | 50.0% | |
CGGGCAACTGATCTGAATCA+AGG | - | chr7.3:18622629-18622648 | MS.gene017798:intron | 50.0% | |
CTTGCAAAGCTTGGGGGATT+CGG | - | chr7.3:18622609-18622628 | MS.gene017798:intron | 50.0% | |
GACAACAGCATCAGGCTCAT+AGG | + | chr7.3:18622288-18622307 | None:intergenic | 50.0% | |
GCCCTCCACCTTTCTAACAA+AGG | - | chr7.3:18622074-18622093 | MS.gene017798:CDS | 50.0% | |
GCCTGGTGTTTCTTGGAGAA+AGG | - | chr7.3:18624586-18624605 | MS.gene017798:CDS | 50.0% | |
GCTCCTCTAACTCCACTCTA+GGG | + | chr7.3:18624433-18624452 | None:intergenic | 50.0% | |
GTGGAGATGGATACTGTGGT+TGG | - | chr7.3:18622045-18622064 | MS.gene017798:CDS | 50.0% | |
TCCAACACTGAATGCGATCC+TGG | + | chr7.3:18622187-18622206 | None:intergenic | 50.0% | |
TCCAGGATCGCATTCAGTGT+TGG | - | chr7.3:18622183-18622202 | MS.gene017798:intron | 50.0% | |
TGAAGACTCGGAACTCTCCA+GGG | + | chr7.3:18624310-18624329 | None:intergenic | 50.0% | |
TGAGCTTGCCATTGCAAACC+CGG | - | chr7.3:18624280-18624299 | MS.gene017798:CDS | 50.0% | |
TGCGGTTCAGTACAAAGACC+GGG | - | chr7.3:18624544-18624563 | MS.gene017798:CDS | 50.0% | |
TGCTCCTCTAACTCCACTCT+AGG | + | chr7.3:18624434-18624453 | None:intergenic | 50.0% | |
TGTCCTTCCGTTGTGAGTGA+TGG | + | chr7.3:18622510-18622529 | None:intergenic | 50.0% | |
TTCTGTGTTCAGGCTGCTGT+TGG | - | chr7.3:18622749-18622768 | MS.gene017798:intron | 50.0% | |
TTGAAGACTCGGAACTCTCC+AGG | + | chr7.3:18624311-18624330 | None:intergenic | 50.0% | |
TTGCAAAGCTTGGGGGATTC+GGG | - | chr7.3:18622610-18622629 | MS.gene017798:intron | 50.0% | |
! | CGCCAGAACTAGTTTGAACC+GGG | + | chr7.3:18621992-18622011 | None:intergenic | 50.0% |
! | GCCAGAACTAGTTTGAACCG+GGG | + | chr7.3:18621991-18622010 | None:intergenic | 50.0% |
!! | GCTGAGCTTGTTACGAAAGC+TGG | - | chr7.3:18624365-18624384 | MS.gene017798:CDS | 50.0% |
ATTGCAAACCCGGCTAACCC+TGG | - | chr7.3:18624290-18624309 | MS.gene017798:CDS | 55.0% | |
CTGAATGCGATCCTGGATGG+AGG | + | chr7.3:18622180-18622199 | None:intergenic | 55.0% | |
GCCCCGGTTCAAACTAGTTC+TGG | - | chr7.3:18621987-18622006 | MS.gene017798:CDS | 55.0% | |
TAGTTTGAACCGGGGCTTCC+TGG | + | chr7.3:18621983-18622002 | None:intergenic | 55.0% | |
!! | AGGGTTAGCCGGGTTTGCAA+TGG | + | chr7.3:18624291-18624310 | None:intergenic | 55.0% |
CGGATCGCTGTTCCCCGAAA+TGG | + | chr7.3:18622310-18622329 | None:intergenic | 60.0% | |
TTCAACTGGCCAGGAAGCCC+CGG | - | chr7.3:18621971-18621990 | MS.gene017798:CDS | 60.0% | |
! | CGGAACTCTCCAGGGTTAGC+CGG | + | chr7.3:18624302-18624321 | None:intergenic | 60.0% |
!! | GGAACTCTCCAGGGTTAGCC+GGG | + | chr7.3:18624301-18624320 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.3 | gene | 18621774 | 18624640 | 18621774 | ID=MS.gene017798 |
chr7.3 | mRNA | 18621774 | 18624640 | 18621774 | ID=MS.gene017798.t1;Parent=MS.gene017798 |
chr7.3 | exon | 18623609 | 18624640 | 18623609 | ID=MS.gene017798.t1.exon1;Parent=MS.gene017798.t1 |
chr7.3 | CDS | 18623609 | 18624640 | 18623609 | ID=cds.MS.gene017798.t1;Parent=MS.gene017798.t1 |
chr7.3 | exon | 18621774 | 18622175 | 18621774 | ID=MS.gene017798.t1.exon2;Parent=MS.gene017798.t1 |
chr7.3 | CDS | 18621774 | 18622175 | 18621774 | ID=cds.MS.gene017798.t1;Parent=MS.gene017798.t1 |
Gene Sequence |
Protein sequence |