Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018202.t1 | RHN50340.1 | 98 | 401 | 8 | 0 | 1 | 401 | 89 | 489 | 6.60E-225 | 789.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018202.t1 | P92983 | 61.5 | 403 | 152 | 3 | 1 | 400 | 96 | 498 | 2.7e-142 | 506.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018202.t1 | A0A072U662 | 98.0 | 401 | 8 | 0 | 1 | 401 | 89 | 489 | 4.8e-225 | 789.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene018202 | MS.gene71995 | PPI |
| MS.gene61281 | MS.gene018202 | PPI |
| MS.gene00318 | MS.gene018202 | PPI |
| MS.gene018202 | MS.gene036485 | PPI |
| MS.gene018202 | MS.gene035333 | PPI |
| MS.gene72354 | MS.gene018202 | PPI |
| MS.gene011574 | MS.gene018202 | PPI |
| MS.gene004578 | MS.gene018202 | PPI |
| MS.gene041559 | MS.gene018202 | PPI |
| MS.gene52423 | MS.gene018202 | PPI |
| MS.gene073368 | MS.gene018202 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018202.t1 | MTR_6g016640 | 98.005 | 401 | 8 | 0 | 1 | 401 | 89 | 489 | 0.0 | 830 |
| MS.gene018202.t1 | MTR_6g016635 | 98.005 | 401 | 8 | 0 | 1 | 401 | 89 | 489 | 0.0 | 830 |
| MS.gene018202.t1 | MTR_6g016650 | 96.758 | 401 | 13 | 0 | 1 | 401 | 89 | 489 | 0.0 | 822 |
| MS.gene018202.t1 | MTR_7g020820 | 79.104 | 402 | 83 | 1 | 1 | 401 | 90 | 491 | 0.0 | 682 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene018202.t1 | AT5G38710 | 60.349 | 401 | 156 | 3 | 1 | 398 | 75 | 475 | 0.0 | 511 |
| MS.gene018202.t1 | AT3G30775 | 61.538 | 403 | 152 | 3 | 1 | 400 | 96 | 498 | 1.05e-176 | 502 |
| MS.gene018202.t1 | AT3G30775 | 61.538 | 403 | 152 | 3 | 1 | 400 | 96 | 498 | 1.05e-176 | 502 |
| MS.gene018202.t1 | AT5G38710 | 60.204 | 392 | 153 | 3 | 1 | 389 | 75 | 466 | 1.28e-176 | 501 |
Find 64 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCTTGTGGTGTTAA+TGG | 0.140964 | 6.3:+12107683 | None:intergenic |
| CTGTCATGGACGTTGGAATA+TGG | 0.214648 | 6.3:-12110004 | None:intergenic |
| GGTTGTGATCGTAATCTTAA+AGG | 0.228265 | 6.3:-12109789 | MS.gene018202:CDS |
| TTACGTGGCATGCTTGTTTA+TGG | 0.238176 | 6.3:-12109837 | MS.gene018202:CDS |
| TCTTGTGGTGTTAATGGTTC+TGG | 0.257780 | 6.3:+12107689 | None:intergenic |
| GACAAAGTTGTTGTAATCTT+TGG | 0.266260 | 6.3:+12107642 | None:intergenic |
| AGTACATTGGCTGAGTCTTT+TGG | 0.274273 | 6.3:-12107368 | MS.gene018202:CDS |
| GGACTTGATTCTGAGAAAAT+TGG | 0.279493 | 6.3:+12107734 | None:intergenic |
| GATGATAATCCTATTGTGTT+TGG | 0.331772 | 6.3:-12107512 | MS.gene018202:CDS |
| GCAGCAAAAGCATATGAAAT+TGG | 0.349585 | 6.3:-12106688 | MS.gene018202:CDS |
| TTTCTTCAGCTCTTCTCAAT+AGG | 0.352369 | 6.3:+12106527 | None:intergenic |
| TGAAGAAAATAGAGGCCTTT+TGG | 0.353136 | 6.3:-12106512 | MS.gene018202:CDS |
| TGAATTGTTCCAAACACAAT+AGG | 0.356564 | 6.3:+12107503 | None:intergenic |
| ATGGGATTTAAGTTGGTTAG+AGG | 0.360764 | 6.3:-12107410 | MS.gene018202:CDS |
| TTGCTTGAGAAGTTTGCTAA+TGG | 0.363959 | 6.3:-12107278 | MS.gene018202:CDS |
| GTTAGCAAGTATATGCCATT+TGG | 0.380807 | 6.3:-12106574 | MS.gene018202:CDS |
| GTTGTGATCGTAATCTTAAA+GGG | 0.388070 | 6.3:-12109788 | MS.gene018202:CDS |
| TCATTTGGTTTGAGCAATGC+AGG | 0.402184 | 6.3:-12106604 | MS.gene018202:CDS |
| TTGCTGCTGGAAAGAGTATA+AGG | 0.405411 | 6.3:-12109878 | MS.gene018202:CDS |
| GAGAAGTTTGCTAATGGAAA+AGG | 0.409585 | 6.3:-12107272 | MS.gene018202:CDS |
| ATGTCAGATGCACTTTCATT+TGG | 0.412207 | 6.3:-12106619 | MS.gene018202:CDS |
| TTCCATGGTAAATTGAATGA+AGG | 0.441489 | 6.3:+12107770 | None:intergenic |
| GCAATCAAAATTGTTACAAA+CGG | 0.447102 | 6.3:-12109976 | MS.gene018202:CDS |
| TCTTCAATAGTATCATGAAT+TGG | 0.450449 | 6.3:+12107335 | None:intergenic |
| AATTAGAAACTTACAGAAGA+TGG | 0.452786 | 6.3:+12109729 | None:intergenic |
| AATTCCTATGGGATTTAAGT+TGG | 0.453707 | 6.3:-12107417 | MS.gene018202:CDS |
| TGTCATGGACGTTGGAATAT+GGG | 0.454609 | 6.3:-12110003 | None:intergenic |
| CAATCAAAATTGTTACAAAC+GGG | 0.455063 | 6.3:-12109975 | MS.gene018202:CDS |
| GCTACACACAACATTGAATC+AGG | 0.457514 | 6.3:-12107236 | MS.gene018202:intron |
| GTTGTGCAAATTCAAGTTTG+TGG | 0.466588 | 6.3:+12106650 | None:intergenic |
| GGAGAAGATGCTATTGCTGC+TGG | 0.477420 | 6.3:-12109891 | MS.gene018202:CDS |
| TGAAAATCACTTTCTTCTTG+TGG | 0.479035 | 6.3:+12107674 | None:intergenic |
| ACCATCTCAACTGGTCCAAA+TGG | 0.482748 | 6.3:+12106559 | None:intergenic |
| CTTGAATTTGCACAACTATG+TGG | 0.482939 | 6.3:-12106643 | MS.gene018202:CDS |
| ATAAGGTCTGTTAATGAAGC+TGG | 0.484228 | 6.3:-12109861 | MS.gene018202:CDS |
| AACTTATTTGAAAGATGCTA+AGG | 0.486569 | 6.3:-12107480 | MS.gene018202:CDS |
| AAAGCATATGAAATTGGAAT+GGG | 0.486854 | 6.3:-12106682 | MS.gene018202:CDS |
| GGTAGAGAGTCTTGTTTCCA+TGG | 0.489711 | 6.3:+12107755 | None:intergenic |
| TGTACAGAAAAGAGCTTGGA+AGG | 0.493267 | 6.3:-12106356 | MS.gene018202:intron |
| TAAGGCATAACCATCTCAAC+TGG | 0.497185 | 6.3:+12106550 | None:intergenic |
| AATCTTGAAAGATGCAGTTA+TGG | 0.507538 | 6.3:-12109952 | MS.gene018202:CDS |
| TGTTCAGCATCAACCAATAG+TGG | 0.510458 | 6.3:+12107596 | None:intergenic |
| TGAAGCAAACATGCCACTAT+TGG | 0.511802 | 6.3:-12107609 | MS.gene018202:CDS |
| ATTCTTTCTAGTAATGCCAT+TGG | 0.522940 | 6.3:+12107824 | None:intergenic |
| AGAAGAGCTGAAGAAAATAG+AGG | 0.524857 | 6.3:-12106520 | MS.gene018202:CDS |
| CATTTGGTTTGAGCAATGCA+GGG | 0.525718 | 6.3:-12106603 | MS.gene018202:CDS |
| TCAGCTCTTCTCAATAGGTA+AGG | 0.526405 | 6.3:+12106532 | None:intergenic |
| CAAATCCAGAAGCAGCCAAA+AGG | 0.529777 | 6.3:+12106497 | None:intergenic |
| GCCATTTGGACCAGTTGAGA+TGG | 0.538971 | 6.3:-12106560 | MS.gene018202:CDS |
| TCCATGGTAAATTGAATGAA+GGG | 0.543779 | 6.3:+12107771 | None:intergenic |
| AAAAGCATATGAAATTGGAA+TGG | 0.545661 | 6.3:-12106683 | MS.gene018202:CDS |
| TATGTGAAGTAATCAATAGC+TGG | 0.545894 | 6.3:+12107560 | None:intergenic |
| GAATAAGTGATCTTCTAAGA+TGG | 0.547341 | 6.3:-12107805 | MS.gene018202:CDS |
| ACCCTTCATTCAATTTACCA+TGG | 0.548501 | 6.3:-12107772 | MS.gene018202:CDS |
| GATTTGATAGACAACTCATA+AGG | 0.552477 | 6.3:-12106480 | MS.gene018202:intron |
| GTTAATGAAGCTGGCTTACG+TGG | 0.581537 | 6.3:-12109852 | MS.gene018202:CDS |
| AATCACTGCAATATGTCCAA+TGG | 0.585286 | 6.3:-12107840 | MS.gene018202:CDS |
| ATAGGACCTGTCATGGACGT+TGG | 0.588231 | 6.3:-12110011 | None:intergenic |
| CTAACCAACTTAAATCCCAT+AGG | 0.606330 | 6.3:+12107413 | None:intergenic |
| GAAGATGCACATGATAATGA+TGG | 0.618481 | 6.3:-12109810 | MS.gene018202:CDS |
| AAGTGATTTGCTAACATCAA+CGG | 0.622647 | 6.3:+12109755 | None:intergenic |
| TATGTCTACAGAAAGTACAT+TGG | 0.622655 | 6.3:-12107381 | MS.gene018202:CDS |
| TAGAAACTTACAGAAGATGG+AGG | 0.662988 | 6.3:+12109732 | None:intergenic |
| ACAGAAAAGAGCTTGGAAGG+AGG | 0.680297 | 6.3:-12106353 | MS.gene018202:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATTATTATTATTATTA+TGG | + | chr6.3:12107085-12107104 | None:intergenic | 0.0% |
| !!! | TAATAATAAATTAAATATTT+TGG | - | chr6.3:12107813-12107832 | MS.gene018202:CDS | 0.0% |
| !!! | ACATTTTCTTAAAATATTAT+CGG | + | chr6.3:12109246-12109265 | None:intergenic | 10.0% |
| !!! | TATTTTTTTTAAAGCAAAAT+TGG | - | chr6.3:12106854-12106873 | MS.gene018202:intron | 10.0% |
| !!! | TTATATTTTATACATAATGT+TGG | - | chr6.3:12108008-12108027 | MS.gene018202:intron | 10.0% |
| !! | TGTCTCAAAAATAATTAAAA+AGG | + | chr6.3:12109902-12109921 | None:intergenic | 15.0% |
| !! | TGTCTCATATTATATATTAT+TGG | - | chr6.3:12107613-12107632 | MS.gene018202:CDS | 15.0% |
| !!! | ATTGATTTTTTTTATGTGAT+AGG | - | chr6.3:12108449-12108468 | MS.gene018202:intron | 15.0% |
| !!! | TGAAATGTGTTTTAATATAA+AGG | - | chr6.3:12107040-12107059 | MS.gene018202:intron | 15.0% |
| !!! | TTGTACATTTTAATATGAAT+TGG | + | chr6.3:12108298-12108317 | None:intergenic | 15.0% |
| !! | AATAAAACTCTAGTAAGAAA+TGG | + | chr6.3:12108160-12108179 | None:intergenic | 20.0% |
| !! | ACATTTCACACAAAAAATAT+TGG | + | chr6.3:12107028-12107047 | None:intergenic | 20.0% |
| !! | AGATACATTAATTGAAATCT+TGG | + | chr6.3:12109582-12109601 | None:intergenic | 20.0% |
| !! | ATAAATGTAACCACATATAT+CGG | - | chr6.3:12109468-12109487 | MS.gene018202:intron | 20.0% |
| !! | ATCATTATTTCCTTAACTAT+TGG | + | chr6.3:12107166-12107185 | None:intergenic | 20.0% |
| !! | ATTAGATAGTTACATTCATT+AGG | - | chr6.3:12109123-12109142 | MS.gene018202:intron | 20.0% |
| !! | CATTTCACACAAAAAATATT+GGG | + | chr6.3:12107027-12107046 | None:intergenic | 20.0% |
| !! | TAATAATACAAAGTAGTTGA+TGG | + | chr6.3:12107277-12107296 | None:intergenic | 20.0% |
| !! | TATTATTATGGTGTAAATGA+GGG | + | chr6.3:12107073-12107092 | None:intergenic | 20.0% |
| !! | TCATTATTTCCTTAACTATT+GGG | + | chr6.3:12107165-12107184 | None:intergenic | 20.0% |
| !! | TCTTTAAATAATGATTGAAG+AGG | - | chr6.3:12106982-12107001 | MS.gene018202:intron | 20.0% |
| !! | TTAGATAGTTACATTCATTA+GGG | - | chr6.3:12109124-12109143 | MS.gene018202:intron | 20.0% |
| !! | TTATTATTATGGTGTAAATG+AGG | + | chr6.3:12107074-12107093 | None:intergenic | 20.0% |
| !!! | AAATTTGAGTTTGGTATTTT+TGG | - | chr6.3:12107706-12107725 | MS.gene018202:CDS | 20.0% |
| !!! | AGTATTAACTTTTATGATCA+TGG | - | chr6.3:12106645-12106664 | MS.gene018202:CDS | 20.0% |
| !!! | AGTGTTTAGAAATTAGATTT+TGG | - | chr6.3:12108090-12108109 | MS.gene018202:intron | 20.0% |
| !!! | CACTTTTCTAATTTTTTATG+TGG | - | chr6.3:12107133-12107152 | MS.gene018202:intron | 20.0% |
| !!! | GAAATTAGATTTTGGTATTT+TGG | - | chr6.3:12108098-12108117 | MS.gene018202:intron | 20.0% |
| !!! | TCAAAGTGTTTATACTAAAT+TGG | - | chr6.3:12108190-12108209 | MS.gene018202:intron | 20.0% |
| !!! | TGAATTTTTTTTGTTGTGTA+GGG | - | chr6.3:12109611-12109630 | MS.gene018202:intron | 20.0% |
| !!! | TGTTTTTGTTTAAAGAAAAG+AGG | - | chr6.3:12106713-12106732 | MS.gene018202:intron | 20.0% |
| !!! | TTGAATTTTTTTTGTTGTGT+AGG | - | chr6.3:12109610-12109629 | MS.gene018202:intron | 20.0% |
| !!! | TTTTTAAGTTGCAAAAATCT+TGG | - | chr6.3:12107565-12107584 | MS.gene018202:CDS | 20.0% |
| !!! | TTTTTCTCATACTGATTTTT+CGG | - | chr6.3:12109942-12109961 | MS.gene018202:CDS | 20.0% |
| ! | AAAGCATATGAAATTGGAAT+GGG | - | chr6.3:12109649-12109668 | MS.gene018202:intron | 25.0% |
| ! | AACTTATTTGAAAGATGCTA+AGG | - | chr6.3:12108851-12108870 | MS.gene018202:intron | 25.0% |
| ! | AATAAAGCTCATGTTAGAAA+TGG | + | chr6.3:12107960-12107979 | None:intergenic | 25.0% |
| ! | AATTAGAAACTTACAGAAGA+TGG | + | chr6.3:12106605-12106624 | None:intergenic | 25.0% |
| ! | ACCATTTCTAATGTAATTAG+AGG | - | chr6.3:12107758-12107777 | MS.gene018202:CDS | 25.0% |
| ! | ACCTCTAATTACATTAGAAA+TGG | + | chr6.3:12107762-12107781 | None:intergenic | 25.0% |
| ! | AGATTGACACTTCATATTAA+TGG | + | chr6.3:12109366-12109385 | None:intergenic | 25.0% |
| ! | ATAAGGGTTAATCAGTAAAT+TGG | - | chr6.3:12107729-12107748 | MS.gene018202:CDS | 25.0% |
| ! | CAATCAAAATTGTTACAAAC+GGG | - | chr6.3:12106356-12106375 | MS.gene018202:intron | 25.0% |
| ! | CATTATTTCCTTAACTATTG+GGG | + | chr6.3:12107164-12107183 | None:intergenic | 25.0% |
| ! | GAAAAAATTGGAATTCCTAT+GGG | - | chr6.3:12108903-12108922 | MS.gene018202:intron | 25.0% |
| ! | GATTGACACTTCATATTAAT+GGG | + | chr6.3:12109365-12109384 | None:intergenic | 25.0% |
| ! | GCAATCAAAATTGTTACAAA+CGG | - | chr6.3:12106355-12106374 | MS.gene018202:intron | 25.0% |
| ! | GCACATATATTTCAGATTTA+AGG | + | chr6.3:12109530-12109549 | None:intergenic | 25.0% |
| ! | GTGTCAAATGCAAAAAATTA+TGG | + | chr6.3:12108232-12108251 | None:intergenic | 25.0% |
| ! | TCTTCAATAGTATCATGAAT+TGG | + | chr6.3:12108999-12109018 | None:intergenic | 25.0% |
| ! | TGAAAAAATTGGAATTCCTA+TGG | - | chr6.3:12108902-12108921 | MS.gene018202:intron | 25.0% |
| ! | TGTATGTCTTGAAAAACATA+AGG | - | chr6.3:12107191-12107210 | MS.gene018202:intron | 25.0% |
| !! | AAAAGCATATGAAATTGGAA+TGG | - | chr6.3:12109648-12109667 | MS.gene018202:intron | 25.0% |
| !! | AGTGTTTAGAAATTTGAGTT+TGG | - | chr6.3:12107697-12107716 | MS.gene018202:CDS | 25.0% |
| !! | TGTTTAAAGAAAAGAGGTTT+TGG | - | chr6.3:12106719-12106738 | MS.gene018202:intron | 25.0% |
| !! | TTTTATGAACATTTTTGTGC+TGG | - | chr6.3:12106419-12106438 | MS.gene018202:intron | 25.0% |
| !!! | AGGTTTTGGTCAAATTAATT+TGG | - | chr6.3:12106733-12106752 | MS.gene018202:intron | 25.0% |
| !!! | AGTTTGGTATTTTTGGATAA+GGG | - | chr6.3:12107713-12107732 | MS.gene018202:CDS | 25.0% |
| !!! | ATTTTGGTATTTTGGACAAA+AGG | - | chr6.3:12108106-12108125 | MS.gene018202:intron | 25.0% |
| !!! | TGTTACTGTTTTAGACAAAA+TGG | - | chr6.3:12107910-12107929 | MS.gene018202:intron | 25.0% |
| !!! | TTTTGGTATTTTGGACAAAA+GGG | - | chr6.3:12108107-12108126 | MS.gene018202:intron | 25.0% |
| !!! | TTTTTTGTAGTGTGGTATAA+TGG | + | chr6.3:12108621-12108640 | None:intergenic | 25.0% |
| AATCTTGAAAGATGCAGTTA+TGG | - | chr6.3:12106379-12106398 | MS.gene018202:intron | 30.0% | |
| AATTCCTATGGGATTTAAGT+TGG | - | chr6.3:12108914-12108933 | MS.gene018202:intron | 30.0% | |
| GACAAAGTTGTTGTAATCTT+TGG | + | chr6.3:12108692-12108711 | None:intergenic | 30.0% | |
| GATGATAATCCTATTGTGTT+TGG | - | chr6.3:12108819-12108838 | MS.gene018202:intron | 30.0% | |
| GATTTGATAGACAACTCATA+AGG | - | chr6.3:12109851-12109870 | MS.gene018202:CDS | 30.0% | |
| GCACATGTTAAAACAAGTAT+AGG | - | chr6.3:12107213-12107232 | MS.gene018202:intron | 30.0% | |
| GTTGGCATTGTAACAAAAAT+TGG | - | chr6.3:12108062-12108081 | MS.gene018202:intron | 30.0% | |
| GTTGTGATCGTAATCTTAAA+GGG | - | chr6.3:12106543-12106562 | MS.gene018202:CDS | 30.0% | |
| TATGTGAAGTAATCAATAGC+TGG | + | chr6.3:12108774-12108793 | None:intergenic | 30.0% | |
| TCAGATGTTCATATATGTGT+CGG | + | chr6.3:12109210-12109229 | None:intergenic | 30.0% | |
| TCCATGGTAAATTGAATGAA+GGG | + | chr6.3:12108563-12108582 | None:intergenic | 30.0% | |
| TGAAAATCACTTTCTTCTTG+TGG | + | chr6.3:12108660-12108679 | None:intergenic | 30.0% | |
| TGAATTGTTCCAAACACAAT+AGG | + | chr6.3:12108831-12108850 | None:intergenic | 30.0% | |
| TGGCATTCTGTCTTAAAAAT+TGG | - | chr6.3:12107866-12107885 | MS.gene018202:intron | 30.0% | |
| TTCCATGGTAAATTGAATGA+AGG | + | chr6.3:12108564-12108583 | None:intergenic | 30.0% | |
| ! | ATTCTTTCTAGTAATGCCAT+TGG | + | chr6.3:12108510-12108529 | None:intergenic | 30.0% |
| ! | ATTTTGTACAGAAAAGAGCT+TGG | - | chr6.3:12109971-12109990 | MS.gene018202:CDS | 30.0% |
| ! | GAATAAGTGATCTTCTAAGA+TGG | - | chr6.3:12108526-12108545 | MS.gene018202:intron | 30.0% |
| ! | TATGTCTACAGAAAGTACAT+TGG | - | chr6.3:12108950-12108969 | MS.gene018202:intron | 30.0% |
| !! | AAGTGATTTGCTAACATCAA+CGG | + | chr6.3:12106579-12106598 | None:intergenic | 30.0% |
| !! | ATGGCTTTCTATTTCTGAAA+GGG | + | chr6.3:12107258-12107277 | None:intergenic | 30.0% |
| !! | TTTCTATTTCTGAAAGGGAT+TGG | + | chr6.3:12107253-12107272 | None:intergenic | 30.0% |
| !! | TTTTTGTTGTGTAGGGAAAT+TGG | - | chr6.3:12109618-12109637 | MS.gene018202:intron | 30.0% |
| !!! | GAGTTTGGTATTTTTGGATA+AGG | - | chr6.3:12107712-12107731 | MS.gene018202:CDS | 30.0% |
| AACAACATGTTCGTACTCAT+TGG | - | chr6.3:12108261-12108280 | MS.gene018202:intron | 35.0% | |
| AACCACATTGTACTTCAAGT+AGG | + | chr6.3:12107847-12107866 | None:intergenic | 35.0% | |
| AAGTCTGATTCCGATATATG+TGG | + | chr6.3:12109481-12109500 | None:intergenic | 35.0% | |
| AATCACTGCAATATGTCCAA+TGG | - | chr6.3:12108491-12108510 | MS.gene018202:intron | 35.0% | |
| ACACAAGCTGCTGAAAAAAT+TGG | - | chr6.3:12108891-12108910 | MS.gene018202:intron | 35.0% | |
| ACATTGTACTTCAAGTAGGT+GGG | + | chr6.3:12107843-12107862 | None:intergenic | 35.0% | |
| ACCCTTCATTCAATTTACCA+TGG | - | chr6.3:12108559-12108578 | MS.gene018202:intron | 35.0% | |
| AGAAGAGCTGAAGAAAATAG+AGG | - | chr6.3:12109811-12109830 | MS.gene018202:CDS | 35.0% | |
| ATAAGGTCTGTTAATGAAGC+TGG | - | chr6.3:12106470-12106489 | MS.gene018202:intron | 35.0% | |
| ATGTCAGATGCACTTTCATT+TGG | - | chr6.3:12109712-12109731 | MS.gene018202:intron | 35.0% | |
| CTAACCAACTTAAATCCCAT+AGG | + | chr6.3:12108921-12108940 | None:intergenic | 35.0% | |
| CTTGAATTTGCACAACTATG+TGG | - | chr6.3:12109688-12109707 | MS.gene018202:intron | 35.0% | |
| GACATTGAGTCATATATCGT+TGG | - | chr6.3:12107669-12107688 | MS.gene018202:CDS | 35.0% | |
| GGTTGTGATCGTAATCTTAA+AGG | - | chr6.3:12106542-12106561 | MS.gene018202:CDS | 35.0% | |
| GTGATGAGTATGAATTGAGT+TGG | - | chr6.3:12107449-12107468 | MS.gene018202:CDS | 35.0% | |
| GTTAGCAAGTATATGCCATT+TGG | - | chr6.3:12109757-12109776 | MS.gene018202:CDS | 35.0% | |
| TACTTGAAGTACAATGTGGT+TGG | - | chr6.3:12107846-12107865 | MS.gene018202:CDS | 35.0% | |
| TAGAAACTTACAGAAGATGG+AGG | + | chr6.3:12106602-12106621 | None:intergenic | 35.0% | |
| TCAAAAATCGAATTGCGTGA+AGG | + | chr6.3:12108397-12108416 | None:intergenic | 35.0% | |
| TTTCTTCAGCTCTTCTCAAT+AGG | + | chr6.3:12109807-12109826 | None:intergenic | 35.0% | |
| ! | CTTTCTTCTTGTGGTGTTAA+TGG | + | chr6.3:12108651-12108670 | None:intergenic | 35.0% |
| ! | GAAGATGCACATGATAATGA+TGG | - | chr6.3:12106521-12106540 | MS.gene018202:CDS | 35.0% |
| ! | GCAGCAAAAGCATATGAAAT+TGG | - | chr6.3:12109643-12109662 | MS.gene018202:intron | 35.0% |
| ! | GGACTTGATTCTGAGAAAAT+TGG | + | chr6.3:12108600-12108619 | None:intergenic | 35.0% |
| ! | GTTGTGCAAATTCAAGTTTG+TGG | + | chr6.3:12109684-12109703 | None:intergenic | 35.0% |
| ! | TGAAGAAAATAGAGGCCTTT+TGG | - | chr6.3:12109819-12109838 | MS.gene018202:CDS | 35.0% |
| ! | TTAAACTAGTTTGTGCCTCA+TGG | - | chr6.3:12107338-12107357 | MS.gene018202:CDS | 35.0% |
| !! | AACGTGTGTGTTTTATTGTG+AGG | - | chr6.3:12107398-12107417 | MS.gene018202:CDS | 35.0% |
| !! | ACGCAATTCGATTTTTGAAG+TGG | - | chr6.3:12108399-12108418 | MS.gene018202:intron | 35.0% |
| !! | ATGGGATTTAAGTTGGTTAG+AGG | - | chr6.3:12108921-12108940 | MS.gene018202:intron | 35.0% |
| !! | GAGAAGTTTGCTAATGGAAA+AGG | - | chr6.3:12109059-12109078 | MS.gene018202:intron | 35.0% |
| !! | GATGGCTTTCTATTTCTGAA+AGG | + | chr6.3:12107259-12107278 | None:intergenic | 35.0% |
| !! | TTGCTTGAGAAGTTTGCTAA+TGG | - | chr6.3:12109053-12109072 | MS.gene018202:intron | 35.0% |
| !!! | GTTCTGGTTTTTTTGTAGTG+TGG | + | chr6.3:12108629-12108648 | None:intergenic | 35.0% |
| AAAATCGAATTGCGTGAAGG+TGG | + | chr6.3:12108394-12108413 | None:intergenic | 40.0% | |
| AACCACATTGTCCTTAAGCT+AGG | + | chr6.3:12107644-12107663 | None:intergenic | 40.0% | |
| ACATTGTCCTTAAGCTAGGT+GGG | + | chr6.3:12107640-12107659 | None:intergenic | 40.0% | |
| AGAAGTAGCATGACTTGAAC+TGG | + | chr6.3:12107528-12107547 | None:intergenic | 40.0% | |
| ATTGTACTTCAAGTAGGTGG+GGG | + | chr6.3:12107841-12107860 | None:intergenic | 40.0% | |
| CACATTGTACTTCAAGTAGG+TGG | + | chr6.3:12107844-12107863 | None:intergenic | 40.0% | |
| CACCTACTTGAAGTACAATG+TGG | - | chr6.3:12107842-12107861 | MS.gene018202:CDS | 40.0% | |
| CATTGTACTTCAAGTAGGTG+GGG | + | chr6.3:12107842-12107861 | None:intergenic | 40.0% | |
| CGTATAATGTAGCGTGGAAA+TGG | - | chr6.3:12106757-12106776 | MS.gene018202:intron | 40.0% | |
| GCTACACACAACATTGAATC+AGG | - | chr6.3:12109095-12109114 | MS.gene018202:intron | 40.0% | |
| GGGTTCATTAGTACGTAGTT+TGG | - | chr6.3:12108127-12108146 | MS.gene018202:intron | 40.0% | |
| TAAGGCATAACCATCTCAAC+TGG | + | chr6.3:12109784-12109803 | None:intergenic | 40.0% | |
| TAGCTTAAGGACAATGTGGT+TGG | - | chr6.3:12107643-12107662 | MS.gene018202:CDS | 40.0% | |
| TCAGCTCTTCTCAATAGGTA+AGG | + | chr6.3:12109802-12109821 | None:intergenic | 40.0% | |
| TCTTGGAATCATGTGACAGA+CGG | - | chr6.3:12107582-12107601 | MS.gene018202:CDS | 40.0% | |
| TGAAGCAAACATGCCACTAT+TGG | - | chr6.3:12108722-12108741 | MS.gene018202:intron | 40.0% | |
| TGTACAGAAAAGAGCTTGGA+AGG | - | chr6.3:12109975-12109994 | MS.gene018202:CDS | 40.0% | |
| TGTTCAGCATCAACCAATAG+TGG | + | chr6.3:12108738-12108757 | None:intergenic | 40.0% | |
| TGTTCGTACTCATTGGATCA+AGG | - | chr6.3:12108268-12108287 | MS.gene018202:intron | 40.0% | |
| TTACGTGGCATGCTTGTTTA+TGG | - | chr6.3:12106494-12106513 | MS.gene018202:CDS | 40.0% | |
| TTTGGTCGTATAATGTAGCG+TGG | - | chr6.3:12106751-12106770 | MS.gene018202:intron | 40.0% | |
| ! | ATGGTTTAGTTGTGGGTTGT+GGG | - | chr6.3:12107357-12107376 | MS.gene018202:CDS | 40.0% |
| ! | TCTTGTGGTGTTAATGGTTC+TGG | + | chr6.3:12108645-12108664 | None:intergenic | 40.0% |
| ! | TTGCTGCTGGAAAGAGTATA+AGG | - | chr6.3:12106453-12106472 | MS.gene018202:intron | 40.0% |
| ! | TTTCAGATTTAAGGCGTGTC+TGG | + | chr6.3:12109521-12109540 | None:intergenic | 40.0% |
| !! | AGTACATTGGCTGAGTCTTT+TGG | - | chr6.3:12108963-12108982 | MS.gene018202:intron | 40.0% |
| !! | CATTTGGTTTGAGCAATGCA+GGG | - | chr6.3:12109728-12109747 | MS.gene018202:intron | 40.0% |
| !! | TCATTTGGTTTGAGCAATGC+AGG | - | chr6.3:12109727-12109746 | MS.gene018202:intron | 40.0% |
| AACCACATTGTGCATCAGCT+AGG | + | chr6.3:12108045-12108064 | None:intergenic | 45.0% | |
| ACAGAAAAGAGCTTGGAAGG+AGG | - | chr6.3:12109978-12109997 | MS.gene018202:CDS | 45.0% | |
| ACATTGTGCATCAGCTAGGT+GGG | + | chr6.3:12108041-12108060 | None:intergenic | 45.0% | |
| ACCATCTCAACTGGTCCAAA+TGG | + | chr6.3:12109775-12109794 | None:intergenic | 45.0% | |
| CAAATCCAGAAGCAGCCAAA+AGG | + | chr6.3:12109837-12109856 | None:intergenic | 45.0% | |
| CAACCCACAACTAAACCATG+AGG | + | chr6.3:12107356-12107375 | None:intergenic | 45.0% | |
| CACATTGTCCTTAAGCTAGG+TGG | + | chr6.3:12107641-12107660 | None:intergenic | 45.0% | |
| CACCTAGCTTAAGGACAATG+TGG | - | chr6.3:12107639-12107658 | MS.gene018202:CDS | 45.0% | |
| GTCAGCACATTCATGACAGT+TGG | + | chr6.3:12108351-12108370 | None:intergenic | 45.0% | |
| GTGCCTCATGGTTTAGTTGT+GGG | - | chr6.3:12107350-12107369 | MS.gene018202:CDS | 45.0% | |
| GTGTTTGTGTTGTCGCATGT+CGG | - | chr6.3:12109331-12109350 | MS.gene018202:intron | 45.0% | |
| TAGCTGATGCACAATGTGGT+TGG | - | chr6.3:12108044-12108063 | MS.gene018202:intron | 45.0% | |
| TATTGGTCCCACCTAGCTTA+AGG | - | chr6.3:12107630-12107649 | MS.gene018202:CDS | 45.0% | |
| TGACACTGACACGTAGACAA+TGG | - | chr6.3:12109420-12109439 | MS.gene018202:intron | 45.0% | |
| TGTGCCTCATGGTTTAGTTG+TGG | - | chr6.3:12107349-12107368 | MS.gene018202:CDS | 45.0% | |
| TTGTACTTCAAGTAGGTGGG+GGG | + | chr6.3:12107840-12107859 | None:intergenic | 45.0% | |
| ! | CATGGTTTAGTTGTGGGTTG+TGG | - | chr6.3:12107356-12107375 | MS.gene018202:CDS | 45.0% |
| ! | GTTAATGAAGCTGGCTTACG+TGG | - | chr6.3:12106479-12106498 | MS.gene018202:intron | 45.0% |
| ! | TGGCTGAGTCTTTTGGATCT+AGG | - | chr6.3:12108970-12108989 | MS.gene018202:intron | 45.0% |
| ! | TGGTTTAGTTGTGGGTTGTG+GGG | - | chr6.3:12107358-12107377 | MS.gene018202:CDS | 45.0% |
| !! | GGTAGAGAGTCTTGTTTCCA+TGG | + | chr6.3:12108579-12108598 | None:intergenic | 45.0% |
| !! | AATAATAATAATAATATAAG+AGG | - | chr6.3:12107095-12107114 | MS.gene018202:intron | 5.0% |
| !! | TAAAAAATATAAAATTGAAA+AGG | + | chr6.3:12109158-12109177 | None:intergenic | 5.0% |
| CACATTGTGCATCAGCTAGG+TGG | + | chr6.3:12108042-12108061 | None:intergenic | 50.0% | |
| CACCTAGCTGATGCACAATG+TGG | - | chr6.3:12108040-12108059 | MS.gene018202:intron | 50.0% | |
| CGTGTCTGGTTGATCGATGT+GGG | + | chr6.3:12109507-12109526 | None:intergenic | 50.0% | |
| GCCATTTGGACCAGTTGAGA+TGG | - | chr6.3:12109771-12109790 | MS.gene018202:CDS | 50.0% | |
| GGAGAAGATGCTATTGCTGC+TGG | - | chr6.3:12106440-12106459 | MS.gene018202:intron | 50.0% | |
| GTGTTTGTGTCGTCGCATGT+TGG | - | chr6.3:12109274-12109293 | MS.gene018202:intron | 50.0% | |
| TGGACTCGCCCCAATAGTTA+AGG | - | chr6.3:12107153-12107172 | MS.gene018202:intron | 50.0% | |
| GCGTGTCTGGTTGATCGATG+TGG | + | chr6.3:12109508-12109527 | None:intergenic | 55.0% | |
| TGCATCAGCTAGGTGGGAGT+GGG | + | chr6.3:12108035-12108054 | None:intergenic | 55.0% | |
| !! | AGAGGCCTTTTGGCTGCTTC+TGG | - | chr6.3:12109829-12109848 | MS.gene018202:CDS | 55.0% |
| GTGCATCAGCTAGGTGGGAG+TGG | + | chr6.3:12108036-12108055 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 12106332 | 12110021 | 12106332 | ID=MS.gene018202 |
| chr6.3 | mRNA | 12106332 | 12110021 | 12106332 | ID=MS.gene018202.t1;Parent=MS.gene018202 |
| chr6.3 | exon | 12109743 | 12110021 | 12109743 | ID=MS.gene018202.t1.exon1;Parent=MS.gene018202.t1 |
| chr6.3 | CDS | 12109743 | 12110021 | 12109743 | ID=cds.MS.gene018202.t1;Parent=MS.gene018202.t1 |
| chr6.3 | exon | 12107237 | 12107882 | 12107237 | ID=MS.gene018202.t1.exon2;Parent=MS.gene018202.t1 |
| chr6.3 | CDS | 12107237 | 12107882 | 12107237 | ID=cds.MS.gene018202.t1;Parent=MS.gene018202.t1 |
| chr6.3 | exon | 12106481 | 12106721 | 12106481 | ID=MS.gene018202.t1.exon3;Parent=MS.gene018202.t1 |
| chr6.3 | CDS | 12106481 | 12106721 | 12106481 | ID=cds.MS.gene018202.t1;Parent=MS.gene018202.t1 |
| chr6.3 | exon | 12106332 | 12106371 | 12106332 | ID=MS.gene018202.t1.exon4;Parent=MS.gene018202.t1 |
| chr6.3 | CDS | 12106332 | 12106371 | 12106332 | ID=cds.MS.gene018202.t1;Parent=MS.gene018202.t1 |
| Gene Sequence |
| Protein sequence |
