Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020029.t1 | XP_013443975.1 | 93.3 | 433 | 13 | 1 | 1 | 417 | 1 | 433 | 1.50E-232 | 815.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020029.t1 | A0A072TKP9 | 93.3 | 433 | 13 | 1 | 1 | 417 | 1 | 433 | 1.1e-232 | 815.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene030339 | MS.gene020029 | PPI |
| MS.gene063341 | MS.gene020029 | PPI |
| MS.gene66390 | MS.gene020029 | PPI |
| MS.gene75022 | MS.gene020029 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020029.t1 | MTR_8g009770 | 93.303 | 433 | 13 | 1 | 1 | 417 | 1 | 433 | 0.0 | 816 |
| MS.gene020029.t1 | MTR_3g110630 | 37.225 | 454 | 232 | 12 | 1 | 411 | 1 | 444 | 1.45e-80 | 255 |
| MS.gene020029.t1 | MTR_6g090060 | 41.642 | 341 | 172 | 7 | 79 | 411 | 91 | 412 | 2.26e-79 | 251 |
| MS.gene020029.t1 | MTR_5g005420 | 35.068 | 442 | 233 | 10 | 1 | 414 | 1 | 416 | 5.27e-72 | 232 |
| MS.gene020029.t1 | MTR_8g102270 | 39.466 | 337 | 163 | 8 | 79 | 411 | 53 | 352 | 1.54e-57 | 193 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene020029.t1 | AT5G17640 | 69.104 | 424 | 105 | 7 | 1 | 404 | 1 | 418 | 0.0 | 550 |
| MS.gene020029.t1 | AT4G29310 | 40.416 | 433 | 216 | 11 | 1 | 411 | 1 | 413 | 3.64e-85 | 266 |
| MS.gene020029.t1 | AT1G10020 | 37.527 | 461 | 230 | 13 | 1 | 411 | 1 | 453 | 1.98e-81 | 258 |
| MS.gene020029.t1 | AT3G19680 | 33.939 | 495 | 234 | 14 | 1 | 414 | 1 | 483 | 2.96e-66 | 219 |
| MS.gene020029.t1 | AT1G50040 | 38.228 | 395 | 198 | 13 | 48 | 415 | 78 | 453 | 1.42e-60 | 203 |
| MS.gene020029.t1 | AT4G29310 | 39.514 | 329 | 172 | 9 | 1 | 307 | 1 | 324 | 1.48e-56 | 189 |
Find 114 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCCTTCACCCCATTC+AGG | 0.245825 | 8.3:-76459481 | None:intergenic |
| CTAAACTTGCAACTGAATAT+TGG | 0.254964 | 8.3:-76459682 | None:intergenic |
| TTCCATCTTCAGGTTGTGAT+TGG | 0.257792 | 8.3:+76460871 | MS.gene020029:CDS |
| ACTCCATTTGTTCCATCTTC+AGG | 0.295514 | 8.3:+76460861 | MS.gene020029:CDS |
| TGAAGAAAGTCTTTGAATTC+CGG | 0.298015 | 8.3:-76459148 | None:intergenic |
| TGGATCCCCAGGCCTTTATT+AGG | 0.311476 | 8.3:+76459067 | MS.gene020029:CDS |
| TAGGTTGTCGATAGGCTCTC+TGG | 0.312333 | 8.3:+76459086 | MS.gene020029:CDS |
| CTATAATCCTCATGCATGTT+TGG | 0.342455 | 8.3:+76459369 | MS.gene020029:CDS |
| ATTGTGGAGTTGGTGTTAAA+AGG | 0.354539 | 8.3:+76459425 | MS.gene020029:CDS |
| TCCCCACGGCTGCCAGCTCT+CGG | 0.374886 | 8.3:-76460952 | None:intergenic |
| GCCTATCGACAACCTAATAA+AGG | 0.397474 | 8.3:-76459079 | None:intergenic |
| GTCATGAGCTGTAGAGTTCA+AGG | 0.402802 | 8.3:+76461221 | MS.gene020029:CDS |
| TTTAACGGATGGACAGGTAT+TGG | 0.405863 | 8.3:+76459514 | MS.gene020029:CDS |
| CTACTTTGAGGACTAGGTAT+TGG | 0.407413 | 8.3:-76461158 | None:intergenic |
| ATTCAGTTGCAAGTTTAGTA+AGG | 0.411025 | 8.3:+76459687 | MS.gene020029:CDS |
| CGGGGAGGAGAGAGAGAAAA+GGG | 0.413961 | 8.3:+76460781 | MS.gene020029:CDS |
| TCGGGGAGGAGAGAGAGAAA+AGG | 0.415178 | 8.3:+76460780 | MS.gene020029:CDS |
| CGCAATGCCAGCTGTACTAA+TGG | 0.422674 | 8.3:-76461263 | None:intergenic |
| AATTCATATAAATGCCGAAA+AGG | 0.425545 | 8.3:+76461076 | MS.gene020029:CDS |
| GACATTTCTGACTTAGAATC+GGG | 0.427448 | 8.3:+76460762 | MS.gene020029:CDS |
| ACCCTCTTCTGATCTTCCTT+CGG | 0.427964 | 8.3:-76461370 | None:intergenic |
| GCTCCGAGAGCTGGCAGCCG+TGG | 0.427976 | 8.3:+76460949 | MS.gene020029:CDS |
| GAACTGAACACTGGAAAATC+CGG | 0.429083 | 8.3:+76459129 | MS.gene020029:CDS |
| TTTAACTTTCAAATGCAATT+CGG | 0.430158 | 8.3:-76459569 | None:intergenic |
| TGACATTTCTGACTTAGAAT+CGG | 0.431555 | 8.3:+76460761 | MS.gene020029:CDS |
| AAATGCAGGTTGGCCCTGAA+TGG | 0.434195 | 8.3:+76459467 | MS.gene020029:CDS |
| GGAAGATCAGAAGAGGGTTT+CGG | 0.438177 | 8.3:+76461375 | MS.gene020029:CDS |
| CCAAAGTCCCCACTACTTTG+AGG | 0.441891 | 8.3:-76461170 | None:intergenic |
| GGAGGATGCTGCCATCTTCA+TGG | 0.442367 | 8.3:+76461301 | MS.gene020029:CDS |
| CAACCTGAAGATGGAACAAA+TGG | 0.444232 | 8.3:-76460864 | None:intergenic |
| TTCAAATGCAATTCGGCACC+TGG | 0.448516 | 8.3:-76459562 | None:intergenic |
| TCCCTTCTTCCCTGAAAATA+CGG | 0.451160 | 8.3:-76459398 | None:intergenic |
| ATGACAAAACCTCCAACAAC+CGG | 0.455042 | 8.3:-76461203 | None:intergenic |
| CGAACAATCAACCAAGCTCC+TGG | 0.461063 | 8.3:-76460909 | None:intergenic |
| GCGAAGATACATGATCTATC+TGG | 0.461366 | 8.3:+76460810 | MS.gene020029:CDS |
| GAGAGAGAGAAAAGGGTGGA+AGG | 0.472369 | 8.3:+76460788 | MS.gene020029:CDS |
| TCCATCTTCAGGTTGTGATT+GGG | 0.472477 | 8.3:+76460872 | MS.gene020029:CDS |
| TTAAAAGCGTCGTTAGCTCC+TGG | 0.476438 | 8.3:+76459340 | MS.gene020029:CDS |
| GGTGCACTGAGTCCGGTTGT+TGG | 0.478743 | 8.3:+76461191 | MS.gene020029:CDS |
| CGACAACCTAATAAAGGCCT+GGG | 0.480173 | 8.3:-76459073 | None:intergenic |
| TCGACAACCTAATAAAGGCC+TGG | 0.481266 | 8.3:-76459074 | None:intergenic |
| GTTTCCCTTCACCCCATTCA+GGG | 0.481666 | 8.3:-76459480 | None:intergenic |
| ATTGCCTCCATCTTGAGGTT+CGG | 0.487757 | 8.3:-76461039 | None:intergenic |
| CTCCGAGAGCTGGCAGCCGT+GGG | 0.491583 | 8.3:+76460950 | MS.gene020029:CDS |
| CCTCAAAGTAGTGGGGACTT+TGG | 0.494683 | 8.3:+76461170 | MS.gene020029:CDS |
| GGACTTTGGTGCACTGAGTC+CGG | 0.499483 | 8.3:+76461184 | MS.gene020029:CDS |
| CTTCTGATCTTCCTTCGGAA+AGG | 0.500164 | 8.3:-76461365 | None:intergenic |
| CTCGTTGAGCACATACTGGT+CGG | 0.500573 | 8.3:+76460731 | MS.gene020029:CDS |
| TGCCGCAAGTGCCATGAAGA+TGG | 0.500784 | 8.3:-76461312 | None:intergenic |
| GTTGGCCCTGAATGGGGTGA+AGG | 0.501092 | 8.3:+76459475 | MS.gene020029:CDS |
| AAGGGATCTCATTGTGGAGT+TGG | 0.502031 | 8.3:+76459415 | MS.gene020029:CDS |
| CAAGATCCAACCCAGGAGCT+TGG | 0.503040 | 8.3:+76460898 | MS.gene020029:CDS |
| TCGGAGCTACCAACCACATC+GGG | 0.506371 | 8.3:-76460933 | None:intergenic |
| AGGTATTGGCAAGAACAAAC+AGG | 0.506986 | 8.3:+76459528 | MS.gene020029:CDS |
| CTTGAGGTTCGGATAGAAGA+TGG | 0.507376 | 8.3:-76461028 | None:intergenic |
| GTTGCAAGTTTAGTAAGGAC+AGG | 0.508269 | 8.3:+76459692 | MS.gene020029:CDS |
| ATTCATATAAATGCCGAAAA+GGG | 0.511316 | 8.3:+76461077 | MS.gene020029:CDS |
| TGGCAAACCATTAGTACAGC+TGG | 0.513703 | 8.3:+76461256 | MS.gene020029:CDS |
| AATGCAGGTTGGCCCTGAAT+GGG | 0.514543 | 8.3:+76459468 | MS.gene020029:CDS |
| ACCCAATCACAACCTGAAGA+TGG | 0.516099 | 8.3:-76460873 | None:intergenic |
| GCCTTTATTAGGTTGTCGAT+AGG | 0.516364 | 8.3:+76459078 | MS.gene020029:CDS |
| GTTTGTGAGATACGACTTCG+AGG | 0.518240 | 8.3:+76459177 | MS.gene020029:CDS |
| TACCTAGTCCTCAAAGTAGT+GGG | 0.518604 | 8.3:+76461162 | MS.gene020029:CDS |
| CTTGAAGCATGGCGCGAGCG+CGG | 0.523541 | 8.3:+76460978 | MS.gene020029:CDS |
| TGGTTGGTAGCTCCGAGAGC+TGG | 0.527152 | 8.3:+76460940 | MS.gene020029:CDS |
| TCTCTGGGTTTGAGAAGTAC+TGG | 0.531608 | 8.3:+76459102 | MS.gene020029:CDS |
| AAACAGGAGAACGGAAAACC+AGG | 0.532501 | 8.3:+76459544 | MS.gene020029:CDS |
| GGTGTTAAAAGGCAGCAAAT+CGG | 0.539455 | 8.3:+76459436 | MS.gene020029:CDS |
| AGGTTGTCGATAGGCTCTCT+GGG | 0.543318 | 8.3:+76459087 | MS.gene020029:CDS |
| TTGGCCCTGAATGGGGTGAA+GGG | 0.544814 | 8.3:+76459476 | MS.gene020029:CDS |
| TTGACTCGTTGAGCACATAC+TGG | 0.554206 | 8.3:+76460727 | MS.gene020029:CDS |
| CTTCTATCCGAACCTCAAGA+TGG | 0.556068 | 8.3:+76461032 | MS.gene020029:CDS |
| TCGTTGAGCACATACTGGTC+GGG | 0.560757 | 8.3:+76460732 | MS.gene020029:CDS |
| TGACAAGTATATGGATCCCC+AGG | 0.561569 | 8.3:+76459056 | None:intergenic |
| AGAAGATTGCCTCCATCTTG+AGG | 0.562373 | 8.3:-76461044 | None:intergenic |
| GATTCTAAGTCAGAAATGTC+AGG | 0.563508 | 8.3:-76460759 | None:intergenic |
| AATCAACCAAGCTCCTGGGT+TGG | 0.563544 | 8.3:-76460904 | None:intergenic |
| GGAGGAGAGAGAGAAAAGGG+TGG | 0.566007 | 8.3:+76460784 | MS.gene020029:CDS |
| TGCCATCTTCATGGCACTTG+CGG | 0.566182 | 8.3:+76461310 | MS.gene020029:CDS |
| AGCTGTAGAGTTCAAGGTGA+AGG | 0.578146 | 8.3:+76461227 | MS.gene020029:CDS |
| TCCCCACTACTTTGAGGACT+AGG | 0.582772 | 8.3:-76461164 | None:intergenic |
| GCACTGAGTCCGGTTGTTGG+AGG | 0.582970 | 8.3:+76461194 | MS.gene020029:CDS |
| CATGCTTCAAGCTTTCCCCA+CGG | 0.589453 | 8.3:-76460966 | None:intergenic |
| ACTGGAATTGAACTGAACAC+TGG | 0.594978 | 8.3:+76459120 | MS.gene020029:CDS |
| CGTGGGGAAAGCTTGAAGCA+TGG | 0.596348 | 8.3:+76460967 | MS.gene020029:CDS |
| ATACCTAGTCCTCAAAGTAG+TGG | 0.596860 | 8.3:+76461161 | MS.gene020029:CDS |
| GGCAAGAACAAACAGGAGAA+CGG | 0.605160 | 8.3:+76459535 | MS.gene020029:CDS |
| CATATAAATGCCGAAAAGGG+TGG | 0.606361 | 8.3:+76461080 | MS.gene020029:CDS |
| GAACAATCAACCAAGCTCCT+GGG | 0.607466 | 8.3:-76460908 | None:intergenic |
| TTCCGAAGGAAGATCAGAAG+AGG | 0.608044 | 8.3:+76461368 | MS.gene020029:CDS |
| TCCGAAGGAAGATCAGAAGA+GGG | 0.612207 | 8.3:+76461369 | MS.gene020029:CDS |
| ATTGTTCGTCCCGATGTGGT+TGG | 0.613008 | 8.3:+76460924 | MS.gene020029:CDS |
| AACAAATGGAGTTGTTATGA+AGG | 0.614304 | 8.3:-76460850 | None:intergenic |
| GCTTGCATGCCTCAATGCTG+AGG | 0.626470 | 8.3:-76461343 | None:intergenic |
| AGCTGTTGACCTCAGCATTG+AGG | 0.627543 | 8.3:+76461334 | MS.gene020029:CDS |
| CCTCAGATAGTTCTGCTGCA+AGG | 0.634975 | 8.3:+76459646 | MS.gene020029:CDS |
| AGGCATGCAAGCCTTTCCGA+AGG | 0.638060 | 8.3:+76461354 | MS.gene020029:CDS |
| CTCGGAGCTACCAACCACAT+CGG | 0.643864 | 8.3:-76460934 | None:intergenic |
| GGGAAGAAGGGATCTCATTG+TGG | 0.645030 | 8.3:+76459409 | MS.gene020029:CDS |
| CCTTGCAGCAGAACTATCTG+AGG | 0.650920 | 8.3:-76459646 | None:intergenic |
| GTTGATTGTTCGTCCCGATG+TGG | 0.653420 | 8.3:+76460920 | MS.gene020029:CDS |
| CTATCCGAACCTCAAGATGG+AGG | 0.654553 | 8.3:+76461035 | MS.gene020029:CDS |
| TCCGAGAGCTGGCAGCCGTG+GGG | 0.666300 | 8.3:+76460951 | MS.gene020029:CDS |
| ACCTAGTCCTCAAAGTAGTG+GGG | 0.669608 | 8.3:+76461163 | MS.gene020029:CDS |
| GCAATCTCCAAACATGCATG+AGG | 0.671697 | 8.3:-76459376 | None:intergenic |
| ATTGCGACACGTGACGTGCG+TGG | 0.677610 | 8.3:+76461280 | MS.gene020029:CDS |
| ATGCAGGTTGGCCCTGAATG+GGG | 0.680133 | 8.3:+76459469 | MS.gene020029:CDS |
| TTTCTGACTTAGAATCGGGG+AGG | 0.692661 | 8.3:+76460766 | MS.gene020029:CDS |
| GTTCAAGGTGAAGGAAAGCG+TGG | 0.694457 | 8.3:+76461236 | MS.gene020029:CDS |
| TGAGGATTATAGAAACAACC+AGG | 0.699777 | 8.3:-76459358 | None:intergenic |
| TGGGTTGCAAGATCCAACCC+AGG | 0.701236 | 8.3:+76460891 | MS.gene020029:CDS |
| ACATTTCTGACTTAGAATCG+GGG | 0.708791 | 8.3:+76460763 | MS.gene020029:CDS |
| GACAACCTAATAAAGGCCTG+GGG | 0.731055 | 8.3:-76459072 | None:intergenic |
| GCGACACGTGACGTGCGTGG+AGG | 0.761972 | 8.3:+76461283 | MS.gene020029:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAACTGATTTTTCTTTT+AGG | - | chr8.3:76460528-76460547 | None:intergenic | 15.0% |
| !!! | AAAAACTGATTTTTCTTTTA+GGG | - | chr8.3:76460527-76460546 | None:intergenic | 15.0% |
| !!! | AAACTGATTAATTTTATAGT+AGG | - | chr8.3:76459930-76459949 | None:intergenic | 15.0% |
| !!! | AACTGATTAATTTTATAGTA+GGG | - | chr8.3:76459929-76459948 | None:intergenic | 15.0% |
| !!! | TAAAAGTACAAACTTTATTT+TGG | + | chr8.3:76460382-76460401 | MS.gene020029:intron | 15.0% |
| !! | AATACACGATAAAGTTAATT+TGG | + | chr8.3:76460178-76460197 | MS.gene020029:intron | 20.0% |
| !!! | CATGCATTTTATTAACATTT+TGG | - | chr8.3:76460644-76460663 | None:intergenic | 20.0% |
| !!! | TTGATAGTTATTAAATGACA+GGG | + | chr8.3:76460695-76460714 | MS.gene020029:intron | 20.0% |
| !!! | TTTAACTTTCAAATGCAATT+CGG | - | chr8.3:76459572-76459591 | None:intergenic | 20.0% |
| !!! | TTTGATAGTTATTAAATGAC+AGG | + | chr8.3:76460694-76460713 | MS.gene020029:intron | 20.0% |
| ! | AAAAAATAACTATCTCCGAA+TGG | + | chr8.3:76460036-76460055 | MS.gene020029:intron | 25.0% |
| ! | AATTCATATAAATGCCGAAA+AGG | + | chr8.3:76461076-76461095 | MS.gene020029:CDS | 25.0% |
| ! | ATTCATATAAATGCCGAAAA+GGG | + | chr8.3:76461077-76461096 | MS.gene020029:CDS | 25.0% |
| ! | TCACTTTGCATTTATGATAA+TGG | + | chr8.3:76460153-76460172 | MS.gene020029:intron | 25.0% |
| !! | AAACCTGTGATTCTTTTTAA+CGG | + | chr8.3:76459499-76459518 | MS.gene020029:CDS | 25.0% |
| !! | TTTTAAATCAGATTCTTCGA+GGG | - | chr8.3:76459326-76459345 | None:intergenic | 25.0% |
| AAAACTTCTGCTCTATATGA+AGG | - | chr8.3:76460553-76460572 | None:intergenic | 30.0% | |
| AACAAATGGAGTTGTTATGA+AGG | - | chr8.3:76460853-76460872 | None:intergenic | 30.0% | |
| AATTGAAATTGACAGCCATT+CGG | - | chr8.3:76460054-76460073 | None:intergenic | 30.0% | |
| ATTCAGTTGCAAGTTTAGTA+AGG | + | chr8.3:76459687-76459706 | MS.gene020029:CDS | 30.0% | |
| CTAAACTTGCAACTGAATAT+TGG | - | chr8.3:76459685-76459704 | None:intergenic | 30.0% | |
| TCAAACCGAAAAACATATGT+AGG | - | chr8.3:76459607-76459626 | None:intergenic | 30.0% | |
| TGAAGAAAGTCTTTGAATTC+CGG | - | chr8.3:76459151-76459170 | None:intergenic | 30.0% | |
| TGACATTTCTGACTTAGAAT+CGG | + | chr8.3:76460761-76460780 | MS.gene020029:CDS | 30.0% | |
| TGCACATAGTATTAGTTAGA+TGG | - | chr8.3:76460112-76460131 | None:intergenic | 30.0% | |
| ! | ATTTTATAGTAGGGATGACA+AGG | - | chr8.3:76459920-76459939 | None:intergenic | 30.0% |
| ! | CTGATCCTACATATGTTTTT+CGG | + | chr8.3:76459599-76459618 | MS.gene020029:CDS | 30.0% |
| ! | CTTTTAAATCAGATTCTTCG+AGG | - | chr8.3:76459327-76459346 | None:intergenic | 30.0% |
| ! | TGGTTATTTCACACAAACTA+AGG | - | chr8.3:76460241-76460260 | None:intergenic | 30.0% |
| ! | TTTTTGTTGCAAAACCTAGA+GGG | - | chr8.3:76459968-76459987 | None:intergenic | 30.0% |
| !!! | AATCGGCATTTTTAAAATGC+AGG | + | chr8.3:76459453-76459472 | MS.gene020029:CDS | 30.0% |
| !!! | TTTTTTGTTGCAAAACCTAG+AGG | - | chr8.3:76459969-76459988 | None:intergenic | 30.0% |
| AAATTCTAACAAGTGCCCTT+AGG | + | chr8.3:76460343-76460362 | MS.gene020029:intron | 35.0% | |
| AATTAGAGATTACTCCCTCT+AGG | + | chr8.3:76459951-76459970 | MS.gene020029:intron | 35.0% | |
| AATTCTAACAAGTGCCCTTA+GGG | + | chr8.3:76460344-76460363 | MS.gene020029:intron | 35.0% | |
| ACATTTCTGACTTAGAATCG+GGG | + | chr8.3:76460763-76460782 | MS.gene020029:CDS | 35.0% | |
| CATCCGTTAAAAAGAATCAC+AGG | - | chr8.3:76459505-76459524 | None:intergenic | 35.0% | |
| CGAAAAACATATGTAGGATC+AGG | - | chr8.3:76459601-76459620 | None:intergenic | 35.0% | |
| CTATAATCCTCATGCATGTT+TGG | + | chr8.3:76459369-76459388 | MS.gene020029:CDS | 35.0% | |
| CTGTGTATCACGTATAACTT+CGG | - | chr8.3:76459244-76459263 | None:intergenic | 35.0% | |
| GACATTTCTGACTTAGAATC+GGG | + | chr8.3:76460762-76460781 | MS.gene020029:CDS | 35.0% | |
| GATTCTAAGTCAGAAATGTC+AGG | - | chr8.3:76460762-76460781 | None:intergenic | 35.0% | |
| TATGCTAACAAATGCCCTTA+GGG | - | chr8.3:76460503-76460522 | None:intergenic | 35.0% | |
| TGAGGATTATAGAAACAACC+AGG | - | chr8.3:76459361-76459380 | None:intergenic | 35.0% | |
| TTATGCTAACAAATGCCCTT+AGG | - | chr8.3:76460504-76460523 | None:intergenic | 35.0% | |
| TTGCAAATGTGACACTCAAT+GGG | - | chr8.3:76460018-76460037 | None:intergenic | 35.0% | |
| TTTCTTAACTAGTGCCCTAA+GGG | - | chr8.3:76460361-76460380 | None:intergenic | 35.0% | |
| TTTGCAAATGTGACACTCAA+TGG | - | chr8.3:76460019-76460038 | None:intergenic | 35.0% | |
| ! | CACGTTTCTCATGTGTTTTT+CGG | - | chr8.3:76461123-76461142 | None:intergenic | 35.0% |
| ! | CTGTGATTCTTTTTAACGGA+TGG | + | chr8.3:76459503-76459522 | MS.gene020029:CDS | 35.0% |
| ! | TTTCTTTGCAATCTGAAGCA+TGG | + | chr8.3:76460600-76460619 | MS.gene020029:intron | 35.0% |
| !! | ATTCTTTTTAACGGATGGAC+AGG | + | chr8.3:76459508-76459527 | MS.gene020029:CDS | 35.0% |
| !! | ATTGTGGAGTTGGTGTTAAA+AGG | + | chr8.3:76459425-76459444 | MS.gene020029:CDS | 35.0% |
| !! | CTAAACTTGCTGCATGATAT+AGG | + | chr8.3:76459885-76459904 | MS.gene020029:intron | 35.0% |
| !!! | GGCATTTTTAAAATGCAGGT+TGG | + | chr8.3:76459457-76459476 | MS.gene020029:CDS | 35.0% |
| ACTCCATTTGTTCCATCTTC+AGG | + | chr8.3:76460861-76460880 | MS.gene020029:CDS | 40.0% | |
| ACTGGAATTGAACTGAACAC+TGG | + | chr8.3:76459120-76459139 | MS.gene020029:CDS | 40.0% | |
| ATACCTAGTCCTCAAAGTAG+TGG | + | chr8.3:76461161-76461180 | MS.gene020029:CDS | 40.0% | |
| ATGACAAAACCTCCAACAAC+CGG | - | chr8.3:76461206-76461225 | None:intergenic | 40.0% | |
| ATGCTAACAAATGCCCTTAG+GGG | - | chr8.3:76460502-76460521 | None:intergenic | 40.0% | |
| CAACCTGAAGATGGAACAAA+TGG | - | chr8.3:76460867-76460886 | None:intergenic | 40.0% | |
| CATATAAATGCCGAAAAGGG+TGG | + | chr8.3:76461080-76461099 | MS.gene020029:CDS | 40.0% | |
| CGAAAAACACATGAGAAACG+TGG | + | chr8.3:76461121-76461140 | MS.gene020029:CDS | 40.0% | |
| GAACTGAACACTGGAAAATC+CGG | + | chr8.3:76459129-76459148 | MS.gene020029:CDS | 40.0% | |
| GCCTATCGACAACCTAATAA+AGG | - | chr8.3:76459082-76459101 | None:intergenic | 40.0% | |
| GCGAAGATACATGATCTATC+TGG | + | chr8.3:76460810-76460829 | MS.gene020029:CDS | 40.0% | |
| GGTGTTAAAAGGCAGCAAAT+CGG | + | chr8.3:76459436-76459455 | MS.gene020029:CDS | 40.0% | |
| GTTGCAAGTTTAGTAAGGAC+AGG | + | chr8.3:76459692-76459711 | MS.gene020029:CDS | 40.0% | |
| GTTTCTTAACTAGTGCCCTA+AGG | - | chr8.3:76460362-76460381 | None:intergenic | 40.0% | |
| TACCTAGTCCTCAAAGTAGT+GGG | + | chr8.3:76461162-76461181 | MS.gene020029:CDS | 40.0% | |
| TCCCTTCTTCCCTGAAAATA+CGG | - | chr8.3:76459401-76459420 | None:intergenic | 40.0% | |
| TGTACCTCAAGCAGCATATT+TGG | - | chr8.3:76459854-76459873 | None:intergenic | 40.0% | |
| ! | CTACTTTGAGGACTAGGTAT+TGG | - | chr8.3:76461161-76461180 | None:intergenic | 40.0% |
| ! | GCCTTTATTAGGTTGTCGAT+AGG | + | chr8.3:76459078-76459097 | MS.gene020029:CDS | 40.0% |
| ! | TGGAGATTGCCGTATTTTCA+GGG | + | chr8.3:76459389-76459408 | MS.gene020029:CDS | 40.0% |
| ! | TTGGAGATTGCCGTATTTTC+AGG | + | chr8.3:76459388-76459407 | MS.gene020029:CDS | 40.0% |
| ! | TTTAACGGATGGACAGGTAT+TGG | + | chr8.3:76459514-76459533 | MS.gene020029:CDS | 40.0% |
| !! | AGGTATTGGCAAGAACAAAC+AGG | + | chr8.3:76459528-76459547 | MS.gene020029:CDS | 40.0% |
| !! | TCCATCTTCAGGTTGTGATT+GGG | + | chr8.3:76460872-76460891 | MS.gene020029:CDS | 40.0% |
| !! | TTCCATCTTCAGGTTGTGAT+TGG | + | chr8.3:76460871-76460890 | MS.gene020029:CDS | 40.0% |
| AAACAGGAGAACGGAAAACC+AGG | + | chr8.3:76459544-76459563 | MS.gene020029:CDS | 45.0% | |
| AACTTCGGCAGAGGTTATCA+AGG | - | chr8.3:76459229-76459248 | None:intergenic | 45.0% | |
| AAGGGATCTCATTGTGGAGT+TGG | + | chr8.3:76459415-76459434 | MS.gene020029:CDS | 45.0% | |
| ACCAGATGTGACACTCACAA+TGG | + | chr8.3:76460257-76460276 | MS.gene020029:intron | 45.0% | |
| ACCATAACACTCCATGTCCT+TGG | + | chr8.3:76459827-76459846 | MS.gene020029:intron | 45.0% | |
| ACCCAATCACAACCTGAAGA+TGG | - | chr8.3:76460876-76460895 | None:intergenic | 45.0% | |
| ACCCTCTTCTGATCTTCCTT+CGG | - | chr8.3:76461373-76461392 | None:intergenic | 45.0% | |
| ACCTAGTCCTCAAAGTAGTG+GGG | + | chr8.3:76461163-76461182 | MS.gene020029:CDS | 45.0% | |
| ACTTCGGCAGAGGTTATCAA+GGG | - | chr8.3:76459228-76459247 | None:intergenic | 45.0% | |
| AGAAGATTGCCTCCATCTTG+AGG | - | chr8.3:76461047-76461066 | None:intergenic | 45.0% | |
| AGCTGTAGAGTTCAAGGTGA+AGG | + | chr8.3:76461227-76461246 | MS.gene020029:CDS | 45.0% | |
| ATCACGTATAACTTCGGCAG+AGG | - | chr8.3:76459238-76459257 | None:intergenic | 45.0% | |
| ATGTGACACTCACAATGGGA+CGG | + | chr8.3:76460262-76460281 | MS.gene020029:intron | 45.0% | |
| ATTGCCTCCATCTTGAGGTT+CGG | - | chr8.3:76461042-76461061 | None:intergenic | 45.0% | |
| CAAGCAGCATATTTGGACCA+AGG | - | chr8.3:76459847-76459866 | None:intergenic | 45.0% | |
| CCAGATGTGACACTCACAAT+GGG | + | chr8.3:76460258-76460277 | MS.gene020029:intron | 45.0% | |
| CGACAACCTAATAAAGGCCT+GGG | - | chr8.3:76459076-76459095 | None:intergenic | 45.0% | |
| CTTCTATCCGAACCTCAAGA+TGG | + | chr8.3:76461032-76461051 | MS.gene020029:CDS | 45.0% | |
| CTTCTGATCTTCCTTCGGAA+AGG | - | chr8.3:76461368-76461387 | None:intergenic | 45.0% | |
| CTTGAGGTTCGGATAGAAGA+TGG | - | chr8.3:76461031-76461050 | None:intergenic | 45.0% | |
| GAACAATCAACCAAGCTCCT+GGG | - | chr8.3:76460911-76460930 | None:intergenic | 45.0% | |
| GACAACCTAATAAAGGCCTG+GGG | - | chr8.3:76459075-76459094 | None:intergenic | 45.0% | |
| GCAATCTCCAAACATGCATG+AGG | - | chr8.3:76459379-76459398 | None:intergenic | 45.0% | |
| GCATATTTGGACCAAGGACA+TGG | - | chr8.3:76459841-76459860 | None:intergenic | 45.0% | |
| GGAAGATCAGAAGAGGGTTT+CGG | + | chr8.3:76461375-76461394 | MS.gene020029:CDS | 45.0% | |
| GGCAAGAACAAACAGGAGAA+CGG | + | chr8.3:76459535-76459554 | MS.gene020029:CDS | 45.0% | |
| GTCATGAGCTGTAGAGTTCA+AGG | + | chr8.3:76461221-76461240 | MS.gene020029:CDS | 45.0% | |
| GTTTGTGAGATACGACTTCG+AGG | + | chr8.3:76459177-76459196 | MS.gene020029:CDS | 45.0% | |
| TCCGAAGGAAGATCAGAAGA+GGG | + | chr8.3:76461369-76461388 | MS.gene020029:CDS | 45.0% | |
| TCGACAACCTAATAAAGGCC+TGG | - | chr8.3:76459077-76459096 | None:intergenic | 45.0% | |
| TGCTAACAAATGCCCTTAGG+GGG | - | chr8.3:76460501-76460520 | None:intergenic | 45.0% | |
| TGGCAAACCATTAGTACAGC+TGG | + | chr8.3:76461256-76461275 | MS.gene020029:CDS | 45.0% | |
| TTCAAATGCAATTCGGCACC+TGG | - | chr8.3:76459565-76459584 | None:intergenic | 45.0% | |
| TTCCGAAGGAAGATCAGAAG+AGG | + | chr8.3:76461368-76461387 | MS.gene020029:CDS | 45.0% | |
| TTTCTGACTTAGAATCGGGG+AGG | + | chr8.3:76460766-76460785 | MS.gene020029:CDS | 45.0% | |
| ! | ACCAAGGACATGGAGTGTTA+TGG | - | chr8.3:76459831-76459850 | None:intergenic | 45.0% |
| ! | GAAAAACTCGCCACCCTTTT+CGG | - | chr8.3:76461093-76461112 | None:intergenic | 45.0% |
| ! | GGGACTGATGATGTTTGAAC+AGG | - | chr8.3:76459207-76459226 | None:intergenic | 45.0% |
| ! | TCTCTGGGTTTGAGAAGTAC+TGG | + | chr8.3:76459102-76459121 | MS.gene020029:CDS | 45.0% |
| ! | TGGTCCAAATATGCTGCTTG+AGG | + | chr8.3:76459847-76459866 | MS.gene020029:intron | 45.0% |
| ! | TTGACTCGTTGAGCACATAC+TGG | + | chr8.3:76460727-76460746 | MS.gene020029:CDS | 45.0% |
| !! | GCCGTATTTTCAGGGAAGAA+GGG | + | chr8.3:76459397-76459416 | MS.gene020029:CDS | 45.0% |
| !! | TGCCGTATTTTCAGGGAAGA+AGG | + | chr8.3:76459396-76459415 | MS.gene020029:CDS | 45.0% |
| !! | TTAAAAGCGTCGTTAGCTCC+TGG | + | chr8.3:76459340-76459359 | MS.gene020029:CDS | 45.0% |
| !! | AACAAAAAAAAAAAAAAAAA+TGG | + | chr8.3:76459980-76459999 | MS.gene020029:intron | 5.0% |
| AATCAACCAAGCTCCTGGGT+TGG | - | chr8.3:76460907-76460926 | None:intergenic | 50.0% | |
| AGCTGTTGACCTCAGCATTG+AGG | + | chr8.3:76461334-76461353 | MS.gene020029:CDS | 50.0% | |
| AGGTTGTCGATAGGCTCTCT+GGG | + | chr8.3:76459087-76459106 | MS.gene020029:CDS | 50.0% | |
| ATTGTTCGTCCCGATGTGGT+TGG | + | chr8.3:76460924-76460943 | MS.gene020029:CDS | 50.0% | |
| CATGCTTCAAGCTTTCCCCA+CGG | - | chr8.3:76460969-76460988 | None:intergenic | 50.0% | |
| CCAAAGTCCCCACTACTTTG+AGG | - | chr8.3:76461173-76461192 | None:intergenic | 50.0% | |
| CCCATTGTGAGTGTCACATC+TGG | - | chr8.3:76460261-76460280 | None:intergenic | 50.0% | |
| CCTTGCAGCAGAACTATCTG+AGG | - | chr8.3:76459649-76459668 | None:intergenic | 50.0% | |
| CGAACAATCAACCAAGCTCC+TGG | - | chr8.3:76460912-76460931 | None:intergenic | 50.0% | |
| CGCAATGCCAGCTGTACTAA+TGG | - | chr8.3:76461266-76461285 | None:intergenic | 50.0% | |
| CTATCCGAACCTCAAGATGG+AGG | + | chr8.3:76461035-76461054 | MS.gene020029:CDS | 50.0% | |
| CTCGTTGAGCACATACTGGT+CGG | + | chr8.3:76460731-76460750 | MS.gene020029:CDS | 50.0% | |
| CTTAACTAGTGCCCCCCTAA+GGG | + | chr8.3:76460486-76460505 | MS.gene020029:intron | 50.0% | |
| CTTCGGCAGAGGTTATCAAG+GGG | - | chr8.3:76459227-76459246 | None:intergenic | 50.0% | |
| GAGAGAGAGAAAAGGGTGGA+AGG | + | chr8.3:76460788-76460807 | MS.gene020029:CDS | 50.0% | |
| GCTAACAAATGCCCTTAGGG+GGG | - | chr8.3:76460500-76460519 | None:intergenic | 50.0% | |
| GGGAAGAAGGGATCTCATTG+TGG | + | chr8.3:76459409-76459428 | MS.gene020029:CDS | 50.0% | |
| GTTCAAGGTGAAGGAAAGCG+TGG | + | chr8.3:76461236-76461255 | MS.gene020029:CDS | 50.0% | |
| GTTGATTGTTCGTCCCGATG+TGG | + | chr8.3:76460920-76460939 | MS.gene020029:CDS | 50.0% | |
| GTTTCCCTTCACCCCATTCA+GGG | - | chr8.3:76459483-76459502 | None:intergenic | 50.0% | |
| TAGGTTGTCGATAGGCTCTC+TGG | + | chr8.3:76459086-76459105 | MS.gene020029:CDS | 50.0% | |
| TCGTTGAGCACATACTGGTC+GGG | + | chr8.3:76460732-76460751 | MS.gene020029:CDS | 50.0% | |
| TGCCATCTTCATGGCACTTG+CGG | + | chr8.3:76461310-76461329 | MS.gene020029:CDS | 50.0% | |
| TGGATCCCCAGGCCTTTATT+AGG | + | chr8.3:76459067-76459086 | MS.gene020029:CDS | 50.0% | |
| ! | AAATGCAGGTTGGCCCTGAA+TGG | + | chr8.3:76459467-76459486 | MS.gene020029:CDS | 50.0% |
| ! | AATGCAGGTTGGCCCTGAAT+GGG | + | chr8.3:76459468-76459487 | MS.gene020029:CDS | 50.0% |
| ! | CCTCAAAGTAGTGGGGACTT+TGG | + | chr8.3:76461170-76461189 | MS.gene020029:CDS | 50.0% |
| ! | CCTCAGATAGTTCTGCTGCA+AGG | + | chr8.3:76459646-76459665 | MS.gene020029:CDS | 50.0% |
| ! | TCCCCACTACTTTGAGGACT+AGG | - | chr8.3:76461167-76461186 | None:intergenic | 50.0% |
| AGGCATGCAAGCCTTTCCGA+AGG | + | chr8.3:76461354-76461373 | MS.gene020029:CDS | 55.0% | |
| CAAGATCCAACCCAGGAGCT+TGG | + | chr8.3:76460898-76460917 | MS.gene020029:CDS | 55.0% | |
| CCTTAACTAGTGCCCCCCTA+AGG | + | chr8.3:76460485-76460504 | MS.gene020029:intron | 55.0% | |
| CGGGGAGGAGAGAGAGAAAA+GGG | + | chr8.3:76460781-76460800 | MS.gene020029:CDS | 55.0% | |
| CGTGGGGAAAGCTTGAAGCA+TGG | + | chr8.3:76460967-76460986 | MS.gene020029:CDS | 55.0% | |
| CTCGGAGCTACCAACCACAT+CGG | - | chr8.3:76460937-76460956 | None:intergenic | 55.0% | |
| GACACTCACAATGGGACGGA+GGG | + | chr8.3:76460266-76460285 | MS.gene020029:intron | 55.0% | |
| GCTTGCATGCCTCAATGCTG+AGG | - | chr8.3:76461346-76461365 | None:intergenic | 55.0% | |
| GGAGGAGAGAGAGAAAAGGG+TGG | + | chr8.3:76460784-76460803 | MS.gene020029:CDS | 55.0% | |
| GGAGGATGCTGCCATCTTCA+TGG | + | chr8.3:76461301-76461320 | MS.gene020029:CDS | 55.0% | |
| GGTTTCCCTTCACCCCATTC+AGG | - | chr8.3:76459484-76459503 | None:intergenic | 55.0% | |
| TCGGAGCTACCAACCACATC+GGG | - | chr8.3:76460936-76460955 | None:intergenic | 55.0% | |
| TCGGGGAGGAGAGAGAGAAA+AGG | + | chr8.3:76460780-76460799 | MS.gene020029:CDS | 55.0% | |
| TGACACTCACAATGGGACGG+AGG | + | chr8.3:76460265-76460284 | MS.gene020029:intron | 55.0% | |
| TGCCGCAAGTGCCATGAAGA+TGG | - | chr8.3:76461315-76461334 | None:intergenic | 55.0% | |
| TGGGTTGCAAGATCCAACCC+AGG | + | chr8.3:76460891-76460910 | MS.gene020029:CDS | 55.0% | |
| TTGGCCCTGAATGGGGTGAA+GGG | + | chr8.3:76459476-76459495 | MS.gene020029:CDS | 55.0% | |
| ! | ATGCAGGTTGGCCCTGAATG+GGG | + | chr8.3:76459469-76459488 | MS.gene020029:CDS | 55.0% |
| ! | GGACTTTGGTGCACTGAGTC+CGG | + | chr8.3:76461184-76461203 | MS.gene020029:CDS | 55.0% |
| !! | CCTTAGGGGGGCACTAGTTA+AGG | - | chr8.3:76460488-76460507 | None:intergenic | 55.0% |
| ATTGCGACACGTGACGTGCG+TGG | + | chr8.3:76461280-76461299 | MS.gene020029:CDS | 60.0% | |
| GCACTGAGTCCGGTTGTTGG+AGG | + | chr8.3:76461194-76461213 | MS.gene020029:CDS | 60.0% | |
| GGTGCACTGAGTCCGGTTGT+TGG | + | chr8.3:76461191-76461210 | MS.gene020029:CDS | 60.0% | |
| GTTGGCCCTGAATGGGGTGA+AGG | + | chr8.3:76459475-76459494 | MS.gene020029:CDS | 60.0% | |
| !! | TGGTTGGTAGCTCCGAGAGC+TGG | + | chr8.3:76460940-76460959 | MS.gene020029:CDS | 60.0% |
| CTTGAAGCATGGCGCGAGCG+CGG | + | chr8.3:76460978-76460997 | MS.gene020029:CDS | 65.0% | |
| CTCCGAGAGCTGGCAGCCGT+GGG | + | chr8.3:76460950-76460969 | MS.gene020029:CDS | 70.0% | |
| GCGACACGTGACGTGCGTGG+AGG | + | chr8.3:76461283-76461302 | MS.gene020029:CDS | 70.0% | |
| TCCCCACGGCTGCCAGCTCT+CGG | - | chr8.3:76460955-76460974 | None:intergenic | 70.0% | |
| TCCGAGAGCTGGCAGCCGTG+GGG | + | chr8.3:76460951-76460970 | MS.gene020029:CDS | 70.0% | |
| GCTCCGAGAGCTGGCAGCCG+TGG | + | chr8.3:76460949-76460968 | MS.gene020029:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 76459066 | 76461409 | 76459066 | ID=MS.gene020029 |
| chr8.3 | mRNA | 76459066 | 76461409 | 76459066 | ID=MS.gene020029.t1;Parent=MS.gene020029 |
| chr8.3 | exon | 76459066 | 76459198 | 76459066 | ID=MS.gene020029.t1.exon1;Parent=MS.gene020029.t1 |
| chr8.3 | CDS | 76459066 | 76459198 | 76459066 | ID=cds.MS.gene020029.t1;Parent=MS.gene020029.t1 |
| chr8.3 | exon | 76459287 | 76459713 | 76459287 | ID=MS.gene020029.t1.exon2;Parent=MS.gene020029.t1 |
| chr8.3 | CDS | 76459287 | 76459713 | 76459287 | ID=cds.MS.gene020029.t1;Parent=MS.gene020029.t1 |
| chr8.3 | exon | 76460716 | 76461409 | 76460716 | ID=MS.gene020029.t1.exon3;Parent=MS.gene020029.t1 |
| chr8.3 | CDS | 76460716 | 76461409 | 76460716 | ID=cds.MS.gene020029.t1;Parent=MS.gene020029.t1 |
| Gene Sequence |
| Protein sequence |
