AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene01868

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01868.t1 MTR_2g022700 96.893 354 11 0 1 354 43 396 0.0 699
MS.gene01868.t1 MTR_4g131800 81.132 371 47 1 6 353 45 415 0.0 560
MS.gene01868.t1 MTR_3g049400 77.500 360 67 5 4 352 44 400 0.0 550
MS.gene01868.t1 MTR_2g029180 49.555 337 157 7 17 350 66 392 1.30e-96 293
MS.gene01868.t1 MTR_4g088350 43.537 294 157 4 60 349 97 385 1.73e-78 247
MS.gene01868.t1 MTR_5g044220 40.058 342 180 6 27 354 65 395 3.39e-76 241
MS.gene01868.t1 MTR_6g005480 44.012 334 166 6 30 357 92 410 1.07e-75 240
MS.gene01868.t1 MTR_4g105630 41.391 302 172 3 58 357 81 379 4.67e-71 227
MS.gene01868.t1 MTR_4g105630 40.893 291 169 2 58 346 81 370 3.60e-67 216
MS.gene01868.t1 MTR_3g077640 39.429 350 193 5 10 357 72 404 2.04e-66 216
MS.gene01868.t1 MTR_4g088350 41.509 265 146 4 89 349 15 274 2.24e-63 204
MS.gene01868.t1 MTR_4g105630 37.759 241 147 2 58 296 81 320 3.06e-45 159
MS.gene01868.t1 MTR_4g105630 39.535 215 128 1 58 270 81 295 6.81e-43 152
MS.gene01868.t1 MTR_1g030320 26.974 304 183 7 69 352 21 305 7.94e-24 101
MS.gene01868.t1 MTR_3g072380 26.645 304 184 7 69 352 22 306 1.29e-23 100
MS.gene01868.t1 MTR_3g072380 30.357 168 107 3 69 229 22 186 7.05e-17 79.7
MS.gene01868.t1 MTR_3g070000 23.226 310 219 11 54 352 17 318 3.70e-16 79.0
MS.gene01868.t1 MTR_4g018760 22.945 292 214 6 68 352 19 306 9.32e-15 74.7
MS.gene01868.t1 MTR_5g081710 23.129 294 213 8 67 352 14 302 1.59e-14 73.9
MS.gene01868.t1 MTR_3g462070 21.306 291 218 6 69 352 17 303 2.08e-13 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene01868.t1 AT1G61800 82.235 349 54 1 4 352 47 387 0.0 583
MS.gene01868.t1 AT1G61800 82.709 347 52 1 4 350 47 385 0.0 582
MS.gene01868.t1 AT5G54800 78.873 355 62 3 4 353 42 388 0.0 546
MS.gene01868.t1 AT5G17630 46.648 358 185 5 6 360 57 411 7.32e-110 328
MS.gene01868.t1 AT4G03950 57.191 299 66 7 62 357 18 257 1.43e-94 284
MS.gene01868.t1 AT5G46110 43.197 294 158 4 60 349 106 394 3.52e-78 246
MS.gene01868.t1 AT5G46110 43.197 294 158 4 60 349 106 394 3.71e-78 246
MS.gene01868.t1 AT5G46110 43.509 285 152 4 69 349 2 281 1.94e-77 241
MS.gene01868.t1 AT5G46110 41.837 294 151 5 60 349 106 383 8.12e-73 232
MS.gene01868.t1 AT3G01550 39.871 311 184 2 50 357 67 377 4.03e-68 219
MS.gene01868.t1 AT3G01550 38.907 311 182 3 50 357 67 372 4.20e-64 209
MS.gene01868.t1 AT5G33320 40.678 295 172 2 60 352 106 399 5.45e-62 204
MS.gene01868.t1 AT1G77610 25.926 297 195 5 69 352 16 300 5.62e-24 101
MS.gene01868.t1 AT1G21870 25.926 297 195 6 69 352 22 306 6.08e-23 98.6
MS.gene01868.t1 AT5G05820 23.746 299 214 9 62 352 12 304 3.48e-17 81.6
MS.gene01868.t1 AT3G11320 23.077 299 216 9 62 352 12 304 2.68e-15 76.3
MS.gene01868.t1 AT1G12500 24.150 294 210 8 67 352 64 352 4.09e-13 70.1

Find 68 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTGTCACATTCTTTCTTT+TGG 0.109741 2.2:+62893451 None:intergenic
CTAAAGTTAACTTGGATTTC+TGG 0.136067 2.2:-62893178 MS.gene01868:CDS
AATTCTTGTTTCAGGATTTA+TGG 0.170342 2.2:-62892462 MS.gene01868:intron
CTCTCATTGTTGCCAATAAT+TGG 0.171795 2.2:-62892600 MS.gene01868:CDS
CAAATTTGGCATTTGTATTC+AGG 0.181063 2.2:-62892427 MS.gene01868:CDS
CAGAAATCCAAGTTAACTTT+AGG 0.181603 2.2:+62893179 None:intergenic
GGGAGCTATGATATCAAATT+TGG 0.191205 2.2:-62892441 MS.gene01868:CDS
GGAGCAGCTATTGCAATTCT+TGG 0.270973 2.2:-62891915 MS.gene01868:CDS
ATGACACTTGATTATATAAA+TGG 0.296751 2.2:+62892060 None:intergenic
TGAAAGATAGAGAGGTTTCT+TGG 0.315407 2.2:+62893505 None:intergenic
AGTGCGCAACCACCAATTAT+TGG 0.320937 2.2:+62892588 None:intergenic
TGTTAATCTCATGGGCTACT+AGG 0.323213 2.2:-62893214 MS.gene01868:CDS
CAACCAGCAGTCCAAACTTT+AGG 0.328755 2.2:+62892287 None:intergenic
ATTTCCTATGCTAAATGTTA+AGG 0.334042 2.2:+62892013 None:intergenic
GAGCAGGCTAAACAGAATTA+AGG 0.359432 2.2:-62891706 MS.gene01868:CDS
ATTCTTGTTTCAGGATTTAT+GGG 0.368019 2.2:-62892461 MS.gene01868:intron
TATGCTTACCAGACAAAATT+CGG 0.368126 2.2:+62892239 None:intergenic
CTGTGGAGGGTCCTAAAGTT+TGG 0.369475 2.2:-62892298 MS.gene01868:CDS
CTCTCATTATGTTAATCTCA+TGG 0.373482 2.2:-62893223 MS.gene01868:CDS
AGAAATCCAAGTTAACTTTA+GGG 0.384705 2.2:+62893180 None:intergenic
GAACTCAATTTCAATATGAT+TGG 0.386036 2.2:-62892552 MS.gene01868:intron
CAAACAGCTGTGTCTCAAAT+TGG 0.392629 2.2:-62892263 MS.gene01868:CDS
AGCTGCTCCAAGAGCATTGA+TGG 0.393145 2.2:+62891929 None:intergenic
GGCAACAATGAGAGGTAAAC+TGG 0.394912 2.2:+62892609 None:intergenic
AGTGAATGAAACTGCTACTT+TGG 0.405993 2.2:+62892707 None:intergenic
TTTCCTATGCTAAATGTTAA+GGG 0.408792 2.2:+62892014 None:intergenic
GGTCCTAAAGTTTGGACTGC+TGG 0.426259 2.2:-62892290 MS.gene01868:CDS
GCAGCTCAAAAGCTCAAGAT+TGG 0.427817 2.2:-62893362 MS.gene01868:CDS
TCCACTTTATCCTTAGCTGC+TGG 0.430126 2.2:-62893248 MS.gene01868:CDS
TTCTCAAAGAAAGGAATGAA+TGG 0.434361 2.2:-62892398 MS.gene01868:CDS
CTTCAACCCATCAATGCTCT+TGG 0.453683 2.2:-62891936 MS.gene01868:CDS
GTAGCTGTGGCACACACAAT+TGG 0.470268 2.2:-62892756 MS.gene01868:CDS
ACCAGCAGCTAAGGATAAAG+TGG 0.472955 2.2:+62893247 None:intergenic
GTTAATCTCATGGGCTACTA+GGG 0.473011 2.2:-62893213 MS.gene01868:CDS
TGAGGCCCCTAAAGTTAACT+TGG 0.473088 2.2:-62893186 MS.gene01868:CDS
TAGCTGTGGCACACACAATT+GGG 0.496344 2.2:-62892755 MS.gene01868:CDS
AGGAATATATTCTCAAAGAA+AGG 0.498153 2.2:-62892407 MS.gene01868:CDS
ATGAATGGGATGAGTGTTAG+TGG 0.502849 2.2:-62892383 MS.gene01868:CDS
TGGCACCTTCATCTATTCAC+AGG 0.508331 2.2:-62891895 MS.gene01868:intron
TCTCAAAGAAAGGAATGAAT+GGG 0.514111 2.2:-62892397 MS.gene01868:CDS
TGAGTGGATGAAAGATAGAG+AGG 0.518129 2.2:+62893497 None:intergenic
CCCTCCACAGCAATAGCAAA+AGG 0.519923 2.2:+62892311 None:intergenic
CAGCTCAAAAGCTCAAGATT+GGG 0.521252 2.2:-62893361 MS.gene01868:CDS
TCTCATTATGTTAATCTCAT+GGG 0.522285 2.2:-62893222 MS.gene01868:CDS
AATGAGAGAACCAGCAGCTA+AGG 0.537711 2.2:+62893238 None:intergenic
TCATTGTTGCCAATAATTGG+TGG 0.544739 2.2:-62892597 MS.gene01868:CDS
AACATTGAACTTCCTAGTGA+AGG 0.545080 2.2:-62893386 MS.gene01868:CDS
CTAGTATCAAGATTCATGCT+TGG 0.552737 2.2:-62892648 MS.gene01868:CDS
CTAAAGTTTGGACTGCTGGT+TGG 0.555262 2.2:-62892286 MS.gene01868:CDS
CATCATCAAGAGTGGAGAGC+CGG 0.558982 2.2:-62892682 MS.gene01868:CDS
GACAGAATGTCAAGCTTATG+AGG 0.561271 2.2:-62893435 MS.gene01868:CDS
GAAATCCAAGTTAACTTTAG+GGG 0.565634 2.2:+62893181 None:intergenic
CTTATGAGGCTGATAGATCA+AGG 0.566563 2.2:-62893421 MS.gene01868:CDS
TCTCCCTTAACATTTAGCAT+AGG 0.566878 2.2:-62892017 MS.gene01868:CDS
GCTAAACAGAATTAAGGTTG+CGG 0.569787 2.2:-62891700 MS.gene01868:CDS
GTGGAAGTGAGCCAAGGGTA+AGG 0.571201 2.2:+62893266 None:intergenic
GATACTAGCACACTGAAAGC+CGG 0.571541 2.2:+62892663 None:intergenic
ATGGGCTACTAGGGTTGCTG+AGG 0.583408 2.2:-62893204 MS.gene01868:CDS
ATTGGGTATGCAGGTAGCTG+TGG 0.585242 2.2:-62892769 MS.gene01868:intron
ATTCACCTGTGAATAGATGA+AGG 0.585857 2.2:+62891890 None:intergenic
TTCACTCACATCATCAAGAG+TGG 0.593759 2.2:-62892690 MS.gene01868:CDS
TGGTGTGTGAAAGATAATGA+TGG 0.599746 2.2:+62891959 None:intergenic
AGTTCAATGTTAATCTCTAG+TGG 0.602873 2.2:+62893398 None:intergenic
CAATTATTGGCAACAATGAG+AGG 0.616851 2.2:+62892601 None:intergenic
GATAAAGTGGAAGTGAGCCA+AGG 0.631302 2.2:+62893260 None:intergenic
GCTGCTCCAAGAGCATTGAT+GGG 0.645674 2.2:+62891930 None:intergenic
ATAAAGTGGAAGTGAGCCAA+GGG 0.650767 2.2:+62893261 None:intergenic
AGAGCATTGATGGGTTGAAG+TGG 0.671770 2.2:+62891939 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCTTTAATTAATAATAATTT+GGG - chr2.2:62893059-62893078 MS.gene01868:intron 10.0%
!! TTTATTACTTAAATTATTAC+AGG - chr2.2:62892294-62892313 MS.gene01868:CDS 10.0%
!!! TTTTTTTTTTTTATGTTTAC+AGG - chr2.2:62893083-62893102 MS.gene01868:intron 10.0%
!! ATCTTTATAGTTTATACTTT+GGG - chr2.2:62893353-62893372 MS.gene01868:CDS 15.0%
!! CGCTTTAATTAATAATAATT+TGG - chr2.2:62893058-62893077 MS.gene01868:intron 15.0%
!! AATTAGAATGAAAAGAAAGT+GGG + chr2.2:62892069-62892088 None:intergenic 20.0%
!! ACCTAAGAAATTTCAAAATT+GGG - chr2.2:62892406-62892425 MS.gene01868:CDS 20.0%
!! ATGACACTTGATTATATAAA+TGG + chr2.2:62893135-62893154 None:intergenic 20.0%
!! GATCTTTATAGTTTATACTT+TGG - chr2.2:62893352-62893371 MS.gene01868:CDS 20.0%
!! TATACTAGTTCAAATTTCTT+CGG - chr2.2:62893032-62893051 MS.gene01868:intron 20.0%
!!! TTTTTTTTATGTTTACAGGT+GGG - chr2.2:62893087-62893106 MS.gene01868:intron 20.0%
!!! TTTTTTTTTATGTTTACAGG+TGG - chr2.2:62893086-62893105 MS.gene01868:intron 20.0%
! AGAAATCCAAGTTAACTTTA+GGG + chr2.2:62892015-62892034 None:intergenic 25.0%
! AGGAATATATTCTCAAAGAA+AGG - chr2.2:62892785-62892804 MS.gene01868:intron 25.0%
! ATTAGAATGAAAAGAAAGTG+GGG + chr2.2:62892068-62892087 None:intergenic 25.0%
! ATTTCCTATGCTAAATGTTA+AGG + chr2.2:62893182-62893201 None:intergenic 25.0%
! CAATTAGAATGAAAAGAAAG+TGG + chr2.2:62892070-62892089 None:intergenic 25.0%
! CACCTAAGAAATTTCAAAAT+TGG - chr2.2:62892405-62892424 MS.gene01868:CDS 25.0%
! GAACTCAATTTCAATATGAT+TGG - chr2.2:62892640-62892659 MS.gene01868:CDS 25.0%
! GATCAAGTACATAATTTAGT+AGG + chr2.2:62893336-62893355 None:intergenic 25.0%
! TCTCATTATGTTAATCTCAT+GGG - chr2.2:62891970-62891989 MS.gene01868:CDS 25.0%
! TTTCCTATGCTAAATGTTAA+GGG + chr2.2:62893181-62893200 None:intergenic 25.0%
!! AATTCTTGTTTCAGGATTTA+TGG - chr2.2:62892730-62892749 MS.gene01868:CDS 25.0%
!! ATTCTTGTTTCAGGATTTAT+GGG - chr2.2:62892731-62892750 MS.gene01868:CDS 25.0%
!! GATTTTTCTTACAGGAAAAA+GGG + chr2.2:62892044-62892063 None:intergenic 25.0%
!! TACAATATCAATGCTCTAAA+TGG - chr2.2:62892704-62892723 MS.gene01868:CDS 25.0%
!! TGATTTTTCTTACAGGAAAA+AGG + chr2.2:62892045-62892064 None:intergenic 25.0%
!!! ACCCAATTTTGAAATTTCTT+AGG + chr2.2:62892410-62892429 None:intergenic 25.0%
AATTTCAAAATTGGGTATGC+AGG - chr2.2:62892414-62892433 MS.gene01868:CDS 30.0%
AGTTCAATGTTAATCTCTAG+TGG + chr2.2:62891797-62891816 None:intergenic 30.0%
CAAATTTGGCATTTGTATTC+AGG - chr2.2:62892765-62892784 MS.gene01868:intron 30.0%
CAGAAATCCAAGTTAACTTT+AGG + chr2.2:62892016-62892035 None:intergenic 30.0%
CTCTCATTATGTTAATCTCA+TGG - chr2.2:62891969-62891988 MS.gene01868:CDS 30.0%
GAAATCCAAGTTAACTTTAG+GGG + chr2.2:62892014-62892033 None:intergenic 30.0%
GAGATTGAAACATTATGTGA+GGG - chr2.2:62893424-62893443 MS.gene01868:CDS 30.0%
TATGCTTACCAGACAAAATT+CGG + chr2.2:62892956-62892975 None:intergenic 30.0%
TCTCAAAGAAAGGAATGAAT+GGG - chr2.2:62892795-62892814 MS.gene01868:intron 30.0%
TGAGATTGAAACATTATGTG+AGG - chr2.2:62893423-62893442 MS.gene01868:CDS 30.0%
TTCTCAAAGAAAGGAATGAA+TGG - chr2.2:62892794-62892813 MS.gene01868:intron 30.0%
TTGAATGTAACTACATGCAT+CGG + chr2.2:62892140-62892159 None:intergenic 30.0%
! AATGGATCAATTCTTGTTTC+AGG - chr2.2:62892722-62892741 MS.gene01868:CDS 30.0%
! CTAAAGTTAACTTGGATTTC+TGG - chr2.2:62892014-62892033 MS.gene01868:CDS 30.0%
! TAGCAATGCAAAATTTTGAG+TGG + chr2.2:62891714-62891733 None:intergenic 30.0%
! TCTGTCACATTCTTTCTTTT+GGG + chr2.2:62891743-62891762 None:intergenic 30.0%
! TTCTGTCACATTCTTTCTTT+TGG + chr2.2:62891744-62891763 None:intergenic 30.0%
!!! TGTTGATTTTTTGAAAGAGC+AGG - chr2.2:62893470-62893489 MS.gene01868:CDS 30.0%
AACATTGAACTTCCTAGTGA+AGG - chr2.2:62891806-62891825 MS.gene01868:intron 35.0%
ATTCACCTGTGAATAGATGA+AGG + chr2.2:62893305-62893324 None:intergenic 35.0%
CAATTATTGGCAACAATGAG+AGG + chr2.2:62892594-62892613 None:intergenic 35.0%
CTAGTATCAAGATTCATGCT+TGG - chr2.2:62892544-62892563 MS.gene01868:intron 35.0%
CTCTCATTGTTGCCAATAAT+TGG - chr2.2:62892592-62892611 MS.gene01868:CDS 35.0%
GCTAAACAGAATTAAGGTTG+CGG - chr2.2:62893492-62893511 MS.gene01868:CDS 35.0%
GGGAGCTATGATATCAAATT+TGG - chr2.2:62892751-62892770 MS.gene01868:CDS 35.0%
GTAACTACATTTGTCAGTGT+CGG + chr2.2:62892264-62892283 None:intergenic 35.0%
GTGAGCACTAAAAATAACAC+CGG + chr2.2:62892388-62892407 None:intergenic 35.0%
TCATTGTTGCCAATAATTGG+TGG - chr2.2:62892595-62892614 MS.gene01868:CDS 35.0%
TCTCCCTTAACATTTAGCAT+AGG - chr2.2:62893175-62893194 MS.gene01868:CDS 35.0%
TGAAAGATAGAGAGGTTTCT+TGG + chr2.2:62891690-62891709 None:intergenic 35.0%
TGGTGTGTGAAAGATAATGA+TGG + chr2.2:62893236-62893255 None:intergenic 35.0%
! AAATTGGTCCGAATTTTGTC+TGG - chr2.2:62892945-62892964 MS.gene01868:intron 35.0%
! AGTGAATGAAACTGCTACTT+TGG + chr2.2:62892488-62892507 None:intergenic 35.0%
! TTTTTATGTTTACAGGTGGG+TGG - chr2.2:62893090-62893109 MS.gene01868:intron 35.0%
!! GTTGTATTTTGCTACTTGGT+GGG - chr2.2:62891853-62891872 MS.gene01868:intron 35.0%
!! TTGGGTTGTATTTTGCTACT+TGG - chr2.2:62891849-62891868 MS.gene01868:intron 35.0%
!!! ACTTTTTCAACCTGAAGTGT+CGG + chr2.2:62892232-62892251 None:intergenic 35.0%
ATAAAGTGGAAGTGAGCCAA+GGG + chr2.2:62891934-62891953 None:intergenic 40.0%
ATGAATGGGATGAGTGTTAG+TGG - chr2.2:62892809-62892828 MS.gene01868:intron 40.0%
CAAACAGCTGTGTCTCAAAT+TGG - chr2.2:62892929-62892948 MS.gene01868:intron 40.0%
CAATGTGTCAGTGTAATGTC+CGG - chr2.2:62892366-62892385 MS.gene01868:CDS 40.0%
CAGCTCAAAAGCTCAAGATT+GGG - chr2.2:62891831-62891850 MS.gene01868:intron 40.0%
CTATGTGTCAGTATAGTGTC+TGG - chr2.2:62892320-62892339 MS.gene01868:CDS 40.0%
CTTATGAGGCTGATAGATCA+AGG - chr2.2:62891771-62891790 MS.gene01868:intron 40.0%
GACACATTGATATCAGTCAC+TGG + chr2.2:62892355-62892374 None:intergenic 40.0%
GACAGAATGTCAAGCTTATG+AGG - chr2.2:62891757-62891776 MS.gene01868:intron 40.0%
GAGCAGGCTAAACAGAATTA+AGG - chr2.2:62893486-62893505 MS.gene01868:CDS 40.0%
GTACTGTTGAAAAGTGGCAT+CGG + chr2.2:62892210-62892229 None:intergenic 40.0%
TGAGTGGATGAAAGATAGAG+AGG + chr2.2:62891698-62891717 None:intergenic 40.0%
TTCACTCACATCATCAAGAG+TGG - chr2.2:62892502-62892521 MS.gene01868:intron 40.0%
! AGTGGGGTGATTTTTCTTAC+AGG + chr2.2:62892052-62892071 None:intergenic 40.0%
! GAAGCTTTTATCGAACGCAT+GGG - chr2.2:62893519-62893538 MS.gene01868:CDS 40.0%
! GTTAATCTCATGGGCTACTA+GGG - chr2.2:62891979-62891998 MS.gene01868:CDS 40.0%
! GTTTTCACTTTCACTAGCAC+TGG - chr2.2:62892089-62892108 MS.gene01868:CDS 40.0%
! TGAAGCTTTTATCGAACGCA+TGG - chr2.2:62893518-62893537 MS.gene01868:CDS 40.0%
! TGAATGCTTTTCCTTACCCT+TGG - chr2.2:62891915-62891934 MS.gene01868:CDS 40.0%
! TGTTAATCTCATGGGCTACT+AGG - chr2.2:62891978-62891997 MS.gene01868:CDS 40.0%
!! GGTTGTATTTTGCTACTTGG+TGG - chr2.2:62891852-62891871 MS.gene01868:intron 40.0%
AATGAGAGAACCAGCAGCTA+AGG + chr2.2:62891957-62891976 None:intergenic 45.0%
ACCAGCAGCTAAGGATAAAG+TGG + chr2.2:62891948-62891967 None:intergenic 45.0%
AGTGCGCAACCACCAATTAT+TGG + chr2.2:62892607-62892626 None:intergenic 45.0%
CAACCAGCAGTCCAAACTTT+AGG + chr2.2:62892908-62892927 None:intergenic 45.0%
CTAAAGTTTGGACTGCTGGT+TGG - chr2.2:62892906-62892925 MS.gene01868:intron 45.0%
CTTCAACCCATCAATGCTCT+TGG - chr2.2:62893256-62893275 MS.gene01868:CDS 45.0%
GATAAAGTGGAAGTGAGCCA+AGG + chr2.2:62891935-62891954 None:intergenic 45.0%
GATACTAGCACACTGAAAGC+CGG + chr2.2:62892532-62892551 None:intergenic 45.0%
GCAGCTCAAAAGCTCAAGAT+TGG - chr2.2:62891830-62891849 MS.gene01868:intron 45.0%
GGAGCAGCTATTGCAATTCT+TGG - chr2.2:62893277-62893296 MS.gene01868:CDS 45.0%
GGCAACAATGAGAGGTAAAC+TGG + chr2.2:62892586-62892605 None:intergenic 45.0%
TAGCTGTGGCACACACAATT+GGG - chr2.2:62892437-62892456 MS.gene01868:CDS 45.0%
TCCACTTTATCCTTAGCTGC+TGG - chr2.2:62891944-62891963 MS.gene01868:CDS 45.0%
TGAGGCCCCTAAAGTTAACT+TGG - chr2.2:62892006-62892025 MS.gene01868:CDS 45.0%
TGGCACCTTCATCTATTCAC+AGG - chr2.2:62893297-62893316 MS.gene01868:CDS 45.0%
! GTGTCGGTACTGTTGAAAAG+TGG + chr2.2:62892216-62892235 None:intergenic 45.0%
! TTTTGAGCTGCTCCTTCACT+AGG + chr2.2:62891821-62891840 None:intergenic 45.0%
!! AGAGCATTGATGGGTTGAAG+TGG + chr2.2:62893256-62893275 None:intergenic 45.0%
!! TTCAACAGTACCGACACTTC+AGG - chr2.2:62892219-62892238 MS.gene01868:intron 45.0%
!!! ACCTTTTGCTATTGCTGTGG+AGG - chr2.2:62892880-62892899 MS.gene01868:intron 45.0%
!!! CACACCTTTTGCTATTGCTG+TGG - chr2.2:62892877-62892896 MS.gene01868:intron 45.0%
!!! CCTTTTGCTATTGCTGTGGA+GGG - chr2.2:62892881-62892900 MS.gene01868:intron 45.0%
ATTGGGTATGCAGGTAGCTG+TGG - chr2.2:62892423-62892442 MS.gene01868:CDS 50.0%
CATCATCAAGAGTGGAGAGC+CGG - chr2.2:62892510-62892529 MS.gene01868:intron 50.0%
CCCTCCACAGCAATAGCAAA+AGG + chr2.2:62892884-62892903 None:intergenic 50.0%
CTGTGGAGGGTCCTAAAGTT+TGG - chr2.2:62892894-62892913 MS.gene01868:intron 50.0%
GGTCCTAAAGTTTGGACTGC+TGG - chr2.2:62892902-62892921 MS.gene01868:intron 50.0%
GTAGCTGTGGCACACACAAT+TGG - chr2.2:62892436-62892455 MS.gene01868:CDS 50.0%
!! AGCTGCTCCAAGAGCATTGA+TGG + chr2.2:62893266-62893285 None:intergenic 50.0%
!! GCTGCTCCAAGAGCATTGAT+GGG + chr2.2:62893265-62893284 None:intergenic 50.0%
GTGGAAGTGAGCCAAGGGTA+AGG + chr2.2:62891929-62891948 None:intergenic 55.0%
! ATGGGCTACTAGGGTTGCTG+AGG - chr2.2:62891988-62892007 MS.gene01868:CDS 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 62891665 62893549 62891665 ID=MS.gene01868
chr2.2 mRNA 62891665 62893549 62891665 ID=MS.gene01868.t1;Parent=MS.gene01868
chr2.2 exon 62893163 62893549 62893163 ID=MS.gene01868.t1.exon1;Parent=MS.gene01868.t1
chr2.2 CDS 62893163 62893549 62893163 ID=cds.MS.gene01868.t1;Parent=MS.gene01868.t1
chr2.2 exon 62892553 62892778 62892553 ID=MS.gene01868.t1.exon2;Parent=MS.gene01868.t1
chr2.2 CDS 62892553 62892778 62892553 ID=cds.MS.gene01868.t1;Parent=MS.gene01868.t1
chr2.2 exon 62892248 62892470 62892248 ID=MS.gene01868.t1.exon3;Parent=MS.gene01868.t1
chr2.2 CDS 62892248 62892470 62892248 ID=cds.MS.gene01868.t1;Parent=MS.gene01868.t1
chr2.2 exon 62891896 62892109 62891896 ID=MS.gene01868.t1.exon4;Parent=MS.gene01868.t1
chr2.2 CDS 62891896 62892109 62891896 ID=cds.MS.gene01868.t1;Parent=MS.gene01868.t1
chr2.2 exon 62891665 62891727 62891665 ID=MS.gene01868.t1.exon5;Parent=MS.gene01868.t1
chr2.2 CDS 62891665 62891727 62891665 ID=cds.MS.gene01868.t1;Parent=MS.gene01868.t1
Gene Sequence

>MS.gene01868

ATGGGTCTCTCTCTACTTTCTTCCAAGAAACCTCTCTATCTTTCATCCACTCAAAATTTTGCATTGCTAACAAAACCCAAAAGAAAGAATGTGACAGAATGTCAAGCTTATGAGGCTGATAGATCAAGGCCACTAGAGATTAACATTGAACTTCCTAGTGAAGGAGCAGCTCAAAAGCTCAAGATTGGGTTGTATTTTGCTACTTGGTGGGCTTTGAATGTTGTTTTCAACATATACAACAAGAAAGTTTTGAATGCTTTTCCTTACCCTTGGCTCACTTCCACTTTATCCTTAGCTGCTGGTTCTCTCATTATGTTAATCTCATGGGCTACTAGGGTTGCTGAGGCCCCTAAAGTTAACTTGGATTTCTGGAAAGCCCTTTTTCCTGTAAGAAAAATCACCCCACTTTCTTTTCATTCTAATTGTTTTCACTTTCACTAGCACTGGCATAAGACACATTTAGTGTCTGACACCGATGCATGTAGTTACATTCAATTACTTTCATTTCTAAATTATTATCAGTGTATGTCTCAGTGTCGTATCCGATGCCACTTTTCAACAGTACCGACACTTCAGGTTGAAAAAGTGTCTAATGTCCGACACTGACAAATGTAGTTACATTCAATTAGTTTATTACTTAAATTATTACAGGTATCTATGTGTCAGTATAGTGTCTGGTTTCTATCTCCAGTGACTGATATCAATGTGTCAGTGTAATGTCCGGTGTTATTTTTAGTGCTCACCTAAGAAATTTCAAAATTGGGTATGCAGGTAGCTGTGGCACACACAATTGGGCATGTTGCTGCAACTGTGAGTATGTCCAAAGTAGCAGTTTCATTCACTCACATCATCAAGAGTGGAGAGCCGGCTTTCAGTGTGCTAGTATCAAGATTCATGCTTGGAGAAGCATTCGCTATGCCAGTTTACCTCTCATTGTTGCCAATAATTGGTGGTTGCGCACTAGCTGCTATGACAGAACTCAATTTCAATATGATTGGTAAGAACAACATAACAAACAATTATTCACATAAATATAAAGTACAATATCAATGCTCTAAATGGATCAATTCTTGTTTCAGGATTTATGGGAGCTATGATATCAAATTTGGCATTTGTATTCAGGAATATATTCTCAAAGAAAGGAATGAATGGGATGAGTGTTAGTGGAATGAACTATTATGCTTGTCTTTCAATGTTATCTCTTTTAATTCTCACACCTTTTGCTATTGCTGTGGAGGGTCCTAAAGTTTGGACTGCTGGTTGGCAAACAGCTGTGTCTCAAATTGGTCCGAATTTTGTCTGGTAAGCATAAAACTCTACGAATTTATGTGTCAGTTCAGTGATAAAAGTTTGATTTTCTAAAGTGATATACTAGTTCAAATTTCTTCGGAAACGCTTTAATTAATAATAATTTGGGATTTTTTTTTTTTATGTTTACAGGTGGGTGGTTGCACAAAGTGTGTTCTACCATTTATATAATCAAGTGTCATACATGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATAGGAAATACAATGAAGAGAATATCTGTAATAGTCTCTTCCATCATTATCTTTCACACACCACTTCAACCCATCAATGCTCTTGGAGCAGCTATTGCAATTCTTGGCACCTTCATCTATTCACAGGTGAATTCTCATTTCCTACTAAATTATGTACTTGATCTTTATAGTTTATACTTTGGGAATGTTCTTTTTATGTGTGTGTGTGTGTGTGTGTTTAATATCTTGTTTGAGATTGAAACATTATGTGAGGGATGCAATTAATTAACTCAATTTCTGTTGATTTTTTGAAAGAGCAGGCTAAACAGAATTAAGGTTGCGGTTTTGAAGCTTTTATCGAACGCATGGGAACGATGA
Protein sequence

>MS.gene01868.t1

MGLSLLSSKKPLYLSSTQNFALLTKPKRKNVTECQAYEADRSRPLEINIELPSEGAAQKLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLIMLISWATRVAEAPKVNLDFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFMLGEAFAMPVYLSLLPIIGGCALAAMTELNFNMIGFMGAMISNLAFVFRNIFSKKGMNGMSVSGMNYYACLSMLSLLILTPFAIAVEGPKVWTAGWQTAVSQIGPNFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSIIIFHTPLQPINALGAAIAILGTFIYSQSRLNRIKVAVLKLLSNAWER